HHsearch alignment for GI: 254780450 and conserved domain: cd00130
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=98.40 E-value=2.2e-06 Score=62.91 Aligned_cols=103 Identities=21% Similarity=0.175 Sum_probs=57.9
Q ss_pred CCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCEEECCCC
Q ss_conf 49809999599938981066886709995673156110002787616789999999832432320389860100004898
Q gi|254780450|r 36 EPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNS 115 (803)
Q Consensus 36 ~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~g 115 (803)
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g 74 (103)
T cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTLEVRL------RRKDG 74 (103)
T ss_pred CCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHEECCHHHHHHHHHHHHHHHCCCCCEEEEEE------ECCCC
T ss_conf 962899997989899998899998798878916996542455211699999999999749985248999------99999
Q ss_pred CEEEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 679999999999823788069999999783
Q gi|254780450|r 116 EPHWYRLKARVLPISLHKEKLLYAWRITDI 145 (803)
Q Consensus 116 ~~~w~~i~~~~~~~~~~~~~~~~~~~i~DI 145 (803)
T Consensus 75 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~di 103 (103)
T cd00130 75 SVIWVLVSLTPIRDEG-GEVIGLLGVVRDI 103 (103)
T ss_pred CEEEEEEEEEEEECCC-CCEEEEEEEEECC
T ss_conf 9999999999999999-8999999999829