HHsearch alignment for GI: 254780450 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00 E-value=0 Score=640.09 Aligned_cols=365 Identities=25% Similarity=0.383 Sum_probs=310.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C----EEE
Q ss_conf 4444687630342566415899999999998507998478888999999988887643004542120058--4----358
Q gi|254780450|r 416 KLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM--R----LTV 489 (803)
Q Consensus 416 ~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~--~----~~~ 489 (803)
T Consensus 501 AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL-~d~~L~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEaGGthl~i~~~~ 579 (1052)
T TIGR02956 501 ANRAKSAFLATMSHEIRTPLNGILGTLELL-GDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGGTHLSISPRP 579 (1052)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 748876887413511320113689999750-5899888899999999862278999984675467761087465345567
Q ss_pred EEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE-EEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 53467899999999875035681699981489722-69987169999999987422765206788579999985042101
Q gi|254780450|r 490 LNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLW-GVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEI 568 (803)
Q Consensus 490 ~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~ 568 (803)
T Consensus 580 fd~~~L~~dv~~Lm~sR-A~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgN---aIKFT~~Gsv~l~~~l~~~~~~ 655 (1052)
T TIGR02956 580 FDLNKLLEDVHHLMESR-AQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGN---AIKFTDRGSVVLRVSLNDDSSS 655 (1052)
T ss_pred CCHHHHHHHHHHHHHHH-HHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHC---CCEECCCCEEEEEEEECCCCCC
T ss_conf 78888999999999987-7403725674276542788753661344767654413---2004345269999885588898
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC---CCCCCCCCHHHHHHHHHHCCCCE---EEEEECCCCC
Q ss_conf 22455667889789999997886688445420232222101---35776530388999998516754---9999618894
Q gi|254780450|r 569 HTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK---KVGEGTGLGLSVVYGIIRQSGGY---ILPESEVGKG 642 (803)
Q Consensus 569 ~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk---~~g~GtGLGL~i~~~iv~~~gG~---i~v~S~~g~G 642 (803)
T Consensus 656 ---------gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~G 726 (1052)
T TIGR02956 656 ---------GDSELLFEVEDTGVGIAEEEQATLFDAFTQADEGRRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQG 726 (1052)
T ss_pred ---------CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf ---------66347888862477998799985433101210137313776506899999999708887650166645875
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 29999943757664433333322223544445333478756999769889999999999988989999899899989998
Q gi|254780450|r 643 TIFRIFLPRYVQEHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVME 722 (803)
Q Consensus 643 t~F~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~ 722 (803)
T Consensus 727 ScF~F~lpl~~~~~~~~~~~d~~~~~~~~~a---l-sqyy~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~ 802 (1052)
T TIGR02956 727 SCFWFTLPLARGKPAEKSATDRTVIDVPPQA---L-SQYYRVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFH 802 (1052)
T ss_pred CEEEEECCCCCCCHHCCHHHCCCHHHCCCHH---H-HHHCEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
T ss_conf 0221242313375000303335012146234---5-30001324644747799999998427944720854999999985
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC--------CCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf 65999548998587889888999999998689--------9829999067858998767605798075079799999999
Q gi|254780450|r 723 KLQGRVDIVISDVVMPEMDGPTLLRELRKTYP--------SLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATS 794 (803)
Q Consensus 723 ~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~--------~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~ 794 (803)
T Consensus 803 ~-~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~p~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~ 881 (1052)
T TIGR02956 803 Q-DHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDEPVKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAM 881 (1052)
T ss_pred C-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 4-887675455157889865678999999997320444567772221133447769999753026634799877889999
Q ss_pred HHHHH
Q ss_conf 99985
Q gi|254780450|r 795 VHELL 799 (803)
Q Consensus 795 i~~~L 799 (803)
T Consensus 882 l~~~l 886 (1052)
T TIGR02956 882 LAKIL 886 (1052)
T ss_pred HHHHH
T ss_conf 99987