HHsearch alignment for GI: 254780450 and conserved domain: TIGR02956

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00  E-value=0  Score=640.09  Aligned_cols=365  Identities=25%  Similarity=0.383  Sum_probs=310.8

Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C----EEE
Q ss_conf             4444687630342566415899999999998507998478888999999988887643004542120058--4----358
Q gi|254780450|r  416 KLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM--R----LTV  489 (803)
Q Consensus       416 ~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~--~----~~~  489 (803)
T Consensus       501 AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL-~d~~L~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEaGGthl~i~~~~  579 (1052)
T TIGR02956       501 ANRAKSAFLATMSHEIRTPLNGILGTLELL-GDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGGTHLSISPRP  579 (1052)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             748876887413511320113689999750-5899888899999999862278999984675467761087465345567


Q ss_pred             EEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE-EEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf             53467899999999875035681699981489722-69987169999999987422765206788579999985042101
Q gi|254780450|r  490 LNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLW-GVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEI  568 (803)
Q Consensus       490 ~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~  568 (803)
T Consensus       580 fd~~~L~~dv~~Lm~sR-A~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgN---aIKFT~~Gsv~l~~~l~~~~~~  655 (1052)
T TIGR02956       580 FDLNKLLEDVHHLMESR-AQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGN---AIKFTDRGSVVLRVSLNDDSSS  655 (1052)
T ss_pred             CCHHHHHHHHHHHHHHH-HHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHC---CCEECCCCEEEEEEEECCCCCC
T ss_conf             78888999999999987-7403725674276542788753661344767654413---2004345269999885588898


Q ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC---CCCCCCCCHHHHHHHHHHCCCCE---EEEEECCCCC
Q ss_conf             22455667889789999997886688445420232222101---35776530388999998516754---9999618894
Q gi|254780450|r  569 HTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK---KVGEGTGLGLSVVYGIIRQSGGY---ILPESEVGKG  642 (803)
Q Consensus       569 ~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk---~~g~GtGLGL~i~~~iv~~~gG~---i~v~S~~g~G  642 (803)
T Consensus       656 ---------gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~G  726 (1052)
T TIGR02956       656 ---------GDSELLFEVEDTGVGIAEEEQATLFDAFTQADEGRRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQG  726 (1052)
T ss_pred             ---------CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             ---------66347888862477998799985433101210137313776506899999999708887650166645875


Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf             29999943757664433333322223544445333478756999769889999999999988989999899899989998
Q gi|254780450|r  643 TIFRIFLPRYVQEHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVME  722 (803)
Q Consensus       643 t~F~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~  722 (803)
T Consensus       727 ScF~F~lpl~~~~~~~~~~~d~~~~~~~~~a---l-sqyy~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~  802 (1052)
T TIGR02956       727 SCFWFTLPLARGKPAEKSATDRTVIDVPPQA---L-SQYYRVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFH  802 (1052)
T ss_pred             CEEEEECCCCCCCHHCCHHHCCCHHHCCCHH---H-HHHCEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
T ss_conf             0221242313375000303335012146234---5-30001324644747799999998427944720854999999985


Q ss_pred             HCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC--------CCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             65999548998587889888999999998689--------9829999067858998767605798075079799999999
Q gi|254780450|r  723 KLQGRVDIVISDVVMPEMDGPTLLRELRKTYP--------SLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATS  794 (803)
Q Consensus       723 ~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~--------~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~  794 (803)
T Consensus       803 ~-~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~p~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~  881 (1052)
T TIGR02956       803 Q-DHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDEPVKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAM  881 (1052)
T ss_pred             C-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             4-887675455157889865678999999997320444567772221133447769999753026634799877889999


Q ss_pred             HHHHH
Q ss_conf             99985
Q gi|254780450|r  795 VHELL  799 (803)
Q Consensus       795 i~~~L  799 (803)
T Consensus       882 l~~~l  886 (1052)
T TIGR02956       882 LAKIL  886 (1052)
T ss_pred             HHHHH
T ss_conf             99987