Query gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 803
No_of_seqs 285 out of 14557
Neff 10.0
Searched_HMMs 39220
Date Sun May 29 18:17:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780450.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13557 histidine kinase; Pro 100.0 0 0 803.9 54.4 500 287-802 27-534 (538)
2 PRK11091 aerobic respiration c 100.0 0 0 796.1 50.7 494 272-801 139-645 (779)
3 PRK10841 hybrid sensory kinase 100.0 0 0 735.4 49.7 475 278-800 347-941 (947)
4 PRK09959 hybrid sensory histid 100.0 0 0 736.5 48.7 501 271-800 559-1075(1197)
5 PRK13837 two-component VirA-li 100.0 0 0 685.6 42.5 387 399-802 432-818 (831)
6 PRK11466 hybrid sensory histid 100.0 0 0 660.2 42.0 355 416-802 440-801 (912)
7 PRK11107 hybrid sensory histid 100.0 0 0 654.3 41.1 369 415-801 288-788 (920)
8 TIGR02956 TMAO_torS TMAO reduc 100.0 0 0 640.1 29.7 365 416-799 501-886 (1052)
9 PRK13560 hypothetical protein; 100.0 0 0 492.6 59.2 586 15-654 192-806 (807)
10 PRK11360 sensory histidine kin 100.0 0 0 504.2 36.8 354 277-655 250-603 (607)
11 TIGR02966 phoR_proteo phosphat 100.0 0 0 452.6 27.4 322 285-649 3-339 (339)
12 PRK11006 phoR phosphate regulo 100.0 0 0 445.3 31.9 334 274-654 84-426 (431)
13 PRK11073 glnL nitrogen regulat 100.0 0 0 418.4 31.2 339 290-651 9-347 (348)
14 PRK10364 sensor protein ZraS; 100.0 0 0 425.1 24.8 236 399-654 217-452 (455)
15 PRK09303 adaptive-response sen 100.0 0 0 385.7 25.2 221 415-653 144-377 (378)
16 PRK09776 putative sensor prote 100.0 5.5E-44 0 328.0 56.0 386 19-413 296-686 (1116)
17 PRK10490 sensor protein KdpD; 100.0 0 0 366.2 24.0 219 418-656 662-887 (895)
18 TIGR02938 nifL_nitrog nitrogen 100.0 0 0 368.1 21.9 463 160-650 4-495 (496)
19 COG5002 VicK Signal transducti 100.0 0 0 356.3 24.1 345 271-652 93-449 (459)
20 PRK11086 sensory histidine kin 100.0 8.4E-45 0 333.5 35.5 310 290-654 223-537 (541)
21 PRK11100 sensory histidine kin 100.0 1.4E-45 0 341.1 24.5 213 418-652 254-474 (475)
22 COG3852 NtrB Signal transducti 100.0 1.4E-44 0 332.2 27.2 343 291-653 10-356 (363)
23 COG4191 Signal transduction hi 100.0 1.4E-45 0 338.7 21.7 236 400-652 357-602 (603)
24 PRK10549 signal transduction h 100.0 1.7E-44 0 331.6 24.4 215 419-655 240-463 (467)
25 PRK09835 sensor kinase CusS; P 100.0 7.1E-44 0 327.1 24.3 213 418-652 260-481 (482)
26 KOG0519 consensus 100.0 2.8E-45 0 336.5 15.6 373 419-800 218-785 (786)
27 COG2205 KdpD Osmosensitive K+ 100.0 5.6E-43 0 320.8 22.1 217 418-654 658-882 (890)
28 PRK09470 cpxA two-component se 100.0 2.7E-42 0 316.0 23.6 212 419-654 242-460 (461)
29 PRK10604 sensor protein RstB; 100.0 3.8E-42 0 315.0 23.3 209 418-655 210-427 (433)
30 COG5000 NtrY Signal transducti 100.0 2.4E-40 5.6E-45 302.3 30.1 337 278-651 360-708 (712)
31 PRK10337 sensor protein QseC; 100.0 1.5E-41 0 310.8 22.9 210 418-649 232-446 (446)
32 PRK10755 sensor protein BasS/P 100.0 7.4E-41 1.4E-45 305.9 22.9 209 418-651 141-355 (355)
33 PRK09467 envZ osmolarity senso 100.0 5.5E-40 1.4E-44 299.8 23.0 202 420-651 231-435 (437)
34 PRK10815 sensor protein PhoQ; 100.0 1.5E-38 3.8E-43 289.7 23.7 213 418-654 264-480 (484)
35 PRK13560 hypothetical protein; 100.0 1.7E-37 4.2E-42 282.3 28.5 385 19-416 59-477 (807)
36 TIGR01386 cztS_silS_copS heavy 100.0 7.6E-39 1.9E-43 291.7 18.2 212 418-650 259-483 (483)
37 TIGR02916 PEP_his_kin putative 100.0 1E-35 2.7E-40 269.6 20.8 219 407-650 473-696 (696)
38 COG4251 Bacteriophytochrome (l 100.0 1.1E-35 2.8E-40 269.5 18.7 214 420-655 524-745 (750)
39 PRK09776 putative sensor prote 100.0 1.2E-33 3.1E-38 255.0 24.0 266 146-415 290-557 (1116)
40 PRK11359 cAMP phosphodiesteras 100.0 7.4E-29 1.9E-33 221.3 44.8 251 20-282 5-257 (799)
41 COG3290 CitA Signal transducti 100.0 3.4E-30 8.6E-35 230.8 28.8 315 289-655 216-535 (537)
42 COG0642 BaeS Signal transducti 100.0 1.6E-30 4E-35 233.1 23.9 214 419-654 114-332 (336)
43 COG4192 Signal transduction hi 100.0 1.3E-29 3.2E-34 226.7 17.1 231 400-650 424-665 (673)
44 PRK11359 cAMP phosphodiesteras 100.0 1.8E-26 4.5E-31 204.6 24.0 244 155-409 7-256 (799)
45 PRK10618 phosphotransfer inter 99.9 2.7E-22 6.8E-27 175.1 34.4 385 279-735 334-730 (881)
46 TIGR02154 PhoB phosphate regul 99.9 7.7E-26 2E-30 200.1 12.2 118 681-800 2-121 (226)
47 PRK10693 response regulator of 99.9 1.9E-24 4.8E-29 190.2 17.2 118 680-799 6-124 (337)
48 PRK11361 acetoacetate metaboli 99.9 2.8E-24 7E-29 189.1 15.9 117 682-800 5-121 (457)
49 PRK13559 hypothetical protein; 99.9 1.3E-21 3.3E-26 170.3 29.0 312 286-651 43-361 (363)
50 smart00387 HATPase_c Histidine 99.9 1.2E-24 3.1E-29 191.6 13.1 106 528-651 1-110 (111)
51 PRK10923 glnG nitrogen regulat 99.9 3.6E-24 9.2E-29 188.3 15.5 117 682-800 4-120 (469)
52 PRK10610 chemotaxis regulatory 99.9 8.7E-24 2.2E-28 185.6 17.3 120 679-800 3-125 (129)
53 pfam00072 Response_reg Respons 99.9 4E-24 1E-28 188.0 14.6 111 684-796 1-111 (111)
54 PRK09581 pleD response regulat 99.9 9.9E-24 2.5E-28 185.2 16.5 116 682-799 3-120 (457)
55 PRK10365 transcriptional regul 99.9 1.2E-23 3E-28 184.6 16.7 119 680-800 4-122 (441)
56 cd00156 REC Signal receiver do 99.9 1.1E-23 2.8E-28 184.9 15.3 113 685-799 1-113 (113)
57 pfam02518 HATPase_c Histidine 99.9 5.6E-24 1.4E-28 186.9 12.6 106 528-651 1-110 (111)
58 PRK11083 DNA-binding response 99.9 2.3E-22 5.9E-27 175.6 16.7 117 682-800 4-120 (229)
59 PRK09468 ompR osmolarity respo 99.9 2.2E-22 5.7E-27 175.7 15.9 118 681-800 5-122 (239)
60 PRK10336 DNA-binding transcrip 99.9 1.4E-22 3.6E-27 177.1 14.5 116 683-800 2-117 (219)
61 PRK09836 DNA-binding transcrip 99.9 2E-22 5E-27 176.0 15.1 117 683-801 2-118 (226)
62 TIGR01818 ntrC nitrogen regula 99.9 9.1E-23 2.3E-27 178.4 12.7 118 684-802 1-118 (471)
63 PRK10046 dpiA two-component re 99.9 6.8E-22 1.7E-26 172.2 16.3 117 682-800 5-123 (225)
64 COG2204 AtoC Response regulato 99.9 6.8E-22 1.7E-26 172.2 16.2 119 681-801 4-122 (464)
65 PRK10161 transcriptional regul 99.9 5.6E-22 1.4E-26 172.8 15.7 118 681-800 2-121 (229)
66 PRK09390 fixJ response regulat 99.9 4.9E-22 1.3E-26 173.2 14.7 119 681-801 3-121 (202)
67 CHL00148 orf27 Ycf27; Reviewed 99.9 3E-22 7.8E-27 174.7 13.2 118 680-800 5-122 (240)
68 PRK11517 transcriptional regul 99.9 1E-21 2.6E-26 171.1 15.8 116 683-801 2-117 (223)
69 cd00075 HATPase_c Histidine ki 99.9 3.6E-22 9.3E-27 174.1 11.8 99 533-649 1-103 (103)
70 PRK10430 DNA-binding transcrip 99.9 3E-21 7.7E-26 167.7 15.7 118 683-800 3-122 (239)
71 PRK10643 DNA-binding transcrip 99.9 3.4E-21 8.6E-26 167.3 16.0 117 683-801 2-118 (222)
72 PRK13435 response regulator; P 99.9 3.9E-21 1E-25 166.9 15.3 114 682-801 2-117 (141)
73 PRK10816 DNA-binding transcrip 99.9 2.8E-21 7E-26 168.0 14.4 117 683-801 2-118 (223)
74 PRK11173 two-component respons 99.9 5E-21 1.3E-25 166.2 15.6 116 682-800 4-119 (237)
75 COG4753 Response regulator con 99.9 4E-21 1E-25 166.8 14.4 116 683-800 3-121 (475)
76 PRK10529 DNA-binding transcrip 99.9 1.9E-21 4.8E-26 169.1 12.6 116 683-801 3-118 (225)
77 PRK10955 DNA-binding transcrip 99.9 2.1E-21 5.4E-26 168.8 12.7 114 683-800 3-116 (232)
78 PRK10701 DNA-binding transcrip 99.9 1.7E-21 4.4E-26 169.4 12.1 115 683-800 3-117 (240)
79 PRK10766 DNA-binding transcrip 99.9 3.9E-21 9.9E-26 166.9 13.7 116 681-799 2-117 (224)
80 PRK10710 DNA-binding transcrip 99.9 8.6E-21 2.2E-25 164.5 14.5 117 681-800 10-126 (240)
81 COG0745 OmpR Response regulato 99.9 3.3E-20 8.3E-25 160.4 15.2 116 683-801 2-118 (229)
82 PRK13856 two-component respons 99.8 1.5E-19 3.8E-24 155.7 15.2 115 683-800 3-118 (241)
83 TIGR01387 cztR_silR_copR heavy 99.8 2.9E-21 7.4E-26 167.8 6.0 116 684-801 1-116 (219)
84 PRK00742 chemotaxis-specific m 99.8 4.3E-19 1.1E-23 152.5 15.8 103 682-787 3-109 (345)
85 PRK12555 chemotaxis-specific m 99.8 8.2E-19 2.1E-23 150.5 14.2 100 683-786 3-107 (340)
86 PRK09958 DNA-binding transcrip 99.8 1.7E-18 4.3E-23 148.3 15.7 118 683-802 2-120 (204)
87 COG3437 Response regulator con 99.8 5.5E-19 1.4E-23 151.7 12.8 118 680-799 13-133 (360)
88 PRK09191 two-component respons 99.8 1.1E-18 2.8E-23 149.6 13.7 115 682-801 138-254 (261)
89 PRK10547 chemotaxis protein Ch 99.8 1.5E-17 3.9E-22 141.6 18.2 163 466-651 315-515 (662)
90 PRK09483 response regulator; P 99.8 5.5E-18 1.4E-22 144.7 15.8 118 683-802 3-122 (216)
91 PRK10403 transcriptional regul 99.8 4.7E-18 1.2E-22 145.2 14.9 119 682-802 7-127 (215)
92 PRK10651 transcriptional regul 99.8 2.8E-18 7.1E-23 146.8 13.1 119 682-802 7-127 (216)
93 TIGR02938 nifL_nitrog nitrogen 99.8 2.2E-18 5.7E-23 147.4 12.5 266 27-304 4-287 (496)
94 PRK09935 transcriptional regul 99.8 1.7E-17 4.3E-22 141.3 15.8 119 682-802 4-124 (210)
95 TIGR02875 spore_0_A sporulatio 99.8 6.8E-18 1.7E-22 144.0 13.7 118 682-801 3-124 (270)
96 COG0643 CheA Chemotaxis protei 99.8 5.2E-17 1.3E-21 137.8 17.9 167 462-651 366-573 (716)
97 COG2197 CitB Response regulato 99.8 3.9E-17 1E-21 138.7 16.6 118 683-802 2-121 (211)
98 COG4566 TtrR Response regulato 99.8 1.1E-17 2.8E-22 142.6 13.0 119 682-802 5-123 (202)
99 PRK10935 nitrate/nitrite senso 99.8 8.3E-16 2.1E-20 129.4 21.3 188 425-652 366-563 (568)
100 PRK10840 transcriptional regul 99.7 3.1E-16 7.9E-21 132.4 16.3 119 682-802 4-127 (216)
101 COG0784 CheY FOG: CheY-like re 99.7 3.5E-16 9E-21 132.0 16.0 120 681-801 5-126 (130)
102 PRK13557 histidine kinase; Pro 99.7 7.3E-16 1.9E-20 129.7 17.6 134 143-288 20-157 (538)
103 PRK10360 DNA-binding transcrip 99.7 8.6E-16 2.2E-20 129.2 15.2 115 683-802 3-119 (196)
104 COG3706 PleD Response regulato 99.7 7.5E-16 1.9E-20 129.7 14.7 118 682-801 133-252 (435)
105 COG3947 Response regulator con 99.7 4.5E-16 1.1E-20 131.2 11.0 112 683-799 2-114 (361)
106 COG4565 CitB Response regulato 99.7 2.5E-15 6.3E-20 126.0 14.3 115 683-799 2-118 (224)
107 PRK10600 nitrate/nitrite senso 99.7 1.8E-13 4.5E-18 112.9 21.3 191 421-650 363-555 (569)
108 PRK10060 RNase II stability mo 99.6 8E-12 2E-16 101.3 28.9 161 152-315 103-282 (663)
109 PRK11697 putative two-componen 99.6 1.8E-14 4.6E-19 119.9 15.0 113 683-800 3-117 (239)
110 PRK11644 sensory histidine kin 99.6 1.7E-13 4.3E-18 113.1 18.7 206 401-651 286-496 (497)
111 PRK11091 aerobic respiration c 99.6 8E-14 2E-18 115.4 16.8 142 144-288 139-281 (779)
112 COG3920 Signal transduction hi 99.6 1.5E-12 3.8E-17 106.4 20.3 210 399-652 2-216 (221)
113 PRK10100 DNA-binding transcrip 99.6 9.5E-14 2.4E-18 114.8 13.6 120 680-803 9-129 (216)
114 COG4567 Response regulator con 99.5 1.8E-13 4.7E-18 112.8 13.0 114 683-798 11-124 (182)
115 TIGR02915 PEP_resp_reg putativ 99.5 1.2E-13 3.1E-18 114.1 12.0 111 684-800 1-119 (451)
116 COG4585 Signal transduction hi 99.5 4.5E-12 1.1E-16 103.0 19.6 182 431-651 182-365 (365)
117 PRK10060 RNase II stability mo 99.5 3.2E-12 8.3E-17 104.0 18.2 571 169-798 16-657 (663)
118 PRK03660 anti-sigma F factor; 99.5 2.2E-13 5.7E-18 112.2 11.6 102 529-651 36-138 (146)
119 COG2201 CheB Chemotaxis respon 99.5 1.5E-12 3.8E-17 106.4 12.5 102 683-787 3-108 (350)
120 PRK13559 hypothetical protein; 99.4 1.5E-11 3.9E-16 99.3 16.4 119 24-149 42-163 (363)
121 PRK11475 DNA-binding transcrip 99.4 3.5E-12 8.8E-17 103.8 11.6 106 695-802 4-116 (205)
122 COG2972 Predicted signal trans 99.4 6.8E-11 1.7E-15 94.7 16.5 184 425-652 264-453 (456)
123 TIGR02040 PpsR-CrtJ transcript 99.4 1.8E-11 4.5E-16 98.8 13.4 357 32-407 1-377 (453)
124 pfam00989 PAS PAS fold. The PA 99.4 2.8E-12 7.1E-17 104.5 9.2 112 27-145 1-112 (112)
125 PRK13558 bacterio-opsin activa 99.4 2.9E-12 7.4E-17 104.4 7.9 136 159-296 157-295 (674)
126 PRK13558 bacterio-opsin activa 99.4 3.8E-11 9.8E-16 96.5 13.5 121 291-414 161-285 (674)
127 COG4564 Signal transduction hi 99.3 1.7E-09 4.4E-14 84.8 20.5 189 429-653 259-449 (459)
128 pfam00989 PAS PAS fold. The PA 99.3 3.2E-11 8.2E-16 97.0 11.6 109 161-273 2-112 (112)
129 pfam08448 PAS_4 PAS fold. The 99.3 5.7E-12 1.5E-16 102.3 7.1 108 167-277 2-109 (110)
130 pfam08448 PAS_4 PAS fold. The 99.3 2.7E-11 6.8E-16 97.6 10.2 41 33-73 1-41 (110)
131 COG3850 NarQ Signal transducti 99.3 2.4E-09 6.1E-14 83.8 19.6 187 425-650 374-567 (574)
132 COG3851 UhpB Signal transducti 99.3 1.1E-09 2.8E-14 86.2 17.2 184 422-651 305-494 (497)
133 COG3707 AmiR Response regulato 99.3 1.2E-10 3E-15 93.1 11.5 117 680-799 4-121 (194)
134 PRK11360 sensory histidine kin 99.2 6.9E-09 1.8E-13 80.6 17.5 128 155-288 256-384 (607)
135 TIGR00229 sensory_box PAS doma 99.2 1.4E-10 3.6E-15 92.5 8.1 128 24-154 2-129 (130)
136 TIGR00229 sensory_box PAS doma 99.1 1.4E-09 3.6E-14 85.4 11.8 125 157-283 2-130 (130)
137 pfam00512 HisKA His Kinase A ( 99.1 9.9E-11 2.5E-15 93.6 5.6 65 420-485 2-66 (66)
138 COG3279 LytT Response regulato 99.1 5.2E-10 1.3E-14 88.5 9.1 112 683-798 3-116 (244)
139 COG3275 LytS Putative regulato 99.1 3.6E-08 9.1E-13 75.5 17.1 157 463-653 388-553 (557)
140 PRK11006 phoR phosphate regulo 99.0 1.6E-08 4E-13 78.1 12.8 119 148-284 86-205 (431)
141 TIGR02040 PpsR-CrtJ transcript 99.0 1.4E-08 3.5E-13 78.5 12.2 165 206-371 40-223 (453)
142 COG3829 RocR Transcriptional r 99.0 1.8E-07 4.6E-12 70.6 17.0 233 29-291 3-237 (560)
143 cd00082 HisKA Histidine Kinase 98.9 1.8E-09 4.7E-14 84.6 5.6 64 418-481 2-65 (65)
144 smart00388 HisKA His Kinase A 98.9 2.5E-09 6.3E-14 83.7 6.1 65 420-485 2-66 (66)
145 PRK11073 glnL nitrogen regulat 98.9 8.4E-08 2.2E-12 72.9 13.4 115 30-159 10-125 (348)
146 PRK11107 hybrid sensory histid 98.9 1.3E-07 3.4E-12 71.5 13.4 112 680-797 535-648 (920)
147 COG3829 RocR Transcriptional r 98.9 1E-07 2.6E-12 72.3 12.6 228 164-415 5-233 (560)
148 smart00448 REC cheY-homologous 98.8 1.7E-08 4.4E-13 77.7 8.4 54 683-738 2-55 (55)
149 KOG0787 consensus 98.7 2.8E-07 7.1E-12 69.3 11.7 149 490-655 216-384 (414)
150 TIGR02966 phoR_proteo phosphat 98.7 3.9E-07 1E-11 68.2 11.3 112 24-153 3-116 (339)
151 pfam08447 PAS_3 PAS fold. The 98.6 3.5E-07 8.9E-12 68.6 9.9 88 182-270 1-90 (90)
152 COG2202 AtoS FOG: PAS/PAC doma 98.6 2.1E-05 5.4E-10 56.0 17.6 228 40-279 2-231 (232)
153 PRK09959 hybrid sensory histid 98.6 4E-06 1E-10 61.1 13.8 43 21-63 570-612 (1197)
154 pfam06490 FleQ Flagellar regul 98.6 2.4E-06 6.2E-11 62.6 12.6 107 683-798 1-107 (109)
155 KOG3558 consensus 98.5 1.8E-06 4.6E-11 63.5 10.2 213 168-389 126-363 (768)
156 COG2202 AtoS FOG: PAS/PAC doma 98.5 0.00015 3.9E-09 50.0 20.9 227 174-407 3-231 (232)
157 COG5002 VicK Signal transducti 98.5 1.4E-05 3.6E-10 57.3 14.3 135 142-285 92-227 (459)
158 cd00130 PAS PAS domain; PAS mo 98.5 6.1E-06 1.6E-10 59.8 12.4 101 170-273 2-103 (103)
159 COG3706 PleD Response regulato 98.5 2E-07 5.2E-12 70.2 4.9 13 273-285 142-154 (435)
160 PRK04069 serine-protein kinase 98.4 5.9E-06 1.5E-10 59.9 11.4 97 531-648 41-140 (158)
161 TIGR01052 top6b DNA topoisomer 98.4 1.1E-06 2.9E-11 64.9 7.6 42 289-332 198-240 (662)
162 COG1389 DNA topoisomerase VI, 98.4 3.8E-06 9.8E-11 61.2 10.1 33 169-202 204-236 (538)
163 cd00130 PAS PAS domain; PAS mo 98.4 2.2E-06 5.6E-11 62.9 8.7 103 36-145 1-103 (103)
164 PRK04184 DNA topoisomerase VI 98.3 7.6E-06 1.9E-10 59.1 10.3 19 173-191 206-224 (533)
165 TIGR01925 spIIAB anti-sigma F 98.3 1.2E-06 2.9E-11 64.9 5.9 97 531-648 38-135 (137)
166 PRK00095 mutL DNA mismatch rep 98.3 1.5E-06 3.9E-11 64.1 6.2 14 170-183 182-195 (612)
167 pfam08447 PAS_3 PAS fold. The 98.3 1.8E-06 4.6E-11 63.6 5.4 87 310-397 1-89 (90)
168 PRK11086 sensory histidine kin 98.2 0.00056 1.4E-08 46.0 17.9 115 158-286 219-335 (541)
169 TIGR00585 mutl DNA mismatch re 98.2 5.4E-06 1.4E-10 60.2 6.4 57 533-609 23-79 (367)
170 PRK10820 DNA-binding transcrip 98.2 2.7E-05 6.8E-10 55.3 9.6 109 158-276 78-188 (513)
171 KOG3558 consensus 98.1 0.00023 5.9E-09 48.7 14.3 229 28-270 120-373 (768)
172 PRK10820 DNA-binding transcrip 98.1 0.00014 3.7E-09 50.1 13.0 45 27-71 80-124 (513)
173 COG2172 RsbW Anti-sigma regula 98.1 7.1E-05 1.8E-09 52.3 10.5 93 529-642 37-131 (146)
174 smart00091 PAS PAS domain. PAS 98.1 9.1E-06 2.3E-10 58.6 5.6 57 162-220 3-59 (67)
175 smart00091 PAS PAS domain. PAS 98.0 2.6E-06 6.6E-11 62.4 1.7 50 28-77 2-51 (67)
176 COG5000 NtrY Signal transducti 97.8 0.0024 6.2E-08 41.5 13.8 111 164-283 374-484 (712)
177 COG3290 CitA Signal transducti 97.7 0.005 1.3E-07 39.3 14.8 120 153-286 208-330 (537)
178 COG0323 MutL DNA mismatch repa 97.7 9E-05 2.3E-09 51.6 5.6 35 279-316 268-304 (638)
179 PRK10841 hybrid sensory kinase 97.7 0.0056 1.4E-07 38.9 16.1 113 152-289 349-462 (947)
180 KOG3559 consensus 97.5 0.001 2.6E-08 44.1 8.8 233 166-414 85-342 (598)
181 KOG3753 consensus 97.3 0.0017 4.3E-08 42.6 8.2 295 172-481 194-535 (1114)
182 PRK11388 DNA-binding transcrip 97.3 0.016 4.2E-07 35.6 13.6 47 292-339 207-253 (639)
183 KOG0501 consensus 97.2 0.0043 1.1E-07 39.8 9.5 117 26-150 13-138 (971)
184 COG3852 NtrB Signal transducti 97.0 0.016 4.1E-07 35.7 10.7 95 26-129 6-101 (363)
185 PRK05218 heat shock protein 90 97.0 0.0017 4.4E-08 42.5 5.3 16 784-799 597-612 (612)
186 PTZ00272 heat shock protein 83 96.9 0.0071 1.8E-07 38.2 8.1 60 682-751 603-662 (701)
187 KOG0519 consensus 96.8 0.0038 9.6E-08 40.1 6.2 214 421-636 387-619 (786)
188 COG5385 Uncharacterized protei 96.8 0.046 1.2E-06 32.5 14.2 188 422-650 17-213 (214)
189 PRK13566 anthranilate synthase 96.7 0.021 5.5E-07 34.8 9.0 83 677-764 519-605 (724)
190 KOG3560 consensus 96.6 0.058 1.5E-06 31.8 11.7 216 166-399 117-381 (712)
191 PRK11388 DNA-binding transcrip 96.5 0.071 1.8E-06 31.1 17.0 160 31-212 66-253 (639)
192 pfam08670 MEKHLA MEKHLA domain 96.4 0.073 1.9E-06 31.1 12.7 105 25-136 30-136 (148)
193 KOG3560 consensus 96.4 0.05 1.3E-06 32.2 9.4 226 30-275 114-385 (712)
194 pfam03709 OKR_DC_1_N Orn/Lys/A 96.4 0.042 1.1E-06 32.7 9.0 68 692-764 5-72 (111)
195 COG2461 Uncharacterized conser 96.2 0.014 3.5E-07 36.2 5.7 116 287-410 289-404 (409)
196 TIGR01124 ilvA_2Cterm threonin 96.1 0.11 2.7E-06 29.9 11.1 16 55-70 54-69 (508)
197 TIGR01924 rsbW_low_gc anti-sig 96.0 0.016 4E-07 35.8 5.2 101 530-650 41-146 (161)
198 COG3283 TyrR Transcriptional r 95.9 0.031 7.9E-07 33.7 6.2 60 160-221 80-139 (511)
199 COG0326 HtpG Molecular chapero 95.7 0.0036 9.3E-08 40.2 1.1 13 294-306 199-211 (623)
200 KOG1229 consensus 95.7 0.014 3.7E-07 36.0 4.1 108 159-269 156-265 (775)
201 KOG1979 consensus 95.5 0.025 6.4E-07 34.4 4.7 14 530-543 502-515 (694)
202 PTZ00130 heat shock protein 90 95.5 0.033 8.5E-07 33.4 5.2 13 621-633 640-652 (824)
203 KOG0501 consensus 95.4 0.049 1.2E-06 32.3 5.9 98 179-278 39-138 (971)
204 pfam08670 MEKHLA MEKHLA domain 95.4 0.2 5.1E-06 28.0 11.8 102 165-269 36-141 (148)
205 KOG3559 consensus 95.4 0.21 5.2E-06 27.9 13.1 226 27-277 79-333 (598)
206 COG3283 TyrR Transcriptional r 95.2 0.23 5.8E-06 27.6 8.9 50 27-76 80-129 (511)
207 KOG1229 consensus 94.9 0.014 3.6E-07 36.1 1.8 103 291-395 160-263 (775)
208 COG0313 Predicted methyltransf 94.8 0.29 7.4E-06 26.9 9.1 20 686-705 161-180 (275)
209 KOG1978 consensus 94.8 0.036 9.3E-07 33.2 3.7 18 782-799 631-648 (672)
210 KOG3561 consensus 94.8 0.055 1.4E-06 31.9 4.6 83 302-385 376-458 (803)
211 smart00086 PAC Motif C-termina 94.6 0.12 3E-06 29.6 5.9 32 244-275 11-42 (43)
212 COG2461 Uncharacterized conser 94.1 0.2 5E-06 28.0 6.1 31 599-629 319-352 (409)
213 COG4999 Uncharacterized domain 94.1 0.3 7.6E-06 26.7 7.1 106 680-794 10-120 (140)
214 PRK09224 threonine dehydratase 94.1 0.42 1.1E-05 25.7 10.1 31 683-713 464-495 (504)
215 KOG1977 consensus 94.0 0.13 3.2E-06 29.4 5.0 26 580-605 764-792 (1142)
216 smart00086 PAC Motif C-termina 93.9 0.17 4.2E-06 28.6 5.6 41 364-404 3-43 (43)
217 pfam10090 DUF2328 Uncharacteri 93.8 0.48 1.2E-05 25.3 18.5 175 436-647 2-179 (181)
218 KOG3753 consensus 93.7 0.12 3.1E-06 29.5 4.5 79 173-254 332-416 (1114)
219 PRK12483 threonine dehydratase 92.8 0.66 1.7E-05 24.3 10.3 30 683-712 481-511 (521)
220 PRK05559 DNA topoisomerase IV 92.4 0.03 7.6E-07 33.8 -0.2 16 173-188 62-77 (633)
221 PRK08526 threonine dehydratase 92.3 0.76 1.9E-05 23.9 9.6 13 697-709 388-400 (403)
222 KOG3561 consensus 92.2 0.36 9.2E-06 26.2 5.2 53 165-219 100-152 (803)
223 TIGR01815 TrpE-clade3 anthrani 91.7 0.59 1.5E-05 24.7 5.8 59 584-650 570-636 (726)
224 cd01844 SGNH_hydrolase_like_6 90.8 1.1 2.7E-05 22.9 6.6 34 728-762 58-100 (177)
225 TIGR01058 parE_Gpos DNA topois 90.5 0.5 1.3E-05 25.2 4.5 31 361-391 256-288 (655)
226 KOG0019 consensus 90.4 0.11 2.8E-06 29.9 1.0 15 620-634 520-534 (656)
227 COG5381 Uncharacterized protei 89.6 0.78 2E-05 23.8 4.9 70 534-621 65-149 (184)
228 PRK08639 threonine dehydratase 89.3 1.4 3.6E-05 22.0 9.5 29 691-719 387-415 (418)
229 KOG0020 consensus 89.0 0.29 7.3E-06 26.9 2.3 23 280-303 260-282 (785)
230 PTZ00109 DNA gyrase subunit b; 88.6 0.31 8E-06 26.6 2.2 22 736-759 882-903 (941)
231 TIGR00614 recQ_fam ATP-depende 88.4 0.73 1.9E-05 24.0 4.0 38 145-185 110-148 (497)
232 PRK05644 gyrB DNA gyrase subun 87.8 0.1 2.6E-06 30.0 -0.6 46 711-759 637-683 (725)
233 PRK02645 ppnK inorganic polyph 87.0 1.9 5E-05 21.0 8.6 10 303-312 176-185 (304)
234 PRK10669 putative cation:proto 86.9 2 5E-05 21.0 8.8 105 684-800 443-548 (558)
235 smart00433 TOP2c Topoisomerase 86.8 0.19 4.8E-06 28.2 0.2 14 41-54 27-40 (594)
236 PRK03612 spermidine synthase; 86.6 2 5.2E-05 20.9 8.2 79 682-763 318-412 (516)
237 PTZ00108 DNA topoisomerase II; 86.1 1.3 3.4E-05 22.2 4.3 50 581-632 859-918 (1506)
238 pfam02310 B12-binding B12 bind 85.9 2.2 5.6E-05 20.6 10.2 73 691-765 14-91 (121)
239 cd02068 radical_SAM_B12_BD B12 85.2 2.4 6E-05 20.4 9.7 89 694-784 5-96 (127)
240 TIGR02373 photo_yellow photoac 85.1 0.9 2.3E-05 23.4 3.0 45 295-340 25-69 (126)
241 COG3887 Predicted signaling pr 84.9 2.4 6.2E-05 20.3 7.9 39 24-62 72-110 (655)
242 COG1171 IlvA Threonine dehydra 84.5 2.5 6.5E-05 20.2 12.2 62 711-774 159-221 (347)
243 PRK13719 conjugal transfer tra 82.1 2.1 5.5E-05 20.7 3.9 32 31-62 23-54 (220)
244 TIGR01055 parE_Gneg DNA topois 80.9 2.4 6E-05 20.4 3.8 45 295-340 240-284 (647)
245 PRK01581 speE spermidine synth 80.5 3.5 9E-05 19.2 6.5 13 722-734 210-222 (363)
246 PRK08198 threonine dehydratase 80.2 3.6 9.2E-05 19.1 10.9 14 696-709 390-403 (406)
247 PRK06382 threonine dehydratase 79.1 3.9 9.9E-05 18.9 10.1 17 693-709 382-398 (400)
248 COG0503 Apt Adenine/guanine ph 78.9 3.4 8.7E-05 19.3 4.1 92 582-712 56-150 (179)
249 PRK13374 purine nucleoside pho 78.8 4 0.0001 18.8 5.5 54 524-597 17-71 (233)
250 COG0512 PabA Anthranilate/para 78.6 4 0.0001 18.8 6.9 59 586-648 50-110 (191)
251 PRK07334 threonine dehydratase 78.4 4.1 0.0001 18.8 9.6 14 696-709 384-397 (399)
252 TIGR01134 purF amidophosphorib 78.4 2 5.2E-05 20.9 2.8 18 512-529 390-409 (467)
253 KOG0355 consensus 77.6 4 0.0001 18.8 4.2 22 780-802 791-812 (842)
254 cd02070 corrinoid_protein_B12- 77.1 4.4 0.00011 18.5 10.7 80 689-771 93-181 (201)
255 COG2820 Udp Uridine phosphoryl 77.0 4.4 0.00011 18.5 6.1 56 522-597 18-73 (248)
256 cd02067 B12-binding B12 bindin 76.4 4.6 0.00012 18.4 10.8 95 689-787 10-111 (119)
257 COG0187 GyrB Type IIA topoisom 75.9 0.93 2.4E-05 23.3 0.5 15 526-540 452-466 (635)
258 KOG1562 consensus 75.7 4.8 0.00012 18.2 7.1 61 684-746 148-214 (337)
259 TIGR00078 nadC nicotinate-nucl 74.9 5 0.00013 18.1 8.3 91 684-783 159-259 (276)
260 COG3284 AcoR Transcriptional a 74.1 5.3 0.00013 18.0 7.6 28 169-196 231-258 (606)
261 PRK13585 1-(5-phosphoribosyl)- 73.8 5.3 0.00014 17.9 8.2 84 711-796 147-239 (240)
262 TIGR03471 HpnJ hopanoid biosyn 73.7 5.4 0.00014 17.9 6.4 17 735-751 411-427 (472)
263 PRK10909 rsmD 16S rRNA m(2)G96 73.4 5.5 0.00014 17.9 5.9 48 684-734 78-127 (198)
264 PRK05866 short chain dehydroge 73.2 5.5 0.00014 17.8 9.7 23 737-759 239-261 (290)
265 PRK05819 deoD purine nucleosid 72.4 5.7 0.00015 17.7 5.4 53 524-596 16-69 (235)
266 PRK08558 adenine phosphoribosy 71.4 6 0.00015 17.5 9.5 93 582-711 114-209 (238)
267 pfam07568 HisKA_2 Histidine ki 71.1 6.1 0.00016 17.5 8.4 71 427-504 2-73 (76)
268 cd06342 PBP1_ABC_LIVBP_like Ty 70.8 6.2 0.00016 17.5 11.2 10 787-796 296-305 (334)
269 TIGR02153 gatD_arch glutamyl-t 69.5 1.9 4.7E-05 21.2 0.8 46 590-638 293-345 (413)
270 COG4122 Predicted O-methyltran 69.4 6.6 0.00017 17.3 7.1 70 683-756 86-160 (219)
271 PRK13117 consensus 69.2 6.7 0.00017 17.2 4.7 18 623-640 164-181 (268)
272 PRK07765 para-aminobenzoate sy 68.7 6.8 0.00017 17.2 4.5 59 588-649 53-113 (221)
273 PRK03659 glutathione-regulated 68.5 6.9 0.00018 17.1 9.3 90 684-783 426-517 (602)
274 PRK05752 uroporphyrinogen-III 67.1 7.3 0.00019 17.0 13.9 109 681-803 130-255 (255)
275 TIGR01059 gyrB DNA gyrase, B s 66.9 3.2 8.1E-05 19.5 1.6 13 532-544 732-744 (818)
276 PRK05899 transketolase; Review 66.7 7.5 0.00019 16.9 9.5 15 786-800 647-661 (661)
277 COG1568 Predicted methyltransf 65.9 5.5 0.00014 17.9 2.6 10 427-436 206-215 (354)
278 cd02012 TPP_TK Thiamine pyroph 65.9 7.7 0.0002 16.8 4.7 14 781-794 241-254 (255)
279 PRK06608 threonine dehydratase 65.4 7.9 0.0002 16.7 10.7 35 684-721 255-289 (330)
280 TIGR01622 SF-CC1 splicing fact 64.7 6.5 0.00017 17.3 2.8 15 624-638 465-479 (531)
281 PRK05670 anthranilate synthase 64.6 8.2 0.00021 16.6 4.5 56 589-648 51-108 (192)
282 PRK07649 para-aminobenzoate/an 64.4 8.2 0.00021 16.6 5.1 59 588-650 50-110 (195)
283 PRK03562 glutathione-regulated 63.5 8.5 0.00022 16.5 9.4 92 682-783 423-516 (615)
284 cd01367 KISc_KIF2_like Kinesin 63.4 8.6 0.00022 16.5 3.7 16 164-179 79-94 (322)
285 TIGR01090 apt adenine phosphor 63.4 8.6 0.00022 16.5 4.0 32 681-712 114-148 (175)
286 pfam07364 DUF1485 Protein of u 63.0 8.7 0.00022 16.4 6.5 12 710-721 279-290 (292)
287 PRK04128 1-(5-phosphoribosyl)- 62.9 8.8 0.00022 16.4 7.5 85 704-793 135-226 (228)
288 COG0421 SpeE Spermidine syntha 62.7 8.8 0.00022 16.4 6.7 19 684-702 103-121 (282)
289 COG0742 N6-adenine-specific me 62.3 9 0.00023 16.3 5.3 52 683-735 68-122 (187)
290 cd06346 PBP1_ABC_ligand_bindin 61.9 9.1 0.00023 16.3 15.5 83 684-770 142-233 (312)
291 pfam01596 Methyltransf_3 O-met 61.9 9.1 0.00023 16.3 8.0 54 683-736 71-129 (204)
292 TIGR00336 pyrE orotate phospho 61.3 9.3 0.00024 16.2 5.0 65 680-762 116-182 (187)
293 PRK06774 para-aminobenzoate sy 61.2 9.3 0.00024 16.2 4.7 61 586-650 48-110 (191)
294 PRK08007 para-aminobenzoate sy 60.6 9.6 0.00024 16.1 4.8 58 588-649 50-109 (187)
295 PRK13943 protein-L-isoaspartat 60.5 9.6 0.00025 16.1 5.3 16 301-316 258-273 (317)
296 PRK01390 murD UDP-N-acetylmura 60.0 9.8 0.00025 16.1 9.6 12 428-439 284-295 (457)
297 pfam07310 PAS_5 PAS domain. Th 59.6 9.9 0.00025 16.0 8.1 82 181-268 52-134 (137)
298 pfam08446 PAS_2 PAS fold. The 58.7 10 0.00026 15.9 8.6 43 178-222 24-66 (107)
299 PRK05637 anthranilate synthase 58.6 10 0.00026 15.9 4.8 60 586-650 49-110 (208)
300 cd06268 PBP1_ABC_transporter_L 58.1 10 0.00027 15.9 12.1 83 684-770 139-231 (298)
301 CHL00101 trpG anthranilate syn 58.0 11 0.00027 15.8 5.0 33 614-649 77-109 (190)
302 TIGR01754 flav_RNR ribonucleot 57.9 11 0.00027 15.8 4.1 75 691-765 15-96 (145)
303 PRK13116 consensus 57.8 11 0.00027 15.8 4.5 18 622-639 163-180 (278)
304 PRK00654 glgA glycogen synthas 57.7 11 0.00027 15.8 9.7 22 779-800 417-438 (476)
305 PRK05848 nicotinate-nucleotide 57.1 11 0.00028 15.7 8.8 85 693-783 167-254 (272)
306 cd06335 PBP1_ABC_ligand_bindin 56.7 11 0.00028 15.7 12.8 73 692-768 153-232 (347)
307 cd01743 GATase1_Anthranilate_S 56.5 11 0.00028 15.7 4.1 56 588-647 49-106 (184)
308 cd06348 PBP1_ABC_ligand_bindin 56.2 11 0.00029 15.6 11.8 22 741-762 204-225 (344)
309 TIGR02329 propionate_PrpR prop 55.9 7.2 0.00018 17.0 1.8 46 158-203 195-240 (658)
310 PRK13119 consensus 55.2 12 0.0003 15.5 4.5 19 622-640 161-179 (261)
311 COG1092 Predicted SAM-dependen 55.1 12 0.0003 15.5 8.0 12 533-544 311-322 (393)
312 TIGR01422 phosphonatase phosph 54.8 11 0.00029 15.6 2.7 15 582-596 175-189 (199)
313 PRK13944 protein-L-isoaspartat 54.7 12 0.0003 15.5 5.1 72 684-763 100-174 (205)
314 PRK07048 serine/threonine dehy 54.5 12 0.0003 15.5 8.6 36 684-722 255-290 (321)
315 PRK04457 spermidine synthase; 54.5 12 0.0003 15.5 7.4 17 684-700 93-109 (262)
316 cd02069 methionine_synthase_B1 54.3 12 0.00031 15.4 8.4 73 689-764 99-177 (213)
317 KOG1985 consensus 54.2 12 0.00031 15.4 3.6 48 142-189 300-353 (887)
318 pfam00290 Trp_syntA Tryptophan 53.2 13 0.00032 15.3 4.7 20 621-640 154-173 (258)
319 PRK13114 consensus 53.1 13 0.00032 15.3 4.7 16 623-638 160-175 (266)
320 PRK04759 consensus 52.8 13 0.00032 15.3 11.0 15 529-543 106-120 (294)
321 TIGR00644 recJ single-stranded 52.5 13 0.00033 15.2 2.9 38 169-207 137-182 (705)
322 COG2061 ACT-domain-containing 51.9 13 0.00033 15.2 5.9 32 712-744 99-130 (170)
323 PRK13112 consensus 51.9 13 0.00033 15.2 4.4 16 623-638 165-180 (279)
324 smart00852 MoCF_biosynth Proba 51.4 13 0.00034 15.1 6.2 47 691-737 17-67 (135)
325 PRK04965 nitric oxide reductas 51.1 7.5 0.00019 16.9 1.3 17 39-55 29-45 (378)
326 pfam00497 SBP_bac_3 Bacterial 51.1 13 0.00034 15.1 7.3 51 681-735 110-160 (224)
327 PRK06567 putative bifunctional 51.1 13 0.00034 15.1 4.1 159 595-771 832-997 (1048)
328 cd06349 PBP1_ABC_ligand_bindin 50.6 14 0.00035 15.0 11.7 69 692-764 150-225 (340)
329 TIGR01634 tail_P2_I phage tail 50.1 11 0.00028 15.7 2.0 49 598-651 62-115 (139)
330 TIGR01127 ilvA_1Cterm threonin 50.0 14 0.00036 15.0 11.5 46 420-481 228-274 (381)
331 TIGR02472 sucr_P_syn_N sucrose 50.0 14 0.00036 15.0 4.0 18 528-545 397-414 (445)
332 PRK11057 ATP-dependent DNA hel 49.9 14 0.00036 15.0 4.4 26 161-186 130-155 (607)
333 PRK13587 1-(5-phosphoribosyl)- 48.1 15 0.00038 14.8 8.9 80 704-785 140-223 (234)
334 PRK11188 rrmJ 23S rRNA methylt 48.0 13 0.00032 15.3 2.0 24 726-750 116-139 (209)
335 cd01364 KISc_BimC_Eg5 Kinesin 47.7 15 0.00039 14.7 4.7 16 164-179 76-91 (352)
336 PRK06543 nicotinate-nucleotide 47.3 15 0.00039 14.7 11.3 81 694-783 180-263 (281)
337 TIGR03365 Bsubt_queE 7-cyano-7 47.2 15 0.00039 14.7 5.3 62 697-762 92-161 (238)
338 pfam10087 DUF2325 Uncharacteri 47.0 16 0.0004 14.7 10.7 88 684-774 2-92 (96)
339 TIGR02789 nickel_nikB nickel A 46.2 11 0.00027 15.8 1.4 25 614-642 236-263 (315)
340 PRK08857 para-aminobenzoate sy 46.0 16 0.00041 14.6 4.4 33 614-649 77-109 (192)
341 pfam05127 DUF699 Putative ATPa 45.4 16 0.0004 14.6 2.2 37 584-621 78-120 (160)
342 PRK09522 bifunctional anthrani 45.0 17 0.00042 14.5 7.5 49 635-707 363-411 (531)
343 PRK13121 consensus 44.9 17 0.00042 14.4 4.1 11 790-800 254-264 (265)
344 TIGR01389 recQ ATP-dependent D 44.7 17 0.00043 14.4 7.8 26 159-184 116-141 (607)
345 TIGR03253 oxalate_frc formyl-C 44.5 17 0.00043 14.4 3.7 12 591-602 399-410 (415)
346 pfam00994 MoCF_biosynth Probab 44.4 17 0.00043 14.4 5.4 43 692-734 17-63 (140)
347 pfam02254 TrkA_N TrkA-N domain 44.4 17 0.00043 14.4 9.0 87 683-778 22-109 (115)
348 pfam01861 DUF43 Protein of unk 44.0 17 0.00044 14.4 4.1 46 583-630 95-140 (243)
349 pfam03602 Cons_hypoth95 Conser 43.9 17 0.00044 14.3 6.5 66 684-751 69-137 (181)
350 COG5301 Phage-related tail fib 43.7 17 0.00044 14.3 2.5 49 573-647 476-526 (587)
351 COG2085 Predicted dinucleotide 43.6 17 0.00044 14.3 5.4 39 681-719 148-186 (211)
352 PRK06815 hypothetical protein; 43.6 17 0.00044 14.3 9.8 25 684-709 253-277 (318)
353 cd00134 PBPb Bacterial peripla 43.5 17 0.00045 14.3 13.3 99 681-801 105-203 (218)
354 PRK03220 consensus 43.4 17 0.00045 14.3 11.2 88 708-797 155-251 (257)
355 PRK03378 ppnK inorganic polyph 43.2 18 0.00045 14.3 10.6 14 530-543 106-119 (292)
356 PRK13118 consensus 43.1 18 0.00045 14.3 4.4 16 623-638 164-179 (269)
357 PRK13942 protein-L-isoaspartat 43.1 18 0.00045 14.3 5.0 53 684-740 104-158 (214)
358 COG0608 RecJ Single-stranded D 43.1 18 0.00045 14.3 6.3 22 584-605 410-431 (491)
359 COG1158 Rho Transcription term 42.4 6.5 0.00017 17.3 -0.2 31 586-627 322-353 (422)
360 PRK03958 tRNA 2'-O-methylase; 42.2 18 0.00046 14.2 9.4 78 683-765 33-112 (175)
361 PRK06106 nicotinate-nucleotide 42.0 18 0.00047 14.1 10.5 90 684-783 165-262 (281)
362 PRK05398 formyl-coenzyme A tra 41.8 18 0.00047 14.1 2.7 12 591-602 400-411 (416)
363 cd02072 Glm_B12_BD B12 binding 41.6 19 0.00047 14.1 12.3 103 691-796 13-127 (128)
364 PRK02155 ppnK inorganic polyph 41.6 19 0.00047 14.1 12.7 12 531-542 107-118 (291)
365 TIGR01367 pyrE_Therm orotate p 41.2 19 0.00048 14.1 2.5 30 615-644 123-153 (205)
366 COG0157 NadC Nicotinate-nucleo 41.2 19 0.00048 14.1 11.0 91 684-783 161-260 (280)
367 PRK01231 ppnK inorganic polyph 41.0 19 0.00048 14.0 11.2 11 173-183 66-76 (296)
368 pfam02882 THF_DHG_CYH_C Tetrah 40.9 19 0.00048 14.0 5.5 58 680-740 35-92 (159)
369 pfam00977 His_biosynth Histidi 40.6 19 0.00049 14.0 7.8 70 710-781 145-217 (229)
370 cd03823 GT1_ExpE7_like This fa 40.5 19 0.00049 14.0 11.0 107 683-802 222-330 (359)
371 PRK12678 transcription termina 40.2 3.7 9.6E-05 19.0 -1.7 31 586-627 560-591 (667)
372 TIGR00007 TIGR00007 phosphorib 40.2 20 0.0005 14.0 7.1 77 705-781 144-225 (241)
373 PRK02261 methylaspartate mutas 39.7 20 0.00051 13.9 13.4 108 689-801 14-136 (137)
374 COG0813 DeoD Purine-nucleoside 39.7 20 0.00051 13.9 2.7 53 525-596 18-70 (236)
375 cd06358 PBP1_NHase Type I peri 39.2 20 0.00051 13.9 12.4 69 692-764 147-222 (333)
376 cd01534 4RHOD_Repeat_3 Member 38.9 20 0.00052 13.8 3.1 36 682-717 57-92 (95)
377 PRK01033 imidazole glycerol ph 38.6 21 0.00053 13.8 7.2 55 712-768 152-209 (253)
378 PRK13131 consensus 38.5 21 0.00053 13.8 4.6 18 623-640 157-174 (257)
379 COG0514 RecQ Superfamily II DN 38.5 21 0.00053 13.8 8.0 25 161-185 122-146 (590)
380 COG3480 SdrC Predicted secrete 37.7 21 0.00054 13.7 5.2 86 525-629 155-249 (342)
381 PRK13113 consensus 37.6 21 0.00054 13.7 4.2 19 622-640 163-181 (263)
382 PRK12608 transcription termina 37.0 22 0.00056 13.6 2.0 32 547-605 265-296 (379)
383 cd00758 MoCF_BD MoCF_BD: molyb 37.0 22 0.00056 13.6 5.3 13 529-541 44-56 (133)
384 COG0106 HisA Phosphoribosylfor 36.5 22 0.00056 13.6 9.6 91 704-796 139-239 (241)
385 PRK04346 tryptophan synthase s 36.5 22 0.00056 13.6 8.4 63 699-767 318-385 (392)
386 PRK00050 mraW S-adenosyl-methy 36.4 22 0.00057 13.6 7.7 13 308-320 73-85 (309)
387 pfam08415 NRPS Nonribosomal pe 36.4 22 0.00057 13.6 3.2 29 739-767 3-35 (57)
388 PRK00748 1-(5-phosphoribosyl)- 36.3 22 0.00057 13.6 9.6 85 711-797 144-240 (241)
389 PRK11119 proX glycine betaine 36.3 22 0.00057 13.5 6.4 11 307-317 152-162 (332)
390 TIGR00519 asnASE_I L-asparagin 35.8 16 0.0004 14.7 0.9 25 728-752 276-303 (347)
391 TIGR00735 hisF imidazoleglycer 35.6 23 0.00058 13.5 6.5 82 713-801 211-306 (312)
392 PRK02277 orotate phosphoribosy 35.2 23 0.00059 13.4 4.4 30 680-709 140-172 (201)
393 COG0159 TrpA Tryptophan syntha 34.8 23 0.0006 13.4 4.9 32 744-776 195-226 (265)
394 PRK13306 ulaD 3-keto-L-gulonat 34.7 24 0.0006 13.4 4.2 11 625-635 101-111 (216)
395 PRK08219 short chain dehydroge 34.6 24 0.0006 13.4 2.7 17 622-638 152-168 (226)
396 PRK08782 consensus 34.5 24 0.0006 13.4 10.5 72 699-777 104-178 (219)
397 COG1856 Uncharacterized homolo 34.3 24 0.00061 13.3 6.6 100 686-788 118-255 (275)
398 PRK02649 ppnK inorganic polyph 34.3 24 0.00061 13.3 10.4 15 529-543 110-124 (305)
399 TIGR01605 PYST-D Plasmodium yo 34.2 21 0.00053 13.7 1.4 12 532-543 19-30 (55)
400 KOG1251 consensus 34.0 24 0.00062 13.3 10.0 15 425-440 221-235 (323)
401 PRK09009 C factor cell-cell si 33.9 24 0.00062 13.3 2.1 13 531-543 204-216 (235)
402 TIGR02478 6PF1K_euk 6-phosphof 33.6 4 0.0001 18.8 -2.4 100 696-797 490-621 (777)
403 TIGR02991 ectoine_eutB ectoine 33.3 25 0.00063 13.2 5.5 87 695-791 128-223 (318)
404 PRK11933 yebU rRNA (cytosine-C 33.2 25 0.00064 13.2 4.1 28 283-313 214-241 (471)
405 cd03805 GT1_ALG2_like This fam 33.1 25 0.00064 13.2 4.9 84 706-802 280-365 (392)
406 PRK07589 ornithine cyclodeamin 32.7 25 0.00065 13.2 6.8 15 781-795 321-335 (346)
407 COG1819 Glycosyl transferases, 32.6 25 0.00065 13.2 4.8 99 694-802 254-369 (406)
408 PRK03525 crotonobetainyl-CoA:c 32.6 23 0.00059 13.4 1.4 18 187-204 98-115 (405)
409 PRK07577 short chain dehydroge 32.5 26 0.00065 13.1 1.7 15 529-543 202-216 (234)
410 PRK11761 cysM cysteine synthas 32.4 26 0.00065 13.1 10.4 40 684-724 231-272 (296)
411 KOG1996 consensus 32.4 24 0.0006 13.4 1.4 23 608-630 201-223 (378)
412 COG5643 Protein containing a m 32.0 26 0.00066 13.1 2.3 61 585-650 500-584 (685)
413 KOG1004 consensus 31.7 26 0.00067 13.1 7.0 27 570-596 103-129 (230)
414 TIGR01193 bacteriocin_ABC ABC- 31.7 16 0.0004 14.6 0.4 17 296-312 241-257 (710)
415 PRK09922 UDP-D-galactose:(gluc 31.5 26 0.00068 13.0 5.4 108 684-802 215-327 (361)
416 PRK13120 consensus 31.2 27 0.00068 13.0 4.3 19 622-640 167-185 (285)
417 cd02071 MM_CoA_mut_B12_BD meth 31.0 27 0.00069 13.0 13.2 104 689-795 10-120 (122)
418 cd01569 PBEF_like pre-B-cell c 31.0 27 0.00069 13.0 3.6 54 486-544 290-351 (407)
419 cd01831 Endoglucanase_E_like E 30.8 27 0.00069 12.9 3.8 36 728-763 56-104 (169)
420 pfam01135 PCMT Protein-L-isoas 30.7 27 0.00069 12.9 5.6 73 683-763 100-174 (205)
421 TIGR00749 glk glucokinase; Int 30.5 13 0.00033 15.2 -0.2 70 686-761 255-331 (342)
422 cd04723 HisA_HisF Phosphoribos 30.4 28 0.0007 12.9 8.4 67 713-782 147-216 (233)
423 TIGR01137 cysta_beta cystathio 30.3 25 0.00063 13.2 1.2 20 618-637 478-497 (527)
424 PRK10680 molybdopterin biosynt 30.0 28 0.00071 12.9 4.6 32 613-649 369-403 (411)
425 cd03804 GT1_wbaZ_like This fam 29.4 29 0.00073 12.8 5.0 54 742-802 274-327 (351)
426 cd05212 NAD_bind_m-THF_DH_Cycl 29.3 29 0.00073 12.8 6.2 58 680-740 27-84 (140)
427 PRK10792 bifunctional 5,10-met 29.3 29 0.00073 12.8 5.2 57 681-740 159-215 (288)
428 TIGR02870 spore_II_D stage II 29.1 29 0.00074 12.7 2.9 12 607-620 317-328 (358)
429 PRK07069 short chain dehydroge 28.9 29 0.00074 12.7 1.6 20 619-638 159-181 (251)
430 PRK05718 keto-hydroxyglutarate 28.8 29 0.00075 12.7 10.3 70 699-775 102-174 (212)
431 TIGR01054 rgy reverse gyrase; 28.8 25 0.00064 13.2 1.0 14 586-599 1552-1566(1843)
432 KOG0685 consensus 28.5 30 0.00075 12.7 3.0 48 549-610 256-303 (498)
433 PRK08072 nicotinate-nucleotide 28.5 30 0.00075 12.7 11.2 90 684-783 161-258 (277)
434 cd01366 KISc_C_terminal Kinesi 28.5 30 0.00076 12.7 3.9 15 165-179 73-87 (329)
435 pfam03848 TehB Tellurite resis 28.4 30 0.00076 12.7 7.3 29 526-560 105-133 (192)
436 cd01372 KISc_KIF4 Kinesin moto 28.4 30 0.00076 12.7 3.3 17 163-179 67-83 (341)
437 TIGR03572 WbuZ glycosyl amidat 28.2 30 0.00076 12.7 7.7 69 711-781 152-224 (232)
438 cd06326 PBP1_STKc_like Type I 28.1 30 0.00077 12.6 11.3 13 785-797 299-311 (336)
439 PRK00313 lpxK tetraacyldisacch 28.1 30 0.00077 12.6 6.4 14 697-710 252-265 (332)
440 cd01522 RHOD_1 Member of the R 28.1 30 0.00077 12.6 3.1 23 713-738 2-24 (117)
441 PRK11178 uridine phosphorylase 28.0 30 0.00077 12.6 5.6 55 523-598 19-74 (251)
442 TIGR02451 anti_sig_ChrR anti-s 27.9 30 0.00077 12.6 1.7 29 577-606 204-232 (234)
443 TIGR01331 bisphos_cysQ 3'(2'), 27.8 30 0.00077 12.6 1.7 14 429-442 152-166 (263)
444 TIGR02012 tigrfam_recA protein 27.7 30 0.00078 12.6 2.6 27 173-202 86-112 (322)
445 cd06336 PBP1_ABC_ligand_bindin 27.6 31 0.00078 12.6 12.0 70 693-765 154-230 (347)
446 pfam04445 DUF548 Protein of un 27.5 31 0.00078 12.6 4.2 59 680-742 96-166 (235)
447 COG4007 Predicted dehydrogenas 27.5 18 0.00047 14.2 0.1 15 530-544 311-325 (340)
448 pfam07563 DUF1541 Protein of u 27.2 31 0.00078 12.6 1.2 17 729-745 5-21 (53)
449 PRK13111 trpA tryptophan synth 27.2 31 0.00079 12.5 4.6 18 623-640 155-172 (256)
450 PRK12428 3-alpha-hydroxysteroi 27.0 31 0.0008 12.5 1.6 22 528-551 219-240 (261)
451 cd01376 KISc_KID_like Kinesin 27.0 31 0.0008 12.5 5.2 19 162-180 73-91 (319)
452 cd06327 PBP1_SBP_like_1 Peripl 27.0 31 0.0008 12.5 11.9 57 693-753 151-214 (334)
453 PRK01438 murD UDP-N-acetylmura 27.0 31 0.0008 12.5 5.9 12 428-439 299-310 (481)
454 PRK09376 rho transcription ter 26.8 6.5 0.00016 17.3 -2.3 16 586-605 318-333 (416)
455 KOG4013 consensus 26.7 32 0.00081 12.5 2.4 25 618-644 166-190 (255)
456 cd01080 NAD_bind_m-THF_DH_Cycl 26.6 32 0.00081 12.5 5.5 58 680-740 43-100 (168)
457 PRK10742 putative methyltransf 26.4 32 0.00082 12.4 3.6 61 680-744 109-181 (250)
458 cd01977 Nitrogenase_VFe_alpha 26.3 32 0.00082 12.4 9.3 72 680-756 287-361 (415)
459 cd06347 PBP1_ABC_ligand_bindin 26.2 32 0.00083 12.4 11.7 105 684-798 195-308 (334)
460 TIGR00868 hCaCC calcium-activa 26.0 33 0.00083 12.4 3.2 33 576-608 644-676 (874)
461 COG0034 PurF Glutamine phospho 26.0 33 0.00083 12.4 3.9 33 680-713 347-384 (470)
462 PRK02621 consensus 25.9 33 0.00083 12.4 10.4 83 713-797 155-247 (254)
463 PRK13138 consensus 25.8 33 0.00084 12.4 6.0 19 622-640 161-179 (264)
464 PRK06196 oxidoreductase; Provi 25.8 33 0.00084 12.4 9.2 18 620-637 190-208 (316)
465 PRK09271 flavodoxin; Provision 25.7 33 0.00084 12.3 7.6 72 689-763 13-92 (160)
466 PRK04885 ppnK inorganic polyph 25.6 33 0.00085 12.3 9.8 20 169-188 35-54 (265)
467 PRK06398 aldose dehydrogenase; 25.5 33 0.00085 12.3 1.7 17 612-628 13-29 (256)
468 cd02065 B12-binding_like B12 b 25.5 33 0.00085 12.3 8.1 64 695-760 17-85 (125)
469 PRK02145 consensus 25.5 33 0.00085 12.3 9.4 91 705-797 150-250 (257)
470 COG0702 Predicted nucleoside-d 25.1 34 0.00086 12.3 4.6 53 683-738 2-54 (275)
471 PRK00758 GMP synthase subunit 25.0 34 0.00087 12.3 7.4 73 683-761 1-73 (184)
472 pfam00117 GATase Glutamine ami 24.9 34 0.00087 12.2 4.4 47 685-733 1-47 (187)
473 TIGR01963 PHB_DH 3-hydroxybuty 24.7 34 0.00088 12.2 1.6 17 612-628 8-24 (258)
474 PRK13597 imidazole glycerol ph 24.7 34 0.00088 12.2 11.0 91 705-797 145-244 (252)
475 PRK09213 purine operon repress 24.5 35 0.00089 12.2 7.0 81 618-709 141-227 (274)
476 TIGR00689 rpiB_lacA_lacB sugar 24.4 33 0.00084 12.3 1.0 11 584-594 61-71 (146)
477 cd01542 PBP1_TreR_like Ligand- 24.4 35 0.00089 12.2 8.7 64 691-761 15-84 (259)
478 PRK12408 glucokinase; Provisio 24.3 15 0.00039 14.7 -0.7 27 612-641 152-178 (336)
479 cd06446 Trp-synth_B Tryptophan 24.1 35 0.0009 12.1 7.0 87 679-765 106-213 (365)
480 PRK01641 leuD isopropylmalate 24.1 35 0.0009 12.1 3.7 34 680-713 66-102 (201)
481 PRK08638 threonine dehydratase 23.8 36 0.00091 12.1 8.2 116 642-776 98-223 (329)
482 KOG0147 consensus 23.8 36 0.00091 12.1 1.1 56 579-635 276-345 (549)
483 TIGR01120 rpiB ribose 5-phosph 23.8 25 0.00063 13.2 0.2 9 614-622 65-73 (143)
484 PRK07707 consensus 23.7 36 0.00092 12.1 1.7 17 612-628 9-25 (239)
485 PRK06171 sorbitol-6-phosphate 23.5 36 0.00092 12.1 1.7 17 612-628 16-32 (266)
486 pfam01564 Spermine_synth Sperm 23.3 37 0.00093 12.0 8.3 82 682-763 100-190 (240)
487 TIGR02387 rpoC1_cyan DNA-direc 23.1 37 0.00094 12.0 2.2 50 526-605 333-382 (625)
488 PRK06722 exonuclease; Provisio 23.0 37 0.00094 12.0 3.9 67 687-758 32-101 (242)
489 pfam00456 Transketolase_N Tran 23.0 37 0.00094 12.0 5.8 54 681-734 174-242 (333)
490 pfam01729 QRPTase_C Quinolinat 22.8 37 0.00095 12.0 7.7 70 708-783 84-153 (169)
491 PRK13133 consensus 22.7 38 0.00096 12.0 4.0 40 743-782 80-129 (267)
492 cd06299 PBP1_LacI_like_13 Liga 22.5 38 0.00096 11.9 8.4 64 691-761 15-84 (265)
493 cd02991 UAS_ETEA UAS family, E 22.5 38 0.00096 11.9 3.1 51 742-802 65-116 (116)
494 COG2236 Predicted phosphoribos 22.4 38 0.00097 11.9 2.1 23 680-702 86-108 (192)
495 cd04731 HisF The cyclase subun 22.3 38 0.00097 11.9 9.6 91 705-797 142-242 (243)
496 TIGR02386 rpoC_TIGR DNA-direct 22.1 38 0.00096 11.9 0.9 15 591-605 414-428 (1552)
497 COG0461 PyrE Orotate phosphori 22.1 38 0.00098 11.9 8.6 95 618-766 72-174 (201)
498 COG3967 DltE Short-chain dehyd 22.0 39 0.00099 11.9 9.2 79 681-760 5-83 (245)
499 TIGR02428 pcaJ_scoB_fam 3-oxoa 21.9 39 0.00099 11.9 1.3 16 574-594 12-27 (208)
500 pfam07536 HWE_HK HWE histidine 21.8 39 0.00099 11.8 5.0 49 427-475 2-50 (83)
No 1
>PRK13557 histidine kinase; Provisional
Probab=100.00 E-value=0 Score=803.85 Aligned_cols=500 Identities=31% Similarity=0.487 Sum_probs=433.0
Q ss_pred HHHHHHHHHCCCCEEEEEE---ECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999834675099985---0206998315544444548846617986666101111220246666555411233454
Q gi|254780450|r 287 NMRFNRFFNNIPMAIASID---KKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPI 363 (803)
Q Consensus 287 e~rl~~i~e~~p~~I~~~d---~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (803)
.+.|.++++++|++|+++| +||+|+|||++|++++ ||+.++++|+++..+.+|+......+.+..++... ..+..
T Consensus 27 ~~~~~~~v~~~~~~~~~~d~~~~Dg~I~~vN~af~~~t-GYs~eEviGk~~~~L~~p~~~~~~~~~~~~~i~~~-~~~~~ 104 (538)
T PRK13557 27 SDIFFAAVETTRMPMIVTDPRQPDNPIVFANRAFLEMT-GYAAEEIIGNNCRFLQGPETDRATVADVRDAIAER-REIAT 104 (538)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCEEEEECHHHHHHH-CCCHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCC-CCEEE
T ss_conf 99999999607973899358999987999839999987-95999986999877089889999999999999759-93687
Q ss_pred CEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 04887388506899998730456677613899999850232112210123444444687630342566415899999999
Q gi|254780450|r 364 DSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSD 443 (803)
Q Consensus 364 e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ 443 (803)
|....+++|..+|...+..+.++..|...+++++..|||+||++|++|+|+|||+++|+|+++||||||||||+|+|+++
T Consensus 105 E~~n~rKDG~~~w~~~~i~pv~d~~G~~~~~~~i~~DITerk~~E~~L~qaqklealg~~~a~isHEirnPL~~I~G~~~ 184 (538)
T PRK13557 105 EILNYRKDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAEDALRQAQKMEALGQLTGGIAHDFNNLLQVMSGYLD 184 (538)
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 99998799999999989999998999999999988344499999999999999999999998878876269999999999
Q ss_pred HHHHHCC--CCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9985079--9847--88889999999888876430045421200584358534678999999998750356816999814
Q gi|254780450|r 444 HLLLQSR--SSDA--SFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDY 519 (803)
Q Consensus 444 ll~~~~~--~~~~--~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~ 519 (803)
+|..... ..+. ...++..|.++++|+..||++||+|||++....+++++++++.++..++++...+ .+.+.++.
T Consensus 185 lL~~~~~~~~~~~~~~~~~l~~i~~~~~r~~~Li~~lL~fsr~~~l~~~~~~l~~lv~~~~~l~~~~~~~--~i~l~~~~ 262 (538)
T PRK13557 185 VLQMALSKPDADRERIARSVEHIRAAAERAATLTQQLLAFARKQKLDGRVVNLNGLVSGMGEMAERTLGD--AVTIETDL 262 (538)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHCC--CEEEEEEE
T ss_conf 9986401688899999999999999999999999999997582768771772999999999999998529--91999980
Q ss_pred CCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Q ss_conf 89722699871699999999874227652067885799999850421012245566788978999999788668844542
Q gi|254780450|r 520 ERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIME 599 (803)
Q Consensus 520 ~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~ 599 (803)
++++|.+.+|+.+|+|||+||++||++| ++++|.|+|++++..........+....+|+|++|+|+|||+|||++.++
T Consensus 263 ~~~l~~~~~D~~~l~qvl~NLl~NA~~a--~~~gg~i~i~~~~~~~~~~~~~~~~~~~~g~~v~i~V~DtG~GI~~e~~~ 340 (538)
T PRK13557 263 APDLWNCRIDPTQAEVALLNVLINARDA--MPEGGRVTVRTENVEITEHDLAMYHQLPPGRYVSIAVTDTGSGMPPEILA 340 (538)
T ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
T ss_conf 7988708755899999999989879986--57897599999876415421001245788878999999868988989999
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02322221013577653038899999851675499996188942999994375766443333332222354444533347
Q gi|254780450|r 600 KIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQESHYSHDIAIIPQEEPADLTG 679 (803)
Q Consensus 600 ~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (803)
|||+||||||+.|+||||||+|||+||++|||+|+|+|++|+||||+|+||............... +.+ .+
T Consensus 341 rIFepFfttk~~~~GtGLGLaIv~~iV~~~gG~I~v~S~~G~GttF~v~lP~~~~~~~~~~~~~~~--------~~~-~~ 411 (538)
T PRK13557 341 RVMEPFFTTKEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASEQAENELAPPKAR--------AID-RG 411 (538)
T ss_pred HHHCCCEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCC--------CCC-CC
T ss_conf 772501042245787772499999999987995999932898779999986787666777788766--------533-57
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHHHCCCCCE
Q ss_conf 87569997698899999999999889899998998999899986599954899858788-98889999999986899829
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMP-EMDGPTLLRELRKTYPSLKF 758 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp-~m~G~~~~~~ir~~~~~~~i 758 (803)
.+.+|||||||+.++.+++.+|+.+||+|..|.||.|||++++++ ..|||||||++|| +|||+++++++|+..|++||
T Consensus 412 ~~~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~-~~~Dlvl~D~~MPg~mdG~el~r~ir~~~p~i~i 490 (538)
T PRK13557 412 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKV 490 (538)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 872589967989999999999997699999989999999999609-9988998877799998899999999853899839
Q ss_pred EEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 99906785899876760579807507979999999999985137
Q gi|254780450|r 759 IFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 759 i~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
|++|||+.+...+.....++++||+|||+..+|.++|+++|++.
T Consensus 491 i~~Tg~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 534 (538)
T PRK13557 491 LLTTGYAEASIERTDVGGSEFDIVNKPYRRAELARRVRMVLDGP 534 (538)
T ss_pred EEEECCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCC
T ss_conf 99979987788997752899888819899999999999986789
No 2
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=100.00 E-value=0 Score=796.11 Aligned_cols=494 Identities=22% Similarity=0.280 Sum_probs=425.2
Q ss_pred EHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 60789999999999999999998346750999850206998315544444548846617986666101111220246666
Q gi|254780450|r 272 SRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALY 351 (803)
Q Consensus 272 Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 351 (803)
.+.+|++++.+|.++...+|+++|++|+.||+.|++|+++.||++|++++ |.++.+++|++..++++++....+...-.
T Consensus 139 e~~~r~~~q~~l~~~~~llRs~~D~~Pdli~~rd~~g~f~gCNrafe~~~-G~~e~eliG~t~~d~~~~e~a~~~~~~D~ 217 (779)
T PRK11091 139 EIKEREETQIELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLT-GKSEKQLVGLTPKDVYSPEAAEKVIETDE 217 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHH-CCCHHHHCCCCHHHHCCHHHHHHHHHHHH
T ss_conf 99998999999999889999885028751578779876534109999880-99989984998355279988999997389
Q ss_pred HHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 55541123345404887388506899998730456677613899999850232112210123444444687630342566
Q gi|254780450|r 352 DANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDF 431 (803)
Q Consensus 352 ~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHel 431 (803)
.++...+ ....|..+..++|+..++....+|.++..|...|.+++.+|||+||+.|+.|.++. +||++|+|+|||||
T Consensus 218 ~v~~~~~-~~~~e~w~~~~dG~~~~~e~~k~P~~d~~g~~~G~~g~~rDITerk~aeeaLE~As--raKS~FLAnMSHEI 294 (779)
T PRK11091 218 KVFRHNV-SLTYEQWLDYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEKAS--RDKTTFISTISHEL 294 (779)
T ss_pred HHHHCCC-CCEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_conf 9986479-82111346648986678998640135389978878630016017789999999999--99999998726875
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE----EEEEHHHHHHHHHHHHHHHH
Q ss_conf 41589999999999850799847888899999998888764300454212005843----58534678999999998750
Q gi|254780450|r 432 NNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRL----TVLNLTEVIGNLRMMIQKLI 507 (803)
Q Consensus 432 r~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~----~~~~l~~~i~~~~~~~~~~~ 507 (803)
|||||+|+|++++|+. .++++.+++++..|..|+++|+.||||||||||+++++. ++|++.+++.++..++....
T Consensus 295 RTPLNgIlG~seLL~~-t~L~~eQre~l~~I~~S~~~Ll~LINDILD~SKIEaGkl~l~~~~fdl~~ll~~v~~~~~~~A 373 (779)
T PRK11091 295 RTPLNGIVGLSRMLLD-TELTAEQEKYLKTIHVSAITLGNIFNDIIDMDKMDRRKLQLDNQPVDFTDFLADLENLSGLQA 373 (779)
T ss_pred CHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 6539999999999807-999999999999999999999999999999999966996788776759999999999999999
Q ss_pred CCCCCEEEEEECCCCCE-EEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 35681699981489722-69987169999999987422765206788579999985042101224556678897899999
Q gi|254780450|r 508 SEPPQVKLTVDYERDLW-GVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEV 586 (803)
Q Consensus 508 ~~~~~i~~~~~~~~~~~-~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V 586 (803)
+.+++++.++...++| .|.+|+.||+|||.||++| |+|||+.|.|++++.. .+++.++|+|
T Consensus 374 -~~Kgl~l~~~~~~~lP~~v~gD~~RLrQIL~NLlsN---AIKFT~~G~V~l~v~~--------------~~~~~l~f~V 435 (779)
T PRK11091 374 -EQKGLRFDLEPLLPLPHKVITDGTRLRQILWNLISN---AVKFTQQGQVTVRVRY--------------EDGDMLHFEV 435 (779)
T ss_pred -HHCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHH---HHHCCCCCCEEEEEEE--------------CCCCEEEEEE
T ss_conf -974988999978999862863899999999999999---9773899977999998--------------2798899999
Q ss_pred EECCCCCCHHHHHHCCCCCCC-----CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 978866884454202322221-----013577653038899999851675499996188942999994375766443333
Q gi|254780450|r 587 EDTGIGMSPDIMEKIFEPFFT-----TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQESH 661 (803)
Q Consensus 587 ~D~G~GI~~~~~~~iFepF~t-----tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~~~~~~~ 661 (803)
+|||+|||++.+++||+||++ +++++.||||||+|||+||++|||+|+|+|++|+||||++.||...........
T Consensus 436 ~DTGiGI~~e~l~~IF~~F~Q~~~s~~~r~~~GTGLGLaI~k~LvelMGG~I~V~S~~G~GStFt~~Lpl~~~~~~~~~~ 515 (779)
T PRK11091 436 EDSGIGIPEDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAQNMGGDITVTSEEGKGSTFTLTIHAPAVAEEVEDA 515 (779)
T ss_pred EECCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 95799999999998705756066787776778876079999999998499799995599871799999766556677665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 33222235444453334787569997698899999999999889899998998999899986599954899858788988
Q gi|254780450|r 662 YSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMD 741 (803)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~ 741 (803)
..... ....+.+|||||||+.|+.+++.+|+.+||+|..|.||.|||++++.. +||+||||++||+||
T Consensus 516 ~~~~~----------~~~~~lrILvVEDn~iN~~V~~~~L~~lG~~v~~A~nG~eALe~~~~~--~fDLILMDiqMP~MD 583 (779)
T PRK11091 516 FDEDD----------MPLPALNILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFKPG--EYDLVLLDIQLPDMT 583 (779)
T ss_pred CCCCC----------CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCC--CCCEEEEECCCCCCC
T ss_conf 56666----------688888189986889999999999997599999989999999985069--999899828999997
Q ss_pred HHHHHHHHHHHCC---CCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 8999999998689---98299990678589987676057980750797999999999998513
Q gi|254780450|r 742 GPTLLRELRKTYP---SLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 742 G~~~~~~ir~~~~---~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
|+|++++||+..+ .+|||++||++.. ..+.+.++|+.+||+||++..+|.+.|.+++..
T Consensus 584 G~Eatr~IR~~~~~~~~~PIIALTAna~~-d~~~~l~aGMdd~L~KPi~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 584 GLDVARELRERYGREDLPPLVALTANVLK-DKQEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCCH-HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCC
T ss_conf 89999999842576899927988187417-699999769984751889899999999998464
No 3
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=100.00 E-value=0 Score=735.37 Aligned_cols=475 Identities=22% Similarity=0.322 Sum_probs=378.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEE-ECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999999999834675099985-020699831554444454884661798666610111122024666655541
Q gi|254780450|r 278 SGDPSGTIANMRFNRFFNNIPMAIASID-KKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQ 356 (803)
Q Consensus 278 ~~e~~l~~se~rl~~i~e~~p~~I~~~d-~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (803)
+....|.++|+.-+.++.++|.||++++ .||..+..|+-+..++ ..+.++++....... .+
T Consensus 347 ~~a~~l~e~e~fnr~~i~~apvg~~~l~~~dg~~~~~n~~~~~~~--------------~~~~~~~~~~~~~~~----~~ 408 (947)
T PRK10841 347 SNALRLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELAHNYL--------------NMLTHEDRQRLTQII----CG 408 (947)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHH--------------HHCCCCHHHHHHHHH----HC
T ss_conf 778899878887788986177137999706886331038999987--------------623755289999998----61
Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHH-----HHHHHHHHHHCCCHHHH
Q ss_conf 1233454048873885068999987304566776138999998502321122101234-----44444687630342566
Q gi|254780450|r 357 KSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQT-----QKLNAVGTLAGGIAHDF 431 (803)
Q Consensus 357 ~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa-----~~~~a~~~~~a~isHel 431 (803)
+.. ..++ ....++++.+....+..-++. ...++...|||+||++|+.|.++ ++.+||++|+|+|||||
T Consensus 409 ~~~-~~~~--~~~~~~~~l~~~~~~~ry~~~----~v~~c~~~Disar~~~e~~L~~a~~AAE~AN~AKS~FLAnMSHEI 481 (947)
T PRK10841 409 QQV-NFVD--VLTSNNTNLQISFVHSRYRNE----NVAICVLVDVSARVKMEESLQEMAQAAEQASQSKSMFLATVSHEL 481 (947)
T ss_pred CCC-CCEE--EEECCCCEEEEEEEEEEECCC----CEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 378-8348--993598579999865312686----079999985407899999999999999999999989987585643
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE----EEEHHHHHHHHHHHHHHHH
Q ss_conf 415899999999998507998478888999999988887643004542120058435----8534678999999998750
Q gi|254780450|r 432 NNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLT----VLNLTEVIGNLRMMIQKLI 507 (803)
Q Consensus 432 r~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~----~~~l~~~i~~~~~~~~~~~ 507 (803)
|||||+|+|++++|. +..+++.+++++..|.+|++.|+.||||||||||+|+++++ +|++.++++++...+.+..
T Consensus 482 RTPLnGIlG~lELL~-~t~L~~~Qr~~l~tI~~Ss~~LL~lINDILDfSKIEAGkl~Le~~~F~l~~lv~~v~~~~~~~A 560 (947)
T PRK10841 482 RTPLYGIIGNLDLLQ-TKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLV 560 (947)
T ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 612899999999980-7999989999999999999999999999999998804984798525689999999999999999
Q ss_pred CCCCCEEEEEECCCCCE-EEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 35681699981489722-69987169999999987422765206788579999985042101224556678897899999
Q gi|254780450|r 508 SEPPQVKLTVDYERDLW-GVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEV 586 (803)
Q Consensus 508 ~~~~~i~~~~~~~~~~~-~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V 586 (803)
. .+++.+.+..++++| .|.||+.||+|||.||++| |+|||+.|.|.+++.. .+++++|+|
T Consensus 561 ~-~K~L~L~~~idp~vP~~v~GDp~RLrQIL~NLLsN---AIKFT~~G~I~L~V~~---------------~~~~L~fsV 621 (947)
T PRK10841 561 V-KKQLGLYCFIEPDVPVSLNGDPMRLQQVISNLLSN---AIKFTDTGCIILHVRV---------------DGDYLSFRV 621 (947)
T ss_pred H-HCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHH---HEEECCCCEEEEEEEE---------------CCCEEEEEE
T ss_conf 9-73987999979999965860688999999998877---7466799589999998---------------499999999
Q ss_pred EECCCCCCHHHHHHCCCCCCC-----CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 978866884454202322221-----013577653038899999851675499996188942999994375766443333
Q gi|254780450|r 587 EDTGIGMSPDIMEKIFEPFFT-----TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQESH 661 (803)
Q Consensus 587 ~D~G~GI~~~~~~~iFepF~t-----tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~~~~~~~ 661 (803)
+|||+||+++.+++||+||++ +|++| ||||||+|||+||++|||+|+|+|++|+||||+|.||.......+...
T Consensus 622 ~DTGIGIsee~~~~LFepF~QaD~S~tR~yG-GTGLGLAI~krLVeLMGG~I~VeSe~G~GStFtf~LPL~~~~~~~~~~ 700 (947)
T PRK10841 622 RDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQ-GTGLGLAICEKLINMMDGDISVDSEPGMGSQFTVRIPLYGAQYPVKKG 700 (947)
T ss_pred EECCCCCCHHHHHHHHCHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 9828998999999884711157875434579-987419999999997599589991699807999997564334565666
Q ss_pred CCCC----------------------------------------------------------------------------
Q ss_conf 3322----------------------------------------------------------------------------
Q gi|254780450|r 662 YSHD---------------------------------------------------------------------------- 665 (803)
Q Consensus 662 ~~~~---------------------------------------------------------------------------- 665 (803)
....
T Consensus 701 ~~~l~g~~v~l~~~n~~l~~~l~~~L~~~Gi~v~~~~~~~~~~~dvlI~d~~~~~~~~~~~~i~~~~~~i~~p~~~~~~~ 780 (947)
T PRK10841 701 VEGLSGKRCWLAVRNASLEQFLETLLQRSGIHVQRYEGQEPTPEDVLITDDPVQKKWQGRAVITFCRRHIGIPLEKAPGE 780 (947)
T ss_pred CHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCHHHCCCCC
T ss_conf 40104755899807677899999999865953786123456744326632533444312568887654037534305431
Q ss_pred ----------------------------CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHH
Q ss_conf ----------------------------2235444453334787569997698899999999999889899998998999
Q gi|254780450|r 666 ----------------------------IAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDA 717 (803)
Q Consensus 666 ----------------------------~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~ea 717 (803)
....+..........+.+|||||||+.|+.+++.+|+..||+|..|.||.||
T Consensus 781 ~l~~~~~~~~l~~ll~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lrILVVEDNpINq~VL~~~L~~LG~~V~~A~NG~EA 860 (947)
T PRK10841 781 WVHSTATPHELPALLARIYRIELESDDSSNALPATDKAVDDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDA 860 (947)
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 11254556677899998752022344443346775433346789889999078999999999999769999998999999
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 89998659995489985878898889999999986899829999067858998767605798075079799999999999
Q gi|254780450|r 718 LKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHE 797 (803)
Q Consensus 718 l~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~ 797 (803)
|+++++. .||+||||++||+|||++++++||+...++|||++||++..+..+.|.++|+.+||+||++.+.|.+++.+
T Consensus 861 Le~l~~~--~fDLILMDIqMPvMDGyEaTr~IRe~~~~iPIIALTAnA~~edkerCleAGMDdyLsKPV~l~~L~~vL~~ 938 (947)
T PRK10841 861 LNVLSKN--HIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTV 938 (947)
T ss_pred HHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf 9997569--98989970888998099999999808984949999389998999999987999999798979999999999
Q ss_pred HHC
Q ss_conf 851
Q gi|254780450|r 798 LLQ 800 (803)
Q Consensus 798 ~L~ 800 (803)
+..
T Consensus 939 Y~~ 941 (947)
T PRK10841 939 YAE 941 (947)
T ss_pred HHH
T ss_conf 987
No 4
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=100.00 E-value=0 Score=736.50 Aligned_cols=501 Identities=19% Similarity=0.231 Sum_probs=377.4
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCC-HHHHCCCCHHHHCCCCCCCCHHHH
Q ss_conf 8607899999999999999999983467509998502069983155444445488-466179866661011112202466
Q gi|254780450|r 271 VSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCT-EGDGTSNDIFSIVHKNEKRKIIAA 349 (803)
Q Consensus 271 ~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~-~~~~~g~~~~~~~~~~~~~~~~~~ 349 (803)
..+..|+++|++|+++....+.+++++|.+|++.|.+|+++.||.+|.+.|+... .....+..-.+....+......+.
T Consensus 559 r~ir~R~~ae~~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1197)
T PRK09959 559 RSVRRRKVIQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENSESPFKDVFSNTHEV 638 (1197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999889999999836998769982556122411888987523144421356532222156777777899
Q ss_pred HHHHHHHCCCCCCCCEEEECC-CCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHH-----HHHHHHHH
Q ss_conf 665554112334540488738-850689999873045667761389999985023211221012344-----44446876
Q gi|254780450|r 350 LYDANDQKSDISPIDSPHPQD-ENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQ-----KLNAVGTL 423 (803)
Q Consensus 350 ~~~~~~~~~~~~~~e~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~-----~~~a~~~~ 423 (803)
........ ...........+ ..+.+..|.... ....+...+.++.++||||||++|++|++++ +.+||++|
T Consensus 639 ~~~~~~~~-~~~~~~~~~~~g~~~~~i~~w~~~~--~~~~~~~~~~i~gw~DITerk~~e~~L~~Ak~~Ae~An~AKS~F 715 (1197)
T PRK09959 639 TAETKENR-TIYTQVFEIDNGIEKRCINHWHTLC--NLPASDHAVYICGWQDITETRDLIHALEVERNKAINATVAKSQF 715 (1197)
T ss_pred HHHHHHCC-CCCCEEEECCCCCCCEEEEEEEEEE--CCCCCCCEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87531012-1000145305775423677531000--37644440101154641289999999999999999998888888
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE----EEEEHHHHHHH
Q ss_conf 303425664158999999999985079984788-8899999998888764300454212005843----58534678999
Q gi|254780450|r 424 AGGIAHDFNNVLTAILLSSDHLLLQSRSSDASF-ADLMEIKHNANRAAILVRQLLAFSRKQTMRL----TVLNLTEVIGN 498 (803)
Q Consensus 424 ~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~-~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~----~~~~l~~~i~~ 498 (803)
+|+||||||||||+|+|++++|... ...++++ +++..+..|++.++.||||||||||+|+|+. +++++.+++++
T Consensus 716 LA~MSHEIRTPLn~IiG~~eLL~~~-~l~~~q~~~~l~~~~~Sa~~LL~LInDILD~SKIEaG~l~l~~~~~~l~~li~~ 794 (1197)
T PRK09959 716 LATMSHEIRTPISSIMGFLELLSGS-GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQN 794 (1197)
T ss_pred HHHCCHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHH
T ss_conf 8747353165689999999998468-999899999999999999999998888899989853886214520179999999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCC-CCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 99999875035681699981489-72269987169999999987422765206788579999985042101224556678
Q gi|254780450|r 499 LRMMIQKLISEPPQVKLTVDYER-DLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLP 577 (803)
Q Consensus 499 ~~~~~~~~~~~~~~i~~~~~~~~-~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~ 577 (803)
+..++.... +.+++.+.++... ....+.+|+.||+|||.||++| |+|||+.|.|.|++......+
T Consensus 795 v~~~~~~~A-~~K~l~l~~~~~~p~~~~v~~D~~Rl~QIL~NLlsN---AIKFT~~G~V~i~~~~~~~~~---------- 860 (1197)
T PRK09959 795 TCHSFGAIA-ASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSN---ALKFTTEGAVKITTSLGHIDD---------- 860 (1197)
T ss_pred HHHHHHHHH-HHCCCEEEEECCCCCCCEECCCHHHHHHHHHHHHHH---HCCCCCCCEEEEEEEEEECCC----------
T ss_conf 999999999-967968999558987513526788999999999875---374687978999999865179----------
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHCCCCCCC---CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 897899999978866884454202322221---01357765303889999985167549999618894299999437576
Q gi|254780450|r 578 TKDMVLVEVEDTGIGMSPDIMEKIFEPFFT---TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQ 654 (803)
Q Consensus 578 ~~~~v~i~V~D~G~GI~~~~~~~iFepF~t---tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~ 654 (803)
....++|+|+|||+||+++.+++||+||++ ++++| ||||||+|||+||++|||+|+|+|++|+||||+|.||....
T Consensus 861 ~~~~l~~~V~DTGiGI~~~~~~~iF~pF~Q~s~~r~~~-GTGLGLaI~k~LvelMgG~I~v~S~~G~GS~F~~~lpl~~~ 939 (1197)
T PRK09959 861 NHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQT-GSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEIS 939 (1197)
T ss_pred CEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCC
T ss_conf 80699999997787889889975367862477887889-84835999999999879928999359994499999975645
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 64433333322223544445333478756999769889999999999988989999899899989998659995489985
Q gi|254780450|r 655 EHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISD 734 (803)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D 734 (803)
............ |..+ ..+.+|||||||+.|+.+++.+|+.+||+|..|.||.|||++++.. +||+||||
T Consensus 940 ~~~~~~~~~~~~-------p~~~-~~~l~ILvVeDn~~Nr~ll~~~L~~lG~~v~~a~nG~eAl~~~~~~--~fDlILmD 1009 (1197)
T PRK09959 940 QQVATVEAKAEQ-------PITL-PEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQ--HYDLLITD 1009 (1197)
T ss_pred CCCCCCCCCCCC-------CCCC-CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEC
T ss_conf 555566665557-------7767-7898799979989999999999998399999989999999997669--99999987
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 878898889999999986899829999067858998767605798075079799999999999851
Q gi|254780450|r 735 VVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 735 ~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
++||+|||+|++|+||+..+++|||++||++....++.|.++|+.+||.||+++++|.+.+.++..
T Consensus 1010 i~MP~MDG~e~tr~IR~~~~~~PIialTA~a~~~~~~~cl~aGMdd~L~KPi~l~~L~~~L~~~~~ 1075 (1197)
T PRK09959 1010 VNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 978999899999999646986948999799999999999976998345188989999999985311
No 5
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=100.00 E-value=0 Score=685.55 Aligned_cols=387 Identities=32% Similarity=0.484 Sum_probs=343.9
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85023211221012344444468763034256641589999999999850799847888899999998888764300454
Q gi|254780450|r 399 VEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLA 478 (803)
Q Consensus 399 ~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd 478 (803)
+.-|||+++|.+|+|+|||+++|+|++||+|||||||++|+||+++++...+..++.++++..|.++++|+.+||++||+
T Consensus 432 r~etER~~LE~qL~qAQKmEAiG~LAgGIAHDFNNiLt~I~G~aeLa~~~l~~~~~~~~~L~~I~~aa~Ra~~Lv~qLL~ 511 (831)
T PRK13837 432 RLETERDALERRLEHARRLEAVGTLASGIAHNFNNILGAILGYAEMALNKLRRHSRARRHIDEIISSGDRARLIIDQILT 511 (831)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87999999999999999999999999899998700899999999998620699847789999999999999999999999
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 21200584358534678999999998750356816999814897226998716999999998742276520678857999
Q gi|254780450|r 479 FSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTV 558 (803)
Q Consensus 479 ~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i 558 (803)
|||.+..+++++|+++++.++..+++..+++ ++++.++.++++|.|.+|+.+|+|||+||+.||+||+ +++|.|+|
T Consensus 512 FSR~~~~~~~~vdl~~lv~e~~~llr~~l~~--~I~l~~~~~~~~~~V~aD~~QL~QVllNL~~NA~dAM--~~gG~l~I 587 (831)
T PRK13837 512 FGRKGERRTKPFSLSELVTEIAPLLRVSLPP--TVELDFDFDQEPAVVEGNPAQLQQVILNLCKNAAQAM--DENGRVDI 587 (831)
T ss_pred HHCCCCCCCCEECHHHHHHHHHHHHHHHCCC--CEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHC--CCCCEEEE
T ss_conf 8589999771774999999999999987589--8699997189885388879999999999999999976--79986999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 99850421012245566788978999999788668844542023222210135776530388999998516754999961
Q gi|254780450|r 559 RTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESE 638 (803)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~ 638 (803)
++.+..............++|+|++|+|+|||+|||++.++||||||||||. +|||||||+|++||+.|||.|.|+|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~G~yv~L~VsDtG~GI~~e~l~RIFEPFFTTK~--~GTGLGLAvV~gIV~~hgG~I~V~S~ 665 (831)
T PRK13837 588 RLSRVDLRKPKVLAHGTAPPGRYVLLRVSDTGRGIDEAVLPHIFEPFFTTRA--RGTGLGLATVHGIVSAHAGYIDVQST 665 (831)
T ss_pred EEEEEECCCHHHHCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC--CCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 9855533632321157789989899999867999898999660489867889--98874699999999986986999726
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 88942999994375766443333332222354444533347875699976988999999999998898999989989998
Q gi|254780450|r 639 VGKGTIFRIFLPRYVQEHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDAL 718 (803)
Q Consensus 639 ~g~Gt~F~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal 718 (803)
||+||||+|+||......... ... .+. ....|.+.+|||||||+.++.+.+.+|+.+||+|.++.||.+||
T Consensus 666 pG~GTtF~v~LP~~~~~~~~~-----~~~-~~~---~~~~g~ge~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al 736 (831)
T PRK13837 666 VGRGTRFDVYLPPSSKVPVAP-----DAF-GPL---PAPRGNGETVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAI 736 (831)
T ss_pred CCCCEEEEEEEECCCCCCCCC-----CCC-CCC---CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf 999718999831798877787-----767-777---88899997799985988999999999996799688868999999
Q ss_pred HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 99986599954899858788988899999999868998299990678589987676057980750797999999999998
Q gi|254780450|r 719 KVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHEL 798 (803)
Q Consensus 719 ~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~ 798 (803)
+++++++..||||++| +||+|+|.++++.++...|++||| +|||+.+.........+..+||+|||+..+|..+|++.
T Consensus 737 ~~~~~~~~~~DLvltD-~~p~~~g~~~~~~l~~~~p~lpVi-lsg~~~~~~~~~~~~~~~~~fL~KPfs~~~LA~avR~a 814 (831)
T PRK13837 737 AWISKDGKRFDLVLVD-QPSLGDSQLAIAALHAAAPTLPII-LAGSSLKMAAREALATAIAEILPKPISSRTLAYALRTA 814 (831)
T ss_pred HHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCCEEE-EECCCCHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 9998389985399988-999998799999998618997499-97688144331102226670650999999999999999
Q ss_pred HCCC
Q ss_conf 5137
Q gi|254780450|r 799 LQSD 802 (803)
Q Consensus 799 L~~~ 802 (803)
|+..
T Consensus 815 L~~~ 818 (831)
T PRK13837 815 LATA 818 (831)
T ss_pred HHCC
T ss_conf 8488
No 6
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=100.00 E-value=0 Score=660.19 Aligned_cols=355 Identities=24% Similarity=0.351 Sum_probs=304.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CE----EE
Q ss_conf 4444687630342566415899999999998507998478888999999988887643004542120058--43----58
Q gi|254780450|r 416 KLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM--RL----TV 489 (803)
Q Consensus 416 ~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~--~~----~~ 489 (803)
+.+||++|+|+||||||||||+|+|++++|. +.+..+.+++++..|..++++++.+|||||||||+|+| +. ++
T Consensus 440 AnrAKS~FLA~MSHEIRTPLNgIlG~~eLL~-~~~l~~~qr~~l~~I~~s~~~LL~lInDILD~SkiEaG~~~l~l~~~p 518 (912)
T PRK11466 440 ASQAKSAFLAAMSHEIRTPLYGILGTAQLLA-DNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEP 518 (912)
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 9999999998713976775999999999984-799998999999999999999999999999999981899813886115
Q ss_pred EEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE-EEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 53467899999999875035681699981489722-69987169999999987422765206788579999985042101
Q gi|254780450|r 490 LNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLW-GVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEI 568 (803)
Q Consensus 490 ~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~ 568 (803)
|++.+++.++..++.+.. +.+++.+.++.++++| .+.+|+.||+|||.||++| |+|||+.|.|+++++.
T Consensus 519 f~l~~ll~~v~~~~~~~a-~~k~l~l~~~~~~~lp~~v~gD~~RLrQIL~NLlsN---AiKFT~~G~V~l~~~~------ 588 (912)
T PRK11466 519 FEPRPLLESTLQLMSGRV-KGRPIRLATDIADDVPSALMGDPRRIRQVITNLLSN---ALRFTDEGSIVLRSRT------ 588 (912)
T ss_pred CCHHHHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHH---HCCCCCCCEEEEEEEE------
T ss_conf 689999999999999999-837978999727999860863588999999999998---7061899679999998------
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf 22455667889789999997886688445420232222101357765303889999985167549999618894299999
Q gi|254780450|r 569 HTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF 648 (803)
Q Consensus 569 ~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~ 648 (803)
.++.+.|+|+|||+|||++.+++||+||++..+...||||||+|||+||++|||+|+|+|++|+||||+|.
T Consensus 589 ---------~~~~l~~~V~DTGiGI~~e~~~~IF~~F~Q~~~~~gGtGLGLaI~k~LvelMGG~I~V~S~~G~GS~F~~~ 659 (912)
T PRK11466 589 ---------DGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLR 659 (912)
T ss_pred ---------CCCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEE
T ss_conf ---------69789999850899999999998844761588998992668999999999879979997169987289999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCC
Q ss_conf 43757664433333322223544445333478756999769889999999999988989999899899989998659995
Q gi|254780450|r 649 LPRYVQEHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRV 728 (803)
Q Consensus 649 lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~ 728 (803)
||...+..+.... ...+.. ..+.+|||||||+.|+.++..+|+.+||+|..|.||.||++.+++. .+|
T Consensus 660 LPl~~~~~~~~~~---------~~~~~~--~~~lrVLvVEDn~~N~~v~~~~L~~lG~~v~~A~nG~eAle~l~~~-~~f 727 (912)
T PRK11466 660 LPLRHATAPVPKT---------VNQAVR--LDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNS-EPF 727 (912)
T ss_pred EECCCCCCCCCCC---------CCCCCC--CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCC
T ss_conf 9777888787643---------346657--7888699994878899999999998699899989999999999718-998
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 48998587889888999999998689982999906785899876760579807507979999999999985137
Q gi|254780450|r 729 DIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 729 dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
|+||||++||+|||++++++||+..|.+|||++||++.+...+.+.++|+.+||+||++.++|.+.|.+++...
T Consensus 728 DlVLmDi~MP~mDG~eatr~iR~~~~~~pIIAlTA~a~~ed~~~~l~aGmd~~L~KPv~~~~L~~~l~~~l~~~ 801 (912)
T PRK11466 728 AAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (912)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCC
T ss_conf 58987699999989999999986199997899779878899999997699877549899999999999984667
No 7
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=100.00 E-value=0 Score=654.31 Aligned_cols=369 Identities=22% Similarity=0.316 Sum_probs=304.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE----EE
Q ss_conf 44444687630342566415899999999998507998478888999999988887643004542120058435----85
Q gi|254780450|r 415 QKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLT----VL 490 (803)
Q Consensus 415 ~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~----~~ 490 (803)
++.++|++|+|+||||||||||+|+||+++|+. ..+.+.++.++..|..++++++.||||||||||+++++++ +|
T Consensus 288 ~A~r~Ks~FLAnmSHEiRTPLn~IiG~~~ll~~-~~l~~~q~~~l~~i~~s~~~Ll~lIndiLD~SkiEag~l~le~~~f 366 (920)
T PRK11107 288 EAARIKSEFLANMSHELRTPLNGVIGFTRQTLK-TPLTPTQRDYLQTIERSANNLLAIINDILDFSKLEAGKLILENIPF 366 (920)
T ss_pred HHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 999999999996648654219999999999856-9999999999999999999999999999999998459836740167
Q ss_pred EHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE-EEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
Q ss_conf 3467899999999875035681699981489722-699871699999999874227652067885799999850421012
Q gi|254780450|r 491 NLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLW-GVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIH 569 (803)
Q Consensus 491 ~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~ 569 (803)
++.++++++..++.+.. +.+++++.++.++++| .|.+|+.||+|||.||++| |+|||+.|.|.|++......+
T Consensus 367 ~l~~~~~~v~~~~~~~a-~~k~l~l~~~~~~~~p~~v~gD~~Rl~QIl~NLl~N---AiKfT~~G~I~v~v~~~~~~~-- 440 (920)
T PRK11107 367 SLRETLDEVVTLLAHSA-HEKGLELTLNIDPDVPDNVIGDPLRLQQIITNLVGN---AIKFTESGNIDILVELRALSD-- 440 (920)
T ss_pred CHHHHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHH---HHHCCCCCCEEEEEEEEECCC--
T ss_conf 89999999999999999-973987999978999730653899999999999999---997188993799999996479--
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCC-----CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEE
Q ss_conf 2455667889789999997886688445420232222-----10135776530388999998516754999961889429
Q gi|254780450|r 570 TFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF-----TTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTI 644 (803)
Q Consensus 570 ~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~-----ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~ 644 (803)
+..+++|+|+|||+|||++.+++||+||+ ++|++| ||||||+|||+||++|||+|+|+|++|+|||
T Consensus 441 --------~~~~l~~~V~DTGiGI~~~~~~~iF~~F~q~d~s~~r~~g-GtGLGLaI~k~Lv~~mgG~I~v~S~~g~GS~ 511 (920)
T PRK11107 441 --------EKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHG-GTGLGLVITQKLVNEMGGDISFHSQPNRGST 511 (920)
T ss_pred --------CEEEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf --------8489999999970586999999785420156765445679-8774299999999980991799954899748
Q ss_pred EEEEECCCCCCCCCCCCCCCC-----------------------------------------------------------
Q ss_conf 999943757664433333322-----------------------------------------------------------
Q gi|254780450|r 645 FRIFLPRYVQEHTQESHYSHD----------------------------------------------------------- 665 (803)
Q Consensus 645 F~i~lP~~~~~~~~~~~~~~~----------------------------------------------------------- 665 (803)
|+|++|............+..
T Consensus 512 F~Ftlpl~~~~~~~~~~~~~~~L~g~~vlvve~~~~~~~~l~~~L~~~g~~v~~~~~~~~l~~~~~D~~li~~~~~~~~~ 591 (920)
T PRK11107 512 FWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSLAAQATLDLLSETPLEVTYSPTLSQLPEAHYDYLLLGCPVTFREP 591 (920)
T ss_pred EEEEEECCCCCCCCCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHHHCCCCCEEEECCCCCCCCH
T ss_conf 99999804766544456662342587699976977899999999997496457517887751368887996166666540
Q ss_pred -------------------------------------------CC------------------CCCCCCCCCCCCCCCEE
Q ss_conf -------------------------------------------22------------------35444453334787569
Q gi|254780450|r 666 -------------------------------------------IA------------------IIPQEEPADLTGNSAIV 684 (803)
Q Consensus 666 -------------------------------------------~~------------------~~~~~~~~~~~~~~~~i 684 (803)
.| ..+...+......+.+|
T Consensus 592 ~~~~~~~l~~~~~~~~~~il~~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~lrV 671 (920)
T PRK11107 592 LTMLHERLAKAKSMTDFLILALPCHEQVNAEQLKQPGADACLSKPLSETRLLPALLTEPCHHKQPPLLPPTDQSKLPLTV 671 (920)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 66789998630035784699715643455788764253021127776889999872233455555666766322467749
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEEEEE
Q ss_conf 99769889999999999988989999899899989998659995489985878898889999999986--8998299990
Q gi|254780450|r 685 LLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT--YPSLKFIFIS 762 (803)
Q Consensus 685 LvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~--~~~~~ii~~t 762 (803)
|+||||+.|+.++..+|+.+||+|..|.||.||+++++++ +||+||||++||+|||++++++||+. ..++|||++|
T Consensus 672 LvVEDN~iN~~vi~~lL~~lG~~v~~A~nG~eAle~~~~~--~fDLILMDiqMP~MDG~eATr~IR~~~~~~~~PIIAlT 749 (920)
T PRK11107 672 MAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVELAKQR--PFDLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIAVT 749 (920)
T ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 9984889999999999998498899989999999997479--99789988999999899999999818678989599997
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 678589987676057980750797999999999998513
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
|+++...++.|.++|+.+||+||++..+|.+.|.+++..
T Consensus 750 A~a~~~dre~cl~aGMddyLtKPI~~~~L~~~L~~~~~~ 788 (920)
T PRK11107 750 AHAMAGERERLLGAGMDDYLAKPIDEAALKQVLLRWKPG 788 (920)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCCC
T ss_conf 998989999999779993872879999999999986788
No 8
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=100.00 E-value=0 Score=640.09 Aligned_cols=365 Identities=25% Similarity=0.383 Sum_probs=310.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--C----EEE
Q ss_conf 4444687630342566415899999999998507998478888999999988887643004542120058--4----358
Q gi|254780450|r 416 KLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM--R----LTV 489 (803)
Q Consensus 416 ~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~--~----~~~ 489 (803)
+.+|||.|+|.||||||||||+|+|.++|| .+.++...+..|+..|.+|++.|++|.||||||||+|+| . +.+
T Consensus 501 AnrAKS~FLAtMSHEIRTPlNG~LGT~~LL-~d~~L~~~Q~~yl~~In~SGe~LL~iLNDILDYSkIEaGGthl~i~~~~ 579 (1052)
T TIGR02956 501 ANRAKSAFLATMSHEIRTPLNGILGTLELL-GDTGLTSQQQQYLQVINRSGESLLDILNDILDYSKIEAGGTHLSISPRP 579 (1052)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 748876887413511320113689999750-5899888899999999862278999984675467761087465345567
Q ss_pred EEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE-EEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 53467899999999875035681699981489722-69987169999999987422765206788579999985042101
Q gi|254780450|r 490 LNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLW-GVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEI 568 (803)
Q Consensus 490 ~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~ 568 (803)
||+..++.|+..++..- ...+.|.+.++.+.++| +..||+.||+|||.||++| |+|||+.|+|+|++...+....
T Consensus 580 fd~~~L~~dv~~Lm~sR-A~~Kg~~L~~~~~~~~~~~~~gD~~riRQvL~NLvgN---aIKFT~~Gsv~l~~~l~~~~~~ 655 (1052)
T TIGR02956 580 FDLNKLLEDVHHLMESR-AQEKGIQLILNIDEQLPNWWQGDLRRIRQVLINLVGN---AIKFTDRGSVVLRVSLNDDSSS 655 (1052)
T ss_pred CCHHHHHHHHHHHHHHH-HHCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHHHHC---CCEECCCCEEEEEEEECCCCCC
T ss_conf 78888999999999987-7403725674276542788753661344767654413---2004345269999885588898
Q ss_pred CCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC---CCCCCCCCHHHHHHHHHHCCCCE---EEEEECCCCC
Q ss_conf 22455667889789999997886688445420232222101---35776530388999998516754---9999618894
Q gi|254780450|r 569 HTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK---KVGEGTGLGLSVVYGIIRQSGGY---ILPESEVGKG 642 (803)
Q Consensus 569 ~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk---~~g~GtGLGL~i~~~iv~~~gG~---i~v~S~~g~G 642 (803)
+..-+.|+|.||||||+++.++.||+||.+.. +.-.|||||||||++||+.|||+ |+|+|++|+|
T Consensus 656 ---------gdsel~F~V~DtG~GIae~~~~~lF~aF~Qa~eg~~~~gGTGLGLAIs~~Lv~AM~G~GrGl~v~S~~~~G 726 (1052)
T TIGR02956 656 ---------GDSELLFEVEDTGVGIAEEEQATLFDAFTQADEGRRKSGGTGLGLAISRRLVEAMDGEGRGLGVESELGQG 726 (1052)
T ss_pred ---------CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf ---------66347888862477998799985433101210137313776506899999999708887650166645875
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 29999943757664433333322223544445333478756999769889999999999988989999899899989998
Q gi|254780450|r 643 TIFRIFLPRYVQEHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVME 722 (803)
Q Consensus 643 t~F~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~ 722 (803)
|||++.||.....+.............|+.. + .+-.+||+||||+.|.++...+|+++||.|..|.||.+|++++.
T Consensus 727 ScF~F~lpl~~~~~~~~~~~d~~~~~~~~~a---l-sqyy~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~ 802 (1052)
T TIGR02956 727 SCFWFTLPLARGKPAEKSATDRTVIDVPPQA---L-SQYYRVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFH 802 (1052)
T ss_pred CEEEEECCCCCCCHHCCHHHCCCHHHCCCHH---H-HHHCEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
T ss_conf 0221242313375000303335012146234---5-30001324644747799999998427944720854999999985
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC--------CCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf 65999548998587889888999999998689--------9829999067858998767605798075079799999999
Q gi|254780450|r 723 KLQGRVDIVISDVVMPEMDGPTLLRELRKTYP--------SLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATS 794 (803)
Q Consensus 723 ~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~--------~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~ 794 (803)
+ ..+||++|+||++|+.||.+|.+++|...+ .+|.|++|||--++.-+.+.++|+++||+||+..++|...
T Consensus 803 ~-~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~p~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~ 881 (1052)
T TIGR02956 803 Q-DHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDEPVKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAM 881 (1052)
T ss_pred C-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 4-887675455157889865678999999997320444567772221133447769999753026634799877889999
Q ss_pred HHHHH
Q ss_conf 99985
Q gi|254780450|r 795 VHELL 799 (803)
Q Consensus 795 i~~~L 799 (803)
|..+|
T Consensus 882 l~~~l 886 (1052)
T TIGR02956 882 LAKIL 886 (1052)
T ss_pred HHHHH
T ss_conf 99987
No 9
>PRK13560 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=492.61 Aligned_cols=586 Identities=15% Similarity=0.159 Sum_probs=435.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHH-HH
Q ss_conf 99999986211899999985249809999599938981066886709995673156110002787616789999999-83
Q gi|254780450|r 15 IGSIEMTIKPKIPLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINS-LR 93 (803)
Q Consensus 15 ~g~l~~~lr~~~~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 93 (803)
-..+|.+++++..+++.++|++|+++|..|.+|++++||.+|++++|+++++++|.....+. +.+..+...+.... +.
T Consensus 192 RKraE~rl~~ql~flq~LlDnipdpvF~kD~~G~ylgcN~afe~~~G~~re~i~G~ti~Dl~-p~e~ad~y~~~d~~~l~ 270 (807)
T PRK13560 192 RKRAEERIDEALHFLQQLLDNIADPAFWKDEDAKVFGCNDAACLACGFRREEIIGMSIHDFA-PAQPADDYQEADAAKFD 270 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECHHHHHHCCCCHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHC
T ss_conf 77899999999999999985488746997799518962099998809999995686101278-15568999875088641
Q ss_pred CCCCCCEEEEEEECCEEECCCCCEEEEEEEEEEEEECCCCCE-EEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 243232038986010000489867999999999982378806-9999999783388999999999999999998525961
Q gi|254780450|r 94 LKSEGSEEFRLMQSLNNYSQNSEPHWYRLKARVLPISLHKEK-LLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVG 172 (803)
Q Consensus 94 ~~~~~~~e~~~~~~~~~~~~~g~~~w~~i~~~~~~~~~~~~~-~~~~~~i~DIT~~k~~ee~l~~~~~~~~~~le~a~~g 172 (803)
.+... ..+......||..+|+.+..+..+..+..+. ...+.+++|||+||++|+++++++++++.++|++|.|
T Consensus 271 ~~~~~------~~E~~v~~~DG~~~~~~v~~nka~~~d~~g~~~GlvGv~~DITeRK~aEe~LresEer~R~i~E~a~~g 344 (807)
T PRK13560 271 ADGSQ------IIEAEFQNKDGRTRPVDVIFNHAEFDDKENHCAGLVGAITDISGRRAAERELLEKEDMLRAIIEAAPIA 344 (807)
T ss_pred CCCCE------EEEEEEECCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88755------755203779985757999986223338788665688887615677889999999899999998736653
Q ss_pred EEEECCCCCEEEE-HHHHHHHCCCCHHHHCCCCCC--------------HHHHCCCHHHHHHHHHH---HHHCCCCEEE-
Q ss_conf 9999299968976-467986429996780456321--------------88808820489999998---6200267148-
Q gi|254780450|r 173 FMSADHQGKILYI-NATLAEWIGIDLTTFTSKSIS--------------IGDITAGEGLALIQAIR---TEPSHQKITT- 233 (803)
Q Consensus 173 i~~~D~~g~i~~~-N~~~~~llG~~~~e~~~~~~~--------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~- 233 (803)
+|.+|++|+++++ |++.++|+||+.+|+.+..++ +.+ .+|++.++....+ .....++...
T Consensus 345 I~~~D~~g~i~~~~n~aae~m~G~s~eE~lg~~lw~~~pe~~~e~~~~~~~~-~~pdgr~~~~~~c~~a~~~r~g~~~~g 423 (807)
T PRK13560 345 AIGLDADGNICFVNNNAAERMLGWSAAEVMGKPLPGMDPELNEEFWCGDFQE-WYPDGRPMAFDACPMAKTIKGGKIFDG 423 (807)
T ss_pred EEEECCCCCEEEECCHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHCCCCHHH-HCCCCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 4786267615761261678762687688607743356834413331340655-166656343101236677613787788
Q ss_pred EEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE-CEEEEE
Q ss_conf 8899998048979999995567653888554799999860789999999999999999998346750999850-206998
Q gi|254780450|r 234 LDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDK-KGRILR 312 (803)
Q Consensus 234 ~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~-~g~i~~ 312 (803)
.|..+.+. +|..+|+..+..++.+.+|...+.++++.|||+||++|++|++++ .+++++|..++.++. .|-.++
T Consensus 424 ~E~~~~Rk-DGt~~~~~~~~~pL~D~dG~~~gal~i~~DITERKqAEeaLr~sn----~iLEnSp~il~~~~~~~gw~ve 498 (807)
T PRK13560 424 QEVLIERE-DDGPADCSAYAEPLHDADGNIIGAIALLVDITERKQVEEQLLLAN----LIVENSPLVLFRWKAEEGWPVE 498 (807)
T ss_pred CEEEEEEC-CCCEEEEEECCEEEECCCCCEEEEEEHHHCCHHHHHHHHHHHHHH----HHHHCCCCEEEEEECCCCCCEE
T ss_conf 63799906-996577886130225678885331100112427788999999988----8875297404787515786237
Q ss_pred ECCCCCCCCCCCCHHHHCC--CCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCC
Q ss_conf 3155444445488466179--86666101111220246666555411233454048873885068999987304566776
Q gi|254780450|r 313 TNAHFLKLFPNCTEGDGTS--NDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEAP 390 (803)
Q Consensus 313 ~N~a~~~l~~g~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~ 390 (803)
+|.....+| ||++++.++ ..+..++||+|+..+...+..........+..+++...++|.+.|+.....+.++..|.
T Consensus 499 ~vs~~v~~f-GYt~eE~isg~~~~~~lvhPeDr~~v~~~l~~~~~~G~~~f~~eyRi~~kdGsvrWI~~~~~~irDe~G~ 577 (807)
T PRK13560 499 LVSKNITQF-GYEPDEFISGKRMFAAIIHPADLEQVAAEVAEFAAQGVDRFEQEYRILGKGGAVCWIDDQSAAERDEEGQ 577 (807)
T ss_pred EECCHHHHH-CCCHHHHCCCCEEHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCC
T ss_conf 523214550-8887884242310120579788888999999874157552201688876999689997013561178887
Q ss_pred CEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-
Q ss_conf 1389999985023211221012344444468763034256641589999999999850799847888899999998888-
Q gi|254780450|r 391 EEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRA- 469 (803)
Q Consensus 391 ~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~- 469 (803)
+.+..+++.||||||++|++++.+ +..|.-|+..|+|.++|+|+.|.+.+.+-.. ...++.... ...++.+|.
T Consensus 578 V~~~~giv~DIT~~k~aee~l~as--L~EKE~LLkEIHHRVKNNLQiIsSLL~LQar--~~~d~ear~--aL~esq~RI~ 651 (807)
T PRK13560 578 ISHFEGIVIDISERKHAEEKIKAA--LTEKEVLLKEIHHRVKNNLQIISSLLDLQAE--KLHDEEAKC--AFAESQDRIC 651 (807)
T ss_pred EEEEEEEEECCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHH--HHHHHHHHHH
T ss_conf 544444674352888899999999--9988999998776752039999999998876--559999999--9999999999
Q ss_pred -HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCEEEEEC-HHHHHHHHHHHHHHHH-
Q ss_conf -76430045421200584358534678999999998750-3568169998148972269987-1699999999874227-
Q gi|254780450|r 470 -AILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLI-SEPPQVKLTVDYERDLWGVKTD-LSQFEQVLVNLCVNAH- 545 (803)
Q Consensus 470 -~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~v~~D-~~~l~qvl~NLl~NA~- 545 (803)
..+|.+.|--| .....+++.+++.++...+.... .....+.+.++... ..+..| +..|..|+.+|++||.
T Consensus 652 SmAlVHe~Ly~S----~dl~~Id~~~yi~~L~~~L~~s~~~~~~~I~l~vd~d~--~~L~~d~AiPLgLIlnELVtNAlK 725 (807)
T PRK13560 652 AMALAHEKLYQS----EDLADIDFLDYIESLTAHLKNSFAIDFGRIDCKIDADD--GCLDIDKAIPCGLIISELLSNALK 725 (807)
T ss_pred HHHHHHHHHHCC----CCCCEECHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC--CEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998569----99765729999999999999973789863899997367--056588876799999999999898
Q ss_pred HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 65206788579999985042101224556678897899999978866884454202322221013577653038899999
Q gi|254780450|r 546 HAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGI 625 (803)
Q Consensus 546 ~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~i 625 (803)
+|.+-...|.|+|+.+.. ....+.++|+|+|+|||+. |++ .++.+|||.||+.|
T Consensus 726 HAF~~~~~G~I~Isl~~~--------------~~~~v~L~V~DnG~GlP~~-----fd~-------~~s~sLGL~LV~~L 779 (807)
T PRK13560 726 HAFPDGAAGNIKVEIREQ--------------GDGMVNLCVADDGIGLPAG-----FDF-------RAAETLGLQLVCAL 779 (807)
T ss_pred HCCCCCCCCEEEEEEEEC--------------CCCEEEEEEEECCCCCCCC-----CCC-------CCCCCCHHHHHHHH
T ss_conf 608999982799999986--------------7998999998798158999-----897-------88999769999999
Q ss_pred HHCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 85167549999618894299999437576
Q gi|254780450|r 626 IRQSGGYILPESEVGKGTIFRIFLPRYVQ 654 (803)
Q Consensus 626 v~~~gG~i~v~S~~g~Gt~F~i~lP~~~~ 654 (803)
|++.+|+|.++|. .||+|+|.+|..+.
T Consensus 780 v~QL~G~l~i~s~--~Gt~f~I~FPl~p~ 806 (807)
T PRK13560 780 VKQLDGEIALDSR--GGARFNIRFPMSPA 806 (807)
T ss_pred HHHCCCEEEEECC--CCEEEEEEEECCCC
T ss_conf 9974989999859--98699999718999
No 10
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=100.00 E-value=0 Score=504.24 Aligned_cols=354 Identities=24% Similarity=0.364 Sum_probs=296.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999999999834675099985020699831554444454884661798666610111122024666655541
Q gi|254780450|r 277 DSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQ 356 (803)
Q Consensus 277 k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (803)
......|++.....+.++++.++||..+|.+|+++.+|+++.++| |+...++.|+++.+++.+.+ +...+...+..
T Consensus 250 N~ma~~L~~~~~~~e~IL~sm~dGVIaiD~~G~I~~~N~~A~~ll-g~~~~e~ig~~~~~l~~~~~---~~~~~~~~l~~ 325 (607)
T PRK11360 250 NNLAQALREARTLNELIIENAADGIIAIDRQGDITTMNPAAEVIT-GYQRHELVGQPYSMLFDNTQ---FYSPVLDTLEH 325 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEECHHHHHHH-CCCHHHHCCCCHHHHCCCHH---HHHHHHHHHHC
T ss_conf 999999999999899998610466999979994999838999985-87978985967999579576---77999999853
Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 12334540488738850689999873045667761389999985023211221012344444468763034256641589
Q gi|254780450|r 357 KSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLT 436 (803)
Q Consensus 357 ~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~ 436 (803)
+......+..+...++ ...+.++..+..+..+...+.+.++.||||+|++|++++|++|+.++|+|+|++||||||||+
T Consensus 326 ~~~~~~~~~~~~~~~~-~~~l~~~~s~~~~~~g~~~G~v~~~~DiTe~~~le~~l~~~erlaalGe~~A~vaHElRnPLt 404 (607)
T PRK11360 326 GTEHVALEISFPGRDR-TIELSVTTSRLHDTHGEMIGAVVIFSDLTARKRLQRRMARAERLAALGELMAGVAHEIRNPLT 404 (607)
T ss_pred CCCCCCEEEEECCCCC-EEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7742124899605883-499999985357689858899999995778999999999999999999999998998715499
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999999985079984788889999999888876430045421200584358534678999999998750356816999
Q gi|254780450|r 437 AILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLT 516 (803)
Q Consensus 437 ~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~ 516 (803)
+|.||+++|.... ..++..+++..|.+.++|+..||+++|+|||.+..+++++++++++.++..+++... +..++.+.
T Consensus 405 ~I~g~~elL~~~~-~~~~~~~~l~~i~~e~~Rl~~li~~lL~~sr~~~~~~~~v~l~~l~~~~~~~~~~~~-~~~~i~l~ 482 (607)
T PRK11360 405 AIRGYVQILRQQT-SDPIHQEYLSVVLREVDSLNKVIQQLLEFSRPRHSQWQQVSLNALVEEVLVLVQTAG-VQARVDFI 482 (607)
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHH-HHCCCEEE
T ss_conf 9999999986689-987999999999999999999999999852778888847869999999999999988-86796899
Q ss_pred EECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHH
Q ss_conf 81489722699871699999999874227652067885799999850421012245566788978999999788668844
Q gi|254780450|r 517 VDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPD 596 (803)
Q Consensus 517 ~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~ 596 (803)
++.+..+|.+.+|+.+|+|||.||+.||.+| ++++|+|+|++... ..+++.|+|+|||+|||++
T Consensus 483 ~~~~~~~~~v~~D~~~l~qvl~NLi~NAi~a--~~~~g~I~i~~~~~--------------~~~~v~i~V~D~G~GI~~e 546 (607)
T PRK11360 483 TELDNELPPINADRELLKQVLLNILINAVQA--ISARGKIRIRTWQY--------------SDSQQAISIEDNGCGIDLE 546 (607)
T ss_pred EECCCCCCEEEECHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEEEE--------------CCCEEEEEEEECCCCCCHH
T ss_conf 9818988769988899999999999996286--28996799999993--------------6987999999867686989
Q ss_pred HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 54202322221013577653038899999851675499996188942999994375766
Q gi|254780450|r 597 IMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQE 655 (803)
Q Consensus 597 ~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~ 655 (803)
.+++||+||||||. +||||||+|||+||+.|||+|+++|++|+||||+|+||..+.+
T Consensus 547 ~~~~IFepF~ttk~--~GtGLGLaI~k~Ive~hgG~I~v~S~~g~GT~F~i~LPl~~~~ 603 (607)
T PRK11360 547 LLKKIFDPFFTTKA--SGTGLGLALSQRIINAHQGDIRVASLPGYGTTFTLILPINPQG 603 (607)
T ss_pred HHHHHCCCCCCCCC--CCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 99645589754899--9813379999999998899899996699986999998068988
No 11
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310 Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO)..
Probab=100.00 E-value=0 Score=452.60 Aligned_cols=322 Identities=23% Similarity=0.356 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCC--
Q ss_conf 999999999834675099985020699831554444454884661798666610111122024666655541123345--
Q gi|254780450|r 285 IANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISP-- 362 (803)
Q Consensus 285 ~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 362 (803)
+...||+...++.|++|.++|.++.|.+||+++.++||-.-+.+ .|+.+..++-. +.|.+.+..... . ..+
T Consensus 3 ~~~~rf~~a~~AlPDavv~ld~~~~I~W~N~~A~~~LGl~~p~D-~Gq~i~~l~R~---P~F~~yl~~~~~-t--~~p~~ 75 (339)
T TIGR02966 3 ALLSRFRAAAQALPDAVVVLDEEGQIEWCNKAAERLLGLRWPDD-LGQRITNLIRH---PEFVEYLAAGRF-T--SEPEQ 75 (339)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCCCHH-HCCCHHHHCCC---HHHHHHHHCCCC-C--CCCCC
T ss_conf 68899999997589829997289837862148898627427345-07702121057---679999733555-5--78853
Q ss_pred CCEE-EECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4048-873885068999987304566776138999998502321122101234444446876303425664158999999
Q gi|254780450|r 363 IDSP-HPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLS 441 (803)
Q Consensus 363 ~e~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~ 441 (803)
.+.. -+....+.+.+.+.|. ..+ ..+.+++|||+.+++|+ |+ ..|+||||||||||||+|.||
T Consensus 76 L~~~~~p~~~~~~l~~r~~PY---~~~----~~Ll~~RDvT~l~rLe~-------mR--rDFVANVSHELRTPLTVl~Gy 139 (339)
T TIGR02966 76 LELPDSPINEERVLEIRIMPY---GEE----QKLLVARDVTRLRRLEQ-------MR--RDFVANVSHELRTPLTVLRGY 139 (339)
T ss_pred EEECCCCCCCCCEEEEEEEEE---CCC----CEEEEEECHHHHHHHHH-------HH--HHHCCCCCCCCCCCHHHHHHH
T ss_conf 110468888664799999975---698----37999876368999986-------53--431144521114540355689
Q ss_pred HHHHHHHC-CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEEHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99998507-99847-88889999999888876430045421200584----35853467899999999875035681699
Q gi|254780450|r 442 SDHLLLQS-RSSDA-SFADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLNLTEVIGNLRMMIQKLISEPPQVKL 515 (803)
Q Consensus 442 ~~ll~~~~-~~~~~-~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~l~~~i~~~~~~~~~~~~~~~~i~~ 515 (803)
+|.|.... ...++ ...++..+.+.+.||..||+|||.+||+|+.. -++|++..++..+...++++..+. +..+
T Consensus 140 LEtl~~~~~~~~~~~~~~~l~~M~~Q~~RM~~LV~dLL~LSrlE~~~~~~~~~~V~~~~ll~~l~~~A~~ls~~~-~h~I 218 (339)
T TIGR02966 140 LETLEDGPVDEDPEEWNRALELMQEQSQRMQSLVEDLLTLSRLESAANPPEDEPVDVPALLDHLRDEAEALSQGK-QHQI 218 (339)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CEEE
T ss_conf 997552367788088999999999999999999999988876415788845565687999999999999997118-8389
Q ss_pred EEEC-CCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 9814-897226998716999999998742276520678857999998504210122455667889789999997886688
Q gi|254780450|r 516 TVDY-ERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMS 594 (803)
Q Consensus 516 ~~~~-~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~ 594 (803)
.++. +.. ..|.||+.+|+++|.||++|| .+|+|+||+|+|++.... +.++|+|+|||+|||
T Consensus 219 ~~~~pd~~-~~~~G~e~~L~SAf~NLv~NA--ikYTp~gg~I~v~W~~~~---------------~ga~fsV~DtG~GI~ 280 (339)
T TIGR02966 219 TFEIPDAG-LDLLGNEDELRSAFSNLVSNA--IKYTPEGGTITVRWRRDE---------------GGAEFSVTDTGIGIA 280 (339)
T ss_pred EEEECCCC-CCCCCCHHHHHHHHHHHHHHH--HHCCCCCCEEEEEEEEEC---------------CEEEEEEEECCCCCC
T ss_conf 99823888-530144777999999998875--300899887999999857---------------803999987798987
Q ss_pred HHHHHHCCCCCCC-----CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 4454202322221-----013577653038899999851675499996188942999994
Q gi|254780450|r 595 PDIMEKIFEPFFT-----TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 595 ~~~~~~iFepF~t-----tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
|+++.||+|+||. +|..| ||||||||||.++++|++++.|+|++|+||||++.+
T Consensus 281 ~eHipRLTERFYRVD~~RSR~tG-GTGLGLAIVKH~L~rH~a~L~I~Se~G~GS~F~~~F 339 (339)
T TIGR02966 281 PEHIPRLTERFYRVDKSRSRDTG-GTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 339 (339)
T ss_pred HHHCCCCCCEEEEECHHHCCCCC-CCCCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEC
T ss_conf 31377542001230533415788-984336899998741487899998853760688759
No 12
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=100.00 E-value=0 Score=445.28 Aligned_cols=334 Identities=21% Similarity=0.290 Sum_probs=253.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHH
Q ss_conf 78999999999999999999834675099985020699831554444454884661798666610111122024666655
Q gi|254780450|r 274 KNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDA 353 (803)
Q Consensus 274 t~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 353 (803)
...++..+++.....||+..+++.|++|.++|.+|+|..||+++.++| |+...+..|+++..++...+ +.+.+.
T Consensus 84 ~~~~~~~~~l~~~~~rfr~~~ealpDavvv~d~~g~I~~~N~aAe~l~-G~~~~~~~G~~I~~Lir~p~---f~~~~~-- 157 (431)
T PRK11006 84 LRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGNIFWCNGLAQQLL-GLRWPEDNGQNILNLLRYPE---FTQYLK-- 157 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHH-CCCCHHHCCCCHHHHHCCHH---HHHHHH--
T ss_conf 987999999999999999999648976999989995883569999983-89983326997789808845---999986--
Q ss_pred HHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 54112334540488738850689999873045667761389999985023211221012344444468763034256641
Q gi|254780450|r 354 NDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNN 433 (803)
Q Consensus 354 ~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~ 433 (803)
......+.+. ....++.+.+.+.+. .+ + ..+.+++|||++|++|+ +..+|+|+|||||||
T Consensus 158 --~~~~~~p~~~--~~~~~~~le~~~~p~--~~--~---~~llv~rDiT~~~~lE~---------~R~dFvAnvSHELRT 217 (431)
T PRK11006 158 --TRDFSRPLNL--VLNNGRHLEIRVMPY--TE--G---QLLMVARDVTQMHQLEG---------ARRNFFANVSHELRT 217 (431)
T ss_pred --CCCCCCCEEE--ECCCCCEEEEEEEEC--CC--C---CEEEEEEECCHHHHHHH---------HHHHHHHHCCHHHHH
T ss_conf --2665576255--438874799999773--79--9---58999985659999999---------999999862086617
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf 58999999999985079984788889999999888876430045421200584----35853467899999999875035
Q gi|254780450|r 434 VLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLNLTEVIGNLRMMIQKLISE 509 (803)
Q Consensus 434 pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~l~~~i~~~~~~~~~~~~~ 509 (803)
|||+|.||+++|.......+...+++..|.++++|+..||+|+|++||++++. .+.+++..++..+......+..+
T Consensus 218 PLT~I~G~~ElL~~~~~~~~~~~~~l~~i~~~~~Rm~~LI~dLL~lsrle~~~~~~~~~~vd~~~ll~~l~~~~~~l~~~ 297 (431)
T PRK11006 218 PLTVLQGYLEMMEEQPLEGPMREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVLEREAQTLSQK 297 (431)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999857999809999999999999999999999999997642587521365313999999999999999862
Q ss_pred CCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 68169998148972269987169999999987422765206788579999985042101224556678897899999978
Q gi|254780450|r 510 PPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDT 589 (803)
Q Consensus 510 ~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~ 589 (803)
...+ .++.++++ .|.+|+.+|+||+.||++|| .++.|+||.|.|++.. .++.+.|+|+|+
T Consensus 298 ~~~i--~~~~~~~~-~v~~D~~~L~qvl~NLi~NA--ikytp~g~~I~I~~~~---------------~~~~~~i~V~D~ 357 (431)
T PRK11006 298 KHTI--TFEVDDSL-KVLGNEDQLRSAISNLVYNA--VNHTPEGTHITVRWQR---------------VPHGAEFSVEDN 357 (431)
T ss_pred CCCC--CCCCCCCC-EEEECHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEEE---------------ECCEEEEEEEEC
T ss_conf 5666--55689982-79978999999999999989--9747999779999999---------------499899999983
Q ss_pred CCCCCHHHHHHCCCCCCCC-----CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 8668844542023222210-----1357765303889999985167549999618894299999437576
Q gi|254780450|r 590 GIGMSPDIMEKIFEPFFTT-----KKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQ 654 (803)
Q Consensus 590 G~GI~~~~~~~iFepF~tt-----k~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~ 654 (803)
|+|||+++++|||||||+. ++.| ||||||+|||+|+++|||+|+++|++|+||||++.||....
T Consensus 358 G~GI~~e~~~riFerFyR~d~~rs~~~g-GtGLGLaIvK~Ive~HgG~I~v~S~~g~Gt~F~~~lP~~~v 426 (431)
T PRK11006 358 GPGIAPEHIPRLTERFYRVDKARSRQTG-GSGLGLAIVKHALNHHDSRLEIESTVGKGTRFSFVLPERLI 426 (431)
T ss_pred CCCCCHHHHHHHCCCCEECCCCCCCCCC-CCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCHHH
T ss_conf 8785989999862688828888879999-55489999999999859989999559985599998486563
No 13
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=100.00 E-value=0 Score=418.41 Aligned_cols=339 Identities=23% Similarity=0.273 Sum_probs=259.1
Q ss_pred HHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 99998346750999850206998315544444548846617986666101111220246666555411233454048873
Q gi|254780450|r 290 FNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQ 369 (803)
Q Consensus 290 l~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 369 (803)
..++++++|++|.++|.+|+|+++|++++++| |++..++.|+++.+++++.+.. .+.+...+.........+....
T Consensus 9 ~~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~-g~~~~~~~G~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~- 84 (348)
T PRK11073 9 AGQILNSLINSILLLDDNLAIHYANPAAQQLL-AQSSRKLFGTPLPELLSYFSLN--IELMQESLQAGQGFTDNEVTLV- 84 (348)
T ss_pred HHHHHHHHHHHHEEECCCCCEEEECHHHHHHH-CCCHHHHCCCCHHHHHCCCCCC--HHHHHHHHHCCCCCCCCEEEEE-
T ss_conf 99999866079649989797012839999997-8598998599689984665301--8999999973897413239999-
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88506899998730456677613899999850232112210123444444687630342566415899999999998507
Q gi|254780450|r 370 DENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQS 449 (803)
Q Consensus 370 ~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~ 449 (803)
.+++..++.++..+..+ ...+....|||++|++++++.+..++.++++|++++||||||||++|.|++++|....
T Consensus 85 ~~~~~~~~~~~~~~~~~-----~~~l~~~~di~~~k~l~~e~~~~~~~~~~~e~~~~iaHelrnPL~~I~g~~~ll~~~~ 159 (348)
T PRK11073 85 IDGRSHILSLTAQRLPE-----GMILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKAL 159 (348)
T ss_pred ECCEEEEEEEEEEECCC-----CEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 89969999999998258-----6899999962799999999999999999999998401874785799999999997417
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEC
Q ss_conf 99847888899999998888764300454212005843585346789999999987503568169998148972269987
Q gi|254780450|r 450 RSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTD 529 (803)
Q Consensus 450 ~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D 529 (803)
..+...+++..|.++++|+.++|+++|+++|..... ..++..++.++..++.....+ ++.+..+..+.+|.+.+|
T Consensus 160 -~d~~~~e~~~~i~~~~~rl~~li~~ll~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~--~i~i~~~~~~~~~~i~~d 234 (348)
T PRK11073 160 -PDPALTEYTKVIIEQADRLRNLVDRLLGPQRPGTHI--TESIHKVAERVVQLVSLELPD--NVRLIRDYDPSLPELAHD 234 (348)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCEEEEC
T ss_conf -998999999999999999999999986441268877--547999999999999985657--809999607888726446
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC
Q ss_conf 16999999998742276520678857999998504210122455667889789999997886688445420232222101
Q gi|254780450|r 530 LSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK 609 (803)
Q Consensus 530 ~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk 609 (803)
+.+|+|||.||++||.+|+ .+++|.|+|+++...... .........++|+|+|+|+|||++.+++||+||||||
T Consensus 235 ~~~l~qVl~NLl~NAik~~-~~~~g~i~i~~~~~~~~~-----i~~~~~~~~~~i~V~D~G~GI~~e~~~~iF~pf~ttk 308 (348)
T PRK11073 235 PDQIEQVLLNIVRNALQAL-GPEGGEITLRTRTAFQLT-----LHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR 308 (348)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEEECCCCC-----CCCCCCCEEEEEEEEECCCCCCHHHHHHHCCCCCCCC
T ss_conf 8788999999999999983-669977999996433322-----1453233048999999088789899997377836799
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 357765303889999985167549999618894299999437
Q gi|254780450|r 610 KVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 610 ~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
. +||||||+|||+||+.|||+|+|+|+||+ |||+|+||.
T Consensus 309 ~--~GtGLGL~ivk~ive~hgG~I~v~S~~g~-t~F~i~lPl 347 (348)
T PRK11073 309 E--GGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 347 (348)
T ss_pred C--CCCCHHHHHHHHHHHHCCCEEEEEEECCE-EEEEEEEEE
T ss_conf 8--98177899999999986998999982891-999999963
No 14
>PRK10364 sensor protein ZraS; Provisional
Probab=100.00 E-value=0 Score=425.05 Aligned_cols=236 Identities=30% Similarity=0.486 Sum_probs=211.4
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85023211221012344444468763034256641589999999999850799847888899999998888764300454
Q gi|254780450|r 399 VEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLA 478 (803)
Q Consensus 399 ~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd 478 (803)
.++++|+++|++++|+||+.++|+|+|+|||||||||++|.|++++|..+.+..++.++++..|.+.++|+..+|+++|+
T Consensus 217 ~~~~~R~~Lq~el~r~EKLAaLG~LAAgVAHEIRNPLtsI~G~AqlL~~~~~~~~e~~e~~~iI~~E~~RL~~iI~~LL~ 296 (455)
T PRK10364 217 RYLRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLE 296 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77899999999999998999999999998998856499999999998676999857999999999999999999999998
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 21200584358534678999999998750356816999814897226998716999999998742276520678857999
Q gi|254780450|r 479 FSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTV 558 (803)
Q Consensus 479 ~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i 558 (803)
|+|.....++++++++++.++..++.+.. +..++++.++.++.+|.|.+|+.+|+|||.||+.||.+| ++++|.|+|
T Consensus 297 faRp~~~~~~~vdL~~li~~~l~l~~~~a-~~k~I~l~~~~~~~lp~I~~D~~~L~QVl~NLl~NAi~A--~~~gg~I~I 373 (455)
T PRK10364 297 LVKPTHLALQAVDLNTLINHSLQLVSQDA-NSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQA--IGQHGVISV 373 (455)
T ss_pred HHCCCCCCCCEECHHHHHHHHHHHHHHHH-HHCCEEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHH--CCCCCEEEE
T ss_conf 72899898848849999999999998688-648909999738888759888999999999999999997--589977999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 99850421012245566788978999999788668844542023222210135776530388999998516754999961
Q gi|254780450|r 559 RTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESE 638 (803)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~ 638 (803)
++.. .++++.|+|+|||+|||++.+++||+||||||. +||||||+|||+||+.|||+|+++|+
T Consensus 374 ~~~~---------------~~~~V~I~V~DnG~GIp~E~l~rIFePFfTTK~--~GTGLGLaIv~~IVe~HgG~I~v~S~ 436 (455)
T PRK10364 374 TASE---------------SGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA--EGTGLGLAVVHNIVEQHGGTIQVASQ 436 (455)
T ss_pred EEEE---------------CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9998---------------599899999976999797898786589764898--97028899999999988997999955
Q ss_pred CCCCEEEEEEECCCCC
Q ss_conf 8894299999437576
Q gi|254780450|r 639 VGKGTIFRIFLPRYVQ 654 (803)
Q Consensus 639 ~g~Gt~F~i~lP~~~~ 654 (803)
+|+||+|+|+||....
T Consensus 437 ~G~GT~FtI~LPl~a~ 452 (455)
T PRK10364 437 EGKGATFTLWLPVNIT 452 (455)
T ss_pred CCCCEEEEEEEECCCC
T ss_conf 9998799999827875
No 15
>PRK09303 adaptive-response sensory kinase; Validated
Probab=100.00 E-value=0 Score=385.74 Aligned_cols=221 Identities=30% Similarity=0.380 Sum_probs=179.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 44444687630342566415899999999998507--998478888999999----9888876430045421200584--
Q gi|254780450|r 415 QKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQS--RSSDASFADLMEIKH----NANRAAILVRQLLAFSRKQTMR-- 486 (803)
Q Consensus 415 ~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~--~~~~~~~~~l~~i~~----~~~r~~~li~~lLd~sr~~~~~-- 486 (803)
++.++|++|+|+||||||||||+|.|++++|.... +..+...+.+..+.. ..+++..||+|+|++||+++++
T Consensus 144 e~~r~K~~Fla~vSHELRTPLTaI~g~~e~L~~~~~~~~~~~~~~~l~~l~~~~~~~~~~L~~LI~DLLd~sr~e~g~l~ 223 (378)
T PRK09303 144 EQLKFKDRLLAMLAHDLRTPLTAASLAVETLELGQIDPSEELSPALIEQLQDQARRQLEEIERLITDLLEVGRTRWEALQ 223 (378)
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999999736761531999999999986425797416679999999999999999999999999999887538863
Q ss_pred --EEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEEC
Q ss_conf --35853467899999999875035681699981489722699871699999999874227652067-885799999850
Q gi|254780450|r 487 --LTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNI 563 (803)
Q Consensus 487 --~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~ 563 (803)
++.+|+.+++.++...+++... .+++.+..+.+.++|.|.+|+.+|+|||.||++| |+||+ +||.|+|++..
T Consensus 224 l~~~~~dL~~lv~evi~~~~~~a~-~k~i~l~~dip~dlp~V~aD~~rL~QVl~NLL~N---AiKyT~~gG~I~I~~~~- 298 (378)
T PRK09303 224 FNPQKLDLGSLCQEVILELEKRWL-AKSLEIQTDIPSDLPSVYADQRRIRQVLLNLLDN---AIKYTPEGGTITLTMLH- 298 (378)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHH-HCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHH---HHHHCCCCCEEEEEEEE-
T ss_conf 146887699999999999898998-3897899976899972876899999999999999---99858999869999998-
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC--CCCCCCCHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 42101224556678897899999978866884454202322221013--5776530388999998516754999961889
Q gi|254780450|r 564 PSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKK--VGEGTGLGLSVVYGIIRQSGGYILPESEVGK 641 (803)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~--~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~ 641 (803)
..+++|.|+|+|||+|||++.+++||+|||...+ ..+||||||+|||+||++|||+|||+|++|+
T Consensus 299 -------------~~~~~V~isV~DtG~GIp~e~~~rIFe~F~R~~~s~~~~GtGLGLaIvk~IVe~HgG~I~V~S~~g~ 365 (378)
T PRK09303 299 -------------RTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPRDEGTEGYGIGLSVCRRIVEVHYGQIWVDSEPGQ 365 (378)
T ss_pred -------------ECCCEEEEEEEEECCCCCHHHHHHHCCCCEECCCCCCCCCEEHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf -------------1399899999980788898999875636344568999883127999999999987997999943998
Q ss_pred CEEEEEEECCCC
Q ss_conf 429999943757
Q gi|254780450|r 642 GTIFRIFLPRYV 653 (803)
Q Consensus 642 Gt~F~i~lP~~~ 653 (803)
||||+|+||.+.
T Consensus 366 GS~Ft~tLPv~r 377 (378)
T PRK09303 366 GSCFHFTLPVYR 377 (378)
T ss_pred CEEEEEEEECCC
T ss_conf 359999982478
No 16
>PRK09776 putative sensor protein; Provisional
Probab=100.00 E-value=5.5e-44 Score=327.99 Aligned_cols=386 Identities=11% Similarity=0.080 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99862118999999852498099995999389810668867099956731561100027876167899999998324323
Q gi|254780450|r 19 EMTIKPKIPLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEG 98 (803)
Q Consensus 19 ~~~lr~~~~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 98 (803)
+..+++||+++|.++|.++.|+++++.+|+++++|+++|+|+||+.++..+.....+.+++|.......+.+... |.-.
T Consensus 296 ~~~l~~SE~rfR~~~e~saiGmAlV~~dGr~l~VN~alc~mlGYs~~ELl~ltf~diThPdDl~~dl~~~~~Lla-Gei~ 374 (1116)
T PRK09776 296 RKHISESETRFRNAMEYSAIGMALVGTEGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLS-GEIN 374 (1116)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHHHCCHHHHCCCCCHHHHHHHHHHHHC-CCCC
T ss_conf 888776799999998746664699868981898169999884989999852989881696217778999999976-9966
Q ss_pred CEEEEEEECCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 20389860100004898679999999999823788069999999783388999999999999999998525961999929
Q gi|254780450|r 99 SEEFRLMQSLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADH 178 (803)
Q Consensus 99 ~~e~~~~~~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~ 178 (803)
. +.+ +....++||+..|..++++..... .+.+..++.++.|||++|++|+++++..+++..+.+.++.|+|.+|.
T Consensus 375 ~--y~l--EKRyirkDG~~vW~~ltvSlvRd~-~G~p~~fI~~v~DIterK~aE~~lr~l~erl~la~ea~~iGiwe~d~ 449 (1116)
T PRK09776 375 S--YSM--EKRYYNRDGDVVWALLAVSLVRDT-DGTPLYFIAQIEDINELKRTEQVNERLMERITLANEAGGIGIWEWDL 449 (1116)
T ss_pred C--CCC--EEEEECCCCCEEEEEEEEEEEECC-CCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 4--541--124673699799999899999769-99844899999733377999999999999999998624766355205
Q ss_pred CCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCC-CEEEEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf 996897646798642999678045632188808820489999998620026-7148889999804897999999556765
Q gi|254780450|r 179 QGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQ-KITTLDLDLRRIDNGHGIPVKIVHHILA 257 (803)
Q Consensus 179 ~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~g~~~~v~~~~~~~~ 257 (803)
....+++|+.+.+++|++.+. ......|.+.+||+|...+.........+ .....|+++.+. +|+..|+.....+..
T Consensus 450 ~~~~i~~~~r~~~l~g~~~~~-~~~~~~w~~~ihPdD~~~v~~~~~~~l~~~~~~d~E~Rl~~~-dG~~r~i~~~a~~~~ 527 (1116)
T PRK09776 450 KPNIISWDKRMFELYEIPPHI-KPNWQVWYACLHPEDRQRVEKEIRDALQGRSPFKLEFRIVVP-DGEIRHIRALANRVL 527 (1116)
T ss_pred CCCCEECCHHHHHHHCCCCCC-CCCHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC-CCCEEEEEEEEEEEE
T ss_conf 665021137899984888222-668899987239156899999999997158875604678847-997899986214898
Q ss_pred CCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHH
Q ss_conf 38885547999998607899999999999999999983467509998502069983155444445488466179866661
Q gi|254780450|r 258 SCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSI 337 (803)
Q Consensus 258 ~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~ 337 (803)
+.+|.+.+.+++..|||++|+++++|.+++++++.++++++++|+..|.+|+++++|+++.+++ |+...+..|++...+
T Consensus 528 d~~G~~~r~~G~~~DITe~K~~eeaL~e~~erl~~~l~si~d~vi~tD~~~ri~~~Npaae~~t-G~~~~e~~G~~~~~v 606 (1116)
T PRK09776 528 NKDGEVERLLGINMDMTEVRQLNEALFEEKERLHITLDSIGEAVVCTDAAMKVTFMNPVAEKMT-GWTQEEALGVPLLTV 606 (1116)
T ss_pred CCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHH-CCCHHHHCCCCHHHH
T ss_conf 6899889887313232077899999999999999998340224899737886788869999982-988799849987897
Q ss_pred C---CCCCCCCHHHHHHHHHHHCCC-CCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHH
Q ss_conf 0---111122024666655541123-345404887388506899998730456677613899999850232112210123
Q gi|254780450|r 338 V---HKNEKRKIIAALYDANDQKSD-ISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQ 413 (803)
Q Consensus 338 ~---~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~q 413 (803)
+ ++++................. ....+..+...+|....++.+..+.++.+|...+.+.++.|||++|++|+++..
T Consensus 607 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~G~~~~v~~s~~pi~~~~g~~~g~V~v~~Dit~~k~~~~~l~~ 686 (1116)
T PRK09776 607 LHITFGDNGPLMENPVEICLADTSRSYLEQDVVLHSRSGGSYDVQYSIAPLSTLDGENIGSVLVFQDVTESRAMLRQLSY 686 (1116)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 00366442111121999997407873312353688269968999973045134778554479852012299999999987
No 17
>PRK10490 sensor protein KdpD; Provisional
Probab=100.00 E-value=0 Score=366.17 Aligned_cols=219 Identities=26% Similarity=0.371 Sum_probs=180.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEEH
Q ss_conf 44687630342566415899999999998507998-4788889999999888876430045421200584----358534
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSS-DASFADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLNL 492 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~-~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~l 492 (803)
+-.+.|++.|||||||||++|.|++++|....... ++....+..|.+.+.|+..||++|||+||++++. .+++++
T Consensus 662 rLRsalLssVSHDLRTPLtsI~G~a~~L~~~~~~~~~~~~~~~~~I~~e~~rL~rLV~nLLdmsRle~G~l~l~~~~~~l 741 (895)
T PRK10490 662 QLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTL 741 (895)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 89999998603435786999999999985477788288999999999999999999999999987636997664642069
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 67899999999875035681699981489722699871699999999874227652067885799999850421012245
Q gi|254780450|r 493 TEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFN 572 (803)
Q Consensus 493 ~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~ 572 (803)
.+++..+...+.+... ..++.++ .+.++|.|.+|+.+|+|||.||+.|| +++.|++|.|.|+...
T Consensus 742 ~evv~~al~~~~~~~~-~~~i~v~--~~~~~~~v~~D~~lleQVL~NLl~NA--iKytp~~~~I~v~a~~---------- 806 (895)
T PRK10490 742 EEVVGSALQMLEPGLS-QHPINLS--LPEPLTLIHVDGPLFERVLINLLENA--VKYAGAQAEIGIDAHV---------- 806 (895)
T ss_pred HHHHHHHHHHHHHHHC-CCCEEEE--ECCCCCEEEECHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEEE----------
T ss_conf 9999999999986612-6967999--56987069878999999999999999--9858999709999999----------
Q ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC--CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 566788978999999788668844542023222210135--776530388999998516754999961889429999943
Q gi|254780450|r 573 YSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKV--GEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 573 ~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~--g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
.++.+.|+|+|+|+|||++.+++||++||+..+. ..||||||+|||+||+.|||+|+++|.+|+||||+|+||
T Consensus 807 -----~~~~v~i~V~D~G~GIp~~~~~~IFe~F~R~~~~~~~~GtGLGLaI~k~IveAhGG~I~~~s~~ggGa~F~~~LP 881 (895)
T PRK10490 807 -----EGENLQLDVWDNGPGIPPGQEQLIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAENRPEGGACFRVTLP 881 (895)
T ss_pred -----ECCEEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEC
T ss_conf -----799999999980898797999975568712899999997447899999999987998999956998069999832
Q ss_pred CCCCCC
Q ss_conf 757664
Q gi|254780450|r 651 RYVQEH 656 (803)
Q Consensus 651 ~~~~~~ 656 (803)
...+..
T Consensus 882 l~~pP~ 887 (895)
T PRK10490 882 QEKPPE 887 (895)
T ss_pred CCCCCC
T ss_conf 999899
No 18
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=100.00 E-value=0 Score=368.06 Aligned_cols=463 Identities=20% Similarity=0.252 Sum_probs=352.3
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHH--HCCCHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999985259619999299968976467986429996780456321888--0882048999999862002671488899
Q gi|254780450|r 160 QNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGD--ITAGEGLALIQAIRTEPSHQKITTLDLD 237 (803)
Q Consensus 160 ~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 237 (803)
+.+|..+|+||++|-++|....|+|+|.+|.+++||..+|++|++.+... .++ ...++..|......+.+.-.+
T Consensus 4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~tTP---peVYQaLWg~la~qkPW~G~L- 79 (496)
T TIGR02938 4 ELYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRTTP---PEVYQALWGSLAEQKPWAGKL- 79 (496)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCCCCCE-
T ss_conf 5688866228803643101456999956632155865621112554012685887---179999998863058986510-
Q ss_pred EEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCC
Q ss_conf 99804897999999556765388855479999986078999999999999999999834675099985020699831554
Q gi|254780450|r 238 LRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHF 317 (803)
Q Consensus 238 ~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~ 317 (803)
+.|+++|+.+-..++..|+.+..|...++.|..+|+||.-+.|+..+.+...+.++++++|..+.++|++||++--|+.|
T Consensus 80 lNRrkDg~lYLAeLtvaPvlneaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN~~y 159 (496)
T TIGR02938 80 LNRRKDGELYLAELTVAPVLNEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDNLEY 159 (496)
T ss_pred ECCCCCCCHHHHHHCCCCHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECCHHH
T ss_conf 00011653002220202000146881587325454357889988897646789999878654100056998688167768
Q ss_pred CCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEE-EEEEEEEEECCCCC--------
Q ss_conf 444454884661798666610111122024666655541123345404887388506-89999873045667--------
Q gi|254780450|r 318 LKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRY-FRFYISATLDRSTE-------- 388 (803)
Q Consensus 318 ~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~-~~~~~~~~~~~~~~-------- 388 (803)
+++.... ..+.....+.+++-|+-++.+.+. ...+..+..-|.++-.+.||. .|+.+.........
T Consensus 160 k~La~DL-~v~epa~~~l~lLre~~~e~~~~~----~~q~~afsn~E~rfD~ggGR~~RWlSc~g~~i~~e~~~ad~fF~ 234 (496)
T TIGR02938 160 KKLASDL-KVEEPAELLLKLLREELAEDLEEL----ENQEKAFSNKELRFDRGGGRSARWLSCAGRVIRIEEDSADSFFA 234 (496)
T ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHH----CCCCCEECCCEEEEECCCCCCCCCEEECCCEEEEECCCCCEEEC
T ss_conf 8787421-414417999998508765278652----02110101540354168878850102023235311364011561
Q ss_pred -CCCEEEEEEEEECCCCCCCCCC---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCHH-
Q ss_conf -7613899999850232112210---------12344444468763034256641589999999999850--7998478-
Q gi|254780450|r 389 -APEEQAILYTVEITEQKALEAR---------MAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQ--SRSSDAS- 455 (803)
Q Consensus 389 -~~~~~~i~~~~DITerk~~E~~---------L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~--~~~~~~~- 455 (803)
....+.+.++-|||++|+.+++ +++.||++++-|=+...=|.|..|||.|......|.++ .+.+++.
T Consensus 235 ~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~rEtl~AAIhrl~gP~NlisaA~~~L~RRlGD~AGn~a~ 314 (496)
T TIGR02938 235 AAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALRETLSAAIHRLQGPLNLISAAISVLERRLGDDAGNDAV 314 (496)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 68998305663647888999999999998999989988888766688888885287107889999863205832379799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH-HHHHCCCCCEEEEEECCCCCEEEEECHHHHH
Q ss_conf 888999999988887643004542120058435853467899999999-8750356816999814897226998716999
Q gi|254780450|r 456 FADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMI-QKLISEPPQVKLTVDYERDLWGVKTDLSQFE 534 (803)
Q Consensus 456 ~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~ 534 (803)
...+++...++.....-+++..=.|..++.. ++|+|+++.|+..++ .++++.| |-+++.+...+|+|.|-+.+++
T Consensus 315 ~~~lqqa~~ag~e~~e~L~~~IP~s~~e~~~--pVNlN~~lrdvi~l~T~rLLA~G--IvVdW~Pa~~LP~~~G~e~~lR 390 (496)
T TIGR02938 315 AALLQQALAAGREALEALEKVIPQSDAEAVV--PVNLNQVLRDVITLLTERLLAAG--IVVDWQPAAVLPAVLGSESRLR 390 (496)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCC--CEECCCCCCCCCHHHCCCHHHH
T ss_conf 9999999886399999750578877244546--64277899999986105575575--4151656101622207852578
Q ss_pred HHHHHHHHHHHHHHCCCC--CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC-
Q ss_conf 999998742276520678--85799999850421012245566788978999999788668844542023222210135-
Q gi|254780450|r 535 QVLVNLCVNAHHAIMLKE--SGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKV- 611 (803)
Q Consensus 535 qvl~NLl~NA~~A~~~~~--~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~- 611 (803)
-.|-.|+.||++|+...+ .-++.| ...-.++.|+++|.|+|||||++..-++||||||||..
T Consensus 391 slfK~LvdNAIeaM~~~~~~RREL~i---------------~t~~~~~li~~~i~DsGPGIP~dlr~kvFEPFFttK~~~ 455 (496)
T TIGR02938 391 SLFKALVDNAIEAMAQKGVKRRELSI---------------LTAVEDDLIRVEIEDSGPGIPADLRLKVFEPFFTTKASS 455 (496)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHH---------------HHHHCCCEEEEEEEECCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 99999999999985307841023101---------------022308568999973587987244225236732268887
Q ss_pred -CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf -776530388999998516754999961889429999943
Q gi|254780450|r 612 -GEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 612 -g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
++|.|.||+.+++||..|+|=|.++..+-+|....|.||
T Consensus 456 Gr~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~ 495 (496)
T TIGR02938 456 GRKHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFE 495 (496)
T ss_pred CCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEC
T ss_conf 7842334626889997504987973688877735777623
No 19
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=356.31 Aligned_cols=345 Identities=22% Similarity=0.338 Sum_probs=263.0
Q ss_pred EEHHHHHHHH-HHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHH
Q ss_conf 8607899999-999999999999983467509998502069983155444445488466179866661011112202466
Q gi|254780450|r 271 VSRKNCDSGD-PSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAA 349 (803)
Q Consensus 271 ~Dit~~k~~e-~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 349 (803)
-|.|++-+.. +-+.+...++.+++-...+|+...|..|+++..|..+.+++ +.+.++..++++.+++.-++.-.+.+.
T Consensus 93 n~Lt~~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L-~~~~E~~~~~~i~elL~i~d~y~~~dL 171 (459)
T COG5002 93 NDLTKRVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKML-GVSKEDALGRSILELLKIEDTYTFEDL 171 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHH-CCCHHHHHCCCHHHHHCCCCCEEHHHH
T ss_conf 7899999999876788888899899987076576457786899350799984-867787716537888577543028888
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Q ss_conf 66555411233454048873885068999987304566776138999998502321122101234444446876303425
Q gi|254780450|r 350 LYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAH 429 (803)
Q Consensus 350 ~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isH 429 (803)
+.. . .....+. .+ .+......++-...+...|...+.|.+..|+|||.+.|+++ .+|.|++||
T Consensus 172 ~e~----~-~s~lld~--~~-~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~Er---------RefvanvSH 234 (459)
T COG5002 172 VEK----N-DSLLLDS--SD-EEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERER---------REFVANVSH 234 (459)
T ss_pred HHC----C-CCEEEEE--CC-CCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHH---------HHHHHHCCH
T ss_conf 725----9-8289860--47-88637999988888511466440699873143878889999---------999886140
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEEHHHHHHHHHHHH
Q ss_conf 6641589999999999850799847--88889999999888876430045421200584----35853467899999999
Q gi|254780450|r 430 DFNNVLTAILLSSDHLLLQSRSSDA--SFADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLNLTEVIGNLRMMI 503 (803)
Q Consensus 430 elr~pL~~I~g~~~ll~~~~~~~~~--~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~l~~~i~~~~~~~ 503 (803)
||||||+++.+|.|.|..... .|+ +..++..-.+..+|+..||+|||.+||+...+ .+.+++...+..+..-.
T Consensus 235 ElRTPltsmksyLEALe~ga~-~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~e~inft~fl~~ii~R~ 313 (459)
T COG5002 235 ELRTPLTSMKSYLEALEEGAW-EDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNKEWINFTAFLNEIINRF 313 (459)
T ss_pred HHCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 314736789999999746874-4712326899874788999999999998772576325666578887488999999999
Q ss_pred HHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEE
Q ss_conf 87503568169998148972269987169999999987422765206788579999985042101224556678897899
Q gi|254780450|r 504 QKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVL 583 (803)
Q Consensus 504 ~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~ 583 (803)
+....+...-.+.-+++....+|..|+..+.||+-|+++|| -++.|+||.|++++.. .++++.
T Consensus 314 e~~~~~e~~~~~vR~~p~~~~~veiD~DK~tQVldNii~NA--~KYsP~Gg~Itv~~~~---------------~~~~v~ 376 (459)
T COG5002 314 EMILKKETIARFVRDIPKQDIWVEIDPDKMTQVLDNIISNA--LKYSPDGGRITVSVKQ---------------RETWVE 376 (459)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHH--HHCCCCCCEEEEEEEE---------------ECCEEE
T ss_conf 99875677889996088886489967068999999998777--5248999739999963---------------075899
Q ss_pred EEEEECCCCCCHHHHHHCCCCCCC-----CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 999978866884454202322221-----013577653038899999851675499996188942999994375
Q gi|254780450|r 584 VEVEDTGIGMSPDIMEKIFEPFFT-----TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRY 652 (803)
Q Consensus 584 i~V~D~G~GI~~~~~~~iFepF~t-----tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~ 652 (803)
++|+|.|.|||.+.+++||++||. +|..| ||||||+|+|.||+.|||+||++|..|+||||+++||..
T Consensus 377 iSI~D~G~gIPk~d~~~iFdrfyRvdkARsR~~g-GTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~ 449 (459)
T COG5002 377 ISISDQGLGIPKEDLEKIFDRFYRVDKARSRKMG-GTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYS 449 (459)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCC
T ss_conf 9974688899840689999988522366540378-776129999999997098577760458861799995466
No 20
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=100.00 E-value=8.4e-45 Score=333.45 Aligned_cols=310 Identities=22% Similarity=0.250 Sum_probs=213.1
Q ss_pred HHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCC-CHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99998346750999850206998315544444548-84661798666610111122024666655541123345404887
Q gi|254780450|r 290 FNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNC-TEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHP 368 (803)
Q Consensus 290 l~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 368 (803)
..+++++..+||..+|.+|+|+.+|+++.++++.. .+.+..|+...++..... +...+.........+..
T Consensus 223 r~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g~~~~~~~~~~~-------l~~vl~~~~~~~d~e~~-- 293 (541)
T PRK11086 223 RQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLSTDVHSWSPVSR-------LKEVLRTGTPRRDEEIN-- 293 (541)
T ss_pred HHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCCCCHHHHCCCHH-------HHHHHHCCCCCCEEEEE--
T ss_conf 999985300169997589879998499998743358874312551777275455-------99998448853107999--
Q ss_pred CCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 38850689999873045667761389999985023211221012344444468763034256641589999999999850
Q gi|254780450|r 369 QDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQ 448 (803)
Q Consensus 369 ~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~ 448 (803)
-.++.+ .++..|.. .++...+.+.+++|+||.++++++|... +...+++...+||++|||+.|.|+.++-.
T Consensus 294 -~~~~~l--~~~~~pi~-~~g~~~G~V~~~rD~TE~~~L~~~L~~v---~~~~e~Lra~sHE~~n~L~~I~Gll~l~~-- 364 (541)
T PRK11086 294 -INGRLL--LTNTVPVR-VNGEIIGAISTFRDKTEVRQLAQRLDGV---VNYADALRAQSHEFMNKLHVILGLLHLKS-- 364 (541)
T ss_pred -ECCEEE--EEEEEEEE-ECCEEEEEEEEEECHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCH--
T ss_conf -899899--99977765-4890689999984427899999999999---99999987611666405799988886430--
Q ss_pred CCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEE
Q ss_conf 799847888899999998-8887643004542120058435853467899999999875035681699981489722699
Q gi|254780450|r 449 SRSSDASFADLMEIKHNA-NRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVK 527 (803)
Q Consensus 449 ~~~~~~~~~~l~~i~~~~-~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~ 527 (803)
.++..+++..+.... ..+..+++++.+ + .+..++ ..-..++. ..++++.++....+|..
T Consensus 365 ---~d~~~~~i~~~~~~~~~~~~~l~~~i~~----------p-~la~~L---lgk~~~a~--E~gi~L~i~~~~~l~~~- 424 (541)
T PRK11086 365 ---YDQLEDYILKTANNYQEEIGSLLGKIKS----------P-VIAGFL---LGKISRAR--ELGITLIISEDSQLPDS- 424 (541)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHCCC----------H-HHHHHH---HHHHHHHH--HCCCEEEEECCCCCCCC-
T ss_conf ---8999999999999999999999986116----------8-889999---98899999--66985997067767788-
Q ss_pred ECH---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCC
Q ss_conf 871---69999999987422765206788579999985042101224556678897899999978866884454202322
Q gi|254780450|r 528 TDL---SQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEP 604 (803)
Q Consensus 528 ~D~---~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFep 604 (803)
.|+ .+|.|||.||+.||.+|.+.+++|+|.|+... .++.+.|+|+|||+|||++.+++||++
T Consensus 425 ~~~~~~~~l~tVlgNLidNAi~A~~~~~~g~V~v~l~~---------------~~~~l~i~V~D~G~GI~~e~~~~IFer 489 (541)
T PRK11086 425 DDEDQVHELITILGNLIENALEAVSNEEGGEISVSLHY---------------RHGWLHIEVSDDGPGIAPEEIEAIFDK 489 (541)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE---------------CCCEEEEEEEECCCCCCHHHHHHHCCC
T ss_conf 86466657999999999999997316899679999998---------------899899999977988597799887179
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 22101357765303889999985167549999618894299999437576
Q gi|254780450|r 605 FFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQ 654 (803)
Q Consensus 605 F~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~ 654 (803)
|||||. +||||||+|||++|+.|||+|+|+|++|+||+|+|+||....
T Consensus 490 g~StK~--~g~GLGLaIvk~iVe~~gG~I~veS~~g~GT~Fti~LP~~~~ 537 (541)
T PRK11086 490 GYSTKG--SNRGVGLYLVKQSVENLGGSIAVESEPGIGTQFFVQIPWDGK 537 (541)
T ss_pred CCCCCC--CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCC
T ss_conf 874189--991103999999999859989999669993799999606876
No 21
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=100.00 E-value=1.4e-45 Score=341.12 Aligned_cols=213 Identities=24% Similarity=0.326 Sum_probs=177.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEEEEHH
Q ss_conf 44687630342566415899999999998507998478888999999988887643004542120058----43585346
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM----RLTVLNLT 493 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~----~~~~~~l~ 493 (803)
+...+|++++||||||||++|.|++|+|... .+.+...+++..|.+.++|+..||+++|++||.+.+ +++.+++.
T Consensus 254 ~~~e~fva~vSHELRTPLt~I~g~~ElL~~~-~~~e~~~~~l~~I~~e~~RL~~LV~~LL~larle~~~~~~~~~~vdl~ 332 (475)
T PRK11100 254 AYVEQYVQTLTHELKSPLAAIRGAAELLQED-PPPEDRQRFTGNILAQSARLQQLIDRLLELARLEQRQELEVLEPVALA 332 (475)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHH
T ss_conf 9999999854086511799999999997389-998999999999999999999999999999875158876755487599
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEEECCCCCCCCCC
Q ss_conf 789999999987503568169998148972269987169999999987422765206-7885799999850421012245
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIML-KESGSLTVRTRNIPSTEIHTFN 572 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~-~~~G~v~i~~~~~~~~~~~~~~ 572 (803)
+++.++...++.... ..++.+.++.+ + ..|.+|+.+|+|++.||+.|| +|| +++|.|+|++..
T Consensus 333 ~ll~~~~~~~~~~~~-~~~i~l~~~~~-~-~~v~~D~~~L~qvl~NLl~NA---ikys~~~g~I~I~~~~---------- 396 (475)
T PRK11100 333 ALLEELVEAREAQAA-AKGITLRLRPD-D-AAVLGDPFLLRQALGNLLDNA---IDFTPEGGTITLSAER---------- 396 (475)
T ss_pred HHHHHHHHHHHHHHH-HCCEEEEEECC-C-CEEEECHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE----------
T ss_conf 999999999999998-68929999578-7-669708999999999999999---9738999779999999----------
Q ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC---CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 56678897899999978866884454202322221013---577653038899999851675499996188942999994
Q gi|254780450|r 573 YSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKK---VGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 573 ~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~---~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
.++.+.|+|+|+|+|||++.+++||||||++.+ ..+||||||+|||+|+++|||+|+++|.+|+||+|+|+|
T Consensus 397 -----~~~~~~i~V~D~G~GIp~e~l~~IFerFys~~r~~~~~~GsGLGLsIvk~Iv~~HgG~I~v~s~~~~Gt~f~i~L 471 (475)
T PRK11100 397 -----DGEQVALSVEDSGPGIPDYALPRIFERFYSLPRPANGRKSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTL 471 (475)
T ss_pred -----ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEC
T ss_conf -----699999999984888788999886167803777999988630799999999998599899996699807999993
Q ss_pred CCC
Q ss_conf 375
Q gi|254780450|r 650 PRY 652 (803)
Q Consensus 650 P~~ 652 (803)
|++
T Consensus 472 P~~ 474 (475)
T PRK11100 472 PRH 474 (475)
T ss_pred CCC
T ss_conf 899
No 22
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-44 Score=332.25 Aligned_cols=343 Identities=23% Similarity=0.295 Sum_probs=266.6
Q ss_pred HHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEE-C
Q ss_conf 999834675099985020699831554444454884661798666610111122024666655541123345404887-3
Q gi|254780450|r 291 NRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHP-Q 369 (803)
Q Consensus 291 ~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-~ 369 (803)
..++++.+..+..+|.++.+.|+|++++.+| +.+...+.+.++.+++... ......+.+.........+.+..+. .
T Consensus 10 ~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~-~~Sa~~L~~~~l~~l~~~g--s~ll~ll~q~~~~~~~~~~~~v~l~~~ 86 (363)
T COG3852 10 GAILNNLINPVLLVDDELAIHYANPAAEQLL-AVSARRLAGTRLSELLPFG--SLLLSLLDQVLERGQPVTEYEVTLVIL 86 (363)
T ss_pred HHHHHCCCCCEEEECCCCCEEECCHHHHHHH-HHHHHHHHCCCHHHHCCCC--CHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 7687455785699827782896088899999-9778888248778871777--288999989998358851010244207
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88506899998730456677613899999850232112210123444444687630342566415899999999998507
Q gi|254780450|r 370 DENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQS 449 (803)
Q Consensus 370 ~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~ 449 (803)
+....+..++.+++. ..| .++..+.-+..+.++..++.|.-+.++...++++.+|||+|||.+|.|.++||....
T Consensus 87 g~~~~v~~~v~~v~~--~~G---~vlle~~~~~~~~ridre~~q~a~~~a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~l 161 (363)
T COG3852 87 GRSHIVDLTVAPVPE--EPG---SVLLEFHPRDMQRRLDREQTQHAQQRAVKGLVRGLAHEIKNPLGGIRGAAQLLERAL 161 (363)
T ss_pred CCCCEEEEEEEECCC--CCC---EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 865237899862268--997---489995325777676699998888889999998778872285310144999997458
Q ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEE
Q ss_conf 99847-88889999999888876430045421200584358534678999999998750356816999814897226998
Q gi|254780450|r 450 RSSDA-SFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKT 528 (803)
Q Consensus 450 ~~~~~-~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~ 528 (803)
.|+ .+++.+.|.+.++|+.+|++.+.-||-.......++++..+++.+..+...-. ..++.+.-+|++.+|.|.+
T Consensus 162 --pd~~~~~lt~lIieE~DRl~~LVDRme~~~~~rp~~r~~~NIH~VLerV~~lv~~e~--~~~i~l~rdYDPSLP~v~~ 237 (363)
T COG3852 162 --PDEALRELTQLIIEEADRLRNLVDRLEVLGPQRPGDRVPVNIHEVLERVRALVEAEF--ADNVRLIRDYDPSLPEVLG 237 (363)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCCCCCC
T ss_conf --986778999999999999999999987508789855354319999999999985436--7755885027998853236
Q ss_pred CHHHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCC
Q ss_conf 7169999999987422765206--78857999998504210122455667889789999997886688445420232222
Q gi|254780450|r 529 DLSQFEQVLVNLCVNAHHAIML--KESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF 606 (803)
Q Consensus 529 D~~~l~qvl~NLl~NA~~A~~~--~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ 606 (803)
|+.||.|+++||+.||.+|+.. .++|.|+++++..-.-. ..+....--+.++|.|||+|||++.++++|.||.
T Consensus 238 d~DqliQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~-----i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~V 312 (363)
T COG3852 238 DRDQLIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLT-----IAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMV 312 (363)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEE-----CCCCEEEEEEEEEEECCCCCCCHHHHHHCCCCCC
T ss_conf 98999999999999999971677877856999722425887-----1674246631169861899998678643002302
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 10135776530388999998516754999961889429999943757
Q gi|254780450|r 607 TTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYV 653 (803)
Q Consensus 607 ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~ 653 (803)
|||. .||||||+|+.+|+..|||-|.++|.|| .|+|+|+||..+
T Consensus 313 s~r~--~GsGLGLala~~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 313 SGRE--GGTGLGLALAQNLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred CCCC--CCCCCCHHHHHHHHHHCCCEEEEECCCC-CEEEEEEEECCC
T ss_conf 0688--9866148999998985297898742689-458999863354
No 23
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-45 Score=338.69 Aligned_cols=236 Identities=33% Similarity=0.486 Sum_probs=204.5
Q ss_pred ECCCCCCCC-------CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 502321122-------101234444446876303425664158999999999---9850799847888899999998888
Q gi|254780450|r 400 EITEQKALE-------ARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDH---LLLQSRSSDASFADLMEIKHNANRA 469 (803)
Q Consensus 400 DITerk~~E-------~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~l---l~~~~~~~~~~~~~l~~i~~~~~r~ 469 (803)
.|.||.+.| .+|.|+.|+.++|++.+++|||||+||++|..|++. |+.+ ...++..+.+..|..-.+|+
T Consensus 357 EIaer~~ae~~LR~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaaiRt~adna~~lLer-gr~e~a~~Nl~~I~~LteRm 435 (603)
T COG4191 357 EIAEREQAEAALRRAQDELVQAGKLAALGQMSAGIAHELNQPLAAIRTYADNARLLLER-GRTEEARENLERISALTERM 435 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH
T ss_conf 99988878999998789999877789988888887887437089998677789999875-88677776799999999999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76430045421200584358534678999999998750356816999814897226998716999999998742276520
Q gi|254780450|r 470 AILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIM 549 (803)
Q Consensus 470 ~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~ 549 (803)
..|..+|..|+|+.....+++.+.++|.+...++.+-+ +...+.+..+.++..++|++++.||+|||.||++||.||++
T Consensus 436 a~It~~Lk~FArk~~~a~~~v~l~~ai~~Al~ll~~R~-~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvNLl~NALDA~~ 514 (603)
T COG4191 436 AAITAHLKSFARKSRDAAGPVSLREAIEGALELLRGRL-RAAGVELELDLPDAPLWVMANEIRLEQVLVNLLQNALDAMA 514 (603)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHC
T ss_conf 88999999983367666677657999999999988764-13676265048987755641322099999999998999845
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 67885799999850421012245566788978999999788668844542023222210135776530388999998516
Q gi|254780450|r 550 LKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQS 629 (803)
Q Consensus 550 ~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~ 629 (803)
-++.+.|.|+... +++.+.|+|+||||||+|+.+.++|+||||||..|+|.||||+||++|++.+
T Consensus 515 ~~~~~~i~i~~~~---------------~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~~~~GLGLGLaIS~~i~~d~ 579 (603)
T COG4191 515 GQEDRRLSIRAQR---------------EGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKPVGKGLGLGLAISQNIARDL 579 (603)
T ss_pred CCCCCEEEEEEEE---------------CCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8878716999871---------------5986999982699998978998613775036766677560289899899981
Q ss_pred CCEEEEEECCCCCEEEEEEECCC
Q ss_conf 75499996188942999994375
Q gi|254780450|r 630 GGYILPESEVGKGTIFRIFLPRY 652 (803)
Q Consensus 630 gG~i~v~S~~g~Gt~F~i~lP~~ 652 (803)
||+|.+.+.++.|+.|+|.||+.
T Consensus 580 GGsL~v~n~~~~Ga~F~i~L~~a 602 (603)
T COG4191 580 GGSLEVANHPEGGASFTIELRRA 602 (603)
T ss_pred CCEEEEECCCCCCEEEEEEEECC
T ss_conf 88079402788844899996157
No 24
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=100.00 E-value=1.7e-44 Score=331.63 Aligned_cols=215 Identities=18% Similarity=0.257 Sum_probs=175.1
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEEEEHHH
Q ss_conf 4687630342566415899999999998507998478888999999988887643004542120058----435853467
Q gi|254780450|r 419 AVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM----RLTVLNLTE 494 (803)
Q Consensus 419 a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~----~~~~~~l~~ 494 (803)
...+|++++||||||||++|.|+++.|.... .++..+.+..+...+.|+..||++++++|+.+.+ +.+.+++.+
T Consensus 240 ~rr~f~a~iSHELRTPLt~i~g~le~l~d~~--~~~~~e~l~~i~~e~~rl~~Lv~dLl~ls~~~~~~~~~~~~~vdl~~ 317 (467)
T PRK10549 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV--RKFTPESVASLQAEVGTLTKLVDDLHQLSLSDEGALAYQKTPVDLVP 317 (467)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 9999999888875158999999999987165--54579999999999999999999999998754567544673333899
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCC
Q ss_conf 899999999875035681699981489722699871699999999874227652067-8857999998504210122455
Q gi|254780450|r 495 VIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 495 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~~~~~~~~~~~ 573 (803)
++.++...++.... ..++.+.++.+..+ .+.+|+.+|+|++.||+.|| +|++ ++|.|.|++..
T Consensus 318 ll~~~~~~~~~~~~-~~~i~l~~~~~~~~-~v~~D~~~L~qvl~NLl~NA---ikyt~~~g~I~I~~~~----------- 381 (467)
T PRK10549 318 LLEVAGGAFRERFA-SRGLTLQFSLPDSA-TVFGDPDRLMQLFNNLLENS---LRYTDSGGSLHISAEQ----------- 381 (467)
T ss_pred HHHHHHHHHHHHHH-HCCCEEEEECCCCC-EEEECHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE-----------
T ss_conf 99999999999998-45958999759884-69977999999999999999---9848999879999999-----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC----CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 66788978999999788668844542023222210135----77653038899999851675499996188942999994
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKV----GEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~----g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
.++.+.|+|+|+|+|||++.+++||+|||+++.. ..|+||||||||+||+.|||+|+++|.+|+||+|+|.|
T Consensus 382 ----~~~~v~i~V~D~G~GI~~e~l~~IFe~Fyr~d~sr~r~~gGsGLGLaIvk~Iv~~HgG~I~v~s~~~~G~~f~i~L 457 (467)
T PRK10549 382 ----HDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVEL 457 (467)
T ss_pred ----ECCEEEEEEEEECCCCCHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEE
T ss_conf ----7999999999818887989999866898738888889999612899999999998399899996799857999995
Q ss_pred CCCCCC
Q ss_conf 375766
Q gi|254780450|r 650 PRYVQE 655 (803)
Q Consensus 650 P~~~~~ 655 (803)
|.....
T Consensus 458 Pl~~~~ 463 (467)
T PRK10549 458 PLERDL 463 (467)
T ss_pred ECCCCC
T ss_conf 279998
No 25
>PRK09835 sensor kinase CusS; Provisional
Probab=100.00 E-value=7.1e-44 Score=327.14 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=172.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEEHH
Q ss_conf 446876303425664158999999999985079984788889999999888876430045421200584----3585346
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLNLT 493 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~l~ 493 (803)
+...+|++++||||||||+.|.|++++++......+...+.+..+.+.++|+..||+++|++||.+... .+.+|+.
T Consensus 260 ~~~~~f~a~vSHELRTPLt~i~~~~e~~l~~~~~~~~~~~~l~~~~~e~~rl~~lv~~lL~lar~e~~~~~~~~~~~dl~ 339 (482)
T PRK09835 260 TRQSNFSADIAHEIRTPITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKKMLNLA 339 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 99999999988987189999999999985389986999999999999999999999999998774358876667345699
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCC
Q ss_conf 7899999999875035681699981489722699871699999999874227652067-885799999850421012245
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNIPSTEIHTFN 572 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~~~~~~~~~~ 572 (803)
+++.++...++... +..++.+.+.. +...|.+|+.+|+|+|.||++|| +||+ .||.|+|++..
T Consensus 340 ~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~~v~~d~~~l~~~l~NLl~NA---ikys~~g~~i~i~~~~---------- 403 (482)
T PRK09835 340 DEVGKVFDFFEALA-EDRGVELRFVG--DPCQVAGDPLMLRRALSNLLSNA---LRYTPEGEAIVVRCQT---------- 403 (482)
T ss_pred HHHHHHHHHHHHHH-HHCCCEEEEEC--CCEEEEECHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE----------
T ss_conf 99999999999999-86892899827--87089987999999999999999---9848999869999998----------
Q ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC----CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf 5667889789999997886688445420232222101----357765303889999985167549999618894299999
Q gi|254780450|r 573 YSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK----KVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF 648 (803)
Q Consensus 573 ~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk----~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~ 648 (803)
.++.+.|+|+|+|+|||++.+++||+|||+.. +.++|+||||||||.|++.|||+|+++|+ ++||+|+|+
T Consensus 404 -----~~~~v~i~V~D~G~GI~~e~~~~iFerFyR~d~sr~~~~~G~GLGLaIvk~Iv~~hgG~i~v~s~-~~Gt~f~i~ 477 (482)
T PRK09835 404 -----VDHQVQVVVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRFVIS 477 (482)
T ss_pred -----ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCEEEEEE
T ss_conf -----29989999996587889899987667975189888899994648999999999982998999963-991899999
Q ss_pred ECCC
Q ss_conf 4375
Q gi|254780450|r 649 LPRY 652 (803)
Q Consensus 649 lP~~ 652 (803)
||+.
T Consensus 478 lPr~ 481 (482)
T PRK09835 478 LPRL 481 (482)
T ss_pred EECC
T ss_conf 3078
No 26
>KOG0519 consensus
Probab=100.00 E-value=2.8e-45 Score=336.54 Aligned_cols=373 Identities=21% Similarity=0.279 Sum_probs=275.5
Q ss_pred HHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE----EEH
Q ss_conf 4687--6303425664158999999999985079984788889999999888876430045421200584358----534
Q gi|254780450|r 419 AVGT--LAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTV----LNL 492 (803)
Q Consensus 419 a~~~--~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~----~~l 492 (803)
..++ |.++++||||+||+. |+...+. ....+..+..+...+..++...+.++++++|.++++.+..+. |++
T Consensus 218 ~~sq~~~~~~~sHeir~p~~~--~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~v~~g~~~l~~~rf~l 294 (786)
T KOG0519 218 SPSQKGFLATLSHEIRTPLNG--GMLGGLS-DTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSKVESGKGELVAKRFDL 294 (786)
T ss_pred CCCCHHCCCCCCCEEECCCCC--CCCCEEE-CCCCCHHHHHHHCCCHHHHHCHHHHHHHHHHHCCCCCCCCCCEECCCCH
T ss_conf 742011134456324434445--6641220-3442156898743001220000137777640113532355403223452
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCE-EEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 67899999999875035681699981489722-69987169999999987422765206788579999985042101224
Q gi|254780450|r 493 TEVIGNLRMMIQKLISEPPQVKLTVDYERDLW-GVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTF 571 (803)
Q Consensus 493 ~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~ 571 (803)
..++..+...+.....+. ...+.+..+.+.| .+.+|+.++.||+.|+++| |+||+..|++..+............
T Consensus 295 ~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~v~~de~~~~qv~~n~v~n---aik~t~~~~i~~~~~~~~~~~~~~~ 370 (786)
T KOG0519 295 RTLLNFVISLLSELSQAK-YAILVLDLSSGVPRNVRGDEARLRQVIANLVSN---AIKFTHAGHLEESVIAREELSESND 370 (786)
T ss_pred HHHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCC---CCCCCCCCCEEEEEEECHHHHHHHH
T ss_conf 666677787766655136-734652078777642035610110003332014---4354446622466651211004678
Q ss_pred ------------CC----------CCCCC---C--------CEEEEEEEECCCCCCHHHHHH-CCCCCC-----CCCCCC
Q ss_conf ------------55----------66788---9--------789999997886688445420-232222-----101357
Q gi|254780450|r 572 ------------NY----------SDLPT---K--------DMVLVEVEDTGIGMSPDIMEK-IFEPFF-----TTKKVG 612 (803)
Q Consensus 572 ------------~~----------~~~~~---~--------~~v~i~V~D~G~GI~~~~~~~-iFepF~-----ttk~~g 612 (803)
.. ..... + -.-.+.+.|+|.||+...... +|.+|- +++.++
T Consensus 371 ~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~ 450 (786)
T KOG0519 371 VLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYG 450 (786)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCHHHHHHHHCCCHHCCCCCC
T ss_conf 99754577653515566788874133124220421223576652022366640685023304655545146610034568
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCC---------------------------
Q ss_conf 76530388999998516754999961889429999943757664433333322---------------------------
Q gi|254780450|r 613 EGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQESHYSHD--------------------------- 665 (803)
Q Consensus 613 ~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~~~~~~~~~~~--------------------------- 665 (803)
|||+|+.+|+.+++.|+|.+.+.+.++.|+||++.++...............
T Consensus 451 -gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 529 (786)
T KOG0519 451 -GTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQ 529 (786)
T ss_pred -CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEE
T ss_conf -7645332223288998867432110034752223312356887310110344544555430122232003357620699
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q gi|254780450|r 666 -------------------------------------------------------------------------------- 665 (803)
Q Consensus 666 -------------------------------------------------------------------------------- 665 (803)
T Consensus 530 ~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (786)
T KOG0519 530 VLAELLGISVDVSLSLSLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKLSSGSGLSLALCPENS 609 (786)
T ss_pred EEECCCCCCCCCCCCHHHHHHHCCCCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 98012665411144310566643666100244223310303467777204565540034542002455542012365677
Q ss_pred --------------------------------------CCCCCCCCC---CCCCCCCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf --------------------------------------223544445---333478756999769889999999999988
Q gi|254780450|r 666 --------------------------------------IAIIPQEEP---ADLTGNSAIVLLVEDEDSVRRGSKRMLETR 704 (803)
Q Consensus 666 --------------------------------------~~~~~~~~~---~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~ 704 (803)
....+.... .+....+.+|||||||+.++++.+.+|+..
T Consensus 610 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~l~g~~iLlvddn~vn~~Va~~~l~~~ 689 (786)
T KOG0519 610 QLMEGNIGLVPSSDGLPKSPSLCLEACLRVELNSMGSKLSGNPEKLAEPRDSKLLTGPKILLVDDNPVNRKVATGMLKKL 689 (786)
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCHHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 77531433555302477558899875112001112455578843446764221103676578558710199999899973
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCCEEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 989999899899989998659995489985878898889999999986-8998299990678589987676057980750
Q gi|254780450|r 705 GYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT-YPSLKFIFISGYAEDAFSKNLPKDAKFSFLS 783 (803)
Q Consensus 705 g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~-~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l~ 783 (803)
|++|.++.||.||+.++. .+..||+|+||++||+|||||++++||+. ..++||||+||++.++..+.|.+.|+.+||+
T Consensus 690 g~~v~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~ 768 (786)
T KOG0519 690 GAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPIVALTADADPSTEEECLEVGMDGYLS 768 (786)
T ss_pred CCEEEECCCHHHHHHHCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEEC
T ss_conf 964574288699998638-9986327999757755554999999987516788779974687578899999828764674
Q ss_pred CCCCHHHHHHHHHHHHC
Q ss_conf 79799999999999851
Q gi|254780450|r 784 KPFSLKQLATSVHELLQ 800 (803)
Q Consensus 784 KP~~~~~L~~~i~~~L~ 800 (803)
|||+...|...+++.|.
T Consensus 769 KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519 769 KPFTLEKLVKILREFLL 785 (786)
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 63318999999999733
No 27
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-43 Score=320.85 Aligned_cols=217 Identities=30% Similarity=0.425 Sum_probs=176.8
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEE
Q ss_conf 44687630342566415899999999998507-9984788-889999999888876430045421200584----35853
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQS-RSSDASF-ADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLN 491 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~-~~~~~~~-~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~ 491 (803)
+--+.|++.+||||||||++|.|.++.|.... ..+++++ +.+..|.+.++++..+|++|||++|++++- .++..
T Consensus 658 ~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~~~~ 737 (890)
T COG2205 658 RLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLDWVL 737 (890)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 99999998741024672898861488864234015937699999999999999999999877677771378641445203
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 46789999999987503568169998148972269987169999999987422765206788579999985042101224
Q gi|254780450|r 492 LTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTF 571 (803)
Q Consensus 492 l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~ 571 (803)
+.+++.+...-+.+.. ....+.++.+.+++.+.+|...++|||.||+.|| +++.|.+.+|.|....
T Consensus 738 veEvVg~Al~r~~k~~---~~~~i~v~~~~dl~li~~D~~LieQVLiNLleNA--~Kyap~~s~I~I~~~~--------- 803 (890)
T COG2205 738 VEEVVGEALQRLRKRF---TGHKIVVSVPVDLPLIHVDSPLIEQVLINLLENA--LKYAPPGSEIRINAGV--------- 803 (890)
T ss_pred HHHHHHHHHHHHHHHC---CCCEEEEECCCCCCEEECCHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEEE---------
T ss_conf 9999999999866304---7835899558887167647889999999999878--7428999769999998---------
Q ss_pred CCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC--CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 5566788978999999788668844542023222210135--77653038899999851675499996188942999994
Q gi|254780450|r 572 NYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKV--GEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 572 ~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~--g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
.++.++|+|.|+|+|||++.+++||+|||+..+. ..|+|||||||++||+.|||+|++++.++.|+||+|.|
T Consensus 804 ------~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~~~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~L 877 (890)
T COG2205 804 ------ERENVVFSVIDEGPGIPEGELERIFDKFYRGNKESATRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTL 877 (890)
T ss_pred ------ECCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEE
T ss_conf ------24569999971899988567887646541488877888766229999999997488689877699935899994
Q ss_pred CCCCC
Q ss_conf 37576
Q gi|254780450|r 650 PRYVQ 654 (803)
Q Consensus 650 P~~~~ 654 (803)
|....
T Consensus 878 P~~~~ 882 (890)
T COG2205 878 PVEED 882 (890)
T ss_pred ECCCC
T ss_conf 06888
No 28
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=316.02 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=166.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CEEEEEHHHH
Q ss_conf 4687630342566415899999999998507998478888999999988887643004542120058---4358534678
Q gi|254780450|r 419 AVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM---RLTVLNLTEV 495 (803)
Q Consensus 419 a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~---~~~~~~l~~~ 495 (803)
...+|++++||||||||+.|.++++++..... + ..++..|...++|+..||+++|++||.+.. ..+.+++.++
T Consensus 242 ~q~~f~advSHELRTPLt~i~~~~~ll~~~~~--~--~~~l~~i~~e~~rl~~li~~lL~lsr~~~~~~~~~e~~~l~~l 317 (461)
T PRK09470 242 SQQRLLSDISHELRTPLTRLQLATALLRRRQG--E--SKELERIETEAQRLDSMINDLLVLSRNQVKNHLVRETIKANSL 317 (461)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--C--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECHHHH
T ss_conf 99999986455532789999999998640447--8--5999999999999999999999997620546555651539999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 99999999875035681699981489722699871699999999874227652067885799999850421012245566
Q gi|254780450|r 496 IGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSD 575 (803)
Q Consensus 496 i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~ 575 (803)
+.++........ +..++.+.+....+...|.+|+.+|.|++.||+.| |+|+++ +.|+|++..
T Consensus 318 ~~~v~~~~~~~a-~~~~~~l~~~~~~~~~~v~~d~~~l~~vl~NLl~N---Aikys~-~~i~v~~~~------------- 379 (461)
T PRK09470 318 WSEVLEDAAFEA-EQMGKSLTVNQPPGPWPINGNPNALESALENIVRN---ALRYSH-TKIEVGFSV------------- 379 (461)
T ss_pred HHHHHHHHHHHH-HHCCCEEEEEECCCCEEEEECHHHHHHHHHHHHHH---HHHHCC-CCEEEEEEE-------------
T ss_conf 999999999999-97597699972787548997899999999999999---997489-958999999-------------
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC----CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 78897899999978866884454202322221013----57765303889999985167549999618894299999437
Q gi|254780450|r 576 LPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKK----VGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 576 ~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~----~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
.++++.|+|+|+|+|||++.+++||+|||+... ...|+||||+|||+||+.|||+|+++|.++.|++|+|.||.
T Consensus 380 --~~~~~~i~V~D~G~GI~~e~l~~iFepFyR~d~sr~~~~gG~GLGLaIv~~iv~~hgG~i~~~~~~~~G~~~~i~LPl 457 (461)
T PRK09470 380 --DKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEARDRESGGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPL 457 (461)
T ss_pred --ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf --999999999977999899999876279722898888999971388999999999829989999779985699999658
Q ss_pred CCC
Q ss_conf 576
Q gi|254780450|r 652 YVQ 654 (803)
Q Consensus 652 ~~~ 654 (803)
...
T Consensus 458 ~~~ 460 (461)
T PRK09470 458 YKR 460 (461)
T ss_pred CCC
T ss_conf 899
No 29
>PRK10604 sensor protein RstB; Provisional
Probab=100.00 E-value=3.8e-42 Score=315.00 Aligned_cols=209 Identities=24% Similarity=0.314 Sum_probs=165.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEEEEHH
Q ss_conf 44687630342566415899999999998507998478888999999988887643004542120058----43585346
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM----RLTVLNLT 493 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~----~~~~~~l~ 493 (803)
++..+|++++||||||||+.|.+.++++ .+ ..++.. ..+.+...++..||+++|++||.+.. +++.+++.
T Consensus 210 ~~~r~f~a~vSHELRTPLt~i~~~lell-~~--~~~~e~---~~l~~~i~~l~~lv~~lL~larl~~~~~~l~~~~~dl~ 283 (433)
T PRK10604 210 ASKKQLIDGIAHELRTPLVRLRYRLEMS-DN--LSAAES---QALNRDIGQLEALIEELLTYARLDRPQNELHLSEPDLP 283 (433)
T ss_pred HHHHHHHHHCCHHHCCHHHHHHHHHHHH-CC--CCHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 9999998740244316899999999970-49--985789---99999999999999999999763689787877023699
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 78999999998750356816999814897226998716999999998742276520678857999998504210122455
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~ 573 (803)
+++.++...++... ....+.+.... ....+.+|+.+++|++.||+.| |+|++ +|.|.|++..
T Consensus 284 ~~i~~~~~~~~~~~-~~~~i~l~~~~--~~~~~~~D~~~l~~~l~NLl~N---A~kys-~~~v~v~~~~----------- 345 (433)
T PRK10604 284 AWLSTHLADIQAVT-PEKTVRLKTPH--QGDYGALDMRLMERVLDNLLNN---ALRYS-HSTVETSLLL----------- 345 (433)
T ss_pred HHHHHHHHHHHHHC-CCCCEEEECCC--CCCEEEECHHHHHHHHHHHHHH---HHHCC-CCCEEEEEEE-----------
T ss_conf 99999999999765-59967997179--8866987899999999999999---98718-9978999999-----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC---C--CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf 6678897899999978866884454202322221---0--1357765303889999985167549999618894299999
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT---T--KKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF 648 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t---t--k~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~ 648 (803)
.++++.|+|+|+|+|||++.+++||+|||. + +.. .|+||||||||+||+.|||+|+++|.+|+||+|++.
T Consensus 346 ----~~~~~~i~V~D~G~GI~~e~~~~IFepFyR~d~sr~~~~-gG~GLGLaIvk~Iv~~hgG~i~v~s~~~gGa~f~i~ 420 (433)
T PRK10604 346 ----DGDQATLIVEDDGPGIAPEERERIFEPFVRLDPSRDRAT-GGCGLGLAIVHSIALAMGGSVNCDTSELGGARFSFS 420 (433)
T ss_pred ----ECCEEEEEEEECCCCCCHHHHHHHCCCCEECCCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEE
T ss_conf ----999999999977878898999986579452888889999-961388999999999819989999669984799999
Q ss_pred ECCCCCC
Q ss_conf 4375766
Q gi|254780450|r 649 LPRYVQE 655 (803)
Q Consensus 649 lP~~~~~ 655 (803)
||.+...
T Consensus 421 LP~~~~~ 427 (433)
T PRK10604 421 WPVWHNI 427 (433)
T ss_pred ECCCCCC
T ss_conf 7799999
No 30
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-40 Score=302.26 Aligned_cols=337 Identities=20% Similarity=0.269 Sum_probs=255.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999999999999998346750999850206998315544444548846617986666101111220246666555411
Q gi|254780450|r 278 SGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQK 357 (803)
Q Consensus 278 ~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (803)
++..++.++...+..++++.+.|+..+|.+|.+..+|++.++|| +.+..+..|.++..+. | .+.+.+..+....
T Consensus 360 ~ak~~~e~rr~f~E~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l-~~~~~~~~G~~lsa~a-p----~~~~vf~~~~a~~ 433 (712)
T COG5000 360 RAKDALEQRRRFLEAVLSGLTAGVIGFDNRGCITTVNPSAEQIL-GKPFDQLLGQSLSAIA-P----ELEEVFAEAGAAA 433 (712)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCHHHHHH-CCCHHHHHCHHHHHHH-H----HHHHHHHHHHHHC
T ss_conf 87888999998899998158503899747870776260178884-6870676440266421-3----7899999765403
Q ss_pred CCCCCCCEEEECC-CCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 2334540488738-850689999873045667761389999985023211221012344444468763034256641589
Q gi|254780450|r 358 SDISPIDSPHPQD-ENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLT 436 (803)
Q Consensus 358 ~~~~~~e~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~ 436 (803)
......+..+.+. +.+...+..+..+ ++ ...+.+.++-|||..- ++||..|.++-+..++|||+||||
T Consensus 434 ~~~~~~ev~~~r~g~~rtl~Vq~t~~~---~d-~~~gyVvt~DDITdLV-------~AQRs~AW~dVArRIAHEIKNPLT 502 (712)
T COG5000 434 RTDKRVEVKLAREGEERTLNVQATREP---ED-NGNGYVVTFDDITDLV-------IAQRSAAWGDVARRIAHEIKNPLT 502 (712)
T ss_pred CCCCCEEEECCCCCCCEEEEEEEEECC---CC-CCCCEEEEECCHHHHH-------HHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 877420100014787415666753214---44-6885699963508999-------999987899999999887249986
Q ss_pred HHHHHHHHHHHHCCCC--C-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999998507998--4-78--88899999998888764300454212005843585346789999999987503568
Q gi|254780450|r 437 AILLSSDHLLLQSRSS--D-AS--FADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPP 511 (803)
Q Consensus 437 ~I~g~~~ll~~~~~~~--~-~~--~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 511 (803)
+|+.++|.|..+.... + .+ .+...+|.+......+||++.-+|+|.-+.+++..||++++.++..+.+-. +.
T Consensus 503 PIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p~~e~~dL~~ll~e~~~L~e~~---~~ 579 (712)
T COG5000 503 PIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAPKLEKSDLRALLKEVSFLYEIG---ND 579 (712)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCC---CC
T ss_conf 220028999988374123489999999999999999999999999987148998777422999999999999626---87
Q ss_pred CEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCC-----CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 16999814897226998716999999998742276520678-----8579999985042101224556678897899999
Q gi|254780450|r 512 QVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKE-----SGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEV 586 (803)
Q Consensus 512 ~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~-----~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V 586 (803)
++.+..+.+.++....+|+.++.|+|.||+.||.+|+.--+ ++.|+++ . ...++.+++.|
T Consensus 580 ~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~--~-------------~~~~g~i~v~V 644 (712)
T COG5000 580 HIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVS--L-------------DDADGRIVVDV 644 (712)
T ss_pred CEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE--E-------------ECCCCEEEEEE
T ss_conf 76997531898625324899999999999871998753101346776438999--8-------------44798499998
Q ss_pred EECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCC-CCEEEEEEECC
Q ss_conf 978866884454202322221013577653038899999851675499996188-94299999437
Q gi|254780450|r 587 EDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVG-KGTIFRIFLPR 651 (803)
Q Consensus 587 ~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g-~Gt~F~i~lP~ 651 (803)
.|||.|.|.+.+.|+||||.|||. +||||||+|||+|+|.|||.|.....|+ .|++..|.||.
T Consensus 645 ~DNGkG~p~e~r~r~~EPYvTtr~--KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 645 IDNGKGFPRENRHRALEPYVTTRE--KGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred ECCCCCCCHHHHHHHCCCCEECCC--CCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCC
T ss_conf 108987996786432367142165--6666239999999996388277247899997679998365
No 31
>PRK10337 sensor protein QseC; Provisional
Probab=100.00 E-value=1.5e-41 Score=310.76 Aligned_cols=210 Identities=20% Similarity=0.282 Sum_probs=167.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEEEEHH
Q ss_conf 44687630342566415899999999998507998478888999999988887643004542120058----43585346
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM----RLTVLNLT 493 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~----~~~~~~l~ 493 (803)
+...+|.+++||||||||++|.+.++++.......+...+.+..|.+..+|+..||++||.+||.+++ .++.+++.
T Consensus 232 ~~~r~F~adaAHELRTPLt~i~~~~e~~~~~~~~~~~~~~~l~~i~~~~~rl~~lv~~LL~Lar~d~~~~~~~~~~v~l~ 311 (446)
T PRK10337 232 VRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLE 311 (446)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECHH
T ss_conf 99999999788875168999999999984279998999999999999999999999999998775446565678175299
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 78999999998750356816999814897226998716999999998742276520678857999998504210122455
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~ 573 (803)
+++.++...+.+.. ...++++.++.+...+.+.+|+..++|++.||+.|| .++.|+||.|+|+...
T Consensus 312 ~l~~~~v~~~~~~a-~~~~i~l~~~~~~~~~~~~~d~~ll~~~l~NLl~NA--ikytp~g~~I~v~~~~----------- 377 (446)
T PRK10337 312 DLLQSAVMDIYHTA-QQAKIDVRLTLNAHGIKRTGQPLLLSLLVRNLLDNA--VRYSPQGSVVDVTLNA----------- 377 (446)
T ss_pred HHHHHHHHHHHHHH-HHCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEEC-----------
T ss_conf 99999999999999-975977999628877067168999999999999999--9748999769999980-----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 667889789999997886688445420232222101-3577653038899999851675499996188942999994
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK-KVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk-~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
..++|+|+|+|||+++++|||||||... +...|+||||+||+.|+++|||+|+++|.++.|+||+|++
T Consensus 378 --------~~l~V~D~G~GIp~e~~~~iFeRFyR~~~~~~~GsGLGLaIV~~I~~~hgG~i~l~~~~~GG~~~~vt~ 446 (446)
T PRK10337 378 --------RNFTVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVSFGNAEEGGFEAKVSW 446 (446)
T ss_pred --------CEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEC
T ss_conf --------779999769999999998742797069999999826749999999998199899997898927999969
No 32
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=100.00 E-value=7.4e-41 Score=305.89 Aligned_cols=209 Identities=21% Similarity=0.265 Sum_probs=158.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCEEEEEH-
Q ss_conf 4468763034256641589999999999850799847888899999998888764300454212005----84358534-
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQT----MRLTVLNL- 492 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~----~~~~~~~l- 492 (803)
+...+|++++||||||||++|.|+++++..... .+ ...+.+..+|+..+|+++|.++|.+. ++.+.+++
T Consensus 141 ~~qr~Fia~~SHELRTPLt~I~~~lEll~~~~~-~~-----~~~~~~~i~rl~~li~~LL~Lar~~~~~~~~~~~~~~ll 214 (355)
T PRK10755 141 DNERLFTADVAHELRTPLAGVRLHLELLAKTHH-ID-----VAPLIARLDQMMHSVSQLLQLARAGQSFSSGNYQTVKLL 214 (355)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 999999997577740389999999999737575-31-----999999999999999999999858886434544213259
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 67899999999875035681699981489722699871699999999874227652067885799999850421012245
Q gi|254780450|r 493 TEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFN 572 (803)
Q Consensus 493 ~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~ 572 (803)
.+++..+...+.....+ .+..+.+..+.....|.+|+.+++|++.||+.|| ..+.++||.|+|++..
T Consensus 215 ~~li~~~~~~l~~~~~~-~~~~l~~~~~~~~~~v~~D~~lL~~vl~NLi~NA--ikys~~g~~I~I~l~~---------- 281 (355)
T PRK10755 215 EDVILPSYDELSTMLEQ-RQQTLLLPESAADITVQGDATLLRLLLRNLVENA--HRYSPEGSNITIKLQE---------- 281 (355)
T ss_pred HHHHHHHHHHHHHHHHH-CCCEEEEECCCCCEEEEECHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEEE----------
T ss_conf 99999999999999997-5995999658877189968999999999999989--9748999769999997----------
Q ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECC-CCCEEEEEEECC
Q ss_conf 5667889789999997886688445420232222101357765303889999985167549999618-894299999437
Q gi|254780450|r 573 YSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEV-GKGTIFRIFLPR 651 (803)
Q Consensus 573 ~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~-g~Gt~F~i~lP~ 651 (803)
++ .+.++|+|+|+|||++.+++||+|||+..+...|+||||+|||.||+.|||+|+++|++ |.||+|+|.||.
T Consensus 282 -----~~-~~~i~V~D~G~GI~~e~~~~iFerFyR~d~~~gGsGLGLaIvk~Iv~~HgG~I~l~s~~~ggGt~~~v~LPk 355 (355)
T PRK10755 282 -----DG-GAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLKK 355 (355)
T ss_pred -----CC-CEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEECC
T ss_conf -----79-889999987999897999885588613899999875899999999999199899998798987899999479
No 33
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=100.00 E-value=5.5e-40 Score=299.75 Aligned_cols=202 Identities=23% Similarity=0.375 Sum_probs=160.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEHHHHHHH
Q ss_conf 68763034256641589999999999850799847888899999998888764300454212005-84358534678999
Q gi|254780450|r 420 VGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQT-MRLTVLNLTEVIGN 498 (803)
Q Consensus 420 ~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~-~~~~~~~l~~~i~~ 498 (803)
..+|+|++||||||||+.|.+++++|.. .+. .....|.+..+++..+|+++|+|+|.+. ...+.+++++++.+
T Consensus 231 r~~~la~vSHeLRTPLT~irl~~e~l~~----~~~--~~~~~i~~~i~~m~~li~~~L~~~r~~~~~~~~~~dl~~l~~~ 304 (437)
T PRK09467 231 RALLMAGVSHDLRTPLTRIRLATEMMSE----EDG--YLAESINKDIEECNAIIEQFIDYLRTDQEMPMEMADLNALLGE 304 (437)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCC----CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 9999975344432789999999874675----318--9999999999999999999999986215566751159999999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99999875035681699981489722699871699999999874227652067885799999850421012245566788
Q gi|254780450|r 499 LRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPT 578 (803)
Q Consensus 499 ~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~ 578 (803)
+..... .....+++.+ +...+.|.+|+.+++|++.||+.| |+||+ +|.|.|++.. .
T Consensus 305 ~~~~~~---~~~~~i~~~~--~~~~~~v~~d~~~l~r~l~NLi~N---A~ky~-~~~i~V~~~~---------------~ 360 (437)
T PRK09467 305 VIAAES---GYEREIETAL--YPGPIEVPMNPIAIKRALANLVVN---AARYG-NGWIKVSSGT---------------E 360 (437)
T ss_pred HHHHHH---CCCCEEEEEC--CCCCEEEEECHHHHHHHHHHHHHH---HHHCC-CCEEEEEEEE---------------E
T ss_conf 999875---5498389962--887648985799999999999998---87607-9839999998---------------6
Q ss_pred CCEEEEEEEECCCCCCHHHHHHCCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 9789999997886688445420232222101--357765303889999985167549999618894299999437
Q gi|254780450|r 579 KDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK--KVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 579 ~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk--~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
++++.|+|.|+|+|||++.+++||+|||+.. +.++|+||||+|||+||+.|||+|+++|.++.|++|+|.||.
T Consensus 361 ~~~~~i~V~D~GpGI~~e~l~~if~pF~R~d~sR~~~GsGLGLaIv~~Iv~~HgG~i~l~~~~~gGl~~~i~lPl 435 (437)
T PRK09467 361 GNRAWFQVEDNGPGIPEEQIKHLFQPFTRGDSARGSSGTGLGLAIVKRIVDQHQGKVELGNREEGGLSARAWLPL 435 (437)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf 899999999759999989998761685218889999977288999999999869989999779994599999715
No 34
>PRK10815 sensor protein PhoQ; Provisional
Probab=100.00 E-value=1.5e-38 Score=289.67 Aligned_cols=213 Identities=18% Similarity=0.227 Sum_probs=162.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----EEEEEHH
Q ss_conf 446876303425664158999999999985079984788889999999888876430045421200584----3585346
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMR----LTVLNLT 493 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~----~~~~~l~ 493 (803)
+...+|++++||||||||++|.++++.+... ....++.. ..+.+..+|+..+|+++|++++.++.. .+.+++.
T Consensus 264 ~rqr~F~adaSHELRTPLa~l~~~le~L~~~-~~~~~~~~--~~~le~i~Rl~~li~~lL~~a~~~~~~~~~~~e~~~l~ 340 (484)
T PRK10815 264 DKYRTTLTDLTHSLKTPLAVLQSTLRSLRTE-KMSVSDAE--PVMLEQISRISQQIGYYLHRASMRGEGTLLSRELHPVA 340 (484)
T ss_pred HHHHHHHHCCCHHHCCHHHHHHHHHHHHHCC-CCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 9999998544364345699999999997469-98878999--99999999999999999999870389863025556699
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 78999999998750356816999814897226998716999999998742276520678857999998504210122455
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~ 573 (803)
.++.++...+.+... ...+.+.++.++++ .+.+|+..+.|++.||+.| |+|++.. .|.|+++.
T Consensus 341 ~ll~~l~~~l~~~~~-~k~i~l~~~~~~~~-~~~gd~~~l~~~l~NLldN---Aikys~~-~v~I~~~~----------- 403 (484)
T PRK10815 341 PLLDNLTSALNKVYQ-RKGVNISLDISPEI-SFVGEQNDFMEVMGNVLDN---ACKYCLE-FVEISARQ----------- 403 (484)
T ss_pred HHHHHHHHHHHHHHH-HCCCEEEEECCCCE-EEECCHHHHHHHHHHHHHH---HHHHCCC-CEEEEEEE-----------
T ss_conf 999999999999999-64977999648760-7955789999999999999---9972888-67999999-----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 66788978999999788668844542023222210135776530388999998516754999961889429999943757
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYV 653 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~ 653 (803)
.++.+.|.|+|+|+|||++.+++||+||+.......|+|||||||+.||+.|||+|+++|.|+.|++|+|.+|+..
T Consensus 404 ----~~~~~~I~V~D~GpGIp~e~~~~IFeRF~R~d~~r~GsGLGLaIvk~Iv~~hgG~I~l~~s~~gG~~f~I~F~~~~ 479 (484)
T PRK10815 404 ----TDEHLHIVVEDDGPGIPESKRELIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVASESPLGGARMEVIFGRQH 479 (484)
T ss_pred ----ECCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCC
T ss_conf ----6999999999739999989998624688779999998576799999999988998999956999248999973877
Q ss_pred C
Q ss_conf 6
Q gi|254780450|r 654 Q 654 (803)
Q Consensus 654 ~ 654 (803)
.
T Consensus 480 ~ 480 (484)
T PRK10815 480 S 480 (484)
T ss_pred C
T ss_conf 8
No 35
>PRK13560 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-37 Score=282.27 Aligned_cols=385 Identities=12% Similarity=0.087 Sum_probs=270.8
Q ss_pred HHHHHHHHH-HHHHHHHHCCCEEE--EECCCCCE--EEEEHHHHHHCCCCHHHHC---CCCHHHHCCCCCHHHH----HH
Q ss_conf 998621189-99999852498099--99599938--9810668867099956731---5611000278761678----99
Q gi|254780450|r 19 EMTIKPKIP-LETIFMDSEPEGIL--ITNERGHI--IYANNAYNALTNAVWNKRT---KSLESLLSRNQEASEA----LY 86 (803)
Q Consensus 19 ~~~lr~~~~-~~r~lld~~~d~i~--v~D~~G~i--~~~N~a~~~l~G~~~~~~~---~~~~~~~~~~~~~~~~----~~ 86 (803)
+...+...+ .-|.+.+++|++++ ..|++|++ .|+..+...++-..+.+.+ +....+.. ++..+. .+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 136 (807)
T PRK13560 59 EAEAQDCREQCERNLKANIPGGMFLFALDGDGTFSFPSLLDANGELAAIAKHDLMADKGLLAMLIG--GDDGDFFFANPF 136 (807)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHCHHHHHHCHHHHCCCHHHHHHEEC--CCCCCEECCCHH
T ss_conf 778899999999878727987079999758874043567652336886180433263325653115--466670123467
Q ss_pred HHHHHHHCCCC-CCEEEEEEECCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999832432-32038986010000489867999999999982378806999999978338899999999999999999
Q gi|254780450|r 87 RLINSLRLKSE-GSEEFRLMQSLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDY 165 (803)
Q Consensus 87 ~l~~~~~~~~~-~~~e~~~~~~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l~~~~~~~~~~ 165 (803)
|....+...+. ... +........|..+|+.--.++-... .+...+-.-..|||++|++|+++.+++..++.+
T Consensus 137 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~DITERKraE~rl~~ql~flq~L 209 (807)
T PRK13560 137 RSAETIAMALQSDDW-----QEEEGHFRCGDGRFIDCCLRFERHA--HADDQVDGFAEDITERKRAEERIDEALHFLQQL 209 (807)
T ss_pred HHHHHHHHHCCCCCH-----HHHHCCCCCCCCEEEEECCCHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 679999875278865-----8751666669950566305421089--734555567787677778999999999999999
Q ss_pred HHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHH-HHHHCCCCEEEEEEEEEEEECC
Q ss_conf 852596199992999689764679864299967804563218880882048999999-8620026714888999980489
Q gi|254780450|r 166 LDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAI-RTEPSHQKITTLDLDLRRIDNG 244 (803)
Q Consensus 166 le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~g 244 (803)
+|+.|+.+|..|.+|++++||++|+.++||+.+++++. +..++.+.+....+... .......+...+|..+.. .+|
T Consensus 210 lDnipdpvF~kD~~G~ylgcN~afe~~~G~~re~i~G~--ti~Dl~p~e~ad~y~~~d~~~l~~~~~~~~E~~v~~-~DG 286 (807)
T PRK13560 210 LDNIADPAFWKDEDAKVFGCNDAACLACGFRREEIIGM--SIHDFAPAQPADDYQEADAAKFDADGSQIIEAEFQN-KDG 286 (807)
T ss_pred HHCCCCCEEEECCCCCEEEECHHHHHHCCCCHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEC-CCC
T ss_conf 85488746997799518962099998809999995686--101278155689998750886418875575520377-998
Q ss_pred EEEE--EEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEE-CCCCCCCC
Q ss_conf 7999--99955676538885547999998607899999999999999999983467509998502069983-15544444
Q gi|254780450|r 245 HGIP--VKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRT-NAHFLKLF 321 (803)
Q Consensus 245 ~~~~--v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~-N~a~~~l~ 321 (803)
..+| +.+...+..+.+|...++++++.|||+||++|++|+++|++|+.++|++|.+||.+|++|+++++ |++..+|+
T Consensus 287 ~~~~~~v~~nka~~~d~~g~~~GlvGv~~DITeRK~aEe~LresEer~R~i~E~a~~gI~~~D~~g~i~~~~n~aae~m~ 366 (807)
T PRK13560 287 RTRPVDVIFNHAEFDDKENHCAGLVGAITDISGRRAAERELLEKEDMLRAIIEAAPIAAIGLDADGNICFVNNNAAERML 366 (807)
T ss_pred CEEEEEEEEEEEEECCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCHHHHHHH
T ss_conf 57579999862233387886656888876156778899999998999999987366534786267615761261678762
Q ss_pred CCCCHHHHCCCCHHHH---------------CCCCCCCCH--HHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEEC
Q ss_conf 5488466179866661---------------011112202--46666555411233454048873885068999987304
Q gi|254780450|r 322 PNCTEGDGTSNDIFSI---------------VHKNEKRKI--IAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLD 384 (803)
Q Consensus 322 ~g~~~~~~~g~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~ 384 (803)
|++..++.+.+++.+ .+|+.++.. ...+..+..+...+...+....+++|..+++...+.+.
T Consensus 367 -G~s~eE~lg~~lw~~~pe~~~e~~~~~~~~~~pdgr~~~~~~c~~a~~~r~g~~~~g~E~~~~RkDGt~~~~~~~~~pL 445 (807)
T PRK13560 367 -GWSAAEVMGKPLPGMDPELNEEFWCGDFQEWYPDGRPMAFDACPMAKTIKGGKIFDGQEVLIEREDDGPADCSAYAEPL 445 (807)
T ss_pred -CCCHHHHCCCCCCCCCHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEECCEEE
T ss_conf -6876886077433568344133313406551666563431012366776137877886379990699657788613022
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 56677613899999850232112210123444
Q gi|254780450|r 385 RSTEAPEEQAILYTVEITEQKALEARMAQTQK 416 (803)
Q Consensus 385 ~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~ 416 (803)
++.+|...+++++..||||||+.|++|.+++.
T Consensus 446 ~D~dG~~~gal~i~~DITERKqAEeaLr~sn~ 477 (807)
T PRK13560 446 HDADGNIIGAIALLVDITERKQVEEQLLLANL 477 (807)
T ss_pred ECCCCCEEEEEEHHHCCHHHHHHHHHHHHHHH
T ss_conf 56788853311001124277889999999888
No 36
>TIGR01386 cztS_silS_copS heavy metal sensor kinase; InterPro: IPR006290 Members of this family contain a sensor histidine kinase domain (IPR003661 from INTERPRO) and a domain found in bacterial signal proteins (IPR003660 from INTERPRO). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. ; GO: 0000155 two-component sensor activity, 0016775 phosphotransferase activity nitrogenous group as acceptor, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=100.00 E-value=7.6e-39 Score=291.71 Aligned_cols=212 Identities=28% Similarity=0.440 Sum_probs=173.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCE----EEEEH
Q ss_conf 446876303425664158999999999985079984788889-9999998888764300454212005843----58534
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADL-MEIKHNANRAAILVRQLLAFSRKQTMRL----TVLNL 492 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l-~~i~~~~~r~~~li~~lLd~sr~~~~~~----~~~~l 492 (803)
+-+++|-|.+|||||||||..++.+|..+.+.+.. +.|+.+ ..=.+.-+|+..||+|+|=++|-+.++. ..+|+
T Consensus 259 ~rLs~FSaDlAHElRTPltNL~~~tQVaLS~~R~~-~eY~e~l~snlEEl~RL~rMv~DMLFLAraD~~~~~~~~~~ldL 337 (483)
T TIGR01386 259 QRLSQFSADLAHELRTPLTNLLGQTQVALSRPRSG-EEYREVLESNLEELERLSRMVEDMLFLARADNGRLALEREELDL 337 (483)
T ss_pred HHHHHHCHHHHHHHHCCHHHHHHHHHEEECCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99973171456664012544566500200568898-89999998618999999999989998998523456777875127
Q ss_pred HHHHH-HHHHHHHHHHCCCCC--EEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
Q ss_conf 67899-999999875035681--699981489722699871699999999874227652067885799999850421012
Q gi|254780450|r 493 TEVIG-NLRMMIQKLISEPPQ--VKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIH 569 (803)
Q Consensus 493 ~~~i~-~~~~~~~~~~~~~~~--i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~ 569 (803)
.+-+. .+...++++.++ .. +.+.+.-. +..|.||+..++++|.|||+|| ..+.|+||.|+|++++
T Consensus 338 ~ae~~l~~~~~fE~lAee-~~Piv~l~v~G~--P~~~~gD~~lfrRA~sNLLsNA--~rhtp~g~~I~v~~~~------- 405 (483)
T TIGR01386 338 AAELALKVAEYFEPLAEE-RGPIVSLRVEGE--PAEVRGDALLFRRALSNLLSNA--LRHTPAGSTIDVRVER------- 405 (483)
T ss_pred HHHHHHHHHHHHHCCCCC-CCCEEEEEEECC--CCEEECCHHHHHHHHHHHHHHH--HHHCCCCCEEEEEEEE-------
T ss_conf 888878888774202767-886689998324--2056024788899999999999--8608998858999961-------
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC-----CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEE
Q ss_conf 24556678897899999978866884454202322221-----0135776530388999998516754999961889429
Q gi|254780450|r 570 TFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT-----TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTI 644 (803)
Q Consensus 570 ~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t-----tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~ 644 (803)
..+++.+.|+++|.||||++++||||+||. +.+.++||||||||||+|++.|||++.++|.+++=|+
T Consensus 406 --------~~d~~~~~v~N~G~~Ip~e~L~rLFdRFYR~D~aR~~G~~~g~GLGLAIV~SI~~~HGG~~~aeS~~~~~t~ 477 (483)
T TIGR01386 406 --------RADEVRVSVENTGDGIPPEHLSRLFDRFYRVDPARSNGSQEGTGLGLAIVRSIMEAHGGRAEAESEADGKTR 477 (483)
T ss_pred --------CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEE
T ss_conf --------477568998358799985235655530026763332766456760489999999823986899864892489
Q ss_pred EEEEEC
Q ss_conf 999943
Q gi|254780450|r 645 FRIFLP 650 (803)
Q Consensus 645 F~i~lP 650 (803)
|++.+|
T Consensus 478 F~l~fp 483 (483)
T TIGR01386 478 FKLRFP 483 (483)
T ss_pred EEEECC
T ss_conf 876339
No 37
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase; InterPro: IPR014265 Proteins in this entry are putative periplasmic sensor signal transduction histidine kinases. They all contain a GAF domain that is present in phytochromes and cGMP-specific phosphodiesterases, and which has been experimentally proven to be involved in protein:protein interactions. They also contain a C-terminal histidine kinase domain, which is composed of a dimerisation sub-domain and an ATP/ADP-binding phosphotransfer, or catalytic, sub-domain. The proteins in this entry are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014264 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=100.00 E-value=1e-35 Score=269.59 Aligned_cols=219 Identities=27% Similarity=0.453 Sum_probs=174.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 221012344444468763034256641589999999999850799847888--899999998888764300454212005
Q gi|254780450|r 407 LEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFA--DLMEIKHNANRAAILVRQLLAFSRKQT 484 (803)
Q Consensus 407 ~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~--~l~~i~~~~~r~~~li~~lLd~sr~~~ 484 (803)
+-++|+++++.++.+++-+=|=|||+|...-...+..- .++|+ .+|+++ -+++|..+.+||..++.+|..=.-. .
T Consensus 473 a~e~L~~arqF~~FnR~SaFvVHDLKNLvaQLSL~l~N-A~~Hk-~NPeFq~DmL~Tv~~~v~RM~~ll~qLr~~~~p-~ 549 (696)
T TIGR02916 473 ASEALAEARQFEAFNRMSAFVVHDLKNLVAQLSLLLRN-AERHK-DNPEFQDDMLETVESAVNRMKKLLAQLREKGLP-E 549 (696)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHH-HHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-C
T ss_conf 99999988888751880342110258999999999998-87417-896689999998999999999999997306897-4
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC--CEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 84358534678999999998750356816999814897--2269987169999999987422765206788579999985
Q gi|254780450|r 485 MRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERD--LWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRN 562 (803)
Q Consensus 485 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~ 562 (803)
.+...+|+.++++.+..--+ ....++++.+. +.+ + .|.+|+.||++|+-||+-||.|| +++.|+|.|++.+
T Consensus 550 ~~~~~~~l~~L~~~~~~~k~---~q~p~~e~~~~-~~~~rl-~~~a~~erl~rV~gHL~QNAlEA--T~~~G~V~~~~~~ 622 (696)
T TIGR02916 550 EEKKTVDLVDLLRRVIASKR---AQQPRPEVSIE-DTDFRL-SVRADRERLERVLGHLVQNALEA--TPEEGRVKIRVER 622 (696)
T ss_pred HHHHEEHHHHHHHHHHHHHH---HCCCCEEEEEC-CCCEEE-EEEECHHHHHHHHHHHHHHHHHC--CCCCCEEEEEEEE
T ss_conf 05641038999999999986---31894489971-754178-88752888999999999988860--4999628999874
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH-HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 04210122455667889789999997886688445-42023222210135776530388999998516754999961889
Q gi|254780450|r 563 IPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDI-MEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGK 641 (803)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~-~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~ 641 (803)
. +|+.++|+|.|||+||++++ ++|+|.||-|||+. .|.|+|.+=||++|+.+||+|.|+|+||+
T Consensus 623 ~--------------~~~~a~i~i~D~G~GM~~~FiR~rLF~PF~tTK~~-aGMGIG~YE~~~yv~e~GG~i~V~S~pG~ 687 (696)
T TIGR02916 623 E--------------CGGAAVIEIEDSGCGMSEAFIRERLFKPFDTTKGN-AGMGIGVYECRQYVEELGGRIEVESTPGK 687 (696)
T ss_pred C--------------CCCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 1--------------88822799986578998589984078997544566-78720189999999983890588863588
Q ss_pred CEEEEEEEC
Q ss_conf 429999943
Q gi|254780450|r 642 GTIFRIFLP 650 (803)
Q Consensus 642 Gt~F~i~lP 650 (803)
||+||+.||
T Consensus 688 Gt~ftl~LP 696 (696)
T TIGR02916 688 GTIFTLVLP 696 (696)
T ss_pred CEEEEEECC
T ss_conf 548887449
No 38
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-35 Score=269.49 Aligned_cols=214 Identities=25% Similarity=0.336 Sum_probs=173.1
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEEHHHH
Q ss_conf 68763034256641589999999999850--79984788889999999888876430045421200584--358534678
Q gi|254780450|r 420 VGTLAGGIAHDFNNVLTAILLSSDHLLLQ--SRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMR--LTVLNLTEV 495 (803)
Q Consensus 420 ~~~~~a~isHelr~pL~~I~g~~~ll~~~--~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~--~~~~~l~~~ 495 (803)
+..|...+|||+++||+.|.+|+++|.++ ....++..+++..+.+...++.+||+|++.||++.... ..+.++.++
T Consensus 524 l~~f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~~~l~~td~~~v 603 (750)
T COG4251 524 LRAFAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTEAPLQPTDVQKV 603 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 99999986104667999999999766634366657588999999999999999999977423120554577777526789
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEEEECCCCCCCCCCC
Q ss_conf 99999999875035681699981489722699871699999999874227652067885--7999998504210122455
Q gi|254780450|r 496 IGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESG--SLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 496 i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G--~v~i~~~~~~~~~~~~~~~ 573 (803)
+.++...+.+.+.+ ..+++.+. + +|.|.+|+.++.||+.||+.| |+||...+ .|.|+..+
T Consensus 604 v~~vl~~l~~ri~d-tgaei~i~--~-lp~v~~d~~~l~qv~~NLi~N---aik~~~~e~~~i~I~~~r----------- 665 (750)
T COG4251 604 VDKVLLELSQRIAD-TGAEIRIA--P-LPVVAADATQLGQVFQNLIAN---AIKFGGPENPDIEISAER----------- 665 (750)
T ss_pred HHHHHHHCCCCCCC-CCCEEEEC--C-CCEEECCHHHHHHHHHHHHHH---HEECCCCCCCCEEEEEEC-----------
T ss_conf 99999734531125-65247862--5-644640888999999998765---521078889815885332-----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC--CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 6678897899999978866884454202322221--01357765303889999985167549999618894299999437
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT--TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t--tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
.++-+.|+|+|+|+||++++.+|||.+|.. ++....|||+||+|||.|++.|+|+|||||++|+|+||.++||.
T Consensus 666 ----~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp~ 741 (750)
T COG4251 666 ----QEDEWTFSVRDNGIGIDPAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLPV 741 (750)
T ss_pred ----CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEC
T ss_conf ----5873079854787776989998889988703756551477733899999999848458886047874168998405
Q ss_pred CCCC
Q ss_conf 5766
Q gi|254780450|r 652 YVQE 655 (803)
Q Consensus 652 ~~~~ 655 (803)
...+
T Consensus 742 ~~~e 745 (750)
T COG4251 742 GGEE 745 (750)
T ss_pred CCCC
T ss_conf 8867
No 39
>PRK09776 putative sensor protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=255.01 Aligned_cols=266 Identities=12% Similarity=0.124 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHH
Q ss_conf 38899999999999999999852596199992999689764679864299967804563218880882048999999862
Q gi|254780450|r 146 TSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTE 225 (803)
Q Consensus 146 T~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (803)
...++.++.+.++++++++++|++++|++..+.+|+++++|+++|+++||+.+|+. .++|.+++||||...-.....+
T Consensus 290 ~~~r~~~~~l~~SE~rfR~~~e~saiGmAlV~~dGr~l~VN~alc~mlGYs~~ELl--~ltf~diThPdDl~~dl~~~~~ 367 (1116)
T PRK09776 290 YAFRAERKHISESETRFRNAMEYSAIGMALVGTEGQWLQVNKALCQFLGYSQEELR--GLTFQQLTWPEDLNKDLQQVEK 367 (1116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHHCCCHHHHH--HCCHHHHCCCCCHHHHHHHHHH
T ss_conf 99998888877679999999874666469986898189816999988498999985--2989881696217778999999
Q ss_pred HCCCCEE--EEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0026714--88899998048979999995567653888554799999860789999999999999999998346750999
Q gi|254780450|r 226 PSHQKIT--TLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIAS 303 (803)
Q Consensus 226 ~~~~~~~--~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~ 303 (803)
...|+.. ..|.++.++ +|+.+|+.+..+++++.+|++.++++++.|||++|++|++++++++|++.+.++.+.|+|.
T Consensus 368 LlaGei~~y~lEKRyirk-DG~~vW~~ltvSlvRd~~G~p~~fI~~v~DIterK~aE~~lr~l~erl~la~ea~~iGiwe 446 (1116)
T PRK09776 368 LLSGEINSYSMEKRYYNR-DGDVVWALLAVSLVRDTDGTPLYFIAQIEDINELKRTEQVNERLMERITLANEAGGIGIWE 446 (1116)
T ss_pred HHCCCCCCCCCEEEEECC-CCCEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 976996645411246736-9979999989999976999844899999733377999999999999999998624766355
Q ss_pred EEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEE
Q ss_conf 85020699831554444454884661798666610111122024666655541123345404887388506899998730
Q gi|254780450|r 304 IDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATL 383 (803)
Q Consensus 304 ~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~ 383 (803)
+|.....++||..+.++++...........|.+.+||+|+..+...+..+..+.. ....|+++...+|.+.++......
T Consensus 447 ~d~~~~~i~~~~r~~~l~g~~~~~~~~~~~w~~~ihPdD~~~v~~~~~~~l~~~~-~~d~E~Rl~~~dG~~r~i~~~a~~ 525 (1116)
T PRK09776 447 WDLKPNIISWDKRMFELYEIPPHIKPNWQVWYACLHPEDRQRVEKEIRDALQGRS-PFKLEFRIVVPDGEIRHIRALANR 525 (1116)
T ss_pred EECCCCCEECCHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHCCC-CCCCEEEEECCCCCEEEEEEEEEE
T ss_conf 2056650211378999848882226688999872391568999999999971588-756046788479978999862148
Q ss_pred CCCCCCCCEEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 45667761389999985023211221012344
Q gi|254780450|r 384 DRSTEAPEEQAILYTVEITEQKALEARMAQTQ 415 (803)
Q Consensus 384 ~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~ 415 (803)
.++.+|...+.+++..||||+|++|++|.+++
T Consensus 526 ~~d~~G~~~r~~G~~~DITe~K~~eeaL~e~~ 557 (1116)
T PRK09776 526 VLNKDGEVERLLGINMDMTEVRQLNEALFEEK 557 (1116)
T ss_pred EECCCCCEEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 98689988988731323207789999999999
No 40
>PRK11359 cAMP phosphodiesterase; Provisional
Probab=100.00 E-value=7.4e-29 Score=221.32 Aligned_cols=251 Identities=13% Similarity=0.041 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 98621189999998524980999959993898106688670999567315611000278761678999999983243232
Q gi|254780450|r 20 MTIKPKIPLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGS 99 (803)
Q Consensus 20 ~~lr~~~~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 99 (803)
-+..+++.++|+++|.+|+||+++|.+|+|+++|++|++|+||++++++|.....+...+. ...........+.+....
T Consensus 5 ~~~~~~~~~fr~~lE~s~~GIviiD~~GrIv~~N~aa~~l~GYs~eEllG~~~~~L~p~d~-~~~~~~~l~~~~~~g~~~ 83 (799)
T PRK11359 5 DADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDL-RPAHPEYIRHNREGGKAR 83 (799)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCCCC-CHHHHHHHHHHHHCCCCC
T ss_conf 0134547999999961885499996999099871899998792999985998899278533-312399999877426554
Q ss_pred EEEEEEECCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 03898601000048986799999999998237880699999997833889999999999999999985259619999299
Q gi|254780450|r 100 EEFRLMQSLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQ 179 (803)
Q Consensus 100 ~e~~~~~~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~ 179 (803)
. .....+....++||...|+.++.++. ..+ +...++..++|||++++.+ ++.+.+..++++++.+++.+|.+
T Consensus 84 ~-~g~~~E~~~~RKDGs~~~velsvs~i--~~~-g~i~~l~ivrDITee~a~~----e~~r~l~~~ld~~~~~I~i~D~~ 155 (799)
T PRK11359 84 V-EGMSRELQLEKKDGSKIWTRFALSKV--SAE-GKVYYLALVRDASVEMAQK----EQTRQLIIAVDHLDRPVIVLDPE 155 (799)
T ss_pred C-CCCEEEEEEECCCCCEEEEEEEEEEE--CCC-CCEEEEEEEEECCHHHHHH----HHHHHHHHHHHCCCCEEEEECCC
T ss_conf 4-56404899985888899999999776--479-9289999999768999999----99999999986268729999189
Q ss_pred CCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHC-CCHHHH-HHHHHHHHHCCCCEEEEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf 96897646798642999678045632188808-820489-9999986200267148889999804897999999556765
Q gi|254780450|r 180 GKILYINATLAEWIGIDLTTFTSKSISIGDIT-AGEGLA-LIQAIRTEPSHQKITTLDLDLRRIDNGHGIPVKIVHHILA 257 (803)
Q Consensus 180 g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~ 257 (803)
|+++++|+++++++||+.+|+.+... .+++ +|+... .................++...+ ++|..+|+.....++.
T Consensus 156 g~i~~vN~a~~el~Gy~~eEl~G~~~--~~ll~~pe~~~~~~~~~~~~l~~~~~~~~E~~~~~-kdG~~~wv~~s~~pi~ 232 (799)
T PRK11359 156 RHIVQCNRAFTEMFGYCISEASGMQP--DTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLT-RTGEKIWIKASISPVY 232 (799)
T ss_pred CCEEEECHHHHHHHCCCHHHHCCCCH--HHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC-CCCCEEEEEEEEEEEE
T ss_conf 87899877899985998789748988--99834878847999999999864897305899982-6997999998988998
Q ss_pred CCCCCEEEEEEEEEEHHHHHHHHHH
Q ss_conf 3888554799999860789999999
Q gi|254780450|r 258 SCDGKPGESRTVVVSRKNCDSGDPS 282 (803)
Q Consensus 258 ~~~G~~~~~~~~~~Dit~~k~~e~~ 282 (803)
+.+|....++++..|||++|+.++.
T Consensus 233 d~~g~~~~~v~i~~DITErr~~~~l 257 (799)
T PRK11359 233 DVLAHLQNLVMTFSDITEERQIRQL 257 (799)
T ss_pred CCCCCEEEEEEEEEECCHHHHHHHH
T ss_conf 4889888999999731588899999
No 41
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-30 Score=230.78 Aligned_cols=315 Identities=24% Similarity=0.314 Sum_probs=215.8
Q ss_pred HHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCH-HHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 99999834675099985020699831554444454884-66179866661011112202466665554112334540488
Q gi|254780450|r 289 RFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTE-GDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPH 367 (803)
Q Consensus 289 rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 367 (803)
...++++++..||..+|..|.++.+|.++++|++...+ .+.+|+++.+++.|+-+ +...+. .+++ ....+.
T Consensus 216 er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig~~i~~v~~p~~~--l~~vl~---~~~~-~~~~e~-- 287 (537)
T COG3290 216 ERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIGRSIVEVLPPDSD--LPEVLE---TGKP-QHDEEI-- 287 (537)
T ss_pred HHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC--CHHHHH---CCCC-CCCHHH--
T ss_conf 99999987636289987898576112889998465676756446610376156367--577875---0776-311344--
Q ss_pred ECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73885068999987304566776138999998502321122101234444446876303425664158999999999985
Q gi|254780450|r 368 PQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLL 447 (803)
Q Consensus 368 ~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~ 447 (803)
.-.++++ ..+.+|.. .++...++|.+++|-||-+++-++|.+...+ .+-+...+||+.|-|+.|.|..++-
T Consensus 288 -~~ng~~~--i~nr~pI~-~~~~~~GaI~tFRdktei~~L~eqLt~vr~y---a~aLRaq~HEfmNkLhtI~GLlql~-- 358 (537)
T COG3290 288 -RINGRLL--VANRVPIR-SGGQIVGAIITFRDKTEIKKLTEQLTGVRQY---AEALRAQSHEFMNKLHTILGLLQLG-- 358 (537)
T ss_pred -HCCCEEE--EEEECCEE-ECCEEEEEEEEEECHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_conf -1477599--99852378-8897768999876377899999999989999---9999885288888899998788505--
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH-HHHHHHHHHCCCCCEEEEEECCCCCEE-
Q ss_conf 079984788889999999888876430045421200584358534678999-999998750356816999814897226-
Q gi|254780450|r 448 QSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGN-LRMMIQKLISEPPQVKLTVDYERDLWG- 525 (803)
Q Consensus 448 ~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~- 525 (803)
.-|...+++.++.+.-+. +++.+. +..+. .++.- +..-..++. ..++++.++....++.
T Consensus 359 ---~yd~a~~~I~~~~~~qq~---~~~~l~-----~~i~~------~~lAg~LlgK~~rAr--Elgv~l~Id~~S~l~~~ 419 (537)
T COG3290 359 ---EYDDALDYIQQESEEQQE---LIDSLS-----EKIKD------PVLAGFLLGKISRAR--ELGVSLIIDPNSQLPQL 419 (537)
T ss_pred ---CHHHHHHHHHHHHHHHHH---HHHHHH-----HHCCC------HHHHHHHHHHHHHHH--HCCCEEEECCCCCCCCC
T ss_conf ---378999999998764045---689999-----85120------888999886899999--72965997579867889
Q ss_pred -EEECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCC
Q ss_conf -99871699999999874227652067-8857999998504210122455667889789999997886688445420232
Q gi|254780450|r 526 -VKTDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFE 603 (803)
Q Consensus 526 -v~~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFe 603 (803)
-.-++.-+--++-||+.||.+|.-.+ +..+|.+... ..++++.|+|+||||||||+.+++||+
T Consensus 420 p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~---------------~~~~~lvieV~D~G~GI~~~~~~~iFe 484 (537)
T COG3290 420 PSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLS---------------DRGDELVIEVADTGPGIPPEVRDKIFE 484 (537)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE---------------ECCCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 87667678999999988778888515578967999998---------------369879999957999989688777873
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 2221013577653038899999851675499996188942999994375766
Q gi|254780450|r 604 PFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQE 655 (803)
Q Consensus 604 pF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~ 655 (803)
.-|+||.. .|.|.||++||++|+.+||.|+++|+.+.||+|+|++|..+..
T Consensus 485 ~G~Stk~~-~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~~~ 535 (537)
T COG3290 485 KGVSTKNT-GGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVKER 535 (537)
T ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 48414677-8876128899999987496699950789814999988887665
No 42
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-30 Score=233.11 Aligned_cols=214 Identities=37% Similarity=0.474 Sum_probs=166.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CEEEEEHH
Q ss_conf 4687630342566415899999999998507998478888999999988887643004542120058-----43585346
Q gi|254780450|r 419 AVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM-----RLTVLNLT 493 (803)
Q Consensus 419 a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~-----~~~~~~l~ 493 (803)
....|++.++||+|||++.+.++++.+... ..+.....+..+...+.++..+++++++++|.+.. .....++.
T Consensus 114 ~~~~~~~~~~hel~~pl~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (336)
T COG0642 114 AKREFLANISHELRTPLTAIRGLLELLLEG--LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGTKLKLLLELVDLA 191 (336)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 999999999888589799999999997414--652599999999999999999999999999764457442234645599
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 78999999998750356816999814897226998716999999998742276520678857999998504210122455
Q gi|254780450|r 494 EVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNY 573 (803)
Q Consensus 494 ~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~ 573 (803)
.++.++...+..... ...+.+....+ ....+.+|+.++.||+.||++||.++.. ++.|.|.+...
T Consensus 192 ~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~v~~~~~~l~~vl~nLi~NAi~~~~---~~~i~i~~~~~---------- 256 (336)
T COG0642 192 ELLEEVVRLLAPLAQ-EKGIELAVDLP-ELPYVLGDPERLRQVLVNLLSNAIKYTP---GGEITISVRQD---------- 256 (336)
T ss_pred HHHHHHHHHHHHHHH-HCCEEEEEECC-CCEEEEECHHHHHHHHHHHHHHHHHHCC---CCEEEEEEEEC----------
T ss_conf 999999999998766-34848998237-6607860788999999999998998668---98599999963----------
Q ss_pred CCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 66788978999999788668844542023222210135776530388999998516754999961889429999943757
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYV 653 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~ 653 (803)
++++.++|.|+|+||+++.++++|+||+|++..+.||||||+|||++++.|||.|+++|.+|.||+|+|.||...
T Consensus 257 -----~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~~g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~ 331 (336)
T COG0642 257 -----DEQVTISVEDTGPGIPEEELERIFEPFFRTDKSRSGTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAP 331 (336)
T ss_pred -----CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCC
T ss_conf -----877999998078997988999881886347999898863299999999987998999507999779999984776
Q ss_pred C
Q ss_conf 6
Q gi|254780450|r 654 Q 654 (803)
Q Consensus 654 ~ 654 (803)
.
T Consensus 332 ~ 332 (336)
T COG0642 332 A 332 (336)
T ss_pred C
T ss_conf 5
No 43
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-29 Score=226.71 Aligned_cols=231 Identities=29% Similarity=0.375 Sum_probs=185.3
Q ss_pred ECCCCCCCCCC-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 50232112210-------123444444687630342566415899999999--998507998478888999999988887
Q gi|254780450|r 400 EITEQKALEAR-------MAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSD--HLLLQSRSSDASFADLMEIKHNANRAA 470 (803)
Q Consensus 400 DITerk~~E~~-------L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~--ll~~~~~~~~~~~~~l~~i~~~~~r~~ 470 (803)
.+.||++.|.. |-|+-|+.++|+-.-.+||||++|||+...|.= -+.....++.....++.+|..-.+|+.
T Consensus 424 EveeR~e~ea~L~~~Q~ELiQaAKlAvVGqTmTslaHEinQPLnAmsaYLFsA~~A~e~~~s~qa~~~L~kie~L~eR~~ 503 (673)
T COG4192 424 EVEERQEAEAHLKKTQGELIQAAKLAVVGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMG 503 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998778999999899987788888988557568899999987888851745889989998877999999
Q ss_pred HHHHHHHHHHHHCCCC--EEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHH
Q ss_conf 6430045421200584--35853467899999999875035681699981489722699871699999999874227652
Q gi|254780450|r 471 ILVRQLLAFSRKQTMR--LTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAI 548 (803)
Q Consensus 471 ~li~~lLd~sr~~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~ 548 (803)
.+|+.+..|+|+.+++ ..++++++++.....+++.. .+...+.+.. +.|.++|.||..+++|||.||+.||.||+
T Consensus 504 ~Iv~sLRqF~Rk~s~~~~lqpV~L~~~v~~AweLl~~k-hk~rQ~~Li~--ptD~~~V~gd~v~ieQVlvNl~~NaldA~ 580 (673)
T COG4192 504 KIVNSLRQFARKNSSDESLQPVRLNSVVEQAWELLQTK-HKRRQIKLIN--PTDDLMVMGDAVSIEQVLVNLIVNALDAS 580 (673)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCCCCC--CCCCCEECCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999975257778764110999999999999854-2000244237--76530000015649999999999888664
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 06788579999985042101224556678897899999978866884454202322221013577653038899999851
Q gi|254780450|r 549 MLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQ 628 (803)
Q Consensus 549 ~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~ 628 (803)
.... ..|.+.+- ...++.+++.|.|+|+|.|-+..+++|.||.|+|.. |.|||||||.+|++.
T Consensus 581 ~h~~-p~i~~~~~--------------~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v--gLGlGLSIsqSlmeq 643 (673)
T COG4192 581 THFA-PWIKLIAL--------------GTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV--GLGLGLSISQSLMEQ 643 (673)
T ss_pred CCCC-CEEEEEEE--------------CCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCC--CCCCCHHHHHHHHHH
T ss_conf 1578-62799864--------------276421589984489998456778860776643100--555325678999998
Q ss_pred CCCEEEEEECCCCCEEEEEEEC
Q ss_conf 6754999961889429999943
Q gi|254780450|r 629 SGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 629 ~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
|.|++.+-|+.-+|+++.+.+-
T Consensus 644 mqG~l~lAStLt~nA~ViL~f~ 665 (673)
T COG4192 644 MQGRLALASTLTKNAMVILEFQ 665 (673)
T ss_pred HCCCCHHHHHCCCCCEEEEEEE
T ss_conf 4274448655135748999984
No 44
>PRK11359 cAMP phosphodiesterase; Provisional
Probab=99.96 E-value=1.8e-26 Score=204.57 Aligned_cols=244 Identities=10% Similarity=0.063 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHH---HHHCCC--
Q ss_conf 999999999998525961999929996897646798642999678045632188808820489999998---620026--
Q gi|254780450|r 155 FFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIR---TEPSHQ-- 229 (803)
Q Consensus 155 l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-- 229 (803)
...++..+++++|++|+||+++|.+|+|+++|+++++++||+.+|++++. +..+++++......... ...+..
T Consensus 7 ~~~~~~~fr~~lE~s~~GIviiD~~GrIv~~N~aa~~l~GYs~eEllG~~--~~~L~p~d~~~~~~~~l~~~~~~g~~~~ 84 (799)
T PRK11359 7 DNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNN--IDMLIPRDLRPAHPEYIRHNREGGKARV 84 (799)
T ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 34547999999961885499996999099871899998792999985998--8992785333123999998774265544
Q ss_pred CEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEE
Q ss_conf 71488899998048979999995567653888554799999860789999999999999999998346750999850206
Q gi|254780450|r 230 KITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGR 309 (803)
Q Consensus 230 ~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~ 309 (803)
.....++.+.+ ++|..+|+.+..+++ +.+|.. .+++++.|||+++ +++++++++..++++++.+|+++|.+|+
T Consensus 85 ~g~~~E~~~~R-KDGs~~~velsvs~i-~~~g~i-~~l~ivrDITee~----a~~e~~r~l~~~ld~~~~~I~i~D~~g~ 157 (799)
T PRK11359 85 EGMSRELQLEK-KDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEM----AQKEQTRQLIIAVDHLDRPVIVLDPERH 157 (799)
T ss_pred CCCEEEEEEEC-CCCCEEEEEEEEEEE-CCCCCE-EEEEEEEECCHHH----HHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 56404899985-888899999999776-479928-9999999768999----9999999999998626872999918987
Q ss_pred EEEECCCCCCCCCCCCHHHHCCCCHHHHCC-CCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCC
Q ss_conf 998315544444548846617986666101-1112202466665554112334540488738850689999873045667
Q gi|254780450|r 310 ILRTNAHFLKLFPNCTEGDGTSNDIFSIVH-KNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTE 388 (803)
Q Consensus 310 i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~ 388 (803)
++++|++|++++ |++.+++.|+++.++++ |+........+.....+. .....+......+|+++|+..+..+.++..
T Consensus 158 i~~vN~a~~el~-Gy~~eEl~G~~~~~ll~~pe~~~~~~~~~~~~l~~~-~~~~~E~~~~~kdG~~~wv~~s~~pi~d~~ 235 (799)
T PRK11359 158 IVQCNRAFTEMF-GYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKT-ARDQDEFLLLTRTGEKIWIKASISPVYDVL 235 (799)
T ss_pred EEEECHHHHHHH-CCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCC-CCCEEEEEEECCCCCEEEEEEEEEEEECCC
T ss_conf 899877899985-998789748988998348788479999999998648-973058999826997999998988998488
Q ss_pred CCCEEEEEEEEECCCCCCCCC
Q ss_conf 761389999985023211221
Q gi|254780450|r 389 APEEQAILYTVEITEQKALEA 409 (803)
Q Consensus 389 ~~~~~~i~~~~DITerk~~E~ 409 (803)
+...+.+++..||||+|++++
T Consensus 236 g~~~~~v~i~~DITErr~~~~ 256 (799)
T PRK11359 236 AHLQNLVMTFSDITEERQIRQ 256 (799)
T ss_pred CCEEEEEEEEEECCHHHHHHH
T ss_conf 988899999973158889999
No 45
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.94 E-value=2.7e-22 Score=175.12 Aligned_cols=385 Identities=17% Similarity=0.199 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEC-EEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999999999999983467509998502-06998315544444548846617986666101111220246666555411
Q gi|254780450|r 279 GDPSGTIANMRFNRFFNNIPMAIASIDKK-GRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQK 357 (803)
Q Consensus 279 ~e~~l~~se~rl~~i~e~~p~~I~~~d~~-g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (803)
...+|+..+...+.++.+.|.|+.+.|-+ .+.+..|.-+..+++..+-... ..-+.+..
T Consensus 334 m~~eL~~~~~l~~eIIs~lP~GlLVYdF~sN~~i~SNkIAdhLLPhl~LqkI--------------------~~MA~qH~ 393 (881)
T PRK10618 334 MSGELRILRAINEEIVSLLPLGLLVYDFSSNRTVISNKIADHLLPHLNLQKI--------------------TTMAEQHQ 393 (881)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHCCCCCHHHH--------------------HHHHHHHC
T ss_conf 8889999988688898548750699974689577302678865576678999--------------------99999737
Q ss_pred CCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECC--CCCCCCCCHHHHHH-HHHHHHHHCCCHHHHHHH
Q ss_conf 233454048873885068999987304566776138999998502--32112210123444-444687630342566415
Q gi|254780450|r 358 SDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEIT--EQKALEARMAQTQK-LNAVGTLAGGIAHDFNNV 434 (803)
Q Consensus 358 ~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DIT--erk~~E~~L~qa~~-~~a~~~~~a~isHelr~p 434 (803)
|.+. .. ....-..++.+-+.. -..-..++....|-. -.|+++...+.-+| .++-..|+.+|.+|++.|
T Consensus 394 GvIQ---~t-InNevYEIr~~rSq~-----~p~T~LFii~DqDkEvLvnKkLq~AqreYeKN~qaRk~~l~Ni~~el~~P 464 (881)
T PRK10618 394 GVIQ---AT-INNELYEIRMFRSQV-----APRTQLFIIRDQDREVLVNKKLQQAQREYEKNQQARRAFLQNIGDELKEP 464 (881)
T ss_pred CEEE---EE-ECCEEEEEEEEECCC-----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8689---98-836067888542257-----87537999975758999889999999999866999999999999998778
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEEEEHHHHHHHHHHH-HHHHHCC
Q ss_conf 899999999998507998478888999999988887643004542120058----43585346789999999-9875035
Q gi|254780450|r 435 LTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM----RLTVLNLTEVIGNLRMM-IQKLISE 509 (803)
Q Consensus 435 L~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~----~~~~~~l~~~i~~~~~~-~~~~~~~ 509 (803)
+..+.-.+..| +... +. +.+.++...+..+.++|++|-=+-+.|+. ..+.|++.++++++..- +-....|
T Consensus 465 l~~l~~~~~~l--~~~~-~~--~~l~~L~~qs~~i~~lidnI~Lln~LEsq~W~~~~~~Fsl~~Lid~~l~e~Lp~i~~K 539 (881)
T PRK10618 465 VQSLAELAAQL--NAPE-SQ--QLLKQLAEQADVLVRLIDNIQLANMLENDEWKSEQTLFSLQDLIDEVVPEVLPAIKRK 539 (881)
T ss_pred HHHHHHHHHHH--HCCC-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999986--2524-46--7999999999999999988999988860567656771049999999999876898742
Q ss_pred CCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 68169998148972269987169999999987422765206788579999985042101224556678897899999978
Q gi|254780450|r 510 PPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDT 589 (803)
Q Consensus 510 ~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~ 589 (803)
|..+-.......+- ...||+.-|++|+.=|+.- |+-.|.=|+|++.+..-+.. .+.+.|.|.||
T Consensus 540 GL~L~~hn~l~~~~-~~~gD~~aLrkil~lLl~Y---aitTT~~GKItl~v~~~~~~------------~~~l~i~i~DT 603 (881)
T PRK10618 540 GLQLLIHNHLKAND-MRRGDRDALRKILLLLLQY---AVTTTQYGKITLEVDQDESS------------EERLTFRILDT 603 (881)
T ss_pred CCEEEEECCCCHHH-HCCCCHHHHHHHHHHHHHH---HHHCCCCCEEEEEEECCCCC------------CCEEEEEEECC
T ss_conf 70333234798899-7047899999999999988---81114452599998258777------------86389999547
Q ss_pred CCCCCHHHHHHCCCCCC---CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 86688445420232222---101357765303889999985167549999618894299999437576644333333222
Q gi|254780450|r 590 GIGMSPDIMEKIFEPFF---TTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQESHYSHDI 666 (803)
Q Consensus 590 G~GI~~~~~~~iFepF~---ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~~~~~~~~~~~~ 666 (803)
|.|++...++.+=-||. +..++++++||-.++|+++++.|||.+.+.|.++-||.++|.||....+..++.
T Consensus 604 G~Gls~~El~Nl~~PFl~~t~~Dry~~~SGlTf~LC~qLc~KlgG~l~I~Sk~~iGT~Y~i~lp~~~~~~~~~~------ 677 (881)
T PRK10618 604 GEGVSIHEIDNLHFPFLNQTQGDRYGKASGLTFWLCNQLCRKLGGHLNIKSREDLGTRYSVHLKMLPADPEVEE------ 677 (881)
T ss_pred CCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECCCCCCCCCCC------
T ss_conf 88878888855379776831221113788729999999999848967884156776647998426765555552------
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 235444453334787569997698899999999999889899998998999899986599954899858
Q gi|254780450|r 667 AIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDV 735 (803)
Q Consensus 667 ~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~ 735 (803)
.+.-+ .+-.||+-=-++.+|.++.++|+.||.++...... ..+..||+.|+|-
T Consensus 678 ------~e~LL--dgV~vlLdIts~eir~IV~~~L~~~GA~~i~~de~--------~~~~e~Dl~lTDn 730 (881)
T PRK10618 678 ------EERLL--DDVTVLLDITSEEIRNIVTRQLENWGATCITPDER--------LISQEYDIFLTDN 730 (881)
T ss_pred ------HHHHH--CCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCC--------CCCCCCEEEEECC
T ss_conf ------02333--27178886386889999999987429758715756--------7786420787258
No 46
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=99.94 E-value=7.7e-26 Score=200.05 Aligned_cols=118 Identities=27% Similarity=0.438 Sum_probs=107.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCE
Q ss_conf 756999769889999999999988989999899899989998659995489985878898889999999986--899829
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT--YPSLKF 758 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~--~~~~~i 758 (803)
+.+|||||||++++++++-.|++.||+|++|.||.||+.+++++ .|||||+|+++||.||+|++|+||+. ..++||
T Consensus 2 ~~~iLvVEDE~AirEl~~~~L~~~gy~v~~A~d~~~A~~~~~E~--~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPI 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINER--LPDLILLDWMLPGTSGIELARRLRREPETRAIPI 79 (226)
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCE
T ss_conf 87256770826899999998416894699807979999998607--9988996147899756999987347633148881
Q ss_pred EEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 999067858998767605798075079799999999999851
Q gi|254780450|r 759 IFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 759 i~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
||+||-+++.++=...+.|.++|++||||+.+|.+.|+.+|=
T Consensus 80 IMLTARGeE~Drv~GLetGADDYvtKPFSp~EL~ARikAVLR 121 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYVTKPFSPRELLARIKAVLR 121 (226)
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHH
T ss_conf 774055560001131136887503678865889999999983
No 47
>PRK10693 response regulator of RpoS; Provisional
Probab=99.93 E-value=1.9e-24 Score=190.25 Aligned_cols=118 Identities=27% Similarity=0.332 Sum_probs=106.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 87569997698899999999999889899998998999899986599954899858788988899999999868998299
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
.+.+|||||||+.+|.+++.+|+..||+|..|.||.+|++++++. .||+||+|++||+|||++++++||+..+++|||
T Consensus 6 ~gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~--~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVI 83 (337)
T PRK10693 6 VGKQILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVL 83 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 899899994999999999999997899999989999999998658--999999968999999899999999858996499
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHH
Q ss_conf 990678589987676057980750797-9999999999985
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPF-SLKQLATSVHELL 799 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~-~~~~L~~~i~~~L 799 (803)
++||+.+.+........|..+||.||| +..+|.+++...|
T Consensus 84 vlTa~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l 124 (337)
T PRK10693 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACL 124 (337)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 99868999999999974995899789699999999999875
No 48
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.93 E-value=2.8e-24 Score=189.10 Aligned_cols=117 Identities=33% Similarity=0.548 Sum_probs=107.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 56999769889999999999988989999899899989998659995489985878898889999999986899829999
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
.+|||||||+.++..++.+|+..||+|.+|.||.+|++++... +||+||+|++||+|||++++++||+..|++|||++
T Consensus 5 ~rILIVDDd~~ir~~l~~~L~~~G~~V~~a~~~~~Al~~l~~~--~~DlvllDi~mP~~~Glell~~ir~~~p~~pvIvl 82 (457)
T PRK11361 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILM 82 (457)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 9289983999999999999997799899989999999998668--98999982879999999999999820989938999
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 067858998767605798075079799999999999851
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
|||+.....-.....|.++||.|||+.++|..+|+++|.
T Consensus 83 Ta~~~~~~av~A~k~GA~Dyl~KPf~~~~L~~~v~rAl~ 121 (457)
T PRK11361 83 TAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred ECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 689998999999975966325699999999999999999
No 49
>PRK13559 hypothetical protein; Provisional
Probab=99.93 E-value=1.3e-21 Score=170.31 Aligned_cols=312 Identities=16% Similarity=0.177 Sum_probs=217.9
Q ss_pred HHHHHHHHHHCCCCEEEEEEE---CEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 999999998346750999850---20699831554444454884661798666610111122024666655541123345
Q gi|254780450|r 286 ANMRFNRFFNNIPMAIASIDK---KGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISP 362 (803)
Q Consensus 286 se~rl~~i~e~~p~~I~~~d~---~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (803)
+..-|...++.++.+|++.|+ |.-|+|+|++|+++. ||+.++++|+++.-+-+|+..+.....+..++... ....
T Consensus 43 ~~~~~~~a~~~~r~a~~itd~~~~d~PIiy~N~aF~~lT-GYs~~EviGrncrfLqGp~t~~~~v~~ir~ai~~~-~~~~ 120 (363)
T PRK13559 43 SGRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLT-GYAAEEVVGRNCRFLQGAGTDPAAVAKIRAAIAAE-RVVV 120 (363)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCCCCCEEEECHHHHHHH-CCCHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHCC-CCEE
T ss_conf 314799999747743899689999998899887999763-98979984999241089999989999999999839-9469
Q ss_pred CCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 40488738850689999873045667761389999985023211221012344444468763034256641589999999
Q gi|254780450|r 363 IDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSS 442 (803)
Q Consensus 363 ~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~ 442 (803)
+++...+++|..+|..+...|.++.+|....++++..|||++|+.+...++ ...|+..|.|-.+|.|+.|.+.+
T Consensus 121 ~el~nyrKDGs~fwn~l~isPV~D~~G~v~~fig~q~DvTd~~~~~a~e~~------~~~LlrEl~HRVKN~LavV~Si~ 194 (363)
T PRK13559 121 VELLNYRKDGSPFWNALHLGPIYDEDGKLLYFFGSQWDVTDIRAVRALEAH------ERRLAREVDHRSKNVFAVVDSIV 194 (363)
T ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998269982477689888798999799999999851554204558999------99999998887661999999999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 999850799847888899999998888764300-4542120058435853467899999999875035681699981489
Q gi|254780450|r 443 DHLLLQSRSSDASFADLMEIKHNANRAAILVRQ-LLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYER 521 (803)
Q Consensus 443 ~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~-lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (803)
.+- .+. .+. .+....+..-.. ++..+.+ |+.- ...+.+++.+++..+ +.++...+.++.+ +.+
T Consensus 195 rlq-~R~--~~~-~~~~~~l~~RI~-ALa~aH~~Ll~~-----~~~~~v~l~~ll~~~---l~~~~~~~~ri~~--~gp- 258 (363)
T PRK13559 195 RLT-GRA--DDA-SLYAAAIQERVQ-ALARAHETLLDE-----RGWETVEVEELIRAQ---VAPYAPRGTRVAF--EGP- 258 (363)
T ss_pred HHH-CCC--CCH-HHHHHHHHHHHH-HHHHHHHHHHCC-----CCCCCEEHHHHHHHH---HHHCCCCCCEEEE--ECC-
T ss_conf 965-347--984-999999999999-999999998657-----776623299999999---9850788866999--889-
Q ss_pred CCEEEEEC-HHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Q ss_conf 72269987-1699999999874227-652067885799999850421012245566788978999999788668844542
Q gi|254780450|r 522 DLWGVKTD-LSQFEQVLVNLCVNAH-HAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIME 599 (803)
Q Consensus 522 ~~~~v~~D-~~~l~qvl~NLl~NA~-~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~ 599 (803)
++ .+..+ ...|--|+..|++||. ++.....+|+|.|++... .+++.+.|.+.|+|.|.++.
T Consensus 259 ~v-~l~~~~A~~L~LilhELaTNA~KyGals~~~G~V~V~w~~~-------------~~~~~l~l~W~E~Ggp~v~~--- 321 (363)
T PRK13559 259 GI-RLGAASVQPLGLVLHELAVNAIKHGALSADAGRISISWRPS-------------REGGGLVLDWQEQGGPTPPK--- 321 (363)
T ss_pred CE-EECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC-------------CCCCEEEEEEECCCCCCCCC---
T ss_conf 75-68688877899999999870887356678997799999981-------------78987999997789999989---
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHH-HCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 023222210135776530388999998-5167549999618894299999437
Q gi|254780450|r 600 KIFEPFFTTKKVGEGTGLGLSVVYGII-RQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 600 ~iFepF~ttk~~g~GtGLGL~i~~~iv-~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
. .++|+|.-++...+ ..+||++..+=.+ .|..++|.+|.
T Consensus 322 -----------p-~~~GFGs~LI~~~v~~qL~G~v~~~~~~-~Gl~~~i~~Pl 361 (363)
T PRK13559 322 -----------L-QKRGFGTVIISAMVESQLKGQIEKDWAD-DGLLARIEIPV 361 (363)
T ss_pred -----------C-CCCCCHHHHHHHHHHHHCCCEEEEEECC-CEEEEEEEEEC
T ss_conf -----------9-9998569999999898759879999879-90899999966
No 50
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.92 E-value=1.2e-24 Score=191.63 Aligned_cols=106 Identities=47% Similarity=0.670 Sum_probs=93.0
Q ss_pred ECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCC
Q ss_conf 871699999999874227652067-8857999998504210122455667889789999997886688445420232222
Q gi|254780450|r 528 TDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF 606 (803)
Q Consensus 528 ~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ 606 (803)
+|+.+|.|++.||++|| +|++ .++.|+|++.. ..+++.|+|+|+|+|||++.++++|+|||
T Consensus 1 ~d~~~l~~il~Nli~NA---ik~~~~~~~I~i~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~ 62 (111)
T smart00387 1 GDPDRLRQVLSNLLDNA---IKYTPEGGRITVTLER---------------DGDHLEITVEDNGPGIPPEDLEKIFEPFF 62 (111)
T ss_pred CCHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE---------------CCCEEEEEEEECCCCCCHHHHHHCCCCCE
T ss_conf 98899999999999999---9967799789999998---------------39999999998899739899964269947
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 1013---57765303889999985167549999618894299999437
Q gi|254780450|r 607 TTKK---VGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 607 ttk~---~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
+++. ..+|+||||+||+.++++|||+|+++|.+++||+|+++||.
T Consensus 63 ~~~~~~~~~~g~GlGL~i~~~i~~~~~G~i~i~s~~~~Gt~~~i~lP~ 110 (111)
T smart00387 63 RTDGRSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEC
T ss_conf 779999887976648999999999879989999659981899999981
No 51
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.92 E-value=3.6e-24 Score=188.28 Aligned_cols=117 Identities=26% Similarity=0.484 Sum_probs=108.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 56999769889999999999988989999899899989998659995489985878898889999999986899829999
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
.+|||||||+.++..++..|+..||+|.+|.||.+|++++.+. .||+||+|++||+|||+++++++|+.+|++|||++
T Consensus 4 ~kILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~--~~dlvl~Di~mP~~~Gl~ll~~lr~~~~~~pvIvi 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 9799994989999999999987799899989999999998669--99999878999998999999999842989978999
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 067858998767605798075079799999999999851
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
|||+.....-.....|.++||.|||++++|..+|+++|.
T Consensus 82 T~~~~~~~av~A~~~GA~dyL~KP~~~~~L~~~v~ral~ 120 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (469)
T ss_pred ECCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 899998999999855704430088999999999999999
No 52
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.92 E-value=8.7e-24 Score=185.57 Aligned_cols=120 Identities=27% Similarity=0.445 Sum_probs=108.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCC
Q ss_conf 7875699976988999999999998898-9999899899989998659995489985878898889999999986--899
Q gi|254780450|r 679 GNSAIVLLVEDEDSVRRGSKRMLETRGY-TVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT--YPS 755 (803)
Q Consensus 679 ~~~~~iLvvdD~~~~~~~~~~~L~~~g~-~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~--~~~ 755 (803)
.+..+|||||||+.+|.++..+|+.+|| .|.+|.||.+|++.+++. .||+|++|++||+|||++++++||+. .++
T Consensus 3 ~k~lrILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~--~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~ 80 (129)
T PRK10610 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAMSA 80 (129)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 99989999979899999999999986997899989999999999858--9999998189999989999999985777789
Q ss_pred CCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 829999067858998767605798075079799999999999851
Q gi|254780450|r 756 LKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 756 ~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
+|||++||++.........+.|..+||.|||+..+|..+|+++|.
T Consensus 81 ~Pii~~T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~ 125 (129)
T PRK10610 81 LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 968999886899999999986998899898999999999999997
No 53
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=99.92 E-value=4e-24 Score=187.95 Aligned_cols=111 Identities=33% Similarity=0.588 Sum_probs=104.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 99976988999999999998898999989989998999865999548998587889888999999998689982999906
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISG 763 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~ 763 (803)
|||||||+.+|..++.+|+.+||+|.+|.||.+|++.++++ .||+|++|++||+|||++++++||+..|++|||++||
T Consensus 1 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~--~~dlvi~Di~mP~~dG~el~~~ir~~~~~~piI~~T~ 78 (111)
T pfam00072 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEK--RPDLILLDIRMPGMDGLELLRRIRRRPPTTPVIVLTA 78 (111)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 09998989999999999998899999989999999999847--9989999536899501579999973599980999975
Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 785899876760579807507979999999999
Q gi|254780450|r 764 YAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVH 796 (803)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~ 796 (803)
++.........+.|..+||.|||+.++|.++|+
T Consensus 79 ~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ir 111 (111)
T pfam00072 79 HGDEEDAVEALKAGANDFLSKPFDPEELVAALR 111 (111)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 089999999997798779949999899998529
No 54
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.92 E-value=9.9e-24 Score=185.20 Aligned_cols=116 Identities=27% Similarity=0.360 Sum_probs=103.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEE
Q ss_conf 56999769889999999999988989999899899989998659995489985878898889999999986--8998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT--YPSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~--~~~~~ii 759 (803)
.+||||||++.++.+++..|+..||+|..|.||.|||+++.+. +||+||+|++||+|||++++++||+. ..++|||
T Consensus 3 ~rILiVdD~~~~~~~l~~~L~~~~y~v~~a~~G~eAL~~~~~~--~PDLILlDi~MP~mdG~ev~r~Lk~~~~~~~iPVI 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICERE--QPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVV 80 (457)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 7199994989999999999987899999989999999999718--99989992877999999999999659888998499
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 9906785899876760579807507979999999999985
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELL 799 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L 799 (803)
++||+.+..........|..+||.|||+...|...++.++
T Consensus 81 vlTa~~d~e~~~~al~~GA~DYL~KP~~~~~L~~ri~~l~ 120 (457)
T PRK09581 81 MVTALDDPSDRVRGLEAGADDFLTKPINDVALFARVKSLT 120 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 9978999999999986488789989999899999999999
No 55
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.92 E-value=1.2e-23 Score=184.63 Aligned_cols=119 Identities=27% Similarity=0.443 Sum_probs=108.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 87569997698899999999999889899998998999899986599954899858788988899999999868998299
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
...+|||||||+.++..++.+|+..||+|.+|.||.+|++.+.+. .||+||+|+.||+|||+++++++|+..|++|||
T Consensus 4 ~~~~ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~--~~DlvllD~~mp~~~Gl~lL~~l~~~~p~~pvI 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 998599983989999999999997799899989999999998648--999999889999998999999998429898289
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99067858998767605798075079799999999999851
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
++|||+.....-.....|.++||.|||+.++|..+|+++|.
T Consensus 82 viT~~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al~ 122 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122 (441)
T ss_pred EEECCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 99699998999999982851234078889999999999999
No 56
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.92 E-value=1.1e-23 Score=184.90 Aligned_cols=113 Identities=35% Similarity=0.619 Sum_probs=105.2
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99769889999999999988989999899899989998659995489985878898889999999986899829999067
Q gi|254780450|r 685 LLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGY 764 (803)
Q Consensus 685 LvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~ 764 (803)
|||||++.+|..++.+|+.+||+|.+|.||.+|++.++.+ +||+||+|++||+|||++++++||+..|++|||++|||
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~--~~dlvi~D~~mP~~~G~el~~~ir~~~~~~pvI~lT~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECC
T ss_conf 9892729999999999998899999989999999998757--99999977999898726999999985899959999787
Q ss_pred CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 85899876760579807507979999999999985
Q gi|254780450|r 765 AEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELL 799 (803)
Q Consensus 765 ~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L 799 (803)
+.........+.|..+||.|||+.++|.++|+++|
T Consensus 79 ~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 89999999997689789969899999999999869
No 57
>pfam02518 HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Probab=99.91 E-value=5.6e-24 Score=186.91 Aligned_cols=106 Identities=44% Similarity=0.650 Sum_probs=93.3
Q ss_pred ECHHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCC
Q ss_conf 871699999999874227652067-8857999998504210122455667889789999997886688445420232222
Q gi|254780450|r 528 TDLSQFEQVLVNLCVNAHHAIMLK-ESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF 606 (803)
Q Consensus 528 ~D~~~l~qvl~NLl~NA~~A~~~~-~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ 606 (803)
+|+.+|.||+.||++|| ++++ .+|+|+|++.. ..+++.|+|+|+|+|||++.++++|+|||
T Consensus 1 ~d~~~l~~i~~nll~NA---ik~~~~~~~I~i~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~ 62 (111)
T pfam02518 1 GDEDRLRQVLSNLLDNA---IKHAPAGGEIEVTLER---------------DGGRLRITVEDNGIGIPPEDLPKIFEPFF 62 (111)
T ss_pred CCHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE---------------ECCEEEEEEEECCCCCCHHHHHHHCCCCE
T ss_conf 98899999999999999---9977999759999999---------------59999999998999959899988749917
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 1013---57765303889999985167549999618894299999437
Q gi|254780450|r 607 TTKK---VGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 607 ttk~---~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
+++. ..+|+||||++|+.+++.|||+|+++|.+++||+|++.||.
T Consensus 63 ~~~~~~~~~~g~GlGL~i~~~~~~~~~g~i~~~s~~~~Gt~~~i~lp~ 110 (111)
T pfam02518 63 RTDKDSRKVGGTGLGLSIVRKLVELHGGTITVESEPGGGTTFTFTLPL 110 (111)
T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEEE
T ss_conf 779999777977647999999999879989999659983899999970
No 58
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.90 E-value=2.3e-22 Score=175.56 Aligned_cols=117 Identities=30% Similarity=0.442 Sum_probs=105.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 56999769889999999999988989999899899989998659995489985878898889999999986899829999
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
.+||+||||+..+..++..|+..||+|..|.||.+|++.+..+ .||+||+|++||+|||++++++||+..+++|||++
T Consensus 4 ~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvilDi~LP~~~G~~l~~~iR~~~~~~pII~l 81 (229)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLRAFHPALPVIFL 81 (229)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999996999999999999998899999989999999999718--99899973889998768899999970899729998
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 067858998767605798075079799999999999851
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
||+......-...+.|..+||.|||++.+|.+.|+.+|.
T Consensus 82 ta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lr 120 (229)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (229)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 367898999999975998773087428999999999997
No 59
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.90 E-value=2.2e-22 Score=175.66 Aligned_cols=118 Identities=20% Similarity=0.367 Sum_probs=107.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 75699976988999999999998898999989989998999865999548998587889888999999998689982999
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
..+||+||||+..+..++..|+..||+|..|.||.+|++.+... .||+||+|++||+|||++++++||+..+++|||+
T Consensus 5 ~~kILiVEDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~--~~DlvilDi~lp~~dG~~l~~~iR~~~~~~pII~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf 97899990999999999999998899999989999999999758--9989998789988887346777875057877899
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 9067858998767605798075079799999999999851
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
+||+..+...-.....|..+||.|||+..+|.+.|+.+|.
T Consensus 83 LTa~~~~~d~i~~l~~GADDYi~KPf~~~EL~aRI~allr 122 (239)
T PRK09468 83 LTAKGEEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 9466787899999976986885589998999999999986
No 60
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.90 E-value=1.4e-22 Score=177.08 Aligned_cols=116 Identities=26% Similarity=0.365 Sum_probs=106.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+||+||||+..+..++..|+..||+|..|.||.+|++.+... .||+||+|++||+|||++++++||+..+.+|||++|
T Consensus 2 kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~~--~~DlvilDi~lP~~dG~~l~~~iR~~~~~~PII~lt 79 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKGQREPVLILT 79 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEE
T ss_conf 899993899999999999998799999989999999998628--969999979999998563101046527888789980
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 67858998767605798075079799999999999851
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
|+......-.....|..+||.|||++.+|.+.|+.+|.
T Consensus 80 a~~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allr 117 (219)
T PRK10336 80 ARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 68999999999976998886889767999999999961
No 61
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.90 E-value=2e-22 Score=176.02 Aligned_cols=117 Identities=22% Similarity=0.368 Sum_probs=106.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+||+||||+..+..++..|+..||+|..|.||.+|++.+... .||+||+|++||+|||++++++||+..+++|||++|
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~--~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lt 79 (226)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLT 79 (226)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEE
T ss_conf 899993999999999999987899999989999999998518--999999889999998720435677616796099994
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 678589987676057980750797999999999998513
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
|.......-.....|..+||.|||++.+|.+.|+.+|..
T Consensus 80 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr 118 (226)
T PRK09836 80 ALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (226)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 458988999999769968863687679999999999662
No 62
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=99.90 E-value=9.1e-23 Score=178.41 Aligned_cols=118 Identities=27% Similarity=0.440 Sum_probs=106.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 99976988999999999998898999989989998999865999548998587889888999999998689982999906
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISG 763 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~ 763 (803)
|+|||||.++|-++.+.|...||+|....|+..++..+... +.+|+|++|+.|||+||++++.+|++.+|.+|||+|||
T Consensus 1 vwvvDDD~siR~VL~~AL~~~g~~v~~f~~A~~~l~~l~~~-p~pD~~~tD~rMPg~~Gl~LL~~ik~~~P~LPVIvM~A 79 (471)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGIEVRTFDNAASVLRALARE-PQPDLLITDVRMPGEDGLDLLKQIKKRHPKLPVIVMTA 79 (471)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 95776471899999999966695453113189999998447-99987986122688248999999985089997798713
Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 785899876760579807507979999999999985137
Q gi|254780450|r 764 YAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
|++-..+=...+.|.+.||+|||+++++...+.++|++.
T Consensus 80 ~~dl~~Av~a~~~GAfEYLpKPFD~de~v~lv~RA~~~~ 118 (471)
T TIGR01818 80 HSDLDSAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 118 (471)
T ss_pred CHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 067899999973583021769876688999999861030
No 63
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.89 E-value=6.8e-22 Score=172.22 Aligned_cols=117 Identities=20% Similarity=0.324 Sum_probs=104.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCE-EEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 56999769889999999999988-989-9998998999899986599954899858788988899999999868998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETR-GYT-VHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~-g~~-v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
-+|||||||+.++.+++.+|+.. ||. |..|.||.+|+++++.+ .|||||+|++||+|||++++++||+..+++|||
T Consensus 5 i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~~~--~pDLvLLDi~LPd~~Glell~~lr~~~~~~~VI 82 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF--KPGLILLDNYLPDGRGINLLHELVQAHYPGDVV 82 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 869999598999999999997289954999989999999999735--999999828989997999999999648799889
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99067858998767605798075079799999999999851
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
++||+.+..........|.++||.|||+.++|.++|.+..+
T Consensus 83 ~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~ 123 (225)
T PRK10046 83 FTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred EEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf 99689999999999974998310289999999999999999
No 64
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.89 E-value=6.8e-22 Score=172.23 Aligned_cols=119 Identities=33% Similarity=0.519 Sum_probs=108.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 75699976988999999999998898999989989998999865999548998587889888999999998689982999
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
..+|||||||+++|.++...|+..||.|..|.|+.+|++.+.+. .||+|++|+.||+|||.++.+.+++..|++|||+
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 68789992978999999999997697489858999999998628--9998998167899966999999996389998899
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 90678589987676057980750797999999999998513
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
+|||+.-..+-.....+.++||.|||+++.|...++++|.-
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALEL 122 (464)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 82889999999998557033321899999999999999987
No 65
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.89 E-value=5.6e-22 Score=172.85 Aligned_cols=118 Identities=20% Similarity=0.361 Sum_probs=105.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCE
Q ss_conf 756999769889999999999988989999899899989998659995489985878898889999999986--899829
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT--YPSLKF 758 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~--~~~~~i 758 (803)
+.+||+||||+..+..++..|+..||+|..|.||.+|++.+.+. .||+||+|++||+|||++++++||+. .+++||
T Consensus 2 ~~kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~--~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PI 79 (229)
T PRK10161 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPV 79 (229)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCE
T ss_conf 97199995999999999999997799999989999999998528--9989999789988763358788775024689758
Q ss_pred EEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 999067858998767605798075079799999999999851
Q gi|254780450|r 759 IFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 759 i~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
|++||.......-...+.|..+||.|||++.+|.+.|+.+|.
T Consensus 80 I~lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lr 121 (229)
T PRK10161 80 VMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 999556665779999876987652089998999999999971
No 66
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.89 E-value=4.9e-22 Score=173.22 Aligned_cols=119 Identities=27% Similarity=0.451 Sum_probs=109.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 75699976988999999999998898999989989998999865999548998587889888999999998689982999
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
..+||||||++.+|..++.+|+..|++|..+.+|.+|++.+.+. +||+||+|++||+|||++++++||+..|++|||+
T Consensus 3 k~tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~~--~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~viv 80 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIV 80 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 99799984999999999999998899899989999999997657--9799987799999896079999872289986799
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 90678589987676057980750797999999999998513
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
+|+|.+..........|..+||.||++.++|.++|+.++..
T Consensus 81 lT~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~ 121 (202)
T PRK09390 81 MTGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 97457488889999829464455999999999999999971
No 67
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.89 E-value=3e-22 Score=174.70 Aligned_cols=118 Identities=31% Similarity=0.475 Sum_probs=106.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 87569997698899999999999889899998998999899986599954899858788988899999999868998299
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
...+||+||||+..+..++..|+..||+|..|.||.+|++.+.+. .||+||+|++||+|||++++++||+. .++|||
T Consensus 5 ~k~kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~--~~DlviLDi~LP~~dG~~l~~~iR~~-~~~PII 81 (240)
T CHL00148 5 SKEKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQE--QPDLVILDVMMPKLDGYGVCQEIRKE-SDVPII 81 (240)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCCEEEECCCCC-CCCCEE
T ss_conf 998299993989999999999997899999989999999999747--99999997999988866305414037-995489
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99067858998767605798075079799999999999851
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
++||..+....-.....|..+||.|||++.+|.+.|+.+|.
T Consensus 82 ~LTa~~~~~d~v~gl~~GADDYi~KPf~~~EL~aRi~allr 122 (240)
T CHL00148 82 MLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 98167898999999976997895278447999999999986
No 68
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.89 E-value=1e-21 Score=171.06 Aligned_cols=116 Identities=25% Similarity=0.375 Sum_probs=104.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+||+||||+..+..++..|+..||+|..|.||.+|++.+.++ .||+||+|++||+|||++++++||+. +++|||++|
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~--~~DlvilDi~lP~~dG~~l~~~iR~~-~~~pII~lt 78 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLT 78 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEE
T ss_conf 899996989999999999998899999989999999998528--99999984999873689999999856-886489995
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 678589987676057980750797999999999998513
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
|.......-.....|..+||.|||++.+|.+.|+..|..
T Consensus 79 a~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 655657899999839877620897789999999999641
No 69
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.88 E-value=3.6e-22 Score=174.15 Aligned_cols=99 Identities=42% Similarity=0.640 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHCCCC--CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCC--
Q ss_conf 99999998742276520678--85799999850421012245566788978999999788668844542023222210--
Q gi|254780450|r 533 FEQVLVNLCVNAHHAIMLKE--SGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTT-- 608 (803)
Q Consensus 533 l~qvl~NLl~NA~~A~~~~~--~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~tt-- 608 (803)
|+||+.||++|| ++++. .+.|+|.... .++++.|+|+|+|+|||++.++++|+||++.
T Consensus 1 l~~vl~nLl~NA---ik~~~~~~~~I~i~~~~---------------~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 62 (103)
T cd00075 1 LQQVLLNLLSNA---IKHTPEGGGRITISVER---------------DGDHLEIRVEDNGPGIPEEDLERIFERFSDGSR 62 (103)
T ss_pred CHHHHHHHHHHH---HHHCCCCCCEEEEEEEE---------------CCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC
T ss_conf 969999999999---98678999489999998---------------399999999977994088999760697501788
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 13577653038899999851675499996188942999994
Q gi|254780450|r 609 KKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 609 k~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
+...+|+||||++|+.+++.|||+|+++|.+|+||+|+|+|
T Consensus 63 ~~~~~g~GlGL~i~~~i~~~~~G~i~i~s~~~~Gt~~~i~l 103 (103)
T cd00075 63 SRKGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEC
T ss_conf 87789865059999999998899899996599919999989
No 70
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.88 E-value=3e-21 Score=167.67 Aligned_cols=118 Identities=23% Similarity=0.309 Sum_probs=105.3
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 699976988999999999998-898999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLET-RGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~-~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+|||||||+.++++++.+|+. .||+|+ .|+++.+|++++.....+|||||+|+.||+|||+++++.||+..|++|||+
T Consensus 3 rVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~VI~ 82 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVIV 82 (239)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 79999298999999999985189908999989999999999657999858997899999978999999998589981999
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 9067858998767605798075079799999999999851
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
+||+.+....+.....|.++||.|||+.+.|.+++....+
T Consensus 83 ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~ 122 (239)
T PRK10430 83 ISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHH
T ss_conf 9726889999999983950304899999999999999999
No 71
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.88 E-value=3.4e-21 Score=167.32 Aligned_cols=117 Identities=22% Similarity=0.344 Sum_probs=106.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+||+||||+..+..++..|+..||.|..|.+|.+|++.+..+ .||+||+|++||+|||++++++||+..+.+|||++|
T Consensus 2 kILlVEDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~--~~DlvilDi~lp~~~G~~l~~~ir~~~~~~pII~lt 79 (222)
T PRK10643 2 KILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESG--HYSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILT 79 (222)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEE
T ss_conf 799992889999999999997899999989999999999748--998999968889986226899998348998899982
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 678589987676057980750797999999999998513
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
|+......-.....|..+||.|||++.+|.+.|+.+|..
T Consensus 80 ~~~~~~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr 118 (222)
T PRK10643 80 ARDTLEDRIAGLDVGADDYLVKPFALEELHARIRALLRR 118 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 103678899999759977643887689999999999703
No 72
>PRK13435 response regulator; Provisional
Probab=99.88 E-value=3.9e-21 Score=166.88 Aligned_cols=114 Identities=24% Similarity=0.350 Sum_probs=99.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHHHCCCCCEE
Q ss_conf 5699976988999999999998898999-98998999899986599954899858788-988899999999868998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMP-EMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp-~m~G~~~~~~ir~~~~~~~ii 759 (803)
-+|||||||+.++..+..+|+..||+|+ +|.||.||++++++. .||++|+|++|| ||||++++++|+.. +++|||
T Consensus 2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~--~PDlvllDi~LpdG~~G~e~~r~l~~~-~~ipvI 78 (141)
T PRK13435 2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRA--QPDVALVDIRLADGPTGVEVARRLSID-GGVEVI 78 (141)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCCHHHHHHHHHHC-CCCCEE
T ss_conf 78999899899999999999987997999759999999997659--998999788789999899999999875-998389
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 990678589987676057980750797999999999998513
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
++|||++.. .... .+..+||.|||+..+|.++|+++++.
T Consensus 79 ~lTa~~d~~--~~~~-aGA~dyl~KPf~~~eL~~ai~~~~~r 117 (141)
T PRK13435 79 FMTANPERV--GHDF-AGALGVIAKPYSLRQVARALSYVAAR 117 (141)
T ss_pred EEECCHHHH--HHHH-CCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 997779986--0134-59985898999989999999999971
No 73
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.88 E-value=2.8e-21 Score=167.96 Aligned_cols=117 Identities=24% Similarity=0.345 Sum_probs=106.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+||+||||+..+..+...|+..||+|..|.||.+|++.+.++ .||++|+|++||+|||++++++||+..+++|||++|
T Consensus 2 kILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~--~~dlvilD~~lp~~~G~~l~~~ir~~~~~~piI~lt 79 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH--LPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLT 79 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCHHCCCCCCCEEEEE
T ss_conf 899995989999999999997899999989999999999757--998999979998988640012011048987689994
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 678589987676057980750797999999999998513
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
|+......-.....+..+||.|||+.++|...|+.+|..
T Consensus 80 a~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr 118 (223)
T PRK10816 80 ARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 445677899999869988641897778999999999665
No 74
>PRK11173 two-component response regulator; Provisional
Probab=99.87 E-value=5e-21 Score=166.15 Aligned_cols=116 Identities=28% Similarity=0.486 Sum_probs=102.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 56999769889999999999988989999899899989998659995489985878898889999999986899829999
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
.+||+||||+..+..++..|+..||.|..|.||.+|++.+..+ .||+||+|++||++||++++++||+. .++|||++
T Consensus 4 ~~ILiVEDD~~~~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~~--~~DlvilDi~lp~~~G~~l~~~iR~~-~~~piI~l 80 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQ-ANVALMFL 80 (237)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHHHC-CCCCEEEE
T ss_conf 9899995989999999999998899999989999999998638--99899993899988730355566516-88478999
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 067858998767605798075079799999999999851
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
||+..+...-.....|..+||.|||+..+|...++.+|.
T Consensus 81 ta~~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~ 119 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 432577889999976976788789887999999999986
No 75
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.87 E-value=4e-21 Score=166.80 Aligned_cols=116 Identities=34% Similarity=0.594 Sum_probs=105.3
Q ss_pred EEEEECCCHHHHHHHHHHH--HHCCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 6999769889999999999--98898999-98998999899986599954899858788988899999999868998299
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRML--ETRGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L--~~~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
.||+|||++.+|+.++.++ +.+|++|+ +|.||.||++++++. +||+||||+.||+|||+++++.+++..|++.+|
T Consensus 3 kVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~--~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~I 80 (475)
T COG4753 3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQET--QPDIVITDINMPGMDGLDLIKAIKEQSPDTEFI 80 (475)
T ss_pred EEEEECCHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 399966729999999984885636975787514579999998734--997899815788875799999999749985399
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99067858998767605798075079799999999999851
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
++|||.+=..++.....+..+||-||++-.+|.+++.++.+
T Consensus 81 ILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 81 ILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred EEECCCHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHH
T ss_conf 98464205899999861852122076989999999999999
No 76
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.87 E-value=1.9e-21 Score=169.13 Aligned_cols=116 Identities=29% Similarity=0.419 Sum_probs=104.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+||+||||+..+..++..|+..||+|..|.||.+|+..+..+ .||+||+|++||+|||++++++||+. +++|||++|
T Consensus 3 ~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~--~~DlviLDi~lP~~dG~~l~~~iR~~-~~~pII~lt 79 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQW-SAIPVIVLS 79 (225)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCEEEEECC-CCCCEEEEE
T ss_conf 899997989999999999998899999979999999986117--99899980788888876331000127-998789995
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 678589987676057980750797999999999998513
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
|+..+...-.....|..+||.|||++.+|.+.|+.+|..
T Consensus 80 a~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr 118 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 468989999999769876540785459999999999714
No 77
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.87 E-value=2.1e-21 Score=168.79 Aligned_cols=114 Identities=26% Similarity=0.445 Sum_probs=101.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+||+||||+..+..++..|+..||+|..|.||.+|++.+. . .||+||+|++||+|||++++++||+. +++|||++|
T Consensus 3 kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~--~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PII~lt 78 (232)
T PRK10955 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-D--SIDLLLLDVMMPKKNGIDTLKALRQT-HQTPVIMLT 78 (232)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-C--CCCEEEEECCCCCCCCCCCCCEEECC-CCCCEEEEE
T ss_conf 8999969899999999999888999999899999999964-8--98999991899988867230124407-888789980
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 67858998767605798075079799999999999851
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
|...+...-.....|..+||.|||++.+|.+.|+.+|.
T Consensus 79 a~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allr 116 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 55676889999976975763389998999999999976
No 78
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.87 E-value=1.7e-21 Score=169.39 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=102.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+||+||||+.++..++..|+..||+|..|.||.+|++.+.+. .||+||+|++||+|||++++++||+. .++|||++|
T Consensus 3 kILlVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~~--~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PiI~lt 79 (240)
T PRK10701 3 TIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILRE--QPDLVLLDIMLPGKDGMTICRDLRPK-WSGPIVLLT 79 (240)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCCEEEEECCCC-CCCCEEEEE
T ss_conf 899997999999999999988799999989999999998617--99999992899767887876311025-898789994
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 67858998767605798075079799999999999851
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
|...+...-...+.|..+||.|||++.+|.+.|+..|.
T Consensus 80 a~~~~~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~lr 117 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 05757889999976887764179987999999999996
No 79
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.87 E-value=3.9e-21 Score=166.92 Aligned_cols=116 Identities=32% Similarity=0.496 Sum_probs=102.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 75699976988999999999998898999989989998999865999548998587889888999999998689982999
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+.+||+||||+..+..++..|+..||+|..|.||.+|++.+..+ .||+||+|+.||+|||++++++||+. +++|||+
T Consensus 2 ~~kILlVEDD~~l~~~l~~~L~~~g~~V~~~~~~~~a~~~l~~~--~~DlvilDi~lp~~~G~el~~~iR~~-~~~piI~ 78 (224)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSR-STVGIIL 78 (224)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCCCHHHHHHHC-CCCCEEE
T ss_conf 97199991999999999999998799999989999999999608--99999988999988766137676304-7855686
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 906785899876760579807507979999999999985
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELL 799 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L 799 (803)
+||+..+...-.....|..+||.|||+..+|...|+.+|
T Consensus 79 lta~~~~~~~i~al~~GaddYl~KPf~~~eL~ari~all 117 (224)
T PRK10766 79 VTGRTDSIDRIVGLEMGADDYVTKPFELRELLVRVKNLL 117 (224)
T ss_pred ECCCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf 335589899999998494145139998899999999997
No 80
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.87 E-value=8.6e-21 Score=164.47 Aligned_cols=117 Identities=21% Similarity=0.365 Sum_probs=105.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 75699976988999999999998898999989989998999865999548998587889888999999998689982999
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
..+||+||||+..+..++..|+..||.|..|.||.+|++.+..+ .||+||+|++||++||++++++||+. +++|||+
T Consensus 10 ~~kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~--~~DliilDi~lp~~~Gl~l~~~lr~~-~~~piI~ 86 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRF-SDIPIVM 86 (240)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCCCCHHHHHCC-CCCCEEE
T ss_conf 88799992989999999999998899999989999999999737--99899987999888776321122115-7646899
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 9067858998767605798075079799999999999851
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
+||+.++...-...+.|..+||.|||+.++|.+.|+.+|.
T Consensus 87 lta~~~~~~~~~al~~GAddYl~KPf~~~eLlari~~~lr 126 (240)
T PRK10710 87 VTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred ECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 8167888999999986998760077653899999999984
No 81
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.86 E-value=3.3e-20 Score=160.40 Aligned_cols=116 Identities=29% Similarity=0.450 Sum_probs=102.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCCEEEE
Q ss_conf 6999769889999999999988989999899899989998659995489985878898889999999986-899829999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT-YPSLKFIFI 761 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~-~~~~~ii~~ 761 (803)
+||+||||+.++.+++..|+..||+|..|.+|.+|++.+... ||+||+|++||+|||++++++||+. ...+|||++
T Consensus 2 ~ILiveDd~~i~~~l~~~L~~~G~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~L 78 (229)
T COG0745 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVL 78 (229)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC---CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEE
T ss_conf 899991888999999999987597899978989999997269---99999988999856899999998516899988999
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 0678589987676057980750797999999999998513
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
||...+...-...+.|..+|+.|||++.+|.+.|+.+|-.
T Consensus 79 ta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 79 TARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred ECCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf 6687288899999756342334889989999999999673
No 82
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.84 E-value=1.5e-19 Score=155.71 Aligned_cols=115 Identities=23% Similarity=0.349 Sum_probs=100.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+||+||||+..+..++..|+..||+|..|.||.+|++.+... .||+||+|++||++||++++++||+.. ++|+|++|
T Consensus 3 ~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~--~~DlvIlDi~lp~~~Gl~~~~~ir~~~-~~piiilt 79 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSE--TVDVVVVDLNLGREDGLEIVRSLATKS-DVPIIIIS 79 (241)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCCHHHHHHHCCCC-CCCEEEEE
T ss_conf 899996989999999999987799999989999999998659--999999969998766134555640369-97369997
Q ss_pred CC-CHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 67-858998767605798075079799999999999851
Q gi|254780450|r 763 GY-AEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 763 ~~-~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
+. .++...-...+.|..+||.|||+..+|...|+.+|.
T Consensus 80 ~~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lr 118 (241)
T PRK13856 80 GDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 267878999999876998899777677799999999987
No 83
>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=99.84 E-value=2.9e-21 Score=167.78 Aligned_cols=116 Identities=31% Similarity=0.441 Sum_probs=103.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 99976988999999999998898999989989998999865999548998587889888999999998689982999906
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISG 763 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~ 763 (803)
|||||||+-..+.++.=|...||.|..|+||..+|.++.++ .|||||+|+++|||||++.+++||+...+.||+++||
T Consensus 1 iLvvEDeqkT~~YlqqGLsE~GYvvD~~~nG~DGL~lA~~~--~Y~liILDvmLPG~DGW~vl~~LR~~~~~~PVl~LTA 78 (219)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDIASNGRDGLHLAEKD--DYDLIILDVMLPGMDGWQVLKALRRSGKETPVLFLTA 78 (219)
T ss_pred CEEEECCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCC--CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 96763086026765305201234798877686247543688--8308996325889506899999840789873488833
Q ss_pred CCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 78589987676057980750797999999999998513
Q gi|254780450|r 764 YAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
-..-+++=.-.+.|..+||-|||+..+|.+.||..|-.
T Consensus 79 ~D~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~ 116 (219)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRR 116 (219)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 78845435301147865413787760379999987677
No 84
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.83 E-value=4.3e-19 Score=152.52 Aligned_cols=103 Identities=29% Similarity=0.434 Sum_probs=87.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 56999769889999999999988-98999-98998999899986599954899858788988899999999868998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
-+||||||++.+|..++.+|+.. |++|+ +|.||.||+++++++ .+|+|+||++||+|||++++++|++.+| +|||
T Consensus 3 irVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~nG~eAl~~~~~~--~pDvVllDi~MP~mdGie~l~~I~~~~p-~pVi 79 (345)
T PRK00742 3 IRVLVVDDSAFMRRLLSEILNSDPDIEVVGTARDGLEAVEKIKKL--NPDVITLDVEMPVMDGIEALRKIMALRP-TPVV 79 (345)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHCC-CCEE
T ss_conf 269999298899999999997289908999989999999998860--9999998378899987999999997589-8779
Q ss_pred EEECCCHHH--HHHHHHHCCCCEEEECCCC
Q ss_conf 990678589--9876760579807507979
Q gi|254780450|r 760 FISGYAEDA--FSKNLPKDAKFSFLSKPFS 787 (803)
Q Consensus 760 ~~t~~~~~~--~~~~~~~~~~~~~l~KP~~ 787 (803)
++|+...+. ..-...+.|.++|+.||-.
T Consensus 80 mvSs~~~~~~~~~~~Al~~GA~D~i~KP~~ 109 (345)
T PRK00742 80 MVSSLTERGAEITLEALELGAVDFVPKPFL 109 (345)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 997225556599999997592248957888
No 85
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.81 E-value=8.2e-19 Score=150.52 Aligned_cols=100 Identities=26% Similarity=0.371 Sum_probs=86.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 6999769889999999999988-98999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+||||||++.+|.+++++|+.. |++|+ +|.||.||++++.++ .+|+|+||+.||+|||++++++|++.+| +|||+
T Consensus 3 rVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~~g~eAl~~~~~~--~pDvVllDi~MP~mdGie~l~~I~~~~p-~PVim 79 (340)
T PRK12555 3 NVGIVDDSALAREALRRIIARRPDHRVLGVATDGLQARDLCKAQ--PPDVVLLDLEMPRMDGLTFLRRIMRRRP-CPVLI 79 (340)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH--CCCEEEEECCCCCCCHHHHHHHHHHHCC-CCEEE
T ss_conf 89999098899999999996099948999989999999998861--9999997278899987999999998789-98699
Q ss_pred EECCCHHH---HHHHHHHCCCCEEEECCC
Q ss_conf 90678589---987676057980750797
Q gi|254780450|r 761 ISGYAEDA---FSKNLPKDAKFSFLSKPF 786 (803)
Q Consensus 761 ~t~~~~~~---~~~~~~~~~~~~~l~KP~ 786 (803)
+|++.+.. ..+. .+.+..+|++||-
T Consensus 80 vSs~~~~~~~~~~~A-L~~GA~D~i~KP~ 107 (340)
T PRK12555 80 VSSLTEAGASITYEA-LGAGALDAVDKPK 107 (340)
T ss_pred EEECCCCCHHHHHHH-HHCCHHHEEECCC
T ss_conf 850356576999999-9779776684788
No 86
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.81 E-value=1.7e-18 Score=148.33 Aligned_cols=118 Identities=22% Similarity=0.322 Sum_probs=108.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 699976988999999999998898999-9899899989998659995489985878898889999999986899829999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
+||+|||++.+|..++.+|+..+++|+ ++.||.+|++.+..+ +||++|+|+.||+|+|++++++||+..|+.||+++
T Consensus 2 ~vlivDDh~lvr~gl~~ll~~~~~~vv~~~~~~~~~l~~~~~~--~pDvvllDl~lp~~~G~~~~~~ir~~~~~~~viv~ 79 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV 79 (204)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 8999869899999999999868998999979999999998743--97999995899999841678889872798059999
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 06785899876760579807507979999999999985137
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
|++.+......+...|..+|++|+.+.++|.++|+.+.++.
T Consensus 80 s~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~aI~~v~~G~ 120 (204)
T PRK09958 80 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred ECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 72465211443352686379978999999999999997799
No 87
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=5.5e-19 Score=151.73 Aligned_cols=118 Identities=35% Similarity=0.537 Sum_probs=106.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC---CC
Q ss_conf 875699976988999999999998898999989989998999865999548998587889888999999998689---98
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYP---SL 756 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~---~~ 756 (803)
....||+|||.+.++..++..|+..||.|.+|.||.+|+++..+++ +|+||+|++||+|||++++++|+...| .+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCC--CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 2014889658666899999999742641464147507788751168--85677642577765999999987249765653
Q ss_pred CEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 2999906785899876760579807507979999999999985
Q gi|254780450|r 757 KFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELL 799 (803)
Q Consensus 757 ~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L 799 (803)
|++++||+++.........++..+||.||+++..|...++..+
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 2599860587699999997247777528898899999999999
No 88
>PRK09191 two-component response regulator; Provisional
Probab=99.81 E-value=1.1e-18 Score=149.61 Aligned_cols=115 Identities=22% Similarity=0.412 Sum_probs=99.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHHHCCCCCEE
Q ss_conf 5699976988999999999998898999-98998999899986599954899858788-988899999999868998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMP-EMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp-~m~G~~~~~~ir~~~~~~~ii 759 (803)
.+|||||||+.+.+-+..+|+.+||+|. .|.++.+|+++++++ ++|+||||++|+ +|||.++++.|++.. ++|||
T Consensus 138 ~rILIVEDE~lIAmdLe~~l~~lG~~V~GiA~t~~eAl~la~~~--~PDlvL~DI~L~d~~sGIdaa~~I~~~~-~iPvI 214 (261)
T PRK09191 138 TSVLIIEDEPIIAMDLEQLVESLGHRVVGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTF-DVPVI 214 (261)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC--CCCEEEEEEECCCCCCHHHHHHHHHHHC-CCCEE
T ss_conf 88799858599999999999987996787627899999997425--9898999534799987999999999828-99989
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 990678589987676057980750797999999999998513
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
++|||++........+. ..+++|||+.+++..+|.++|--
T Consensus 215 FiTAyperlltg~~~ep--~~li~KPf~~~~v~aai~qAlff 254 (261)
T PRK09191 215 FITAFPERLLTGERPEP--AFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EECCCHHHHCCCCCCCC--CEEECCCCCHHHHHHHHHHHHHH
T ss_conf 97778465302788887--40356989889999999999972
No 89
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.80 E-value=1.5e-17 Score=141.57 Aligned_cols=163 Identities=27% Similarity=0.383 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCEEEEECHHHHHH---HHHHHH
Q ss_conf 888876430045421200584358534678999999998750-3568169998148972269987169999---999987
Q gi|254780450|r 466 ANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLI-SEPPQVKLTVDYERDLWGVKTDLSQFEQ---VLVNLC 541 (803)
Q Consensus 466 ~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~v~~D~~~l~q---vl~NLl 541 (803)
..++..++++|-+- .-..++ +.+..+...+..+++.+. ..++.+++.+.-. -+..|..-|.+ -|..|+
T Consensus 315 ~~~l~r~~~dLq~~--vm~~RM--vP~~~lf~r~~R~VRdlar~~gK~V~L~i~G~----dtelDr~Ile~L~dPL~HLl 386 (662)
T PRK10547 315 MGQLQRNARDLQES--VMSIRM--MPMEYVFSRFPRLVRDLAGKLGKQVELTLVGS----STELDKSLIERIIDPLTHLV 386 (662)
T ss_pred HHHHHHHHHHHHHH--HHHHCC--EEHHHHHHHHHHHHHHHHHHHCCEEEEEEECC----CEEEHHHHHHHHHHHHHHHH
T ss_conf 99999999999999--998625--21899888878999999998698259999668----67771999998887999998
Q ss_pred HHHHH----------HHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH-------------
Q ss_conf 42276----------5206788579999985042101224556678897899999978866884454-------------
Q gi|254780450|r 542 VNAHH----------AIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIM------------- 598 (803)
Q Consensus 542 ~NA~~----------A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~------------- 598 (803)
.||.| |...|..|+|+++... .|++|.|+|+|+|-||+.+..
T Consensus 387 RNAvDHGIE~peeR~a~GKp~~G~I~l~a~~---------------~g~~v~I~v~DDGrGiD~e~Ir~kAv~kGL~~~e 451 (662)
T PRK10547 387 RNSLDHGIELPEKRLAAGKNSVGNLILSAEH---------------QGGNICIEVTDDGAGLNRERILAKAASQGLAVSE 451 (662)
T ss_pred HHHHHHCCCCHHHHHHCCCCCEEEEEEEEEE---------------CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 7424304899889987599972799999998---------------5999999998189998999999999984999853
Q ss_pred --------HHCCCCCCCCCCCC---CCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf --------20232222101357---765303889999985167549999618894299999437
Q gi|254780450|r 599 --------EKIFEPFFTTKKVG---EGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 599 --------~~iFepF~ttk~~g---~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
.-||.|-|+|++.- .|.|.||-+||.-|+.+||+|.|+|++|+||||++.||.
T Consensus 452 ~lsd~e~~~LIF~PGFSTa~~Vt~lSGRGVGmDVV~~~v~~l~G~v~v~S~~G~GT~F~l~lPl 515 (662)
T PRK10547 452 NMSDDEVGMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPL 515 (662)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCC
T ss_conf 3899999999717998623223568886646899999999829989999608980799997887
No 90
>PRK09483 response regulator; Provisional
Probab=99.80 E-value=5.5e-18 Score=144.69 Aligned_cols=118 Identities=29% Similarity=0.464 Sum_probs=108.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 6999769889999999999988-98999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+||+|||++.+|..++.+|+.. |++|+ +|.++.+|++.++++ +||++|+|+.||+|+|++++++|++..|++|||+
T Consensus 3 ~VlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~--~pDvvllDl~lp~~~Gl~~~~~i~~~~p~~~viv 80 (216)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTN--AVDVVLMDMNMPGIGGLEATRKILRSTPDVKIIM 80 (216)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 89998499999999999997489958999989999999999855--9999998688989875237788874089985786
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 906785899876760579807507979999999999985137
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
+|++.++.........|..+|++|+.+.++|.++|+.+++++
T Consensus 81 ls~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~ 122 (216)
T PRK09483 81 LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (216)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 305663288999997488789947999999999999998599
No 91
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.79 E-value=4.7e-18 Score=145.16 Aligned_cols=119 Identities=24% Similarity=0.348 Sum_probs=106.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 5699976988999999999998-898999-98998999899986599954899858788988899999999868998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLET-RGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~-~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
-+||||||++.++..++.+|+. .+++|+ +|.|+.+|++.+... +||+||+|++||+|+|+++++.||+..|.+||+
T Consensus 7 irIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~~--~pDlvllD~~lp~~~G~~~~~~l~~~~p~~~ii 84 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DIDVILLDLNMKGMSGLDTLNALRRDGVTAQII 84 (215)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCCCHHHHHHHCCCCCCEE
T ss_conf 579998398999999999997589928999989999999998644--998999808998998741233565418877368
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9906785899876760579807507979999999999985137
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
++|++............|..+||+||.+.++|..+|+.++++.
T Consensus 85 vlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G~ 127 (215)
T PRK10403 85 ILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAKGS 127 (215)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 8632432367899874687668848999999999999998499
No 92
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.79 E-value=2.8e-18 Score=146.77 Aligned_cols=119 Identities=25% Similarity=0.379 Sum_probs=106.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 56999769889999999999988-98999-98998999899986599954899858788988899999999868998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
.+||||||++.++..++.+|+.. +++|+ +|.||.+|++.+.+. +||+||+|+.||+|||++++++||+..|++|||
T Consensus 7 irVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~ea~~~~~~~--~pDlvllDl~lp~~~G~~~~~~l~~~~~~~~ii 84 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSGRIV 84 (216)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 789998399999999999997589938999989999999998707--999999959999988876423233457887467
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9906785899876760579807507979999999999985137
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
++|++..+.........|..+|++||++.++|.++|+.++.++
T Consensus 85 vlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~L~~ai~~v~~g~ 127 (216)
T PRK10651 85 VFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 127 (216)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 6305541889999996698789837899999999999998599
No 93
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.79 E-value=2.2e-18 Score=147.44 Aligned_cols=266 Identities=16% Similarity=0.138 Sum_probs=195.5
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 99999985249809999599938981066886709995673156110002787616789999999832432320389860
Q gi|254780450|r 27 PLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQ 106 (803)
Q Consensus 27 ~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~ 106 (803)
+.+|+.+|.+|-+|-++|..-.|+|+|.||.++|||..+|.+|+.+++++....+.+....+|..+....+.. .
T Consensus 4 e~~RqtVdqAp~AISITDlKANILyaN~AF~~iTGY~~eE~iGkNES~LSn~tTPpeVYQaLWg~la~qkPW~------G 77 (496)
T TIGR02938 4 ELYRQTVDQAPVAISITDLKANILYANDAFSEITGYAKEEVIGKNESVLSNRTTPPEVYQALWGSLAEQKPWA------G 77 (496)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC------C
T ss_conf 5688866228803643101456999956632155865621112554012685887179999998863058986------5
Q ss_pred CCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEH
Q ss_conf 10000489867999999999982378806999999978338899999999999999999852596199992999689764
Q gi|254780450|r 107 SLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYIN 186 (803)
Q Consensus 107 ~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N 186 (803)
.+-++++||..+.-.+++.|+. ...|....+++-.|||||.-.-|+...+..-...+.++.+|+.++++|++||++.-|
T Consensus 78 ~LlNRrkDg~lYLAeLtvaPvl-neaGeT~hflGMHRd~tElh~Leq~V~nQ~l~iE~VV~aaPva~vllD~~gRv~LdN 156 (496)
T TIGR02938 78 KLLNRRKDGELYLAELTVAPVL-NEAGETTHFLGMHRDVTELHRLEQRVANQKLLIEAVVDAAPVAAVLLDEQGRVVLDN 156 (496)
T ss_pred CEECCCCCCCHHHHHHCCCCHH-CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECC
T ss_conf 1000011653002220202000-146881587325454357889988897646789999878654100056998688167
Q ss_pred HHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCE-EEEEEEEEEEEECCCCCEEE
Q ss_conf 67986429996780456321888088204899999986200267148889999804897-99999955676538885547
Q gi|254780450|r 187 ATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDNGH-GIPVKIVHHILASCDGKPGE 265 (803)
Q Consensus 187 ~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~-~~~v~~~~~~~~~~~G~~~~ 265 (803)
..||++- -|+..-. ...++.+.+.++..+.+...+.+...... .|.++-+. +|+ ..|..+..+.+.-.++....
T Consensus 157 ~~yk~La-~DL~v~e-pa~~~l~lLre~~~e~~~~~~~q~~afsn--~E~rfD~g-gGR~~RWlSc~g~~i~~e~~~ad~ 231 (496)
T TIGR02938 157 LEYKKLA-SDLKVEE-PAELLLKLLREELAEDLEELENQEKAFSN--KELRFDRG-GGRSARWLSCAGRVIRIEEDSADS 231 (496)
T ss_pred HHHHHHH-HHCCCCC-CHHHHHHHHHHHHHHHHHHHCCCCCEECC--CEEEEECC-CCCCCCCEEECCCEEEEECCCCCE
T ss_conf 7688787-4214144-17999998508765278652021101015--40354168-878850102023235311364011
Q ss_pred ---------EEEEEEEHHHHHHHH--------HHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf ---------999998607899999--------999999999999983467509998
Q gi|254780450|r 266 ---------SRTVVVSRKNCDSGD--------PSGTIANMRFNRFFNNIPMAIASI 304 (803)
Q Consensus 266 ---------~~~~~~Dit~~k~~e--------~~l~~se~rl~~i~e~~p~~I~~~ 304 (803)
..-++-|||+.|+.. +++.+.|+++..+=|....+|+.+
T Consensus 232 fF~~~e~~yLLLti~Dis~lr~~Qe~~Rl~aLqAlmAEEE~le~~rEtl~AAIhrl 287 (496)
T TIGR02938 232 FFAAAEKRYLLLTIDDISELRKKQERARLSALQALMAEEEKLEALRETLSAAIHRL 287 (496)
T ss_pred EECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56168998305663647888999999999998999989988888766688888885
No 94
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.78 E-value=1.7e-17 Score=141.25 Aligned_cols=119 Identities=23% Similarity=0.367 Sum_probs=108.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 56999769889999999999988-98999-98998999899986599954899858788988899999999868998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
.+||||||++.+|..++.+|+.. +++|+ .|.|+.++++.+++. ++|++|+|+.||++||+++++.|++.+|++||+
T Consensus 4 ~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~--~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~il 81 (210)
T PRK09935 4 ASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTY--PVDLVILDIELPGTDGFTLLKRIKQIQETVKVL 81 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEE
T ss_conf 889998596999999999996298928999989999999999747--999999889999988640567898738997089
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 9906785899876760579807507979999999999985137
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
++|++.+..........|..+|++|+.+.++|..+|+.++++.
T Consensus 82 vls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G~ 124 (210)
T PRK09935 82 FLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSGY 124 (210)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 9717672999999996687768867899999999999998599
No 95
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=99.78 E-value=6.8e-18 Score=144.05 Aligned_cols=118 Identities=23% Similarity=0.426 Sum_probs=104.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC--CCC
Q ss_conf 56999769889999999999988-98999-989989998999865999548998587889888999999998689--982
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYP--SLK 757 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~--~~~ 757 (803)
-+|+|+|||-..+.+++++|..+ .++|+ +|.||.||++++++. +||+|++||=||-|||.-++++|++..- .-+
T Consensus 3 Iri~i~DDNkEFc~lL~eY~~~Q~D~EVvG~A~nG~~a~~~I~~q--~PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P~ 80 (270)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAAQEDMEVVGVAHNGVDALELIKEQ--KPDVVVLDIIMPHLDGIGVLEKLNEIELKARPR 80 (270)
T ss_pred EEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHC--CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 289998288899999999985289838997414768999999608--998999515043000579999988988744895
Q ss_pred EEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 99990678589987676057980750797999999999998513
Q gi|254780450|r 758 FIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 758 ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
||++||++++...+...+-|..=|+-|||+++-|...|+|+...
T Consensus 81 vi~LsAfGQE~ITqrA~~LGADYYvlKPfDle~L~~RIRQl~~~ 124 (270)
T TIGR02875 81 VIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAEG 124 (270)
T ss_pred EEEEECCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 88852237558999999728981566504178899999986246
No 96
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.78 E-value=5.2e-17 Score=137.85 Aligned_cols=167 Identities=31% Similarity=0.440 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCEEEEECHHHHHHH---H
Q ss_conf 99998888764300454212005843585346789999999987503-5681699981489722699871699999---9
Q gi|254780450|r 462 IKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLIS-EPPQVKLTVDYERDLWGVKTDLSQFEQV---L 537 (803)
Q Consensus 462 i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~v~~D~~~l~qv---l 537 (803)
......++..++++|-+--- ..+| +-+..++...-.+++.+.. -++++++.+.-.. +..|.+-+.++ |
T Consensus 366 l~~~~~~l~~~~~~LQd~vm--~~RM--vP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~----telDksIlE~l~dPL 437 (716)
T COG0643 366 LDEALRQLSRLTTDLQDEVM--KIRM--VPFEQVFSRFPRMVRDLARKLGKQVELVIEGED----TELDKSILERLGDPL 437 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHC--EEHHHHHHHCCHHHHHHHHHHCCEEEEEEECCC----EEEHHHHHHHHCCCH
T ss_conf 99999999999999999999--9700--039998744409999999986991699996487----134298998864669
Q ss_pred HHHHHHHH----------HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH----------
Q ss_conf 99874227----------6520678857999998504210122455667889789999997886688445----------
Q gi|254780450|r 538 VNLCVNAH----------HAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDI---------- 597 (803)
Q Consensus 538 ~NLl~NA~----------~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~---------- 597 (803)
..|+.||. .|...|..|+|+++..+ .|+++.|+|+|+|-||+++.
T Consensus 438 ~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~---------------~gn~ivIev~DDG~Gid~ekI~~KAiErGl 502 (716)
T COG0643 438 THLVRNAVDHGIETPEERRAAGKPEEGTITLSAYH---------------EGNNIVIEVSDDGAGIDREKIREKAIERGL 502 (716)
T ss_pred HHHHHCCHHCCCCCHHHHHHCCCCCCCEEEEEEEC---------------CCCEEEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 98885001105898899987598986369999983---------------798699999568998799999999998299
Q ss_pred --------------HHHCCCCCCCCCCCC---CCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf --------------420232222101357---765303889999985167549999618894299999437
Q gi|254780450|r 598 --------------MEKIFEPFFTTKKVG---EGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 598 --------------~~~iFepF~ttk~~g---~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
..-||.|-|||+..- .|.|.||=+||.-++.+||+|.|+|++|+||+|+|.||.
T Consensus 503 i~~~~a~~lSd~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPL 573 (716)
T COG0643 503 ITEEEAETLSDEEILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPL 573 (716)
T ss_pred CCHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCC
T ss_conf 88677520799999988736998734111016577657899999999739989999627897699996687
No 97
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.77 E-value=3.9e-17 Score=138.69 Aligned_cols=118 Identities=29% Similarity=0.466 Sum_probs=107.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC-CEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 69997698899999999999889-8999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRG-YTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g-~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+||+|||++.+|..++.+|+..+ ++|+ +|.||.++++.+... .+|++|||+.||+|||+++++.||+..|+++|++
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~--~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvv 79 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAREL--KPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVV 79 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 49998097779999999998689966999827889999985137--9988998378899875999999998689972999
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 906785899876760579807507979999999999985137
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
+|++.++.........|..+|+.|+.+.++|.++|+.++++.
T Consensus 80 lt~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G~ 121 (211)
T COG2197 80 LTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG 121 (211)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 967789899999997799699867999999999999997588
No 98
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-17 Score=142.60 Aligned_cols=119 Identities=30% Similarity=0.422 Sum_probs=105.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 56999769889999999999988989999899899989998659995489985878898889999999986899829999
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
..|-|||||.++|+.+..+|+..||+|..-.|+.+=|... ....+-++|+|++||||+|.++-+++++..+.+|||++
T Consensus 5 ~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~--~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfi 82 (202)
T COG4566 5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA--PLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFL 82 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHC--CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 7689976848899999999983895366504799998306--67889769985578888508999999953999887998
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 06785899876760579807507979999999999985137
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
|||++-.+.-...+.|..+||.|||+-..|+.+|+++++-+
T Consensus 83 TGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 83 TGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred ECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 27887289999997421567747885489999999999988
No 99
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.76 E-value=8.3e-16 Score=129.36 Aligned_cols=188 Identities=18% Similarity=0.229 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHHHHHHH----HHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
Q ss_conf 034256641589999999----99985079---98478888999999988887643004542120058435853467899
Q gi|254780450|r 425 GGIAHDFNNVLTAILLSS----DHLLLQSR---SSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIG 497 (803)
Q Consensus 425 a~isHelr~pL~~I~g~~----~ll~~~~~---~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~ 497 (803)
+.|||||..+|.-.+.|. ++|....+ ..++....+..+.+..+.+..-++.+|.--|.. ....++...+.
T Consensus 366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fRl~---l~~~~L~~AL~ 442 (568)
T PRK10935 366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFRLT---IQEANLGSALE 442 (568)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCHHHHHH
T ss_conf 899998441266578999999999998742256538899999999999999999999999983226---77568799999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 99999987503568169998148972269987169---999999987422765206788579999985042101224556
Q gi|254780450|r 498 NLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQ---FEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYS 574 (803)
Q Consensus 498 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~---l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~ 574 (803)
++..-+... .+..+.++++.+ ....|+.+ +-||+.+.++| |+|+.++++|+|++...
T Consensus 443 ~~~~~~~~q--~~~~i~l~~~l~----~~~l~~~~~i~llrIvqEALtN---~~KHA~A~~V~V~~~~~----------- 502 (568)
T PRK10935 443 EMLDQLRNQ--TSAKITLDCRLP----SQALDAQQQVHLLQIIREATLN---AIKHANASEIAVSCVTN----------- 502 (568)
T ss_pred HHHHHHHHH--CCCEEEEECCCC----CCCCCHHHHHHHHHHHHHHHHH---HHHHCCCCEEEEEEEEC-----------
T ss_conf 999999751--194699970688----7778888999999999999999---99808998799999974-----------
Q ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 678897899999978866884454202322221013577653038899999851675499996188942999994375
Q gi|254780450|r 575 DLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRY 652 (803)
Q Consensus 575 ~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~ 652 (803)
+...+.++|+|||+||++.. + .+.++||.|.+.-++.+||++.++|.||.||+.++.+|..
T Consensus 503 ---~~~~v~l~V~DnG~Gf~~~~------------~--~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~~ 563 (568)
T PRK10935 503 ---PDGEVTVSIRDDGVGIGELK------------E--PEGHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPSQ 563 (568)
T ss_pred ---CCCEEEEEEEECCCCCCCCC------------C--CCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCC
T ss_conf ---89879999977994789878------------8--8998575999999996699899997799966999985898
No 100
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.74 E-value=3.1e-16 Score=132.38 Aligned_cols=119 Identities=23% Similarity=0.292 Sum_probs=107.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCC---CCHHHHHHHHHHHCCCC
Q ss_conf 56999769889999999999988-98999-989989998999865999548998587889---88899999999868998
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPE---MDGPTLLRELRKTYPSL 756 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~---m~G~~~~~~ir~~~~~~ 756 (803)
-+||+|||++.+|..++.+|+.. +++|+ +|.||.++++.+... .+|++|+|+.||+ |||+++++.||+.+|++
T Consensus 4 irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~--~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~~ 81 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKL--DAHVLITDLSMPGDKYGDGITLIKYIKRHFPSL 81 (216)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 889998897999999999981599968999879999999998623--989899826779998878999999999858998
Q ss_pred CEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 2999906785899876760579807507979999999999985137
Q gi|254780450|r 757 KFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 757 ~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
+||++|++.+..........|..+|+.|=-+.++|..+|+.+.++.
T Consensus 82 ~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G~ 127 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGK 127 (216)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 0899847787899999985897489987899999999999998799
No 101
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.73 E-value=3.5e-16 Score=131.96 Aligned_cols=120 Identities=37% Similarity=0.583 Sum_probs=101.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 75699976988999999999998898999989989-99899986599954899858788988899999999868998299
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGT-DALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~-eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
..+||+|||++.++..++.+|+.+|+.|..+.||. +|++.++..+ .||+|++|+.||+|||+++++++|+..+.+|+|
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~~~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pvv 83 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIPVI 83 (130)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC-CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 8889997899999999999998779789995783999999986278-999999806887888899999999718999689
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHHHCC
Q ss_conf 9906785899876760579807507979999-99999998513
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQ-LATSVHELLQS 801 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~-L~~~i~~~L~~ 801 (803)
++|++............+..+|+.||+...+ |...+++++..
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 84 LLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9986786765999997687689758998799999999999864
No 102
>PRK13557 histidine kinase; Provisional
Probab=99.73 E-value=7.3e-16 Score=129.73 Aligned_cols=134 Identities=10% Similarity=0.096 Sum_probs=105.6
Q ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC---CCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCH-HHHH
Q ss_conf 78338899999999999999999852596199992---9996897646798642999678045632188808820-4899
Q gi|254780450|r 143 TDITSERKDQEKFFRELQNAIDYLDHSPVGFMSAD---HQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGE-GLAL 218 (803)
Q Consensus 143 ~DIT~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D---~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~-~~~~ 218 (803)
.|+++++. +.++.+++++++++++.| +||+|+|||++|++++||+.+|++++.. ..+.+|+ +.+.
T Consensus 20 ~~~~~~~~---------~~~~~~v~~~~~~~~~~d~~~~Dg~I~~vN~af~~~tGYs~eEviGk~~--~~L~~p~~~~~~ 88 (538)
T PRK13557 20 GDVSDHRS---------DIFFAAVETTRMPMIVTDPRQPDNPIVFANRAFLEMTGYAAEEIIGNNC--RFLQGPETDRAT 88 (538)
T ss_pred HHHHHHHH---------HHHHHHHHHCCCCEEEECCCCCCCEEEEECHHHHHHHCCCHHHHCCCCH--HHCCCCCCCHHH
T ss_conf 10567889---------9999999607973899358999987999839999987959999869998--770898899999
Q ss_pred HHHHHHHHCCCCEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 9999862002671488899998048979999995567653888554799999860789999999999999
Q gi|254780450|r 219 IQAIRTEPSHQKITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANM 288 (803)
Q Consensus 219 ~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~ 288 (803)
+...+.....++.+..|...++ ++|+.+|+.+..+++.+.+|...+++++..|||++|++|++|++++.
T Consensus 89 ~~~~~~~i~~~~~~~~E~~n~r-KDG~~~w~~~~i~pv~d~~G~~~~~~~i~~DITerk~~E~~L~qaqk 157 (538)
T PRK13557 89 VADVRDAIAERREIATEILNYR-KDGSSFWNALFVSPVYNDAGDLVYFFGSQLDVSRRRDAEDALRQAQK 157 (538)
T ss_pred HHHHHHHHHCCCCEEEEEEEEC-CCCCEEEEEEEEEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 9999999975993687999987-99999999989999998999999999988344499999999999999
No 103
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.71 E-value=8.6e-16 Score=129.24 Aligned_cols=115 Identities=29% Similarity=0.365 Sum_probs=102.2
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 699976988999999999998-898999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLET-RGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~-~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+|+||||++.+|..++.+|+. .+++++ .|.|+.+|++.+..+ .||++|+|+.||+|+|++++++++ +.+|||+
T Consensus 3 ~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~--~~dvvllD~~mp~~~g~~~~~~l~---~~~~viv 77 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP---KGMATIM 77 (196)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCCHHHHHHHH---CCCCEEE
T ss_conf 99998797999999999981299959999989999999988744--999999878878862077999984---3874899
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 906785899876760579807507979999999999985137
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
+|++............|..+||+|+.+.++|..+|+.++++.
T Consensus 78 ls~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G~ 119 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred EEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 973075999999997599889977899999999999998699
No 104
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.71 E-value=7.5e-16 Score=129.67 Aligned_cols=118 Identities=27% Similarity=0.452 Sum_probs=103.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCEE
Q ss_conf 569997698899999999999889899998998999899986599954899858788988899999999868--998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTY--PSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~--~~~~ii 759 (803)
.+||+|||+..++..++.+|...||.|..|++|.+|+..+.+. +||+||+|+.||+|||+++.+++|... ..+|||
T Consensus 133 ~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii 210 (435)
T COG3706 133 KKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIPII 210 (435)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEE
T ss_conf 5089974807799999999875363366515989999997468--98589995578766789999997244444566389
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 990678589987676057980750797999999999998513
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
++|+-.++...-...+.|..+|+.||+...+|...+++.|..
T Consensus 211 ~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~ 252 (435)
T COG3706 211 LLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRR 252 (435)
T ss_pred EEECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 995266347899999768851673477879999999999985
No 105
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.68 E-value=4.5e-16 Score=131.24 Aligned_cols=112 Identities=25% Similarity=0.423 Sum_probs=99.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+|++||||..+..++..+|.+.|+.+..+++..||++.+..+ .+|||++|+.||+|+|.|++.++|...+.+|||++|
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIs 79 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFIS 79 (361)
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 279984638999999999986110210068878899999843--887799985237860878999998753148689996
Q ss_pred CCCHHHHHH-HHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 678589987-6760579807507979999999999985
Q gi|254780450|r 763 GYAEDAFSK-NLPKDAKFSFLSKPFSLKQLATSVHELL 799 (803)
Q Consensus 763 ~~~~~~~~~-~~~~~~~~~~l~KP~~~~~L~~~i~~~L 799 (803)
+|++-+... .+.. .+||.|||+++.|-++|.+.+
T Consensus 80 sh~eya~dsf~~n~---~dYl~KPvt~ekLnraIdr~~ 114 (361)
T COG3947 80 SHAEYADDSFGMNL---DDYLPKPVTPEKLNRAIDRRL 114 (361)
T ss_pred CCHHHHHHHCCCCH---HHHCCCCCCHHHHHHHHHHHH
T ss_conf 30565232035566---754168888889999999874
No 106
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.68 E-value=2.5e-15 Score=126.03 Aligned_cols=115 Identities=25% Similarity=0.409 Sum_probs=100.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 6999769889999999999988-98999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+||+||||+.+.++-+++++.. ||.++ .|.++.||..++.+.. +||||+|+.||+-+|.+++..+|+.+..+-||+
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~ 79 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVIV 79 (224)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHC--CCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEE
T ss_conf 289970865899999999973899538986064999999998408--997999602679850779999984689978899
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 906785899876760579807507979999999999985
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELL 799 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L 799 (803)
+||-++-..-+.....|.++||-|||..+.|.+++.++.
T Consensus 80 iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 80 ITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred EECCCHHHHHHHHHHCCCHHHEECCEEHHHHHHHHHHHH
T ss_conf 953443789999996582322056340999999999999
No 107
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.65 E-value=1.8e-13 Score=112.94 Aligned_cols=191 Identities=18% Similarity=0.185 Sum_probs=126.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
Q ss_conf 876303425664158999999999985079-9847888899999998888764300454212005843585346789999
Q gi|254780450|r 421 GTLAGGIAHDFNNVLTAILLSSDHLLLQSR-SSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNL 499 (803)
Q Consensus 421 ~~~~a~isHelr~pL~~I~g~~~ll~~~~~-~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~ 499 (803)
+..+..+...+-+.|+.+.-.+++|....+ ..++..+.+..+....+.+..-++.+|.--|. +....++...+...
T Consensus 363 ~~IARELHDslaQ~Ls~Lkiq~~~l~~~~~~~~~~~~~~l~~i~~~~~~a~~~lReLl~~fR~---~l~~~~l~~aL~~~ 439 (569)
T PRK10600 363 ATIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWAQLRELLTTFRL---QLTEPGLRPALEAS 439 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHH
T ss_conf 999999888872227899999999997305798889999999999999999999999998355---77756679999999
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCEEEEE-CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 99998750356816999814897226998-71699999999874227652067885799999850421012245566788
Q gi|254780450|r 500 RMMIQKLISEPPQVKLTVDYERDLWGVKT-DLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPT 578 (803)
Q Consensus 500 ~~~~~~~~~~~~~i~~~~~~~~~~~~v~~-D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~ 578 (803)
..-+... .+..+.++++.+... +.. ....+-||+.+-++| ++|..+..+|+|++.. .
T Consensus 440 i~~~~~~--~g~~i~l~~~~~~~~--l~~~~~i~l~rIvqEALsN---v~KHA~A~~v~V~l~~---------------~ 497 (569)
T PRK10600 440 CEEFSAR--FGFPVKLDYQLPPRL--VPSHQAIHLLQIAREALSN---ALKHAQASEVVVTVAQ---------------N 497 (569)
T ss_pred HHHHHHH--CCCEEEEEECCCCCC--CCHHHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE---------------C
T ss_conf 9999976--097799995588667--9878999999999999999---9970899879999997---------------6
Q ss_pred CCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 978999999788668844542023222210135776530388999998516754999961889429999943
Q gi|254780450|r 579 KDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 579 ~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
++.+.++|+|+|+|||++. .++.+.||.|.+.-++..||++.+.|.||+||+++++||
T Consensus 498 ~~~~~l~I~DdG~Gf~~~~--------------~~~~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~f~ 555 (569)
T PRK10600 498 DNQVKLSVQDNGCGVPENA--------------ERSNHYGLIIMRDRAQSLRGDCSVRRRESGGTEVVVTFI 555 (569)
T ss_pred CCEEEEEEEECCCCCCCCC--------------CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEC
T ss_conf 9989999988998989888--------------889997815999999976998999866999589999975
No 108
>PRK10060 RNase II stability modulator; Provisional
Probab=99.64 E-value=8e-12 Score=101.27 Aligned_cols=161 Identities=12% Similarity=0.048 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 99999999999999852596199992999689764679864299967804563218880882048999999862002671
Q gi|254780450|r 152 QEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKI 231 (803)
Q Consensus 152 ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (803)
...+.++++.....++++..||++.|.+|+|+.+|++|++++||+.+|++|+++...-....++.......+.....+..
T Consensus 103 ~~~~~~~l~lAa~Vfe~a~egI~ItD~~~~I~~vN~af~~iTGy~~~eviG~n~~~l~~s~~~~~~~~~~~~~~l~~~~~ 182 (663)
T PRK10060 103 ARDLSHGLSFAEQVVSEANSVIVILDSRGNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNA 182 (663)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999887999999854586499997999988786797788689999918998799835755448899999999974981
Q ss_pred EEEEEEEEEEECCEEEEEEEEEEEEECCCC-CEEEEEEEEEEHHHHHHHHHHHHHHH---------------HHHHHHHH
Q ss_conf 488899998048979999995567653888-55479999986078999999999999---------------99999983
Q gi|254780450|r 232 TTLDLDLRRIDNGHGIPVKIVHHILASCDG-KPGESRTVVVSRKNCDSGDPSGTIAN---------------MRFNRFFN 295 (803)
Q Consensus 232 ~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G-~~~~~~~~~~Dit~~k~~e~~l~~se---------------~rl~~i~e 295 (803)
+..|...+++ +|+.++.... ..+.+..| ...++++++.|||++|++|++++... ++++..+.
T Consensus 183 w~gE~w~r~k-~G~~~~~~~~-~~v~~~~~~~~~~~i~~f~DITe~k~~ee~l~~lA~~D~LTgLPNR~~~~~rL~~ai~ 260 (663)
T PRK10060 183 YEVERWIKTR-KGQRLFLFRN-KFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTDSITGLPNRNAIQELIDHAIA 260 (663)
T ss_pred EEEEEEEEEC-CCCEEEEEEE-EEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8988887405-8964579887-8776078970699999888804899999999987367742386628999999999997
Q ss_pred CC---CCEEEEEEECEEEEEECC
Q ss_conf 46---750999850206998315
Q gi|254780450|r 296 NI---PMAIASIDKKGRILRTNA 315 (803)
Q Consensus 296 ~~---p~~I~~~d~~g~i~~~N~ 315 (803)
.. ..++..+|.| ++-.+|.
T Consensus 261 ~~~~~~~AvlfiDLD-~FK~IND 282 (663)
T PRK10060 261 QADNNQVGIVYLDLD-NFKKVND 282 (663)
T ss_pred HCCCCCEEEEEEECC-CCCHHHH
T ss_conf 176993899999786-7683446
No 109
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.64 E-value=1.8e-14 Score=119.92 Aligned_cols=113 Identities=28% Similarity=0.492 Sum_probs=92.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC-EEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 699976988999999999998898-999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGY-TVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~-~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+|++||||+..+..++.+|+..+. ++. ++.||.||++.+..+ .+|++++|+.||+|||.++++.++.. ...+||+
T Consensus 3 ki~I~DDe~~~~~~l~~~l~~~~~i~~~~~~~~~~eal~~~~~~--~~DllfLDI~m~~~~G~ela~~l~~~-~~~~iIF 79 (239)
T PRK11697 3 KVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEALGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPE-HMPYIVF 79 (239)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHC--CCCEEEECCCCCCCCHHHHHHHHCCC-CCCEEEE
T ss_conf 99999699999999999997587989999989999999999853--99999983998695999999983733-4986999
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 9067858998767605798075079799999999999851
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
+|+|.+-+. +++ ....++||.||++.++|..++.++..
T Consensus 80 vT~~~e~a~-~af-~~~a~dYllKP~~~e~l~~~l~r~~~ 117 (239)
T PRK11697 80 VTAFDEYAI-KAF-EEHAFDYLLKPIDPARLAKTLARLRQ 117 (239)
T ss_pred EECCHHHHH-HHH-HCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 958689999-997-30972665389999999999999999
No 110
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.62 E-value=1.7e-13 Score=113.07 Aligned_cols=206 Identities=18% Similarity=0.245 Sum_probs=130.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0232112210123444444687630342566415899999999998507998478-888999999988887643004542
Q gi|254780450|r 401 ITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDAS-FADLMEIKHNANRAAILVRQLLAF 479 (803)
Q Consensus 401 ITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~-~~~l~~i~~~~~r~~~li~~lLd~ 479 (803)
.++++++.+++-++|..+ ..+.+....-|+.+-|++|.-.+..+. +....++. .+....|.+.+.++.+-+++++
T Consensus 286 L~~nr~LsrqLI~aQE~E-Rr~IARELHDEiGQ~LTAIr~~a~~i~-r~~~~~~~~~~~a~~I~~l~~~i~~~vR~ll-- 361 (497)
T PRK11644 286 LARNRHLAERLLETEESV-RRDVARELHDEIGQTITAIRTQASIVK-RLAADNASVKQSGQLIEQLSLGVYDAVRRLL-- 361 (497)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 999999999999976999-999999700034059999999999986-3269976689999999999999999999999--
Q ss_pred HHHCCCCEEEEE---HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEE-ECHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 120058435853---467899999999875035681699981489722699-8716999999998742276520678857
Q gi|254780450|r 480 SRKQTMRLTVLN---LTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVK-TDLSQFEQVLVNLCVNAHHAIMLKESGS 555 (803)
Q Consensus 480 sr~~~~~~~~~~---l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~-~D~~~l~qvl~NLl~NA~~A~~~~~~G~ 555 (803)
..++|..+| +...++.+..-.+. ...+..+.++++.+.. .+. .-..-+-+|...-++| +.|+.+..+
T Consensus 362 ---~~LRP~~LDdLGL~~AL~~Lv~e~~~-~~~gi~~~l~~~~~~~--~L~~~~~itlYRIvQEaLTN---i~KHA~A~~ 432 (497)
T PRK11644 362 ---GRLRPRQLDDLTLEQAIRSLMRELEL-EDRGIVSHLDWQIDES--ALSETQRVTLFRVCQEGLNN---IVKHADASA 432 (497)
T ss_pred ---HHCCCCCHHHCCHHHHHHHHHHHHHH-HCCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHHHHH---HHHCCCCCE
T ss_conf ---86090311124899999999998765-2579559998268766--79824688999999999999---997378876
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 99999850421012245566788978999999788668844542023222210135776530388999998516754999
Q gi|254780450|r 556 LTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILP 635 (803)
Q Consensus 556 v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v 635 (803)
|.|+... .++.+.++|+|||+|++++. ...|+||.=.++-|+..||++.+
T Consensus 433 V~I~L~~---------------~~~~l~L~I~DDG~Gf~~~~---------------~~~G~GL~GMrERV~aLGG~l~I 482 (497)
T PRK11644 433 VTIQGWQ---------------QDERLMLVIEDNGSGLPPGS---------------GQQGFGLRGMQERVSALGGTLTI 482 (497)
T ss_pred EEEEEEE---------------CCCEEEEEEEECCCCCCCCC---------------CCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 9999997---------------69989999988998989898---------------99998926799999974997999
Q ss_pred EECCCCCEEEEEEECC
Q ss_conf 9618894299999437
Q gi|254780450|r 636 ESEVGKGTIFRIFLPR 651 (803)
Q Consensus 636 ~S~~g~Gt~F~i~lP~ 651 (803)
+|. +||+.+|.||.
T Consensus 483 ~S~--~GT~I~V~LP~ 496 (497)
T PRK11644 483 SCT--HGTRLSVTLPQ 496 (497)
T ss_pred EEC--CCCEEEEECCC
T ss_conf 828--99779995899
No 111
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.62 E-value=8e-14 Score=115.36 Aligned_cols=142 Identities=13% Similarity=0.022 Sum_probs=82.9
Q ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHH
Q ss_conf 83388999999999999999998525961999929996897646798642999678045632188808820489999998
Q gi|254780450|r 144 DITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIR 223 (803)
Q Consensus 144 DIT~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 223 (803)
.|.+|+++|.++.+....+++++|++|+.||.-|++|++.-||++|+.++|++.++++|. +..++..++....+...-
T Consensus 139 e~~~r~~~q~~l~~~~~llRs~~D~~Pdli~~rd~~g~f~gCNrafe~~~G~~e~eliG~--t~~d~~~~e~a~~~~~~D 216 (779)
T PRK11091 139 EIKEREETQIELEQQSSLLRSFLDASPDLVYYRNEDGEFSGCNRAMELLTGKSEKQLVGL--TPKDVYSPEAAEKVIETD 216 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHHH
T ss_conf 999989999999998899998850287515787798765341099998809998998499--835527998899999738
Q ss_pred H-HHCCCCEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 6-2002671488899998048979999995567653888554799999860789999999999999
Q gi|254780450|r 224 T-EPSHQKITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANM 288 (803)
Q Consensus 224 ~-~~~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~ 288 (803)
. ....+....+|..+... +|+..+..+...|+++..|...+++++.+|||+||++|+++.++.+
T Consensus 217 ~~v~~~~~~~~~e~w~~~~-dG~~~~~e~~k~P~~d~~g~~~G~~g~~rDITerk~aeeaLE~Asr 281 (779)
T PRK11091 217 EKVFRHNVSLTYEQWLDYP-DGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQDALEKASR 281 (779)
T ss_pred HHHHHCCCCCEEEEEEECC-CCCEEEEEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHH
T ss_conf 9998647982111346648-9866789986401353899788786300160177899999999999
No 112
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.58 E-value=1.5e-12 Score=106.39 Aligned_cols=210 Identities=22% Similarity=0.280 Sum_probs=139.1
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHH
Q ss_conf 85023211221012344444468763034256641589999999999850799847888899999998888--7643004
Q gi|254780450|r 399 VEITEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRA--AILVRQL 476 (803)
Q Consensus 399 ~DITerk~~E~~L~qa~~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~--~~li~~l 476 (803)
.++|+++..|.+++..++ ..++..+.|.++|-|+.|...+.+-... ..++..+. ..++.+|+ +.++.+.
T Consensus 2 ~~~~~~~~~e~~~~~~~~----~~ll~Ei~HRVKNnLqiIsSll~lq~r~--~~~~~~e~---~~~~~~Ri~sla~~He~ 72 (221)
T COG3920 2 LLTTARKETEERLAESEK----ELLLREIHHRVKNNLQIISSLLRLQARK--FEDEVLEA---LRESQNRIQSLALIHEL 72 (221)
T ss_pred CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHH---HHHHHHHHHHHHHHHHH
T ss_conf 047888889999999989----9999999999887999999999977752--36678999---99998899999999999
Q ss_pred HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEECH-HHHHHHHHHHHHHH-HHHHCCCCCC
Q ss_conf 542120058435853467899999999875035681699981489722699871-69999999987422-7652067885
Q gi|254780450|r 477 LAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDL-SQFEQVLVNLCVNA-HHAIMLKESG 554 (803)
Q Consensus 477 Ld~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~-~~l~qvl~NLl~NA-~~A~~~~~~G 554 (803)
|.-| ....++...++..+...+.+.. ....+.+....++++ .+..|. .-|.-|+..|++|| .+|....++|
T Consensus 73 L~~s-----~~~~~~~~~y~~~L~~~l~~~~-~~~~~~~~~~~~~~~-~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~~G 145 (221)
T COG3920 73 LYKS-----GDDTWDFASYLELLASNLFPSY-GGKDIRLILDSGPNV-FLDPDTAVPLGLIVHELVTNALKHAFLSRPGG 145 (221)
T ss_pred HCCC-----CCCCCCHHHHHHHHHHHHHHHC-CCCCCEEEEECCCCE-EECHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 8068-----8651759999999999988762-788752788228862-26736788999999999998898617888997
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH-HCCCCEE
Q ss_conf 799999850421012245566788978999999788668844542023222210135776530388999998-5167549
Q gi|254780450|r 555 SLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGII-RQSGGYI 633 (803)
Q Consensus 555 ~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv-~~~gG~i 633 (803)
.|.|.+...... +...+.|+|+|.|+|.+.- . +..|+|+.+++.+| ++.||.+
T Consensus 146 ~I~I~~~~~~~~-------------~~~~l~v~deg~G~~~~~~------------~-~~~g~G~~Lv~~lv~~q~~g~~ 199 (221)
T COG3920 146 EIRITLSREGDG-------------GRFLLTVWDEGGGPPVEAP------------L-SRGGFGLQLVERLVPEQLGGEL 199 (221)
T ss_pred EEEEEEEECCCC-------------CEEEEEEEECCCCCCCCCC------------C-CCCCCHHHHHHHHHHHHCCCEE
T ss_conf 799999984799-------------7179999878989888888------------7-8998379999999999679727
Q ss_pred EEEECCCCCEEEEEEECCC
Q ss_conf 9996188942999994375
Q gi|254780450|r 634 LPESEVGKGTIFRIFLPRY 652 (803)
Q Consensus 634 ~v~S~~g~Gt~F~i~lP~~ 652 (803)
...+. .||+|+|.+|..
T Consensus 200 ~~~~~--~Gt~~~i~~~~~ 216 (221)
T COG3920 200 EDERP--DGTEFRLRFPLS 216 (221)
T ss_pred EEECC--CCEEEEEEEECC
T ss_conf 99749--977999998864
No 113
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.57 E-value=9.5e-14 Score=114.83 Aligned_cols=120 Identities=8% Similarity=0.078 Sum_probs=101.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH-HHHHCCCCCE
Q ss_conf 875699976988999999999998898999989989998999865999548998587889888999999-9986899829
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRE-LRKTYPSLKF 758 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~-ir~~~~~~~i 758 (803)
+|.++|+++|....+..++..|+..=--|..+.||.+|++.+ . ++|+||||++||+|+|.+++++ ++...|+++|
T Consensus 9 ~g~~vlL~~dp~l~~~~~a~~l~e~l~v~~~l~~~~~al~~~--~--~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kV 84 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI--S--SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKI 84 (216)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHC--C--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 683899955842999999998898764763024776677644--7--999899848878830899999999725999779
Q ss_pred EEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 999067858998767605798075079799999999999851379
Q gi|254780450|r 759 IFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSDS 803 (803)
Q Consensus 759 i~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~~ 803 (803)
+++|.|.++.........+..||+.|=.+.++|.++|+.++++++
T Consensus 85 liLTt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G~~ 129 (216)
T PRK10100 85 LLLNTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGEC 129 (216)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 999688748999999765876676689999999999999987997
No 114
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.55 E-value=1.8e-13 Score=112.80 Aligned_cols=114 Identities=23% Similarity=0.357 Sum_probs=101.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
..|+||||......+++.++..||.|.+|++..|||..++..++.| .+.|+.|-+-+|+++++.||+..++++||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~Pay--AvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAY--AVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCE--EEEEEEECCCCCHHHHHHHHHCCCCCEEEEEE
T ss_conf 0589618769999999998606862576144999999985179852--88986406887468999998249764389884
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 678589987676057980750797999999999998
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHEL 798 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~ 798 (803)
||+.-+.+-...+.|..+||+||-+.+....++.+-
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 511799999999862455407977768999998602
No 115
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.54 E-value=1.2e-13 Score=114.05 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=92.5
Q ss_pred EEEECCCHHHHHHHHHHHH--H-CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCC-CCC----HHHHHHHHHHHCCC
Q ss_conf 9997698899999999999--8-89899998998999899986599954899858788-988----89999999986899
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLE--T-RGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMP-EMD----GPTLLRELRKTYPS 755 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~--~-~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp-~m~----G~~~~~~ir~~~~~ 755 (803)
+||||||+..++ .|+ - .+|+|..|.|-.+|++.++.| .|-+|.||+++| +-| |+.++++|-+..|+
T Consensus 1 LLiVeDD~glQK----QLkWs~G~~Ye~~~A~DR~sAiA~vRRh--eP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~P~ 74 (451)
T TIGR02915 1 LLIVEDDLGLQK----QLKWSFGADYEVAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAPD 74 (451)
T ss_pred CCEEECCHHHHH----HHHHHCCCCCEEEEECCHHHHHHHHHCC--CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 924536866567----8764157884035534757899986056--9964773675578988745899999999963898
Q ss_pred CCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 829999067858998767605798075079799999999999851
Q gi|254780450|r 756 LKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 756 ~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
+|||.+||+-+...+=.....|.++|-+|||+++.|.=.|.++..
T Consensus 75 TKVIViTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~ 119 (451)
T TIGR02915 75 TKVIVITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFR 119 (451)
T ss_pred CEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 048998668983889999643751013578757899999999888
No 116
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.54 E-value=4.5e-12 Score=103.03 Aligned_cols=182 Identities=25% Similarity=0.334 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCC
Q ss_conf 641589999999999850-7998478888999999988887643004542120058435853467899999999875035
Q gi|254780450|r 431 FNNVLTAILLSSDHLLLQ-SRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISE 509 (803)
Q Consensus 431 lr~pL~~I~g~~~ll~~~-~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 509 (803)
+.+-|+++....++.... ....++..+.+..+.+-++...+-++.+ +..++|..++-..+...+..++.... +
T Consensus 182 v~q~L~~i~m~~~~~~~~~~~~~e~~~~~l~~i~~~~~e~l~evR~~-----v~~Lrp~~l~~~~l~~~l~~~~~~~~-~ 255 (365)
T COG4585 182 VGQSLTAISMLLALLLLLADEDAEKAQEELKEIEKLLREALQEVRAL-----VRDLRPVELEGLGLVEALRALLADFE-E 255 (365)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 87999999999999887212684889999999999999999999999-----99719732212117999999999987-7
Q ss_pred CCCEEEEEECCCCCEEE-EECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 68169998148972269-98716999999998742276520678857999998504210122455667889789999997
Q gi|254780450|r 510 PPQVKLTVDYERDLWGV-KTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVED 588 (803)
Q Consensus 510 ~~~i~~~~~~~~~~~~v-~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D 588 (803)
...+.+........+.+ ..-..-+-+++..-++| |+|..+.-++.|+... ..+.++++|+|
T Consensus 256 ~~~~~~~~~~~~~~~~L~~~~e~~l~rivQEaltN---~~rHa~A~~v~V~l~~---------------~~~~l~l~V~D 317 (365)
T COG4585 256 RTGITVDLSLGSELERLPPEAEDALFRIVQEALTN---AIRHAQATEVRVTLER---------------TDDELRLEVID 317 (365)
T ss_pred HCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH---HHHCCCCCEEEEEEEE---------------CCCEEEEEEEE
T ss_conf 50837886157644679968999999999999989---9875784569999998---------------29889999998
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 886688445420232222101357765303889999985167549999618894299999437
Q gi|254780450|r 589 TGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 589 ~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
||+|++++.. |.|+||.-.|+-|+..||+++++|.||+||+.++.+|.
T Consensus 318 nG~Gf~~~~~---------------~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 318 NGVGFDPDKE---------------GGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred CCCCCCCCCC---------------CCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEC
T ss_conf 9978897645---------------77766766999999869989998559997799999509
No 117
>PRK10060 RNase II stability modulator; Provisional
Probab=99.53 E-value=3.2e-12 Score=104.03 Aligned_cols=571 Identities=15% Similarity=0.133 Sum_probs=251.1
Q ss_pred CCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEE
Q ss_conf 59619999299968976467986429996780456321888088204899999986200267148889999804897999
Q gi|254780450|r 169 SPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDNGHGIP 248 (803)
Q Consensus 169 a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~ 248 (803)
.+.++|.+..+...+...+. | +... +... ...++....++.. .+-+..+.+.+.. -|+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~-----~---~~~~--~~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~ 76 (663)
T PRK10060 16 THSPYWRLAEDSNVLELSAT-----E---ETET--NVTV--ALSPEQAARIREL-----TGITSSLMMTLTL--FGSPLS 76 (663)
T ss_pred CCCCCEEECCCCCEEEEECC-----C---CCCC--CCEE--ECCHHHHHHHHHH-----HHEEEEEEEEEEE--CCCEEE
T ss_conf 99970552167771686335-----7---8788--8311--0688899988866-----4100068998775--384026
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHH
Q ss_conf 9995567653888554799999860-789999999999999999998346750999850206998315544444548846
Q gi|254780450|r 249 VKIVHHILASCDGKPGESRTVVVSR-KNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEG 327 (803)
Q Consensus 249 v~~~~~~~~~~~G~~~~~~~~~~Di-t~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~ 327 (803)
+.++.+.+...... +..+..-|- +..+..+..|+- -.++|++++.||.+.|.+|+|+.+|++|.++. ||..+
T Consensus 77 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~l----Aa~Vfe~a~egI~ItD~~~~I~~vN~af~~iT-Gy~~~ 149 (663)
T PRK10060 77 VHLVGRKINKREWA--GTASAWHDTPSVARDLSHGLSF----AEQVVSEANSVIVILDSRGNIQRFNRLCEEYT-GLKEH 149 (663)
T ss_pred EEEECCEECCCCCC--CCHHHHCCCHHHHHHHHHHHHH----HHHHHHCCCCEEEEECCCCCEEEEHHHHHHHH-CCCHH
T ss_conf 89840130345335--3023203837789999988799----99998545864999979999887867977886-89999
Q ss_pred HHCCCCHHHH-CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCC-CCEEEEEEEEECCCCC
Q ss_conf 6179866661-0111122024666655541123345404887388506899998730456677-6138999998502321
Q gi|254780450|r 328 DGTSNDIFSI-VHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEA-PEEQAILYTVEITEQK 405 (803)
Q Consensus 328 ~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~i~~~~DITerk 405 (803)
+++|+++..+ .+......+.+.+...+...+ .+..|...++++|..+..+.+.. ..++.+ .....|+.+.||||+|
T Consensus 150 eviG~n~~~l~~s~~~~~~~~~~~~~~l~~~~-~w~gE~w~r~k~G~~~~~~~~~~-v~~~~~~~~~~~i~~f~DITe~k 227 (663)
T PRK10060 150 DVIGQSVFKLFMSRREAAASRRNIRGFFRSGN-AYEVERWIKTRKGQRLFLFRNKF-VHSGSGKNEIFLICSGTDITEER 227 (663)
T ss_pred HHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCC-CEEEEEEEEECCCCEEEEEEEEE-EECCCCCEEEEEEEEEEECCHHH
T ss_conf 91899879983575544889999999997498-18988887405896457988787-76078970699999888804899
Q ss_pred CCCCCHHHHH----------HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCH-HHHHHH-HHHHHHHHHHHH
Q ss_conf 1221012344----------44446876303425664158999999999985079-9847-888899-999998888764
Q gi|254780450|r 406 ALEARMAQTQ----------KLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSR-SSDA-SFADLM-EIKHNANRAAIL 472 (803)
Q Consensus 406 ~~E~~L~qa~----------~~~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~-~~~~-~~~~l~-~i~~~~~r~~~l 472 (803)
+.|++|..-- |.--..++-..++..=++.+.. .|.+ +++.+ ..|. .+..=. -+.+-++|+...
T Consensus 228 ~~ee~l~~lA~~D~LTgLPNR~~~~~rL~~ai~~~~~~~~Av--lfiD--LD~FK~INDt~GH~~GD~lL~~vA~RL~~~ 303 (663)
T PRK10060 228 RAQERLRILANTDSITGLPNRNAIQELIDHAIAQADNNQVGI--VYLD--LDNFKKVNDAYGHMFGDQLLQDVSLAILSC 303 (663)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEE--EEEE--CCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999987367742386628999999999997176993899--9997--867683446627088999999999999976
Q ss_pred HHHHHHHHHHCCCCEEEE----EHHHHHHHH-HHHHHHHH----CCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 300454212005843585----346789999-99998750----356816999814897226998716999999998742
Q gi|254780450|r 473 VRQLLAFSRKQTMRLTVL----NLTEVIGNL-RMMIQKLI----SEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVN 543 (803)
Q Consensus 473 i~~lLd~sr~~~~~~~~~----~l~~~i~~~-~~~~~~~~----~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~N 543 (803)
+..---++|...-.-..+ +..+ +..+ ..++..+. -.+..+.+....+-...+ .|... .-.|+.|
T Consensus 304 lr~~d~vARlGGDEFvvLl~~~~~~~-~~~~a~ril~~l~~P~~i~~~~v~vsaSIGIa~~p--~~~~~----~~~Ll~~ 376 (663)
T PRK10060 304 LEEDQTLARLGGDEFLVLASHTSQAA-LEAMASRILTRLRLPFRIGLIEVYTGCSIGIALSP--EHGDD----SESLIRS 376 (663)
T ss_pred CCCCCEEEECCCCEEEEEECCCCHHH-HHHHHHHHHHHHCCCEEECCEEEEEEEEEEEEECC--CCCCC----HHHHHHH
T ss_conf 89988998548978999977899899-99999999998506879999999998899999807--99999----9999999
Q ss_pred HHHH---HCCCCCCEEEEEEEECCCCCCCCCC-----CCCCCC--------------CCE----EEEEEE--ECCCCCCH
Q ss_conf 2765---2067885799999850421012245-----566788--------------978----999999--78866884
Q gi|254780450|r 544 AHHA---IMLKESGSLTVRTRNIPSTEIHTFN-----YSDLPT--------------KDM----VLVEVE--DTGIGMSP 595 (803)
Q Consensus 544 A~~A---~~~~~~G~v~i~~~~~~~~~~~~~~-----~~~~~~--------------~~~----v~i~V~--D~G~GI~~ 595 (803)
|--| -|..+++.+.+-..........+.. ...... |.. +.+.-. +-|. |+|
T Consensus 377 AD~Amy~AK~~Grn~~~~f~~~m~~~~~~~~~le~~Lr~Al~~~ef~l~YQPivdl~g~i~G~EALlRW~hp~~G~-I~P 455 (663)
T PRK10060 377 ADTAMYTAKEGGRGQFCVFSPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPERGL-IPP 455 (663)
T ss_pred HHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCC-CCH
T ss_conf 9999999997089981662889999999999999999999976987999864772899889999999887799992-898
Q ss_pred HHHHHCCCCCCCCCCCCCCCCC----HHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4542023222210135776530----388999998516754999961889429999943757664433333322223544
Q gi|254780450|r 596 DIMEKIFEPFFTTKKVGEGTGL----GLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQESHYSHDIAIIPQ 671 (803)
Q Consensus 596 ~~~~~iFepF~ttk~~g~GtGL----GL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~~~~~~~~~~~~~~~~~ 671 (803)
.. |=|. .+.+|| |..+.+..++...- | ...|.+-.+.|-+.........-...-........
T Consensus 456 ~~----FIp~------AE~~GLi~~Lg~wVl~~A~~q~~~--w--~~~g~~~~vsVNlS~~ql~~~~f~~~l~~~L~~~~ 521 (663)
T PRK10060 456 LE----FISY------AEESGLIVPLGRWVILDVVRQAAK--W--RDKGINLRVAVNVSARQLADQTIFTALKQVLQELN 521 (663)
T ss_pred HH----HHHH------HHHCCCHHHHHHHHHHHHHHHHHH--H--HHCCCCCEEEEEECHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99----9999------987797899999999999999999--9--86699864899917899488359999999999829
Q ss_pred CCCCCCCC-CCCEEEEECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCCCEEEEECCC-CCC----CHH
Q ss_conf 44533347-875699976988999999999998898999--9899899989998659995489985878-898----889
Q gi|254780450|r 672 EEPADLTG-NSAIVLLVEDEDSVRRGSKRMLETRGYTVH--EAFSGTDALKVMEKLQGRVDIVISDVVM-PEM----DGP 743 (803)
Q Consensus 672 ~~~~~~~~-~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~--~a~~g~eal~~~~~~~~~~dlil~D~~m-p~m----~G~ 743 (803)
..|..+.- -...++ ++|...+...+ ..|+.+|+.+. -..+|--.|..++.. ++|.|=.|-.. -++ ...
T Consensus 522 l~p~~L~lEITEs~l-~~d~~~~~~~l-~~Lr~lGv~iALDDFGTGySSLsyL~~l--Pvd~lKIDrsFV~~i~~d~~~~ 597 (663)
T PRK10060 522 FEYCPIDVELTESCL-IENEELALSVI-QQFSQLGAQVHLDDFGTGYSSLSQLARF--PIDAIKLDQSFVRDIHKQPVSQ 597 (663)
T ss_pred CCCCEEEEEEECCCH-HCCHHHHHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHC--CCCEEEECHHHHHCCCCCCCHH
T ss_conf 982469999818612-23999999999-9999789989998999973369998428--9998999989971604892279
Q ss_pred HHHHHHHHHCC--CCCEEEEECCCHHHHHHHHHHCCCC---E-EEECCCCHHHHHHHHHHH
Q ss_conf 99999998689--9829999067858998767605798---0-750797999999999998
Q gi|254780450|r 744 TLLRELRKTYP--SLKFIFISGYAEDAFSKNLPKDAKF---S-FLSKPFSLKQLATSVHEL 798 (803)
Q Consensus 744 ~~~~~ir~~~~--~~~ii~~t~~~~~~~~~~~~~~~~~---~-~l~KP~~~~~L~~~i~~~ 798 (803)
.+.+.|-.+.. ++++|+ -|--..+..+.+...+.. | |++||+..+++.+=++++
T Consensus 598 aIV~aIi~LA~~Lgl~vVA-EGVEt~eQ~~~L~~lGcd~~QGy~fsrPmPa~ef~~wL~~~ 657 (663)
T PRK10060 598 SLVRAIVAVAQALNLQVIA-EGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRY 657 (663)
T ss_pred HHHHHHHHHHHHCCCEEEE-ECCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999999986998999-13864999999997599998267536089999999999974
No 118
>PRK03660 anti-sigma F factor; Provisional
Probab=99.52 E-value=2.2e-13 Score=112.22 Aligned_cols=102 Identities=25% Similarity=0.392 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHHH-HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC
Q ss_conf 71699999999874227-65206788579999985042101224556678897899999978866884454202322221
Q gi|254780450|r 529 DLSQFEQVLVNLCVNAH-HAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT 607 (803)
Q Consensus 529 D~~~l~qvl~NLl~NA~-~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t 607 (803)
|-..+.-++...++||. ||.+...+|.|.|.+.. .++.+.|+|+|+|+||++ .+..|+||+|
T Consensus 36 ~~~di~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~---------------~~~~l~I~V~D~G~Gid~--~~~~~~P~~t 98 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGIVYIEAEI---------------EDEELEITVRDEGKGIED--VEEARQPLFT 98 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE---------------ECCEEEEEEEECCCCCCC--HHHCCCCCCC
T ss_conf 99999999999999999860367999279999998---------------099999999973789473--7664388776
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 01357765303889999985167549999618894299999437
Q gi|254780450|r 608 TKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 608 tk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
++..++++||||+++++|+ .+++++|.+|+|||++++-..
T Consensus 99 ~~~~~~~~GlGl~li~~Lm----DeVei~s~~g~GTtV~m~k~l 138 (146)
T PRK03660 99 TKPELERSGMGFTFMESFM----DEVEVESEPGKGTTIRMKKKL 138 (146)
T ss_pred CCCCCCCCCHHHHHHHHHC----CEEEEEECCCCCEEEEEEEEE
T ss_conf 6876675640589999838----869999559997899999997
No 119
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.47 E-value=1.5e-12 Score=106.41 Aligned_cols=102 Identities=28% Similarity=0.437 Sum_probs=85.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC-CE-EEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 69997698899999999999889-89-99989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRG-YT-VHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g-~~-v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+||||||...+|.+++++|...| .+ |-+|.||.+|++++.+. .+|+|+||+.||.|||.++++.|-+. ..+|||+
T Consensus 3 rVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~--~PDVi~ld~emp~mdgl~~l~~im~~-~p~pVim 79 (350)
T COG2201 3 RVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKL--KPDVITLDVEMPVMDGLEALRKIMRL-RPLPVIM 79 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHCC-CCCCEEE
T ss_conf 79998581999999999983089737997337879999999722--99789972566445479999998447-9986899
Q ss_pred EECCCHHH--HHHHHHHCCCCEEEECCCC
Q ss_conf 90678589--9876760579807507979
Q gi|254780450|r 761 ISGYAEDA--FSKNLPKDAKFSFLSKPFS 787 (803)
Q Consensus 761 ~t~~~~~~--~~~~~~~~~~~~~l~KP~~ 787 (803)
+|...+.. ..-.....+..+|+.||..
T Consensus 80 vsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 80 VSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EECCCCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 95145213799999984574213217876
No 120
>PRK13559 hypothetical protein; Provisional
Probab=99.45 E-value=1.5e-11 Score=99.28 Aligned_cols=119 Identities=19% Similarity=0.169 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHCCCEEEEECC---CCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 1189999998524980999959---9938981066886709995673156110002787616789999999832432320
Q gi|254780450|r 24 PKIPLETIFMDSEPEGILITNE---RGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSE 100 (803)
Q Consensus 24 ~~~~~~r~lld~~~d~i~v~D~---~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 100 (803)
.+..++...++....+++++|+ |.-|+|+|++|++|+||+.++.+|...+++.++......+.++..+++.+.+...
T Consensus 42 ~~~~~~~~a~~~~r~a~~itd~~~~d~PIiy~N~aF~~lTGYs~~EviGrncrfLqGp~t~~~~v~~ir~ai~~~~~~~~ 121 (363)
T PRK13559 42 ASGRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAGTDPAAVAKIRAAIAAERVVVV 121 (363)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCEEEECHHHHHHHCCCHHHHCCCCCHHCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 43147999997477438996899999988998879997639897998499924108999998999999999983994699
Q ss_pred EEEEEECCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHH
Q ss_conf 3898601000048986799999999998237880699999997833889
Q gi|254780450|r 101 EFRLMQSLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSER 149 (803)
Q Consensus 101 e~~~~~~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k 149 (803)
+ +.++++||.++|..+..+|+... .|....++....|||+.+
T Consensus 122 e------l~nyrKDGs~fwn~l~isPV~D~-~G~v~~fig~q~DvTd~~ 163 (363)
T PRK13559 122 E------LLNYRKDGSPFWNALHLGPIYDE-DGKLLYFFGSQWDVTDIR 163 (363)
T ss_pred E------EEEECCCCCEEEEEEEEEEEECC-CCCEEEEEEEEEEECCCC
T ss_conf 9------99982699824776898887989-997999999998515542
No 121
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.42 E-value=3.5e-12 Score=103.83 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=88.7
Q ss_pred HHHHHHHHHC-C----CE-EEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHH
Q ss_conf 9999999988-9----89-9998998999899986599954899858788988899999999868998299990678589
Q gi|254780450|r 695 RGSKRMLETR-G----YT-VHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDA 768 (803)
Q Consensus 695 ~~~~~~L~~~-g----~~-v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~~~ 768 (803)
..++.+|+.. + .+ |-+++||+||+..+... .+|++|||+.||+|||++++++|++.+|+++||++|.|.+++
T Consensus 4 ~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~~--~v~~~LmDi~mP~~dGL~~~~~L~r~~P~vriLVLTm~d~e~ 81 (205)
T PRK11475 4 IGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISFS--AVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEA 81 (205)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCC--CCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 889999841899834899950545699998628866--643898538999976699999999978997189997476879
Q ss_pred -HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf -9876760579807507979999999999985137
Q gi|254780450|r 769 -FSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 769 -~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
..+.+..++..+|+.|-...++|.+++..++++.
T Consensus 82 ~v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~g~ 116 (205)
T PRK11475 82 RLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGV 116 (205)
T ss_pred HHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 99999998416688856788999999999987061
No 122
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=99.39 E-value=6.8e-11 Score=94.70 Aligned_cols=184 Identities=22% Similarity=0.348 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 03425664158999999999985079984788889999999888876430045421200584358534678999999998
Q gi|254780450|r 425 GGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQ 504 (803)
Q Consensus 425 a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~ 504 (803)
-...|.+.|-|+.|..+++.- ++ +.+.++. ..+..+.+ .++++... ...+.+-..=+...+.
T Consensus 264 qi~pHfL~NtL~~I~~~~~~~-------~~--~~~~~~v---~~l~~llR--~~l~~~~~----~~~l~~E~~~~~kyl~ 325 (456)
T COG2972 264 QINPHFLYNTLETIRMLAEED-------DP--EEAAKVV---KALSKLLR--YSLSNLDN----IVTLEIELLLIEKYLE 325 (456)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-------CH--HHHHHHH---HHHHHHHH--HHHHCCCC----CCCHHHHHHHHHHHHH
T ss_conf 126168999999999998735-------79--9999999---99999999--75006555----3419999999999999
Q ss_pred -HHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHH-HHHC-CCCCCEEEEEEEECCCCCCCCCCCCCCCCCCE
Q ss_conf -75035681699981489722699871699999999874227-6520-67885799999850421012245566788978
Q gi|254780450|r 505 -KLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAH-HAIM-LKESGSLTVRTRNIPSTEIHTFNYSDLPTKDM 581 (803)
Q Consensus 505 -~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~-~A~~-~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~ 581 (803)
+...=+.++++..+.+..+.. ..||. -+|.+|+.||. ++++ ..++|+|.|.... ..++
T Consensus 326 iq~~r~~~~le~~~~i~~~~~~-l~~p~---l~lqpLvENAi~hgi~~~~~~~~I~i~~~~---------------~~~~ 386 (456)
T COG2972 326 IQKLRIGDRLEVPLPIDEELEP-LIDPK---LVLQPLVENAIEHGIEPKRPGGSIAISAKK---------------QDDV 386 (456)
T ss_pred HHHCCCCEEEEEEECCCCCCCC-CCCHH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEEC---------------CCCE
T ss_conf 9981998799997203753320-23278---898887999999862046999579999940---------------5879
Q ss_pred EEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHCCCCE--EEEEECCCCCEEEEEEECCC
Q ss_conf 999999788668844542023222210135776-530388999998516754--99996188942999994375
Q gi|254780450|r 582 VLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEG-TGLGLSVVYGIIRQSGGY--ILPESEVGKGTIFRIFLPRY 652 (803)
Q Consensus 582 v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~G-tGLGL~i~~~iv~~~gG~--i~v~S~~g~Gt~F~i~lP~~ 652 (803)
+.++|+|||+||+++....+ .++. ++ .|+||+=++.+.+.+-|. +.++|.+|+||+..+.+|..
T Consensus 387 i~i~i~Dng~g~~~~~~~~~-----~~~~--~~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 387 IQISISDNGPGIDEEKLEGL-----STKG--ENRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred EEEEECCCCCCCCHHHHHHH-----HHCC--CCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEHH
T ss_conf 99997769999587888667-----6415--7777735887999998718976217999648958999998630
No 123
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=99.39 E-value=1.8e-11 Score=98.82 Aligned_cols=357 Identities=14% Similarity=0.104 Sum_probs=193.7
Q ss_pred HHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCC-EEEEEEECCEE
Q ss_conf 98524980999959993898106688670999567315611000278761678999999983243232-03898601000
Q gi|254780450|r 32 FMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGS-EEFRLMQSLNN 110 (803)
Q Consensus 32 lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~e~~~~~~~~~ 110 (803)
++...+|--++.|.+|-+..+--.-..+.-....+..|+.+..+.. ++..+ +....+.++.+.+ ..+++....+.
T Consensus 1 l~~~~~Dv~L~~d~~Gvvre~~~~~~~~s~~~~~~W~G~~w~ei~~-~es~~---k~~~~l~~a~~~g~~a~r~~~~~~~ 76 (453)
T TIGR02040 1 LLEAAADVTLLLDAEGVVREVALSNDELSAEALSEWLGRRWEEIVT-EESKE---KVEALLSEAKRTGVGAVRVELNRFV 76 (453)
T ss_pred CCCCCCCCEEEECCCCCEEEEECCCCCCCHHHHCCCCCCCHHHHCC-HHHHH---HHHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf 9776477035551787077644288552414130245884444135-77899---9999997146888857777665411
Q ss_pred ECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEE---CHHHHH--------H---HHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 0489867999999999982378806999999978---338899--------9---9999999999999985259619999
Q gi|254780450|r 111 YSQNSEPHWYRLKARVLPISLHKEKLLYAWRITD---ITSERK--------D---QEKFFRELQNAIDYLDHSPVGFMSA 176 (803)
Q Consensus 111 ~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~D---IT~~k~--------~---ee~l~~~~~~~~~~le~a~~gi~~~ 176 (803)
...+.-..........+..++........+ +| |.+-++ . -.++++-+.+|+.+++-+.++|+++
T Consensus 77 -~P~~~ElP~~F~~~~L~~sdGk~~~vLa~G-rdLr~vA~lqq~lv~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv 154 (453)
T TIGR02040 77 -LPSDLELPMEFVLVRLGASDGKDEGVLALG-RDLRAVAELQQRLVEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLV 154 (453)
T ss_pred -CCCCCCCCEEEEEECCCCCCCCCCCEEEEC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf -799972440346761678788887358884-652478999999999987888879998667544433541148867998
Q ss_pred C-CCCCEEEEHHHHHHHCCCCHH---HHCCCCCCHHHHCCCHHHHHHHHHHHHH-CCCCEEEEEEEEEEEECCEEEEEEE
Q ss_conf 2-999689764679864299967---8045632188808820489999998620-0267148889999804897999999
Q gi|254780450|r 177 D-HQGKILYINATLAEWIGIDLT---TFTSKSISIGDITAGEGLALIQAIRTEP-SHQKITTLDLDLRRIDNGHGIPVKI 251 (803)
Q Consensus 177 D-~~g~i~~~N~~~~~llG~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~g~~~~v~~ 251 (803)
| .+++|+.+|+++..+||-... .++|.. +..-+...+.+.+....... ..+........+.....+. .+
T Consensus 155 ~~st~rileaN~~A~~lLg~~~~~rd~LvG~~--~~~e~~~~~~~~l~~~l~~~~atg~A~~~~i~l~~~~~~~----~v 228 (453)
T TIGR02040 155 DVSTGRILEANSAAAALLGAEGQRRDSLVGRE--FPQELEEREREELELLLREVRATGKAAEVRILLAESRKEL----LV 228 (453)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCH--HHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCE----EE
T ss_conf 53653477867999998502677501231113--4314664543689999986430157787178745788731----78
Q ss_pred EEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCC
Q ss_conf 55676538885547999998607899999999999999999983467509998502069983155444445488466179
Q gi|254780450|r 252 VHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTS 331 (803)
Q Consensus 252 ~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g 331 (803)
..++.+ .++...+.+ -+-.+.+....+... .....|..++++.||+|..+|.+|+|..+|.+|.++..-.+++.+.|
T Consensus 229 ~~s~~r-~~~~~~fL~-~l~~~~~~~~~~~~~-s~~sml~~l~~~~pDaiv~~D~~G~i~~aN~aFl~l~~~ss~~~v~G 305 (453)
T TIGR02040 229 VVSLFR-QDSESLFLV-RLSPAGASAAVGDVL-SENSMLAKLVEEAPDAIVVVDADGRIKRANEAFLELVEVSSKEAVRG 305 (453)
T ss_pred EEEEEE-CCCCCHHHE-EECCCCCCCCCCCCC-CCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCHHHHCC
T ss_conf 877640-236641011-303112446777766-74278999997429879997788732888899998987177545313
Q ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 8666610111122024666655541123345404887388506899998730456677613899999850232112
Q gi|254780450|r 332 NDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKAL 407 (803)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~ 407 (803)
+++.+++.-.... ..-+-..+...+...-+-..+...-|....+.+++.....++.+ ..+.+.+||+.+-..
T Consensus 306 ~~L~~wL~R~~vD--L~Vll~nl~~~G~vrLyAt~L~~~~Ga~~~vEISAa~~~~~~~P--~lvl~iRdisRrl~~ 377 (453)
T TIGR02040 306 RTLDRWLGRSGVD--LAVLLSNLRRTGQVRLYATTLKGELGAETEVEISAAAVDQGERP--KLVLVIRDISRRLTM 377 (453)
T ss_pred CCHHHHHCCCCHH--HHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC--EEEEEEECHHHHCCC
T ss_conf 3235541677533--89877624216853676311002435303687787874389983--699987012343024
No 124
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.39 E-value=2.8e-12 Score=104.49 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=59.9
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 99999985249809999599938981066886709995673156110002787616789999999832432320389860
Q gi|254780450|r 27 PLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQ 106 (803)
Q Consensus 27 ~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~ 106 (803)
+++|+++|++|++|+++|.+|+|+|+|+++++++||+.++.+|.....+..+++.......+......+.... ..
T Consensus 1 er~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 75 (112)
T pfam00989 1 EDLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKSLLDLIPEEDDAEVAELLRQALLQGEESR-----GG 75 (112)
T ss_pred CHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE-----EE
T ss_conf 9799999834246199989999999916533225863667437520124575343999999999998199768-----87
Q ss_pred CCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 100004898679999999999823788069999999783
Q gi|254780450|r 107 SLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDI 145 (803)
Q Consensus 107 ~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DI 145 (803)
......++|..+|+.++.++....+ +...++.+++||
T Consensus 76 e~~~~~~dG~~~~~~~~~~pi~d~~--g~~g~v~i~rDI 112 (112)
T pfam00989 76 EVSFRVPDGRPRHVEVRASPVRDAG--GEIGFLGVLRDI 112 (112)
T ss_pred EEEEECCCCCEEEEEEEEEEEECCC--CCEEEEEEEECC
T ss_conf 7652879998999999999999199--999999999849
No 125
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.36 E-value=2.9e-12 Score=104.36 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=108.6
Q ss_pred HHHHHHHHHHCCCEEEEEC---CCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999852596199992---9996897646798642999678045632188808820489999998620026714888
Q gi|254780450|r 159 LQNAIDYLDHSPVGFMSAD---HQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLD 235 (803)
Q Consensus 159 ~~~~~~~le~a~~gi~~~D---~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 235 (803)
++.....+|.+|+||...| ++..++|+|.+|.+++||+..++++....|..- ..-.+..+...+.....+.....+
T Consensus 157 ~~~~~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eitGy~~~e~~g~~~r~lq~-~~~~~e~~~~~~~ai~~~~~~~ve 235 (674)
T PRK13558 157 RRLKEQALDEAPIGITISDATDPEEPIIYINDSFEDITGYSPDEVVGANHRFLQG-PKTNEDRVAEFWTAITEDHDTQVV 235 (674)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCC-CCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 9988756640572599846888887438860123653189817864974012106-888805799999997558863345
Q ss_pred EEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999804897999999556765388855479999986078999999999999999999834
Q gi|254780450|r 236 LDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNN 296 (803)
Q Consensus 236 ~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~ 296 (803)
.+..++ +|..+|......++++.+|....++++..|+|+||++|++|+...+.+.++++-
T Consensus 236 ~r~~r~-dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~~~~l~~~L~R 295 (674)
T PRK13558 236 LRNYRR-DGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGERQSLDRLLDR 295 (674)
T ss_pred EEEECC-CCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 333146-883787412455210578858999862144778899999999868899999999
No 126
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.35 E-value=3.8e-11 Score=96.46 Aligned_cols=121 Identities=8% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHCCCCEEEEEE---ECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 999834675099985---020699831554444454884661798666610111-1220246666555411233454048
Q gi|254780450|r 291 NRFFNNIPMAIASID---KKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKN-EKRKIIAALYDANDQKSDISPIDSP 366 (803)
Q Consensus 291 ~~i~e~~p~~I~~~d---~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~ 366 (803)
.+.++.+|.+|...| ++..++|+|.+|.++. ||...+++|++..-+-.+. +...+.+ +..++... ....++.+
T Consensus 161 ~ra~d~a~v~i~~a~~~~p~~~i~~~n~a~~eit-Gy~~~e~~g~~~r~lq~~~~~~e~~~~-~~~ai~~~-~~~~ve~r 237 (674)
T PRK13558 161 EQALDEAPIGITISDATDPEEPIIYINDSFEDIT-GYSPDEVVGANHRFLQGPKTNEDRVAE-FWTAITED-HDTQVVLR 237 (674)
T ss_pred HHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHC-CCCHHHHCCCCHHHHCCCCCCHHHHHH-HHHHHHCC-CCCEEEEE
T ss_conf 7566405725998468888874388601236531-898178649740121068888057999-99997558-86334533
Q ss_pred EECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 873885068999987304566776138999998502321122101234
Q gi|254780450|r 367 HPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQT 414 (803)
Q Consensus 367 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~L~qa 414 (803)
..+.+|..+|......+.++.+|.....+++..||||||+.|++|++.
T Consensus 238 ~~r~dG~~~w~~~~i~pi~Dedg~v~~~Vg~~~DiteRke~E~~L~~~ 285 (674)
T PRK13558 238 NYRRDGSLFWNQVDISPIYDEDGTVSHYVGFQMDVSERMAAQQELQGE 285 (674)
T ss_pred EECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 314688378741245521057885899986214477889999999986
No 127
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.33 E-value=1.7e-09 Score=84.83 Aligned_cols=189 Identities=18% Similarity=0.244 Sum_probs=117.7
Q ss_pred HH-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 56-64158999999999985079984788889999999888876430045421200584358534678999999998750
Q gi|254780450|r 429 HD-FNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLI 507 (803)
Q Consensus 429 He-lr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~~~~ 507 (803)
|| |.+.|-+..-..++......+ ++. .-...|.++++++..-|+.+.-+| ..++|..+|=--+-..+..+++..
T Consensus 259 HDGIsQ~LVs~k~~lela~~ql~~-p~~-~a~~aieKaa~aL~~Ai~EVRRiS--H~LRP~~LDDLGL~aALe~L~~~f- 333 (459)
T COG4564 259 HDGISQNLVSVKCALELAARQLNP-PKG-GAHPAIEKAADALNGAIKEVRRIS--HDLRPRALDDLGLTAALEALLEDF- 333 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC-CCC-CCCHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_conf 500777779999999999626779-988-875015667899998999999850--235745554430799999999986-
Q ss_pred CCCCCEEEEEECCCCCEE-EEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 356816999814897226-9987169999999987422765206788579999985042101224556678897899999
Q gi|254780450|r 508 SEPPQVKLTVDYERDLWG-VKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEV 586 (803)
Q Consensus 508 ~~~~~i~~~~~~~~~~~~-v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V 586 (803)
.+...+++.+.....+.. ...-.+-|-+|...-++| .-+..+.-.|+|...+ .++.|++.|
T Consensus 334 ~~~tg~~itle~~~~p~~l~~e~~talyRv~QEaltN---IErHa~Atrv~ill~~---------------~~d~vql~v 395 (459)
T COG4564 334 KERTGIEITLEFDTQPGKLKPEVATALYRVVQEALTN---IERHAGATRVTILLQQ---------------MGDMVQLMV 395 (459)
T ss_pred HHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH---HHHHCCCEEEEEEECC---------------CCCCEEEEE
T ss_conf 4366837999705786447827888999999999877---8860687179998615---------------776069998
Q ss_pred EECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCC
Q ss_conf 9788668844542023222210135776530388999998516754999961889429999943757
Q gi|254780450|r 587 EDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYV 653 (803)
Q Consensus 587 ~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~ 653 (803)
+|||+|++..... . +-.||||--.++-+...||+..|+|.| +||..++.||...
T Consensus 396 rDnG~GF~~~~~~----------~--~~~GiGLRNMrERma~~GG~~~v~s~p-~GTel~v~Lp~~~ 449 (459)
T COG4564 396 RDNGVGFSVKEAL----------Q--KRHGIGLRNMRERMAHFGGELEVESSP-QGTELTVLLPLDA 449 (459)
T ss_pred ECCCCCCCCHHHC----------C--CCCCCCCCCHHHHHHHHCCEEEEEECC-CCCEEEEEECCHH
T ss_conf 2389985616531----------6--755645100999999748658997569-8727999814046
No 128
>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.32 E-value=3.2e-11 Score=96.99 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=55.0
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHH-HHHHHHCCC-CEEEEEEEE
Q ss_conf 999998525961999929996897646798642999678045632188808820489999-998620026-714888999
Q gi|254780450|r 161 NAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQ-AIRTEPSHQ-KITTLDLDL 238 (803)
Q Consensus 161 ~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~ 238 (803)
+|+.+++++|++++.+|++|+++|+|+++++++||+.+++.++. +.+++++++..... ........+ ....++.++
T Consensus 2 r~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 79 (112)
T pfam00989 2 DLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKS--LLDLIPEEDDAEVAELLRQALLQGEESRGGEVSF 79 (112)
T ss_pred HHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 79999983424619998999999991653322586366743752--0124575343999999999998199768877652
Q ss_pred EEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 98048979999995567653888554799999860
Q gi|254780450|r 239 RRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSR 273 (803)
Q Consensus 239 ~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Di 273 (803)
.++ +|..+|+.+...++.+.+|.. ++++++.||
T Consensus 80 ~~~-dG~~~~~~~~~~pi~d~~g~~-g~v~i~rDI 112 (112)
T pfam00989 80 RVP-DGRPRHVEVRASPVRDAGGEI-GFLGVLRDI 112 (112)
T ss_pred ECC-CCCEEEEEEEEEEEECCCCCE-EEEEEEECC
T ss_conf 879-998999999999999199999-999999849
No 129
>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.31 E-value=5.7e-12 Score=102.29 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=40.3
Q ss_pred HHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEE
Q ss_conf 52596199992999689764679864299967804563218880882048999999862002671488899998048979
Q gi|254780450|r 167 DHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDNGHG 246 (803)
Q Consensus 167 e~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~ 246 (803)
|++|++|+.+|.+|+++++|+++++++|++.++++++ ++.++++++..+.+.....+...+.....+.... ..+|..
T Consensus 2 d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~ 78 (110)
T pfam08448 2 DSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGK--TLAELLPPEDAARLERALRRALEGEEPIDFLEEL-LLNGEE 78 (110)
T ss_pred CCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCC--CCHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCC
T ss_conf 9857353799499969999347466709898998095--1210068034566777899997389558866430-258852
Q ss_pred EEEEEEEEEEECCCCCEEEEEEEEEEHHHHH
Q ss_conf 9999955676538885547999998607899
Q gi|254780450|r 247 IPVKIVHHILASCDGKPGESRTVVVSRKNCD 277 (803)
Q Consensus 247 ~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k 277 (803)
.|+.+...++.+.+|+..++++++.|||+||
T Consensus 79 ~~~~~~~~pi~d~~G~~~g~v~~~~DITerK 109 (110)
T pfam08448 79 RHYELRLTPLRDPDGEVIGVLVISRDITERR 109 (110)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEEEECCHHC
T ss_conf 0004357668989999999999999883312
No 130
>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=99.30 E-value=2.7e-11 Score=97.58 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHH
Q ss_conf 85249809999599938981066886709995673156110
Q gi|254780450|r 33 MDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLES 73 (803)
Q Consensus 33 ld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~ 73 (803)
+|++|++|+++|.+|+|+|+|++|++++|++.++.+|....
T Consensus 1 ~d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~~~~ 41 (110)
T pfam08448 1 LDSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGKTLA 41 (110)
T ss_pred CCCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCCH
T ss_conf 99857353799499969999347466709898998095121
No 131
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.29 E-value=2.4e-09 Score=83.80 Aligned_cols=187 Identities=19% Similarity=0.227 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHHHHHHH----HHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH
Q ss_conf 0342566415899999999----99850799847--88889999999888876430045421200584358534678999
Q gi|254780450|r 425 GGIAHDFNNVLTAILLSSD----HLLLQSRSSDA--SFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGN 498 (803)
Q Consensus 425 a~isHelr~pL~~I~g~~~----ll~~~~~~~~~--~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~ 498 (803)
+.|+-|+.--+.-.+.|.. +|....+..++ ..+-+..|.+..+-.=.-++.+|.--|.. .+--++...+.+
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRlt---L~e~~L~~AL~~ 450 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRLT---LQEAELPPALEQ 450 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCHHHHHHH
T ss_conf 99999877899999999999999998427865668799999999999999999999999987876---056763899999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCEEEEEC-HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 9999987503568169998148972269987-169999999987422765206788579999985042101224556678
Q gi|254780450|r 499 LRMMIQKLISEPPQVKLTVDYERDLWGVKTD-LSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLP 577 (803)
Q Consensus 499 ~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D-~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~ 577 (803)
+..-+... .+..+++++..+... +.++ ...+-||+..=++| |+|...+.+|.|.+..-
T Consensus 451 ~~~~f~~q--tg~~~~l~~qlp~~~--lpa~qqvHlLqIvREAlsN---a~KHa~As~i~V~~~~~-------------- 509 (574)
T COG3850 451 MLAEFSNQ--TGITVTLDYQLPPRA--LPAHQQVHLLQIVREALSN---AIKHAQASEIKVTVSQN-------------- 509 (574)
T ss_pred HHHHHHHC--CCCEEEEECCCCCCC--CCHHHHHHHHHHHHHHHHH---HHHHCCCCEEEEEEEEC--------------
T ss_conf 99999734--697388725689889--9878999999999999998---99852667589999865--------------
Q ss_pred CCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 8978999999788668844542023222210135776530388999998516754999961889429999943
Q gi|254780450|r 578 TKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 578 ~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
+ ..+.+.|+|||+|||+.. +. .| --||.|.+.-.+..||.+.+++.+|+||.+.+++|
T Consensus 510 ~-g~~~~~VeDnG~Gi~~~~------------e~-~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 510 D-GQVTLTVEDNGVGIDEAA------------EP-SG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred C-CEEEEEEEECCCCCCCCC------------CC-CC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEC
T ss_conf 9-648999942883779756------------77-88-72369999999972575777645999817999956
No 132
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.27 E-value=1.1e-09 Score=86.18 Aligned_cols=184 Identities=21% Similarity=0.271 Sum_probs=117.9
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE---HHHHHHH
Q ss_conf 7630342566415899999999998507998478888999999988887643004542120058435853---4678999
Q gi|254780450|r 422 TLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLN---LTEVIGN 498 (803)
Q Consensus 422 ~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~---l~~~i~~ 498 (803)
+.+.....||.+..++|.-.+.++.+ ....+........|++-+.|.-+-++++|. .++|..+| +.+.+..
T Consensus 305 ~vARELHDeIGQnITAIr~Qa~ivkR-~~~~~q~kqaas~Ie~LslrI~~svrqLL~-----rLRP~~LDdL~l~qai~~ 378 (497)
T COG3851 305 DVARELHDEIGQNITAIRTQAGIVKR-AADNAQVKQAASLIEQLSLRIYDSVRQLLG-----RLRPRQLDDLTLEQAIRS 378 (497)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCCCCCCCHHHHHHH
T ss_conf 99999899864607899999999986-579777887889999999899999999987-----159732222578999999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCEEEEECH---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 99999875035681699981489722699871---699999999874227652067885799999850421012245566
Q gi|254780450|r 499 LRMMIQKLISEPPQVKLTVDYERDLWGVKTDL---SQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSD 575 (803)
Q Consensus 499 ~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~---~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~ 575 (803)
+...++ ..+++ +.+.++...+. -.-|+ .-|-++...+++| .+|..+...|+|....
T Consensus 379 l~~Em~-~~erg--ihcq~~~~~n~--~~ldet~rvTLyRl~QE~LNN---I~KHA~AS~V~i~l~~------------- 437 (497)
T COG3851 379 LLREME-LEERG--IHCQLDWRINE--TALDETQRVTLYRLCQELLNN---ICKHADASAVTIQLWQ------------- 437 (497)
T ss_pred HHHHHH-HHHCC--EEEEEECCCCC--CCCCCCEEEEHHHHHHHHHHH---HHHCCCCCEEEEEEEE-------------
T ss_conf 999852-54456--27987056676--678854377289999999999---9750022627999951-------------
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 7889789999997886688445420232222101357765303889999985167549999618894299999437
Q gi|254780450|r 576 LPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPR 651 (803)
Q Consensus 576 ~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~ 651 (803)
.++.+.++|+|+|+|+|+.. +=+|+||.=.++-|...||++..+|. .||...|.||.
T Consensus 438 --~~e~l~Lei~DdG~Gl~~~~---------------~v~G~Gl~GmrERVsaLGG~l~lssq--~GTrviVnLPq 494 (497)
T COG3851 438 --QDERLMLEIEDDGSGLPPGS---------------GVQGFGLTGMRERVSALGGTLTLSSQ--HGTRVIVNLPQ 494 (497)
T ss_pred --CCCEEEEEEECCCCCCCCCC---------------CCCCCCCCHHHHHHHHHCCCEEEEEC--CCCEEEEECCH
T ss_conf --78189999825886789999---------------85675720089999974782588743--68589994603
No 133
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.26 E-value=1.2e-10 Score=93.08 Aligned_cols=117 Identities=24% Similarity=0.324 Sum_probs=97.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 875699976988999999999998898999-9899899989998659995489985878898889999999986899829
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKF 758 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~i 758 (803)
...+||++||++..+..+...|...||+++ ++.++.++.+....+ ++|+|++|+.||.-| ....-.+....+.-||
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~--~pDvVildie~p~rd-~~e~~~~~~~~~~~pi 80 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERL--QPDVVILDIEMPRRD-IIEALLLASENVARPI 80 (194)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHC--CCCEEEEECCCCCCC-HHHHHHHHHCCCCCCE
T ss_conf 6653034241135556789899875973876541344750677852--998799966787732-8999898605899878
Q ss_pred EEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 99906785899876760579807507979999999999985
Q gi|254780450|r 759 IFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELL 799 (803)
Q Consensus 759 i~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L 799 (803)
|++|+|+..+.-+...+.|..+|+.||++...|...+.-+.
T Consensus 81 v~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 81 VALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred EEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 99971678589999997387498834765421047999999
No 134
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.18 E-value=6.9e-09 Score=80.58 Aligned_cols=128 Identities=9% Similarity=0.077 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHH-HHHHHHHHHCCCCEEE
Q ss_conf 999999999998525961999929996897646798642999678045632188808820489-9999986200267148
Q gi|254780450|r 155 FFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLA-LIQAIRTEPSHQKITT 233 (803)
Q Consensus 155 l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 233 (803)
+.+.......+++++.+|++.+|.+|+++.+|++++++|||+.+++.+.. +.+++++.+.. .+........ ....
T Consensus 256 L~~~~~~~e~IL~sm~dGVIaiD~~G~I~~~N~~A~~llg~~~~e~ig~~--~~~l~~~~~~~~~~~~~l~~~~--~~~~ 331 (607)
T PRK11360 256 LREARTLNELIIENAADGIIAIDRQGDITTMNPAAEVITGYQRHELVGQP--YSMLFDNTQFYSPVLDTLEHGT--EHVA 331 (607)
T ss_pred HHHHHHHHHHHHHHHCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHHCCCHHHHHHHHHHHHCCC--CCCC
T ss_conf 99999989999861046699997999499983899998587978985967--9995795767799999985377--4212
Q ss_pred EEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 8899998048979999995567653888554799999860789999999999999
Q gi|254780450|r 234 LDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANM 288 (803)
Q Consensus 234 ~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~ 288 (803)
.+..+.. .+..+++....+++.+.+|...+.+.++.|+|++|+.|+++++++.
T Consensus 332 ~~~~~~~--~~~~~~l~~~~s~~~~~~g~~~G~v~~~~DiTe~~~le~~l~~~er 384 (607)
T PRK11360 332 LEISFPG--RDRTIELSVTTSRLHDTHGEMIGAVVIFSDLTARKRLQRRMARAER 384 (607)
T ss_pred EEEEECC--CCCEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 4899605--8834999999853576898588999999957789999999999999
No 135
>TIGR00229 sensory_box PAS domain S-box; InterPro: IPR000014 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0004871 signal transducer activity, 0007165 signal transduction.
Probab=99.16 E-value=1.4e-10 Score=92.46 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 11899999985249809999599938981066886709995673156110002787616789999999832432320389
Q gi|254780450|r 24 PKIPLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFR 103 (803)
Q Consensus 24 ~~~~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 103 (803)
+++++++++++++++++++.|.+|.++++|+++++++||+.++..|.....+..+++..............+... ...
T Consensus 2 ~~e~~~~~~~e~~~~~~~~~d~~g~~~~~n~~~~~~~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 79 (130)
T TIGR00229 2 ESEERYRAIFESSPDAIIVVDLEGNILYVNPAFEELFGYSAEELLGRNVLELIPEEDREELRERIERLLETGERE--PVS 79 (130)
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC--CCE
T ss_conf 158999998622454268870576157503257776178758953875100027641468999998763267543--201
Q ss_pred EEECCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHH
Q ss_conf 860100004898679999999999823788069999999783388999999
Q gi|254780450|r 104 LMQSLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSERKDQEK 154 (803)
Q Consensus 104 ~~~~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~ 154 (803)
........+++|..+|+.+...+.... .++...+...++|||+++..++.
T Consensus 80 ~~~~~~~~~~~G~~~~~~~~~~~~~~~-~g~~~~~~~~~~d~t~~~~~~~~ 129 (130)
T TIGR00229 80 EERRVLGRRKDGSEIWVEVSVSPIRDS-NGGVLGVLGIVRDITERKEAEEA 129 (130)
T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCC-CCCEEEEEEEEECHHHHHHHHHC
T ss_conf 234666443789688998730100001-37703677665211478998850
No 136
>TIGR00229 sensory_box PAS domain S-box; InterPro: IPR000014 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs . In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand . Probably the most surprising identification of a PAS domain was that in EAG-like K^+-channels . ; GO: 0004871 signal transducer activity, 0007165 signal transduction.
Probab=99.13 E-value=1.4e-09 Score=85.43 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCC-CCE--EE
Q ss_conf 999999999852596199992999689764679864299967804563218880882048999999862002-671--48
Q gi|254780450|r 157 RELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSH-QKI--TT 233 (803)
Q Consensus 157 ~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~ 233 (803)
+++++++.++++++++++..|.+|.++++|+++++++||+.+++.+... .+++++++............. +.. ..
T Consensus 2 ~~e~~~~~~~e~~~~~~~~~d~~g~~~~~n~~~~~~~Gy~~~e~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T TIGR00229 2 ESEERYRAIFESSPDAIIVVDLEGNILYVNPAFEELFGYSAEELLGRNV--LELIPEEDREELRERIERLLETGEREPVS 79 (130)
T ss_pred CHHHHHHHHHHCCCCCEEEEECCCCEEEECHHHHHHHCCCHHHHCCCCC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 1589999986224542688705761575032577761787589538751--00027641468999998763267543201
Q ss_pred EEEEE-EEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHH
Q ss_conf 88999-980489799999955676538885547999998607899999999
Q gi|254780450|r 234 LDLDL-RRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSG 283 (803)
Q Consensus 234 ~e~~~-~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l 283 (803)
....+ ...++|..+|+.+...++.+..|....+.+++.|+|+++++++++
T Consensus 80 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~~~~~~~d~t~~~~~~~~l 130 (130)
T TIGR00229 80 EERRVLGRRKDGSEIWVEVSVSPIRDSNGGVLGVLGIVRDITERKEAEEAL 130 (130)
T ss_pred EEEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHCC
T ss_conf 234666443789688998730100001377036776652114789988509
No 137
>pfam00512 HisKA His Kinase A (phosphoacceptor) domain. dimerization and phosphoacceptor domain of histidine kinases.
Probab=99.12 E-value=9.9e-11 Score=93.58 Aligned_cols=65 Identities=26% Similarity=0.250 Sum_probs=56.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 687630342566415899999999998507998478888999999988887643004542120058
Q gi|254780450|r 420 VGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM 485 (803)
Q Consensus 420 ~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~ 485 (803)
+.+|++++||||||||++|.|+++++... ...+...+++..|.++++|+..+|+++|+|||.+++
T Consensus 2 k~~f~~~isHelrtPL~~i~~~~~~l~~~-~~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~e~g 66 (66)
T pfam00512 2 KSEFLANLSHELRTPLTAIRGYLELLLDT-ELSEEQREYLETILRSAERLLRLINDLLDLSRIEAG 66 (66)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88999987298718488887488998872-327999999997689999999999999999865489
No 138
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.11 E-value=5.2e-10 Score=88.46 Aligned_cols=112 Identities=31% Similarity=0.529 Sum_probs=91.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 6999769889999999999988-98999-989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETR-GYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~-g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
.|+++||++..+.-+..++... ++++. .+.++.++++.++.. .+|++++|+.||+|+|.++++.|+...|..+|++
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivf 80 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAIVF 80 (244)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCC--CCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEE
T ss_conf 51771476767999999988744211113312303178887602--5776999723765244999998615698853999
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 90678589987676057980750797999999999998
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHEL 798 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~ 798 (803)
+|||.+-+... . +....+|+.||++.+.|...+...
T Consensus 81 vt~~~~~a~~a-f-ev~a~d~i~kp~~~~~l~~~l~~~ 116 (244)
T COG3279 81 VTAHDEYAVAA-F-EVEALDYLLKPISEERLAKTLERL 116 (244)
T ss_pred EEEHHHHHHHH-H-HHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98615432333-1-334667742854268999999998
No 139
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=99.07 E-value=3.6e-08 Score=75.53 Aligned_cols=157 Identities=25% Similarity=0.321 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--CCCCEEEEEHHHHHHHHHHHH--HHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHH
Q ss_conf 99988887643004542120--058435853467899999999--87503568169998148972269987169999999
Q gi|254780450|r 463 KHNANRAAILVRQLLAFSRK--QTMRLTVLNLTEVIGNLRMMI--QKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLV 538 (803)
Q Consensus 463 ~~~~~r~~~li~~lLd~sr~--~~~~~~~~~l~~~i~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~ 538 (803)
.++.+.+.+||-+|=.|-|. +.-+.+.+.+.+-++.+..-+ ++++- +.++.+.++.++.+-.+.. |.- +++
T Consensus 388 R~npdkAreLil~LS~yfR~NL~~~~~~~v~L~kEl~~v~AYl~IEkARF-~~rL~v~i~id~~l~~~~i-P~f---ilQ 462 (557)
T COG3275 388 RRNPDKARELILYLSTYFRYNLENNTQEIVTLSKELEHVNAYLSIEKARF-GDRLDVVIDIDEELRQVQI-PSF---ILQ 462 (557)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHCCC-CHH---HHH
T ss_conf 17827999999999999998734787158655999999999998998644-8844799946877753368-616---677
Q ss_pred HHHHHHH-HHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9874227-652067-88579999985042101224556678897899999978866884454202322221013577653
Q gi|254780450|r 539 NLCVNAH-HAIMLK-ESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTG 616 (803)
Q Consensus 539 NLl~NA~-~A~~~~-~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtG 616 (803)
-|+-||. |++..+ +.|.|+|+++..+. .+++.|+|||-||+|+. + .|+|
T Consensus 463 PLVENAIKHG~~~~~~~g~V~I~V~~~d~---------------~l~i~VeDng~li~p~~------------~--~g~g 513 (557)
T COG3275 463 PLVENAIKHGISQLKDTGRVTISVEKEDA---------------DLRIEVEDNGGLIQPDE------------E--DGTG 513 (557)
T ss_pred HHHHHHHHHCCCCHHCCCCEEEEEEEECC---------------EEEEEEECCCCCCCCCC------------C--CCCC
T ss_conf 88888887536444208817999998088---------------38999941887769977------------8--8987
Q ss_pred CHHHHHHHHHHCCCC---EEEEEECCCCCEEEEEEECCCC
Q ss_conf 038899999851675---4999961889429999943757
Q gi|254780450|r 617 LGLSVVYGIIRQSGG---YILPESEVGKGTIFRIFLPRYV 653 (803)
Q Consensus 617 LGL~i~~~iv~~~gG---~i~v~S~~g~Gt~F~i~lP~~~ 653 (803)
+||+.+++-++.+=| -+.++|.+-+||+++++||...
T Consensus 514 iGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp~~~ 553 (557)
T COG3275 514 IGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLPLQR 553 (557)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECCCC
T ss_conf 1788999999986482103137861677868999944765
No 140
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.00 E-value=1.6e-08 Score=78.06 Aligned_cols=119 Identities=12% Similarity=0.184 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHC-CCHHHHHHHHHHHHH
Q ss_conf 8999999999999999998525961999929996897646798642999678045632188808-820489999998620
Q gi|254780450|r 148 ERKDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDIT-AGEGLALIQAIRTEP 226 (803)
Q Consensus 148 ~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 226 (803)
.++.+..+....++++..++++|+|++++|.+|+|.++|++++++|||...+..+... ..++ +|+....+. ..
T Consensus 86 ~~~~~~~l~~~~~rfr~~~ealpDavvv~d~~g~I~~~N~aAe~l~G~~~~~~~G~~I--~~Lir~p~f~~~~~----~~ 159 (431)
T PRK11006 86 NKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGNIFWCNGLAQQLLGLRWPEDNGQNI--LNLLRYPEFTQYLK----TR 159 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHHCCCCHHHCCCCH--HHHHCCHHHHHHHH----CC
T ss_conf 7999999999999999999648976999989995883569999983899833269977--89808845999986----26
Q ss_pred CCCCEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHH
Q ss_conf 0267148889999804897999999556765388855479999986078999999999
Q gi|254780450|r 227 SHQKITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGT 284 (803)
Q Consensus 227 ~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~ 284 (803)
. ......+. ...+..+.+.+ .+. .+|. ...++.|+|++++.|+..+
T Consensus 160 -~---~~~p~~~~-~~~~~~le~~~--~p~--~~~~---~llv~rDiT~~~~lE~~R~ 205 (431)
T PRK11006 160 -D---FSRPLNLV-LNNGRHLEIRV--MPY--TEGQ---LLMVARDVTQMHQLEGARR 205 (431)
T ss_pred -C---CCCCEEEE-CCCCCEEEEEE--EEC--CCCC---EEEEEEECCHHHHHHHHHH
T ss_conf -6---55762554-38874799999--773--7995---8999985659999999999
No 141
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR; InterPro: IPR011785 This entry represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor . These proteins contain a Helix-Turn-Helix motif of the "fis" type..
Probab=98.99 E-value=1.4e-08 Score=78.50 Aligned_cols=165 Identities=14% Similarity=0.185 Sum_probs=68.4
Q ss_pred CHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEE--EECCEEEEEEEEEEEEECCCCCEEEEEEEEEEH----------
Q ss_conf 18880882048999999862002671488899998--048979999995567653888554799999860----------
Q gi|254780450|r 206 SIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRR--IDNGHGIPVKIVHHILASCDGKPGESRTVVVSR---------- 273 (803)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Di---------- 273 (803)
.|.+++.++..+.+..............+-..+.+ ...+..+|..+....+.+.||+...+..+..|.
T Consensus 40 ~w~ei~~~es~~k~~~~l~~a~~~g~~a~r~~~~~~~~P~~~ElP~~F~~~~L~~sdGk~~~vLa~GrdLr~vA~lqq~l 119 (453)
T TIGR02040 40 RWEEIVTEESKEKVEALLSEAKRTGVGAVRVELNRFVLPSDLELPMEFVLVRLGASDGKDEGVLALGRDLRAVAELQQRL 119 (453)
T ss_pred CHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 44441357789999999971468888577776654117999724403467616787888873588846524789999999
Q ss_pred -HHHHHHH---HHHHHHHHHHHHHHHCCCCEEEEEE-ECEEEEEECCCCCCCCCCCCH--HHHCCCCHHHHCCCCCCCCH
Q ss_conf -7899999---9999999999999834675099985-020699831554444454884--66179866661011112202
Q gi|254780450|r 274 -KNCDSGD---PSGTIANMRFNRFFNNIPMAIASID-KKGRILRTNAHFLKLFPNCTE--GDGTSNDIFSIVHKNEKRKI 346 (803)
Q Consensus 274 -t~~k~~e---~~l~~se~rl~~i~e~~p~~I~~~d-~~g~i~~~N~a~~~l~~g~~~--~~~~g~~~~~~~~~~~~~~~ 346 (803)
..+...| .++|+.|.|||.+++-+.++|.++| .+++|+..|+++..++++... +.++|..+..-+...+++.+
T Consensus 120 v~AQ~AmErDYW~lR~~EtRYR~ll~~s~davllv~~st~rileaN~~A~~lLg~~~~~rd~LvG~~~~~e~~~~~~~~l 199 (453)
T TIGR02040 120 VEAQQAMERDYWKLREMETRYRLLLEVSSDAVLLVDVSTGRILEANSAAAALLGAEGQRRDSLVGREFPQELEEREREEL 199 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHCCCCCCCHHHH
T ss_conf 99987888879998667544433541148867998536534778679999985026775012311134314664543689
Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf 4666655541123345404887388
Q gi|254780450|r 347 IAALYDANDQKSDISPIDSPHPQDE 371 (803)
Q Consensus 347 ~~~~~~~~~~~~~~~~~e~~~~~~~ 371 (803)
...+..... ++...+.++......
T Consensus 200 ~~~l~~~~a-tg~A~~~~i~l~~~~ 223 (453)
T TIGR02040 200 ELLLREVRA-TGKAAEVRILLAESR 223 (453)
T ss_pred HHHHHHHHH-CCCCCCCEEEECCCC
T ss_conf 999986430-157787178745788
No 142
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.96 E-value=1.8e-07 Score=70.59 Aligned_cols=233 Identities=16% Similarity=0.094 Sum_probs=144.1
Q ss_pred HHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 99998524980999959993898106688670999567315611000278761678999999983243232038986010
Q gi|254780450|r 29 ETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSL 108 (803)
Q Consensus 29 ~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~ 108 (803)
++.++++.++++++.|....+.++|..+..+.+.......+..-..+...-.. +.+ ...... ....
T Consensus 3 ~~~~l~~~~~~~~vi~~~~~~~~~~~~a~~~~~~~~~~~i~~~~~~i~~~~~~-~~v----------~~~~~~-~~~~-- 68 (560)
T COG3829 3 SEGILKSILDGPVVIDKNTGIDVANALALAKRQKNAEAVIGRPLREILETLGM-ERV----------EQSRDK-ELTE-- 68 (560)
T ss_pred CHHHHHHCCCCEEEEECCCCEEEECHHHHHHHHCCEEEEECCCHHHHHCCCCC-CEE----------ECCCCC-CEEE--
T ss_conf 04456650464089971775476033777651054478742341111112586-234----------106765-2013--
Q ss_pred EEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHH-HHHHHHHHHHHHHCCCEEEEECCCCCEEEEHH
Q ss_conf 00048986799999999998237880699999997833889999999-99999999998525961999929996897646
Q gi|254780450|r 109 NNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSERKDQEKF-FRELQNAIDYLDHSPVGFMSADHQGKILYINA 187 (803)
Q Consensus 109 ~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l-~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~ 187 (803)
....+ ..+ .+.....+..+.+.....+.++.|+++....-+.. .+..+.+..+++.+..++++.|.+|.++++|+
T Consensus 69 ~~~~~--~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~l~~~~~~l~~il~~~~~~l~vvD~~G~~i~~N~ 144 (560)
T COG3829 69 RLKLK--VKR--IVVVGKTPVDEQGRVVGVLEVFLDISEALELIEENLRQLRQRLEAILDSIDDGLLVVDEDGIIIYYNK 144 (560)
T ss_pred EEECC--CEE--EEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECH
T ss_conf 55406--404--89817852412774445512545149899999999999999999998625674599869996899847
Q ss_pred HHHHHCCCCHHHHCCCCCCHHHHC-CCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEE
Q ss_conf 798642999678045632188808-8204899999986200267148889999804897999999556765388855479
Q gi|254780450|r 188 TLAEWIGIDLTTFTSKSISIGDIT-AGEGLALIQAIRTEPSHQKITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGES 266 (803)
Q Consensus 188 ~~~~llG~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~ 266 (803)
++..++|++.+++++. ...+++ .+.+...+.. ...++.... ..... .+... +...+....+|...+.
T Consensus 145 ~~~~~~gl~~e~~~gk--~~~~v~~~~~~s~~l~v----l~~~kp~~~--~~~~~-~~~~~---i~~~~pv~~~g~l~G~ 212 (560)
T COG3829 145 AYAKLLGLSPEEVLGK--HLLDVVSAGEDSTLLEV----LRTGKPIRD--VVQTY-NGNKI---IVNVAPVYADGQLIGV 212 (560)
T ss_pred HHHHHHCCCHHHHCCC--CHHHHHHCCCCCEEHHH----HHCCCCCEE--EEEEE-CCCCE---EEEECCEECCCCEEEE
T ss_conf 7898839998998197--18988723677410113----415885120--35530-48734---6764447317827889
Q ss_pred EEEEEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999860789999999999999999
Q gi|254780450|r 267 RTVVVSRKNCDSGDPSGTIANMRFN 291 (803)
Q Consensus 267 ~~~~~Dit~~k~~e~~l~~se~rl~ 291 (803)
+++..|++.-+....++.+++...+
T Consensus 213 v~~~~~~~~l~~l~~~~~~~~~~~~ 237 (560)
T COG3829 213 VGISKDVSELERLTRELEESEGLLR 237 (560)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 9752024888999999998753220
No 143
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=98.92 E-value=1.8e-09 Score=84.63 Aligned_cols=64 Identities=27% Similarity=0.323 Sum_probs=56.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4468763034256641589999999999850799847888899999998888764300454212
Q gi|254780450|r 418 NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSR 481 (803)
Q Consensus 418 ~a~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr 481 (803)
+++++|++++||||||||++|.|+++++.......+...+++..|.++++|+..+|+++|+++|
T Consensus 2 ~~~~~~~a~iaHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~lv~~~l~~~~ 65 (65)
T cd00082 2 QAKGEFLANVSHELRTPLTAIRGALELLEEELLDDEEQREYLERIREEAERLLRLINDLLDLSR 65 (65)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3599999987298704888886014898856688699999999999999999999999998609
No 144
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=98.92 E-value=2.5e-09 Score=83.72 Aligned_cols=65 Identities=25% Similarity=0.216 Sum_probs=55.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 687630342566415899999999998507998478888999999988887643004542120058
Q gi|254780450|r 420 VGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM 485 (803)
Q Consensus 420 ~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~ 485 (803)
+++|++++|||+||||++|+++++.+.. ....+++..++..+.++++|+..+|+++|+|||.+.+
T Consensus 2 ~~~~~~~isHelrtPL~~i~~~~~~l~~-~~~~~~~~~~~~~i~~~~~~~~~li~~il~~sr~~~~ 66 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLED-TELSEEQREYLETILRSAERLLRLINDLLDLSRIEAG 66 (66)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8899999769870818889999886530-2799999999998899999999999999999873699
No 145
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=98.90 E-value=8.4e-08 Score=72.91 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=71.1
Q ss_pred HHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCE-EEEEEECC
Q ss_conf 99985249809999599938981066886709995673156110002787616789999999832432320-38986010
Q gi|254780450|r 30 TIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSE-EFRLMQSL 108 (803)
Q Consensus 30 r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-e~~~~~~~ 108 (803)
-.++|++++||+++|.+|+|+|+|+++++++||+.++..|.....+..+..... ..+......+..... +..
T Consensus 10 ~~Il~~~~d~Iiv~D~~g~I~~~N~aa~~l~g~~~~~~~G~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~----- 82 (348)
T PRK11073 10 GQILNSLINSILLLDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLNI--ELMQESLQAGQGFTDNEVT----- 82 (348)
T ss_pred HHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCH--HHHHHHHHCCCCCCCCEEE-----
T ss_conf 999986607964998979701283999999785989985996899846653018--9999999738974132399-----
Q ss_pred EEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHH
Q ss_conf 000489867999999999982378806999999978338899999999999
Q gi|254780450|r 109 NNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFREL 159 (803)
Q Consensus 109 ~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l~~~~ 159 (803)
...++..+|+.+...+. .+. ..+..++|||++|+.++.+.+..
T Consensus 83 --~~~~~~~~~~~~~~~~~--~~~----~~l~~~~di~~~k~l~~e~~~~~ 125 (348)
T PRK11073 83 --LVIDGRSHILSLTAQRL--PEG----MILLEMAPMDNQRRLSQEQLQHA 125 (348)
T ss_pred --EEECCEEEEEEEEEEEC--CCC----EEEEEEEECHHHHHHHHHHHHHH
T ss_conf --99899699999999982--586----89999996279999999999999
No 146
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.87 E-value=1.3e-07 Score=71.50 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=84.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH-CCC-CC
Q ss_conf 8756999769889999999999988989999899899989998659995489985878898889999999986-899-82
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT-YPS-LK 757 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~-~~~-~~ 757 (803)
.+.+||++|+++..+..+..+|+.||+.|..+.+..+. . ...||++++|+.||.++|.+........ .+. -+
T Consensus 535 ~g~~vlvve~~~~~~~~l~~~L~~~g~~v~~~~~~~~l----~--~~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~~ 608 (920)
T PRK11107 535 AGKRLLYVEPNSLAAQATLDLLSETPLEVTYSPTLSQL----P--EAHYDYLLLGCPVTFREPLTMLHERLAKAKSMTDF 608 (920)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHHH----H--CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 58769997697789999999999749645751788775----1--36888799616666654066789998630035784
Q ss_pred EEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 9999067858998767605798075079799999999999
Q gi|254780450|r 758 FIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHE 797 (803)
Q Consensus 758 ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~ 797 (803)
+++++........+.+...+...+|+||++...|..++..
T Consensus 609 ~il~~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~~ 648 (920)
T PRK11107 609 LILALPCHEQVNAEQLKQPGADACLSKPLSETRLLPALLT 648 (920)
T ss_pred EEEEECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHC
T ss_conf 6997156434557887642530211277768899998722
No 147
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.86 E-value=1e-07 Score=72.33 Aligned_cols=228 Identities=13% Similarity=0.136 Sum_probs=142.6
Q ss_pred HHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEC
Q ss_conf 99852596199992999689764679864299967804563218880882048999999862002671488899998048
Q gi|254780450|r 164 DYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDN 243 (803)
Q Consensus 164 ~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 243 (803)
.+++..+.+++..|....+.++|..+..+++-......+. ...++..+-..+... ..+........... .
T Consensus 5 ~~l~~~~~~~~vi~~~~~~~~~~~~a~~~~~~~~~~~i~~--~~~~i~~~~~~~~v~-------~~~~~~~~~~~~~~-~ 74 (560)
T COG3829 5 GILKSILDGPVVIDKNTGIDVANALALAKRQKNAEAVIGR--PLREILETLGMERVE-------QSRDKELTERLKLK-V 74 (560)
T ss_pred HHHHHCCCCEEEEECCCCEEEECHHHHHHHHCCEEEEECC--CHHHHHCCCCCCEEE-------CCCCCCEEEEEECC-C
T ss_conf 4566504640899717754760337776510544787423--411111125862341-------06765201355406-4
Q ss_pred CEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHH-HHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCC
Q ss_conf 979999995567653888554799999860789999999-9999999999983467509998502069983155444445
Q gi|254780450|r 244 GHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPS-GTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFP 322 (803)
Q Consensus 244 g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~-l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~ 322 (803)
....+....+.+..++..++..++.|+++....-.. ++...++|+.+++.+.+++.++|.+|.++++|+++..++
T Consensus 75 ---~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~l~~~~~~l~~il~~~~~~l~vvD~~G~~i~~N~~~~~~~- 150 (560)
T COG3829 75 ---KRIVVVGKTPVDEQGRVVGVLEVFLDISEALELIEENLRQLRQRLEAILDSIDDGLLVVDEDGIIIYYNKAYAKLL- 150 (560)
T ss_pred ---EEEEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECHHHHHHH-
T ss_conf ---0489817852412774445512545149899999999999999999998625674599869996899847789883-
Q ss_pred CCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECC
Q ss_conf 48846617986666101111220246666555411233454048873885068999987304566776138999998502
Q gi|254780450|r 323 NCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEIT 402 (803)
Q Consensus 323 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DIT 402 (803)
+.+.+++.|+++.+++.........+.+ ..+.+.. .........+ . ..+..|.+ .++...+.+.+..|++
T Consensus 151 gl~~e~~~gk~~~~v~~~~~~s~~l~vl---~~~kp~~---~~~~~~~~~~-~--i~~~~pv~-~~g~l~G~v~~~~~~~ 220 (560)
T COG3829 151 GLSPEEVLGKHLLDVVSAGEDSTLLEVL---RTGKPIR---DVVQTYNGNK-I--IVNVAPVY-ADGQLIGVVGISKDVS 220 (560)
T ss_pred CCCHHHHCCCCHHHHHHCCCCCEEHHHH---HCCCCCE---EEEEEECCCC-E--EEEECCEE-CCCCEEEEEEEECCHH
T ss_conf 9998998197189887236774101134---1588512---0355304873-4--67644473-1782788997520248
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 3211221012344
Q gi|254780450|r 403 EQKALEARMAQTQ 415 (803)
Q Consensus 403 erk~~E~~L~qa~ 415 (803)
+.+.+..++.+++
T Consensus 221 ~l~~l~~~~~~~~ 233 (560)
T COG3829 221 ELERLTRELEESE 233 (560)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8899999999875
No 148
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=98.85 E-value=1.7e-08 Score=77.73 Aligned_cols=54 Identities=35% Similarity=0.665 Sum_probs=51.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 69997698899999999999889899998998999899986599954899858788
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMP 738 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp 738 (803)
+||+||||+.++..++.+|+..||+|..+.||.+|++.+..+ .||+|++|+.||
T Consensus 2 kVLivdD~~~~~~~l~~~l~~~g~~v~~~~~g~~~~~~~~~~--~~dlil~D~~mP 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC--CCCEEEEECCCC
T ss_conf 899993799999999999997899999988999999999749--999999967687
No 149
>KOG0787 consensus
Probab=98.74 E-value=2.8e-07 Score=69.27 Aligned_cols=149 Identities=22% Similarity=0.301 Sum_probs=102.0
Q ss_pred EEHHHHHHHHHHHHHHH----HCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCC--CCCE----EEEE
Q ss_conf 53467899999999875----035681699981489722699871699999999874227652067--8857----9999
Q gi|254780450|r 490 LNLTEVIGNLRMMIQKL----ISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLK--ESGS----LTVR 559 (803)
Q Consensus 490 ~~l~~~i~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~--~~G~----v~i~ 559 (803)
+++.+++.+..+..+.+ ......+++..+...... | .=|.-|.-++..|+.||..|--.- +.+. |.|.
T Consensus 216 c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a~~~~-v-yvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~ 293 (414)
T KOG0787 216 CSVKKVIKDASENARFLCDQYYLNSPELIIEGHNALSFT-V-YVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVT 293 (414)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 999999999999999999986337970675376667676-0-45618999999999999999999744488889985999
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCC--------C--CCCCCHHHHHHHHHHCC
Q ss_conf 9850421012245566788978999999788668844542023222210135--------7--76530388999998516
Q gi|254780450|r 560 TRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKKV--------G--EGTGLGLSVVYGIIRQS 629 (803)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~--------g--~GtGLGL~i~~~iv~~~ 629 (803)
+.. +.+.+.|.++|.|-||+.+..+++|.--|||... + .|-|-||.|++-..+..
T Consensus 294 V~~---------------gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~GLPisrlYa~yf 358 (414)
T KOG0787 294 VAK---------------GDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGFGLPISRLYARYF 358 (414)
T ss_pred EEC---------------CCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 863---------------88635899713789968057899986612568898778877676665556873799999994
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 75499996188942999994375766
Q gi|254780450|r 630 GGYILPESEVGKGTIFRIFLPRYVQE 655 (803)
Q Consensus 630 gG~i~v~S~~g~Gt~F~i~lP~~~~~ 655 (803)
||.+.+.|-.|-||-..|+|-+...+
T Consensus 359 ~Gdl~L~SleG~GTD~yI~Lk~ls~~ 384 (414)
T KOG0787 359 GGDLKLQSLEGIGTDVYIYLKALSME 384 (414)
T ss_pred CCCEEEEEEECCCCCEEEEECCCCCC
T ss_conf 88705785203544268995268864
No 150
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310 Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded. The phoR gene usually is adjacent to the response regulator phoB gene (IPR011879 from INTERPRO)..
Probab=98.69 E-value=3.9e-07 Score=68.21 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEE--
Q ss_conf 118999999852498099995999389810668867099956731561100027876167899999998324323203--
Q gi|254780450|r 24 PKIPLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEE-- 101 (803)
Q Consensus 24 ~~~~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e-- 101 (803)
+.-.+++...+++||||+++|.++.|.|||+++++++|.......|+...-+...|+..+.. ..+....+.
T Consensus 3 ~~~~rf~~a~~AlPDavv~ld~~~~I~W~N~~A~~~LGl~~p~D~Gq~i~~l~R~P~F~~yl-------~~~~~t~~p~~ 75 (339)
T TIGR02966 3 ALLSRFRAAAQALPDAVVVLDEEGQIEWCNKAAERLLGLRWPDDLGQRITNLIRHPEFVEYL-------AAGRFTSEPEQ 75 (339)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCCCHHHCCCHHHHCCCHHHHHHH-------HCCCCCCCCCC
T ss_conf 68899999997589829997289837862148898627427345077021210576799997-------33555578853
Q ss_pred EEEEECCEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHH
Q ss_conf 8986010000489867999999999982378806999999978338899999
Q gi|254780450|r 102 FRLMQSLNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSERKDQE 153 (803)
Q Consensus 102 ~~~~~~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee 153 (803)
..+.. ...... ..+.++.+|..++. .+..++|||+-++.|.
T Consensus 76 L~~~~-----~p~~~~--~~l~~r~~PY~~~~----~Ll~~RDvT~l~rLe~ 116 (339)
T TIGR02966 76 LELPD-----SPINEE--RVLEIRIMPYGEEQ----KLLVARDVTRLRRLEQ 116 (339)
T ss_pred EEECC-----CCCCCC--CEEEEEEEEECCCC----EEEEEECHHHHHHHHH
T ss_conf 11046-----888866--47999999756983----7999876368999986
No 151
>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.65 E-value=3.5e-07 Score=68.57 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=71.8
Q ss_pred EEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHH--CCCCEEEEEEEEEEEECCEEEEEEEEEEEEECC
Q ss_conf 897646798642999678045632188808820489999998620--026714888999980489799999955676538
Q gi|254780450|r 182 ILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEP--SHQKITTLDLDLRRIDNGHGIPVKIVHHILASC 259 (803)
Q Consensus 182 i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~ 259 (803)
++|+|+++++++||+++++.+....|.+++||+|.+.+....... ........++++.++ +|...|+.....++.+.
T Consensus 1 v~y~s~~~~~i~G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~-dG~~~wi~~~~~~~~d~ 79 (90)
T pfam08447 1 IIYWSPRFEEILGYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKKGEPYSGEYRIRRK-DGEYRWVEARGRPIRDE 79 (90)
T ss_pred CEEECHHHHHHHCCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECC-CCCEEEEEEEEEEEECC
T ss_conf 99999899998499901107998899987190568899988788886058740468999815-99399999999999999
Q ss_pred CCCEEEEEEEE
Q ss_conf 88554799999
Q gi|254780450|r 260 DGKPGESRTVV 270 (803)
Q Consensus 260 ~G~~~~~~~~~ 270 (803)
+|++..++++.
T Consensus 80 ~G~~~~~~Gi~ 90 (90)
T pfam08447 80 NGKPVRVIGVA 90 (90)
T ss_pred CCCEEEEEEEC
T ss_conf 99999999689
No 152
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=98.59 E-value=2.1e-05 Score=56.02 Aligned_cols=228 Identities=20% Similarity=0.158 Sum_probs=114.2
Q ss_pred EEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCEEECCCCCEEE
Q ss_conf 99995999389810668867099956731561100027876167899999998324323203898601000048986799
Q gi|254780450|r 40 ILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHW 119 (803)
Q Consensus 40 i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~g~~~w 119 (803)
++..+..+.+.+.|......++.......+ .... ....................... ..........+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 73 (232)
T COG2202 2 ILVLDRDGRIIYANEAAEELLGYSAEELLG-LLLA-LHPEDRDRLRELLRRLLAGEELL------SEELRLVRKDGEERW 73 (232)
T ss_pred CEEECCCCCEEEECHHHHHHHCCCHHHHHC-CHHC-CCHHHHHHHHHHHHHHHHCCCCH------HHEEEEEECCCCEEE
T ss_conf 147716664244415568875334465531-0210-10456778889999976300000------010235413674478
Q ss_pred EEEEEEEEEECCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHH
Q ss_conf 99999999823788069999999783388999999999999999998525961999929996897646798642999678
Q gi|254780450|r 120 YRLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTT 199 (803)
Q Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~i~DIT~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e 199 (803)
........ ............. .+++..+..++.+.....++..+++..+.+++.+|.+|.+.++|+.+++++|++..+
T Consensus 74 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~g~~~~~ 151 (232)
T COG2202 74 VELSAAPL-RDGEGRVLGLLGL-RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELLGYSPEE 151 (232)
T ss_pred EEEEEEEE-ECCCCHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHHCCCHHH
T ss_conf 87410011-1233035555301-115778889999875799999999568967999909998999758999986979899
Q ss_pred HCCCCCCHHHHCCCHHHH-HHHHHHHHHCCCCEEEEEEEEEEEECCEE-EEEEEEEEEEECCCCCEEEEEEEEEEHHHHH
Q ss_conf 045632188808820489-99999862002671488899998048979-9999955676538885547999998607899
Q gi|254780450|r 200 FTSKSISIGDITAGEGLA-LIQAIRTEPSHQKITTLDLDLRRIDNGHG-IPVKIVHHILASCDGKPGESRTVVVSRKNCD 277 (803)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~g~~-~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k 277 (803)
.................. .................+......+ |.. .+.......... +|..........|+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~ 229 (232)
T COG2202 152 ELGRGLSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKD-GERVRWILSRISPVRD-DGEIVGVVGIARDITERK 229 (232)
T ss_pred HHCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECC-CCEEEEEEEEECCCCC-CCCEEEEEEEEECHHHHH
T ss_conf 82776065403463046678999997524576405899999438-9799999987313246-885778999987346899
Q ss_pred HH
Q ss_conf 99
Q gi|254780450|r 278 SG 279 (803)
Q Consensus 278 ~~ 279 (803)
+.
T Consensus 230 ~~ 231 (232)
T COG2202 230 QA 231 (232)
T ss_pred HH
T ss_conf 74
No 153
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=98.58 E-value=4e-06 Score=61.06 Aligned_cols=43 Identities=23% Similarity=0.374 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCC
Q ss_conf 8621189999998524980999959993898106688670999
Q gi|254780450|r 21 TIKPKIPLETIFMDSEPEGILITNERGHIIYANNAYNALTNAV 63 (803)
Q Consensus 21 ~lr~~~~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~ 63 (803)
.++.+..+.++++|++|.++++.|.+|+++.||.+|+..++.+
T Consensus 570 ~L~~ql~f~~~L~d~iP~pi~v~d~~g~~i~~N~a~~~~~~~d 612 (1197)
T PRK09959 570 DLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTAD 612 (1197)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9998899999998369987699825561224118889875231
No 154
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.58 E-value=2.4e-06 Score=62.63 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=82.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997698899999999999889899998998999899986599954899858788988899999999868998299990
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
+|||||||+.-|.-++.+|+..|.++...+++.-..... +. ...-+++++..|+ +..++++.+.+..|++|++.+.
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~~~~-~~-~~~a~~v~~~~~~--~~~~~l~~l~~~~p~~Pvlllg 76 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSAALL-SS-RWEALAVILGSVS--GLADLLKALAKWDPHLPVLLLG 76 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH-HC-CCCEEEEEECCCC--CHHHHHHHHHHHCCCCCEEEEC
T ss_conf 989986888999979999986499649954889889886-37-8852999967852--0999999999648899999987
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 678589987676057980750797999999999998
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHEL 798 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~ 798 (803)
.+.... .. ....+.|.+|++-.+|.+++++.
T Consensus 77 ~~~~~~---~~--~nvvg~Le~Pl~Y~qL~daLh~c 107 (109)
T pfam06490 77 EHDSAA---EL--ANVIGELEEPLNYPQLTDLLHRC 107 (109)
T ss_pred CCCCHH---HC--CCEEEEECCCCCHHHHHHHHHHH
T ss_conf 887521---20--55258707889879999999875
No 155
>KOG3558 consensus
Probab=98.50 E-value=1.8e-06 Score=63.53 Aligned_cols=213 Identities=15% Similarity=0.180 Sum_probs=116.5
Q ss_pred HCCCE-EEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCC------CC---E-EEEEE
Q ss_conf 25961-99992999689764679864299967804563218880882048999999862002------67---1-48889
Q gi|254780450|r 168 HSPVG-FMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSH------QK---I-TTLDL 236 (803)
Q Consensus 168 ~a~~g-i~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~-~~~e~ 236 (803)
.+-+| +++++.||+++|+.+.....+|.+.-|+.+ .+..|++||-|...+.....-... .. + ..|-+
T Consensus 126 qsLDGFVm~l~~dG~~lYiSEtVS~yLGLSQvELTG--~SvFDfiHP~DheE~~eqL~l~~~~p~~~es~~~~teRsFfl 203 (768)
T KOG3558 126 QSLDGFVMALTQDGDFLYISETVSIYLGLSQVELTG--SSVFDFIHPCDHEEIAEQLGLRLTTPEVKESTDTSTERSFFL 203 (768)
T ss_pred HHCCCEEEEECCCCCEEEEECHHHHHHCCCCEEEEC--CHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 632443899816787799820357661711024305--413212576678999987433568876232456754325799
Q ss_pred EEE--EEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC--------CC----EEE
Q ss_conf 999--8048979999995567653888554799999860789999999999999999998346--------75----099
Q gi|254780450|r 237 DLR--RIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNI--------PM----AIA 302 (803)
Q Consensus 237 ~~~--~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~--------p~----~I~ 302 (803)
+.. ..+.|+...+.-....+....|.............-....+- ..-+-.+.+.+ |. .+.
T Consensus 204 RMKsTLT~RGRtlnlKSa~yKvlh~tgh~rv~~~~sh~s~~~g~~~P-----l~~lV~~a~alp~ps~~EipL~~~~Fvt 278 (768)
T KOG3558 204 RMKSTLTKRGRTLNLKSAGYKVLHCTGHLRVYNNPSHNSPLCGYKEP-----LLGLVALAEALPPPSYTEIPLDCHMFVT 278 (768)
T ss_pred EEEEEECCCCCEEEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCC-----CHHEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 85315516773566501422689886345404677777755576655-----2100454113799865666657751677
Q ss_pred EEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEE
Q ss_conf 98502069983155444445488466179866661011112202466665554112334540488738850689999873
Q gi|254780450|r 303 SIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISAT 382 (803)
Q Consensus 303 ~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~ 382 (803)
.+.-|-+|+||...+.+++ ++.+.+++|+++++++|+.|...+.+.....+. +|......+++..+.|.++|+...+.
T Consensus 279 Rhs~DmkityCedRisdlm-~y~PeeLvGrS~Ye~~Ha~Ds~~v~KSh~dL~~-KGQv~TgyYR~lak~GGyvWlQTqAT 356 (768)
T KOG3558 279 RHSLDMKITYCEDRISDLM-DYEPEELVGRSCYEFVHALDSDRVRKSHHDLLT-KGQVVTGYYRLLAKNGGYVWLQTQAT 356 (768)
T ss_pred EEECCEEEEEECHHHHHHH-CCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHCCCEEEEEEEEE
T ss_conf 6414516888735678876-479788626048876337656677888999975-47451067788774497699986547
Q ss_pred ECCCCCC
Q ss_conf 0456677
Q gi|254780450|r 383 LDRSTEA 389 (803)
Q Consensus 383 ~~~~~~~ 389 (803)
...+...
T Consensus 357 Vi~~tkn 363 (768)
T KOG3558 357 VIYNTKN 363 (768)
T ss_pred EEECCCC
T ss_conf 9855888
No 156
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=98.50 E-value=0.00015 Score=49.98 Aligned_cols=227 Identities=12% Similarity=0.118 Sum_probs=122.9
Q ss_pred EEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEEEEEEE
Q ss_conf 99929996897646798642999678045632188808820489999998620026714888999980489799999955
Q gi|254780450|r 174 MSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDNGHGIPVKIVH 253 (803)
Q Consensus 174 ~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~v~~~~ 253 (803)
+..+..+.+.+.|......+++....... .....................................+...+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (232)
T COG2202 3 LVLDRDGRIIYANEAAEELLGYSAEELLG----LLLALHPEDRDRLRELLRRLLAGEELLSEELRLVRKDGEERWVELSA 78 (232)
T ss_pred EEECCCCCEEEECHHHHHHHCCCHHHHHC----CHHCCCHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCEEEEEEEE
T ss_conf 47716664244415568875334465531----02101045677888999997630000001023541367447887410
Q ss_pred EEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCC
Q ss_conf 67653888554799999860789999999999999999998346750999850206998315544444548846617986
Q gi|254780450|r 254 HILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSND 333 (803)
Q Consensus 254 ~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~ 333 (803)
.......+........ .+++..+..+..++..+.+++.++++.+++++.+|.+|.+.++|+++.+++ |+...+..+..
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~n~~~~~~~-g~~~~~~~~~~ 156 (232)
T COG2202 79 APLRDGEGRVLGLLGL-RDITERKRAEEALRESEERLRALLEASPDGIWVLDEDGRILYANPAAEELL-GYSPEEELGRG 156 (232)
T ss_pred EEEECCCCHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECHHHHHHH-CCCHHHHHCCC
T ss_conf 0111233035555301-115778889999875799999999568967999909998999758999986-97989982776
Q ss_pred HHHHCCCCCCCC-HHHHHHHHHHHCCCCCCCCEEEECCCCEE-EEEEEEEEECCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 666101111220-24666655541123345404887388506-899998730456677613899999850232112
Q gi|254780450|r 334 IFSIVHKNEKRK-IIAALYDANDQKSDISPIDSPHPQDENRY-FRFYISATLDRSTEAPEEQAILYTVEITEQKAL 407 (803)
Q Consensus 334 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~ 407 (803)
............ ..................+......++.. .+....... ....+..........|++++++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~ 231 (232)
T COG2202 157 LSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKDGERVRWILSRISP-VRDDGEIVGVVGIARDITERKQA 231 (232)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEEEEECC-CCCCCCEEEEEEEEECHHHHHHH
T ss_conf 0654034630466789999975245764058999994389799999987313-24688577899998734689974
No 157
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.48 E-value=1.4e-05 Score=57.26 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=99.9
Q ss_pred EEECHHHH-HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHH
Q ss_conf 97833889-99999999999999998525961999929996897646798642999678045632188808820489999
Q gi|254780450|r 142 ITDITSER-KDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQ 220 (803)
Q Consensus 142 i~DIT~~k-~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~ 220 (803)
+.|.|++- .+++-+.++..++.+++.++.+|+...|..|+++.+|..+.+++|.+.++..+.. ..+++.-++.-.+.
T Consensus 92 fn~Lt~~~~~aq~n~e~Er~kL~SvlayMtDGViATdRrG~iI~iN~~A~k~L~~~~E~~~~~~--i~elL~i~d~y~~~ 169 (459)
T COG5002 92 FNDLTKRVQEAQANTEQERRKLDSVLAYMTDGVIATDRRGKIILINKPALKMLGVSKEDALGRS--ILELLKIEDTYTFE 169 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCHHHHHHCCCHHHHHCCC--HHHHHCCCCCEEHH
T ss_conf 9789999999987678888889989998707657645778689935079998486778771653--78885775430288
Q ss_pred HHHHHHCCCCEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHH
Q ss_conf 99862002671488899998048979999995567653888554799999860789999999999
Q gi|254780450|r 221 AIRTEPSHQKITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTI 285 (803)
Q Consensus 221 ~~~~~~~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~ 285 (803)
..... ... +.+-..+.++.+..++..+++....|...+.+++..|+|++++.|++.|+
T Consensus 170 dL~e~-----~~s--~lld~~~~~E~~~lrv~Fs~i~rEsGfisGlIaVlhDvTEqek~e~ErRe 227 (459)
T COG5002 170 DLVEK-----NDS--LLLDSSDEEEGYVLRVNFSVIQRESGFISGLIAVLHDVTEQEKVERERRE 227 (459)
T ss_pred HHHHC-----CCC--EEEEECCCCCCEEEEEEEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 88725-----982--89860478863799998888851146644069987314387888999999
No 158
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=98.48 E-value=6.1e-06 Score=59.81 Aligned_cols=101 Identities=26% Similarity=0.271 Sum_probs=57.5
Q ss_pred CCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHH-CCCCEEEEEEEEEEEECCEEEE
Q ss_conf 961999929996897646798642999678045632188808820489999998620-0267148889999804897999
Q gi|254780450|r 170 PVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEP-SHQKITTLDLDLRRIDNGHGIP 248 (803)
Q Consensus 170 ~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~g~~~~ 248 (803)
+.+++.+|.+|+++++|+++++++||+.+++.++. +.+++++++...+....... ..+.....++++.... |...|
T Consensus 2 ~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~ 78 (103)
T cd00130 2 PDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKS--LLDLIHPEDREELRERLENLLSGGEPVTLEVRLRRKD-GSVIW 78 (103)
T ss_pred CEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCC--HHHEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-CCEEE
T ss_conf 62899997989899998899998798878916996--5424552116999999999997499852489999999-99999
Q ss_pred EEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf 9995567653888554799999860
Q gi|254780450|r 249 VKIVHHILASCDGKPGESRTVVVSR 273 (803)
Q Consensus 249 v~~~~~~~~~~~G~~~~~~~~~~Di 273 (803)
+.....+..+.++....++....|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~di 103 (103)
T cd00130 79 VLVSLTPIRDEGGEVIGLLGVVRDI 103 (103)
T ss_pred EEEEEEEEECCCCCEEEEEEEEECC
T ss_conf 9999999999998999999999829
No 159
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.48 E-value=2e-07 Score=70.22 Aligned_cols=13 Identities=0% Similarity=-0.207 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 0789999999999
Q gi|254780450|r 273 RKNCDSGDPSGTI 285 (803)
Q Consensus 273 it~~k~~e~~l~~ 285 (803)
.+.++.....|..
T Consensus 142 ~~~~~~l~~~L~~ 154 (435)
T COG3706 142 ATQRERLRRILQV 154 (435)
T ss_pred HHHHHHHHHHHHH
T ss_conf 7799999999875
No 160
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=98.43 E-value=5.9e-06 Score=59.93 Aligned_cols=97 Identities=19% Similarity=0.327 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHH-HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC
Q ss_conf 699999999874227-6520678857999998504210122455667889789999997886688445420232222101
Q gi|254780450|r 531 SQFEQVLVNLCVNAH-HAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK 609 (803)
Q Consensus 531 ~~l~qvl~NLl~NA~-~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk 609 (803)
..++-++.--++||. +|......|.|.|.+.. .++.+.|.|+|+|.|++++....-..|+..++
T Consensus 41 ~di~LAV~EA~tNaI~Hay~~~~~~~i~i~~~~---------------~~~~l~i~V~D~G~gfD~~~~~~~~~P~~~~~ 105 (158)
T PRK04069 41 EDLKIAVSEACTNAVQHAYKEEEVGEINIRFEI---------------YEDRLEIVVADNGDSFDYETTKSKIGPYDPSE 105 (158)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE---------------ECCEEEEEEEECCCCCCHHHCCCCCCCCCCCC
T ss_conf 889999999999999975156999479999999---------------59999999999174879567432458888888
Q ss_pred CCC--CCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf 357--765303889999985167549999618894299999
Q gi|254780450|r 610 KVG--EGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF 648 (803)
Q Consensus 610 ~~g--~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~ 648 (803)
... +..||||++.++++.. +.++| +.|++.++.
T Consensus 106 ~l~~~~~gGlGl~lI~~lmDe----V~~~~--~~Gt~v~m~ 140 (158)
T PRK04069 106 PIDDLREGGLGLFLIETLMDD----VTVYK--DSGVTVSMT 140 (158)
T ss_pred CHHHCCCCCCHHHHHHHHCCE----EEEEE--CCCEEEEEE
T ss_conf 611136787409999975255----89990--898299999
No 161
>TIGR01052 top6b DNA topoisomerase VI, B subunit; InterPro: IPR005734 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B of topoisomerase VI, a type IIB topoisomerase found predominantly in archaea, but also in a few eukayotes, such as the plant Arabidopsis thaliana . This enzyme assembles as a heterotetramer, consisting of two A subunits required for DNA cleavage and two B subunits required for ATP hydrolysis. The B subunit is structurally similar to the ATPase domain of type IIA topoisomerases, but the A subunit is distinct, and instead shares homology with the Spo11 protein that mediates double-strand DNA breaks during meiotic recombination in eukaryotes . Therefore, though related to type IIA topoisomerases, topoisomerase VI may have a distinctive mechanism of action. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=98.42 E-value=1.1e-06 Score=64.95 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=28.5
Q ss_pred HHHHHHHCCCCE-EEEEEECEEEEEECCCCCCCCCCCCHHHHCCC
Q ss_conf 999998346750-99985020699831554444454884661798
Q gi|254780450|r 289 RFNRFFNNIPMA-IASIDKKGRILRTNAHFLKLFPNCTEGDGTSN 332 (803)
Q Consensus 289 rl~~i~e~~p~~-I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~ 332 (803)
-++++.=..|.+ |...||+|.+.++|++..++ +- .|.++..+
T Consensus 198 Ylrrt~~anPHA~I~l~~PdG~~~~F~R~~~~i-Pk-~P~E~KPH 240 (662)
T TIGR01052 198 YLRRTAVANPHAKIVLVEPDGEIYVFPRSTDEI-PK-PPKEMKPH 240 (662)
T ss_pred HHHHHHHHCCCCEEEEECCCCCEEECCCCCCCC-CC-CCCCCCCC
T ss_conf 989987518640899886986377536631237-63-09767888
No 162
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=98.41 E-value=3.8e-06 Score=61.23 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCC
Q ss_conf 5961999929996897646798642999678045
Q gi|254780450|r 169 SPVGFMSADHQGKILYINATLAEWIGIDLTTFTS 202 (803)
Q Consensus 169 a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~ 202 (803)
-.+-|...|++|.+.++++.-..+- -++.|+.+
T Consensus 204 PhA~I~l~dPdG~~~vf~r~t~~lP-~pP~E~kP 236 (538)
T COG1389 204 PHARIVLKDPDGNLVVFPRSTDKLP-KPPKEIKP 236 (538)
T ss_pred CCEEEEEECCCCCEEEECCCHHHCC-CCCCCCCC
T ss_conf 7417999889986787133141179-99300489
No 163
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=98.40 E-value=2.2e-06 Score=62.91 Aligned_cols=103 Identities=21% Similarity=0.175 Sum_probs=57.9
Q ss_pred CCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCEEECCCC
Q ss_conf 49809999599938981066886709995673156110002787616789999999832432320389860100004898
Q gi|254780450|r 36 EPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNS 115 (803)
Q Consensus 36 ~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~g 115 (803)
++++++++|.+|+++|+|+++++++|++..+..+.....+.+..+.......+......+.....++++ ...+|
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g 74 (103)
T cd00130 1 LPDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTLEVRL------RRKDG 74 (103)
T ss_pred CCEEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHEECCHHHHHHHHHHHHHHHCCCCCEEEEEE------ECCCC
T ss_conf 962899997989899998899998798878916996542455211699999999999749985248999------99999
Q ss_pred CEEEEEEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 679999999999823788069999999783
Q gi|254780450|r 116 EPHWYRLKARVLPISLHKEKLLYAWRITDI 145 (803)
Q Consensus 116 ~~~w~~i~~~~~~~~~~~~~~~~~~~i~DI 145 (803)
...|..+...+..... +....++..++||
T Consensus 75 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~di 103 (103)
T cd00130 75 SVIWVLVSLTPIRDEG-GEVIGLLGVVRDI 103 (103)
T ss_pred CEEEEEEEEEEEECCC-CCEEEEEEEEECC
T ss_conf 9999999999999999-8999999999829
No 164
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=98.35 E-value=7.6e-06 Score=59.12 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=10.1
Q ss_pred EEEECCCCCEEEEHHHHHH
Q ss_conf 9999299968976467986
Q gi|254780450|r 173 FMSADHQGKILYINATLAE 191 (803)
Q Consensus 173 i~~~D~~g~i~~~N~~~~~ 191 (803)
|...|++|....+.++...
T Consensus 206 I~f~~Pdg~~~~f~R~t~~ 224 (533)
T PRK04184 206 ITLKDPDGEELVFERATDE 224 (533)
T ss_pred EEEECCCCCEEEEEECCCC
T ss_conf 9998899987998404566
No 165
>TIGR01925 spIIAB anti-sigma F factor; InterPro: IPR010194 This entry describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter . SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex . The SpoIIE phosphatase dephosphorylates SpoIIAA.; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0030435 sporulation, 0045892 negative regulation of transcription DNA-dependent.
Probab=98.33 E-value=1.2e-06 Score=64.91 Aligned_cols=97 Identities=26% Similarity=0.361 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHH-HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC
Q ss_conf 699999999874227-6520678857999998504210122455667889789999997886688445420232222101
Q gi|254780450|r 531 SQFEQVLVNLCVNAH-HAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK 609 (803)
Q Consensus 531 ~~l~qvl~NLl~NA~-~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk 609 (803)
.-++-++..=++||. |-.....+|.|.|...-. .+.+.++|.|+|+|| +.+++.-+|.||+|
T Consensus 38 ~diK~~VSEAVTNAIIHGYE~~~~~~V~I~~~~~---------------d~~~~~~v~D~G~GI--~~lE~A~~PLyTsk 100 (137)
T TIGR01925 38 TDIKTAVSEAVTNAIIHGYEENKEGVVIISATIE---------------DDEVSITVRDEGIGI--ENLEEAREPLYTSK 100 (137)
T ss_pred HHHHHHHHHHHHCCEEECEEECCCCEEEEEEEEE---------------CCEEEEEEEECCCCH--HHHHHHCCCCCCCC
T ss_conf 5554333223212053145637997789999960---------------548999986467572--33785326645799
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf 357765303889999985167549999618894299999
Q gi|254780450|r 610 KVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF 648 (803)
Q Consensus 610 ~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~ 648 (803)
..=+-+|+|..|.-. .=-.|.|+|++++||+..+.
T Consensus 101 PeLERSGMGFTvME~----FMD~~~v~S~~~~GT~I~~~ 135 (137)
T TIGR01925 101 PELERSGMGFTVMES----FMDDVEVDSEKEKGTKIILK 135 (137)
T ss_pred CCCCCCCCCEEEECC----CCCCEEEEECCCCCCEEEEE
T ss_conf 872206786012111----24512686238998468875
No 166
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=98.32 E-value=1.5e-06 Score=64.06 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=5.6
Q ss_pred CCEEEEECCCCCEE
Q ss_conf 96199992999689
Q gi|254780450|r 170 PVGFMSADHQGKIL 183 (803)
Q Consensus 170 ~~gi~~~D~~g~i~ 183 (803)
|.--|.+..+|+.+
T Consensus 182 P~I~f~l~~~~k~~ 195 (612)
T PRK00095 182 PDVAFTLTHNGKLV 195 (612)
T ss_pred CCEEEEEEECCEEE
T ss_conf 97589999899997
No 167
>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=98.25 E-value=1.8e-06 Score=63.56 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=45.7
Q ss_pred EEEECCCCCCCCCCCCHHHHCCC--CHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCC
Q ss_conf 99831554444454884661798--6666101111220246666555411233454048873885068999987304566
Q gi|254780450|r 310 ILRTNAHFLKLFPNCTEGDGTSN--DIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRST 387 (803)
Q Consensus 310 i~~~N~a~~~l~~g~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~ 387 (803)
++|||+++++++ |+++++..+. .+.+++||+|++.+.+.+.....+.......+++..+++|.+.|+.....+.++.
T Consensus 1 v~y~s~~~~~i~-G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~dG~~~wi~~~~~~~~d~ 79 (90)
T pfam08447 1 IIYWSPRFEEIL-GYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKKGEPYSGEYRIRRKDGEYRWVEARGRPIRDE 79 (90)
T ss_pred CEEECHHHHHHH-CCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEEECC
T ss_conf 999998999984-9990110799889998719056889998878888605874046899981599399999999999999
Q ss_pred CCCCEEEEEE
Q ss_conf 7761389999
Q gi|254780450|r 388 EAPEEQAILY 397 (803)
Q Consensus 388 ~~~~~~~i~~ 397 (803)
+|.+...+++
T Consensus 80 ~G~~~~~~Gi 89 (90)
T pfam08447 80 NGKPVRVIGV 89 (90)
T ss_pred CCCEEEEEEE
T ss_conf 9999999968
No 168
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=98.24 E-value=0.00056 Score=45.99 Aligned_cols=115 Identities=10% Similarity=0.043 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCH--HHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999999985259619999299968976467986429996--78045632188808820489999998620026714888
Q gi|254780450|r 158 ELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDL--TTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLD 235 (803)
Q Consensus 158 ~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 235 (803)
..+.+..++++...|+..+|.+|+++.+|+++.++++... ++..+ ....++.+... +...... + ....+
T Consensus 219 l~~er~aiL~s~~eGVIavD~~g~I~l~N~~A~~ll~~~~~~~~~~g--~~~~~~~~~~~---l~~vl~~---~-~~~~d 289 (541)
T PRK11086 219 LFEQRQAMLQSIKEGVIAVDDRGEVTLINDEAQRLFYKKGQEDDPLS--TDVHSWSPVSR---LKEVLRT---G-TPRRD 289 (541)
T ss_pred HHHHHHHHHHHHHCEEEEECCCCEEEEECHHHHHHHCCCCCCCCCCC--CCHHHHCCCHH---HHHHHHC---C-CCCCE
T ss_conf 99999999853001699975898799984999987433588743125--51777275455---9999844---8-85310
Q ss_pred EEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 999980489799999955676538885547999998607899999999999
Q gi|254780450|r 236 LDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIA 286 (803)
Q Consensus 236 ~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~s 286 (803)
... ..++..+.+. ..++. .+|...+.+.++.|+|+.++.+++|...
T Consensus 290 ~e~--~~~~~~l~~~--~~pi~-~~g~~~G~V~~~rD~TE~~~L~~~L~~v 335 (541)
T PRK11086 290 EEI--NINGRLLLTN--TVPVR-VNGEIIGAISTFRDKTEVRQLAQRLDGV 335 (541)
T ss_pred EEE--EECCEEEEEE--EEEEE-ECCEEEEEEEEEECHHHHHHHHHHHHHH
T ss_conf 799--9899899999--77765-4890689999984427899999999999
No 169
>TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex ..
Probab=98.17 E-value=5.4e-06 Score=60.15 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCC
Q ss_conf 99999998742276520678857999998504210122455667889789999997886688445420232222101
Q gi|254780450|r 533 FEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTK 609 (803)
Q Consensus 533 l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk 609 (803)
.-.|+--|+-||.|| +.-.|.|.+.+ |..=.|.|+|||.||+++.++.+.+||+|+|
T Consensus 23 p~~vVKELvENSLDA----GAt~I~v~~~~----------------gG~~~I~V~DNG~Gi~~~d~~~~~~~haTSK 79 (367)
T TIGR00585 23 PASVVKELVENSLDA----GATKIEVEIEE----------------GGLKLIEVSDNGSGIDKEDLELACERHATSK 79 (367)
T ss_pred HHHHHHHHHHHHHCC----CCCEEEEEEEE----------------CCEEEEEEEECCCCCCHHHHHHHHCCCCCCC
T ss_conf 799999988731214----88589999962----------------6535899997785677777998612357763
No 170
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.15 E-value=2.7e-05 Score=55.29 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 99999999852596199992999689764679864299967804563218880882048999999862002671488899
Q gi|254780450|r 158 ELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLD 237 (803)
Q Consensus 158 ~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 237 (803)
+.+++..++++.|+||+.+|.+|+++.+|+++++++|.+.+++.++. ..+++++.....+.. .. .......
T Consensus 78 ~~~~L~alLdsl~dgV~svD~~G~I~~~N~aa~~i~~~~~~~~~G~~--i~~~~~~~~~~~~l~--~~--~~~~~~~--- 148 (513)
T PRK10820 78 EHLALSALLEALPEPVLSIDMKSKVELANPASCQLFGQSEERLRNHT--AAQLINGFNFLRWLE--SE--PQDSHNE--- 148 (513)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCC--HHHHCCCCCHHHHHH--CC--CCCCCCE---
T ss_conf 88899999973899789985998199763999998498968877979--999718756999986--28--9876635---
Q ss_pred EEEEECCEEEEEEEEEEEEECCCCC--EEEEEEEEEEHHHH
Q ss_conf 9980489799999955676538885--54799999860789
Q gi|254780450|r 238 LRRIDNGHGIPVKIVHHILASCDGK--PGESRTVVVSRKNC 276 (803)
Q Consensus 238 ~~~~~~g~~~~v~~~~~~~~~~~G~--~~~~~~~~~Dit~~ 276 (803)
....+|..+.+.+....+.+.+|. ..+.+.++.+.++.
T Consensus 149 -~~~~~~~~~~~~~~pi~~~~~~~~~~~~GaV~~lk~~~~~ 188 (513)
T PRK10820 149 -HVVINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 (513)
T ss_pred -EEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEECCHHHH
T ss_conf -9987696789997678752778860366689882468999
No 171
>KOG3558 consensus
Probab=98.15 E-value=0.00023 Score=48.70 Aligned_cols=229 Identities=12% Similarity=0.117 Sum_probs=127.3
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 99999852498099995999389810668867099956731561100027876167899999998324323203898601
Q gi|254780450|r 28 LETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQS 107 (803)
Q Consensus 28 ~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~ 107 (803)
+-..++.+..--|++++.||.++|+.......+|.+.-|+.|+..+.|.++-|..+....+. ++.+.+...+
T Consensus 120 l~~~iLqsLDGFVm~l~~dG~~lYiSEtVS~yLGLSQvELTG~SvFDfiHP~DheE~~eqL~--l~~~~p~~~e------ 191 (768)
T KOG3558 120 LGDHILQSLDGFVMALTQDGDFLYISETVSIYLGLSQVELTGSSVFDFIHPCDHEEIAEQLG--LRLTTPEVKE------ 191 (768)
T ss_pred HHHHHHHHCCCEEEEECCCCCEEEEECHHHHHHCCCCEEEECCHHHHCCCCCCHHHHHHHHC--CCCCCCCCCC------
T ss_conf 20148763244389981678779982035766171102430541321257667899998743--3568876232------
Q ss_pred CEEECCCC-CEEEEEEEEEEEEECCCCCEE-EEEEEEEECHHHHHHHH---------HHHHHHHHHHHHHHH--------
Q ss_conf 00004898-679999999999823788069-99999978338899999---------999999999999852--------
Q gi|254780450|r 108 LNNYSQNS-EPHWYRLKARVLPISLHKEKL-LYAWRITDITSERKDQE---------KFFRELQNAIDYLDH-------- 168 (803)
Q Consensus 108 ~~~~~~~g-~~~w~~i~~~~~~~~~~~~~~-~~~~~i~DIT~~k~~ee---------~l~~~~~~~~~~le~-------- 168 (803)
.....+ .-+.++........... -+. ...|-+.++|-+-+.-. -..+=..-+..+.+.
T Consensus 192 --s~~~~teRsFflRMKsTLT~RGRt-lnlKSa~yKvlh~tgh~rv~~~~sh~s~~~g~~~Pl~~lV~~a~alp~ps~~E 268 (768)
T KOG3558 192 --STDTSTERSFFLRMKSTLTKRGRT-LNLKSAGYKVLHCTGHLRVYNNPSHNSPLCGYKEPLLGLVALAEALPPPSYTE 268 (768)
T ss_pred --CCCCCCCEEEEEEEEEEECCCCCE-EEEECCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCC
T ss_conf --456754325799853155167735-66501422689886345404677777755576655210045411379986566
Q ss_pred CCCE--EEE--ECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCC-CCEEEEEEEEEEEEC
Q ss_conf 5961--999--92999689764679864299967804563218880882048999999862002-671488899998048
Q gi|254780450|r 169 SPVG--FMS--ADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSH-QKITTLDLDLRRIDN 243 (803)
Q Consensus 169 a~~g--i~~--~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~ 243 (803)
.|.+ .|+ ...|-+|+||.+++.+++||++++++++ ++.+++|+.|...+......... |....-.|++. .++
T Consensus 269 ipL~~~~FvtRhs~DmkityCedRisdlm~y~PeeLvGr--S~Ye~~Ha~Ds~~v~KSh~dL~~KGQv~TgyYR~l-ak~ 345 (768)
T KOG3558 269 IPLDCHMFVTRHSLDMKITYCEDRISDLMDYEPEELVGR--SCYEFVHALDSDRVRKSHHDLLTKGQVVTGYYRLL-AKN 345 (768)
T ss_pred CCCCCCEEEEEEECCEEEEEECHHHHHHHCCCHHHHHCH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHC
T ss_conf 665775167764145168887356788764797886260--48876337656677888999975474510677887-744
Q ss_pred CEEEEEEEEEEEEECC-CCCEEEEEEEE
Q ss_conf 9799999955676538-88554799999
Q gi|254780450|r 244 GHGIPVKIVHHILASC-DGKPGESRTVV 270 (803)
Q Consensus 244 g~~~~v~~~~~~~~~~-~G~~~~~~~~~ 270 (803)
|...|+.....++... ++++..++.+-
T Consensus 346 GGyvWlQTqATVi~~tkn~q~q~IicVn 373 (768)
T KOG3558 346 GGYVWLQTQATVIYNTKNPQEQNIICVN 373 (768)
T ss_pred CCEEEEEEEEEEEECCCCCCCCEEEEEE
T ss_conf 9769998654798558889851589998
No 172
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.13 E-value=0.00014 Score=50.14 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCC
Q ss_conf 999999852498099995999389810668867099956731561
Q gi|254780450|r 27 PLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSL 71 (803)
Q Consensus 27 ~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~ 71 (803)
..+++++|++||||+.+|.+|+|+++|+++++++|.+.++..|..
T Consensus 80 ~~L~alLdsl~dgV~svD~~G~I~~~N~aa~~i~~~~~~~~~G~~ 124 (513)
T PRK10820 80 LALSALLEALPEPVLSIDMKSKVELANPASCQLFGQSEERLRNHT 124 (513)
T ss_pred HHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHCCCHHHHCCCC
T ss_conf 899999973899789985998199763999998498968877979
No 173
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=98.07 E-value=7.1e-05 Score=52.29 Aligned_cols=93 Identities=20% Similarity=0.246 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHHH-HHHHCCCC-CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCC
Q ss_conf 7169999999987422-76520678-857999998504210122455667889789999997886688445420232222
Q gi|254780450|r 529 DLSQFEQVLVNLCVNA-HHAIMLKE-SGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF 606 (803)
Q Consensus 529 D~~~l~qvl~NLl~NA-~~A~~~~~-~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ 606 (803)
|..+++-++..++.|| .||.+--. .|.|.|.+.. ..+.+.+.|+|.|+||+ ..++.++|-+
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~---------------~~~~~~i~i~D~G~~~~--~~~~~~~~~~ 99 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSL---------------DDGKLEIRIWDQGPGIE--DLEESLGPGD 99 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE---------------CCCEEEEEEEECCCCCC--CHHHHCCCCC
T ss_conf 999999999999989999763038998659999997---------------09939999995798987--8888538888
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCC
Q ss_conf 101357765303889999985167549999618894
Q gi|254780450|r 607 TTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKG 642 (803)
Q Consensus 607 ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~G 642 (803)
++.+.-+.-|+||.+.++++. ++.+++.++.+
T Consensus 100 ~~~~~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 100 TTAEGLQEGGLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred CCCCCCCCCCCCHHHHHHHHE----EEEEEEECCCC
T ss_conf 888753247313788862110----79999606985
No 174
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=98.05 E-value=9.1e-06 Score=58.59 Aligned_cols=57 Identities=26% Similarity=0.383 Sum_probs=28.4
Q ss_pred HHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHH
Q ss_conf 99998525961999929996897646798642999678045632188808820489999
Q gi|254780450|r 162 AIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQ 220 (803)
Q Consensus 162 ~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~ 220 (803)
++.+++++|.++|.+|.+|+++++|+++++++||+.+++.++ .+.++++|++...+.
T Consensus 3 ~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~--~~~~~~~~~~~~~~~ 59 (67)
T smart00091 3 LRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGK--SLLELIHPEDREEVQ 59 (67)
T ss_pred HHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHH
T ss_conf 999999655798588699948998859999889099999599--899946998999999
No 175
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=97.98 E-value=2.6e-06 Score=62.42 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=32.3
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCC
Q ss_conf 99999852498099995999389810668867099956731561100027
Q gi|254780450|r 28 LETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSR 77 (803)
Q Consensus 28 ~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~ 77 (803)
.++.+++++++++|++|.+|+|+|+|+++++++||+.++..|.....+.+
T Consensus 2 ~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~ 51 (67)
T smart00091 2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIH 51 (67)
T ss_pred HHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCC
T ss_conf 79999996557985886999489988599998890999995998999469
No 176
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=97.76 E-value=0.0024 Score=41.50 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=69.0
Q ss_pred HHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEC
Q ss_conf 99852596199992999689764679864299967804563218880882048999999862002671488899998048
Q gi|254780450|r 164 DYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDN 243 (803)
Q Consensus 164 ~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 243 (803)
..++..+.|++.+|.+|++..+|+.++++||.+..++.+..++ . +.|+-...+....... ......+..+.+.+.
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~N~~ae~~l~~~~~~~~G~~ls--a-~ap~~~~vf~~~~a~~--~~~~~~ev~~~r~g~ 448 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTVNPSAEQILGKPFDQLLGQSLS--A-IAPELEEVFAEAGAAA--RTDKRVEVKLAREGE 448 (712)
T ss_pred HHHHCCCEEEEEECCCCEEEEECCHHHHHHCCCHHHHHCHHHH--H-HHHHHHHHHHHHHHHC--CCCCCEEEECCCCCC
T ss_conf 9981585038997478707762601788846870676440266--4-2137899999765403--877420100014787
Q ss_pred CEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHH
Q ss_conf 9799999955676538885547999998607899999999
Q gi|254780450|r 244 GHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSG 283 (803)
Q Consensus 244 g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l 283 (803)
...+.++.....- + ...+++.++-|||+--.+++..
T Consensus 449 ~rtl~Vq~t~~~~---d-~~~gyVvt~DDITdLV~AQRs~ 484 (712)
T COG5000 449 ERTLNVQATREPE---D-NGNGYVVTFDDITDLVIAQRSA 484 (712)
T ss_pred CEEEEEEEEECCC---C-CCCCEEEEECCHHHHHHHHHHH
T ss_conf 4156667532144---4-6885699963508999999987
No 177
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.70 E-value=0.005 Score=39.27 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHH--HCCCCCCHHHHCCCH-HHHHHHHHHHHHCCC
Q ss_conf 99999999999998525961999929996897646798642999678--045632188808820-489999998620026
Q gi|254780450|r 153 EKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTT--FTSKSISIGDITAGE-GLALIQAIRTEPSHQ 229 (803)
Q Consensus 153 e~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 229 (803)
+.+.+-.++...+++++..|++.+|..|.++.+|.++++|+|+.... ..+ ....+.+.|+ +...+ .. .
T Consensus 208 ~EIa~l~~er~A~l~si~EGviAvd~~G~It~~N~~A~~ll~~~~~~~~~ig--~~i~~v~~p~~~l~~v---l~----~ 278 (537)
T COG3290 208 EEIATLLEERQAMLQSIKEGVIAVDKKGVITLINQAAQKLLGLRQPSGDPIG--RSIVEVLPPDSDLPEV---LE----T 278 (537)
T ss_pred HHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEHHHHHHHHHCCCCCCCCCCC--CCCEEEECCCCCCHHH---HH----C
T ss_conf 9999999999999987636289987898576112889998465676756446--6103761563675778---75----0
Q ss_pred CEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHH
Q ss_conf 714888999980489799999955676538885547999998607899999999999
Q gi|254780450|r 230 KITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIA 286 (803)
Q Consensus 230 ~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~s 286 (803)
+...++..+ +-+|..+ +..+.....+|+..+.+..++|.|+.++.-++|..-
T Consensus 279 ~~~~~~~e~--~~ng~~~---i~nr~pI~~~~~~~GaI~tFRdktei~~L~eqLt~v 330 (537)
T COG3290 279 GKPQHDEEI--RINGRLL---VANRVPIRSGGQIVGAIITFRDKTEIKKLTEQLTGV 330 (537)
T ss_pred CCCCCCHHH--HCCCEEE---EEEECCEEECCEEEEEEEEEECHHHHHHHHHHHHHH
T ss_conf 776311344--1477599---998523788897768999876377899999999989
No 178
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=97.69 E-value=9e-05 Score=51.56 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHCC--CCEEEEEEECEEEEEECCC
Q ss_conf 9999999999999998346--7509998502069983155
Q gi|254780450|r 279 GDPSGTIANMRFNRFFNNI--PMAIASIDKKGRILRTNAH 316 (803)
Q Consensus 279 ~e~~l~~se~rl~~i~e~~--p~~I~~~d~~g~i~~~N~a 316 (803)
...++++. |...+-.- |..+..++.+...+.||-.
T Consensus 268 l~~Ai~~a---Y~~~L~~~r~P~~vL~l~l~p~~vDVNVH 304 (638)
T COG0323 268 LNHALREA---YADYLPRGRYPVFVLFLELDPELVDVNVH 304 (638)
T ss_pred HHHHHHHH---HHHCCCCCCCCEEEEEEEECHHHEECCCC
T ss_conf 99999999---86106688876799999877123000558
No 179
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=97.66 E-value=0.0056 Score=38.91 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999852596199992-99968976467986429996780456321888088204899999986200267
Q gi|254780450|r 152 QEKFFRELQNAIDYLDHSPVGFMSAD-HQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQK 230 (803)
Q Consensus 152 ee~l~~~~~~~~~~le~a~~gi~~~D-~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (803)
..++.++++.-+.++.+||+|+.+.. .||..+..|+.+..++. ....+++.++...... ..
T Consensus 349 a~~l~e~e~fnr~~i~~apvg~~~l~~~dg~~~~~n~~~~~~~~---------------~~~~~~~~~~~~~~~~---~~ 410 (947)
T PRK10841 349 ALRLEEHEQFNRKIVASAPVGICILRTSDGTNILSNELAHNYLN---------------MLTHEDRQRLTQIICG---QQ 410 (947)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECHHHHHHHHH---------------HCCCCHHHHHHHHHHC---CC
T ss_conf 88998788877889861771379997068863310389999876---------------2375528999999861---37
Q ss_pred EEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHH
Q ss_conf 14888999980489799999955676538885547999998607899999999999999
Q gi|254780450|r 231 ITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMR 289 (803)
Q Consensus 231 ~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k~~e~~l~~se~r 289 (803)
....+. ...++....+.++++.-. |+ .-.++++.|||.|++.|++|+++.+-
T Consensus 411 ~~~~~~---~~~~~~~l~~~~~~~ry~---~~-~v~~c~~~Disar~~~e~~L~~a~~A 462 (947)
T PRK10841 411 VNFVDV---LTSNNTNLQISFVHSRYR---NE-NVAICVLVDVSARVKMEESLQEMAQA 462 (947)
T ss_pred CCCEEE---EECCCCEEEEEEEEEEEC---CC-CEEEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 883489---935985799998653126---86-07999998540789999999999999
No 180
>KOG3559 consensus
Probab=97.50 E-value=0.001 Score=44.12 Aligned_cols=233 Identities=15% Similarity=0.099 Sum_probs=126.6
Q ss_pred HHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEE--------
Q ss_conf 852596199992999689764679864299967804563218880882048999999862002671488899--------
Q gi|254780450|r 166 LDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLD-------- 237 (803)
Q Consensus 166 le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-------- 237 (803)
++...--||+++++|+|.|+++.+.--+|.+.-|+.+. +..+++|+.|...+............+.+|-.
T Consensus 85 LqtLDGF~fvva~dGkimYISETaSvhLGLSQVElTGN--si~eYIH~~D~demna~L~~h~H~qeyeIErsfflrmkCv 162 (598)
T KOG3559 85 LQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGN--SIYEYIHPQDHDEMNAVLTAHQHLQEYEIERSFFLRMKCV 162 (598)
T ss_pred HHHHCCEEEEEECCCCEEEEECCEEEEECCEEEEEECC--HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87505459999279988998501134523000465062--3766406012578988876432444300334311234331
Q ss_pred EEEEECC-----E-EEEEE----EEEEEEE-C-CCCCE--EEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9980489-----7-99999----9556765-3-88855--4799999860789999999999999999998346750999
Q gi|254780450|r 238 LRRIDNG-----H-GIPVK----IVHHILA-S-CDGKP--GESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMAIAS 303 (803)
Q Consensus 238 ~~~~~~g-----~-~~~v~----~~~~~~~-~-~~G~~--~~~~~~~~Dit~~k~~e~~l~~se~rl~~i~e~~p~~I~~ 303 (803)
++.+..| . .+.+. +....+. + .++.. .+.+.+.....--. +..+--.++..++.
T Consensus 163 lakrnaglt~sg~kvihcSgylKir~y~~~m~p~dscyqn~glvAvG~slP~sa------------iteikl~sNmFmfr 230 (598)
T KOG3559 163 LAKRNAGLTCSGYKVIHCSGYLKIRQYELDMSPNDSCYQNVGLVAVGHSLPPSA------------ITEIKLHSNMFMFR 230 (598)
T ss_pred HHHHCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCC------------CEEEEECCCEEEEE
T ss_conf 000024653368634860576068996532587745100010699557789541------------14788546507998
Q ss_pred EEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEE
Q ss_conf 85020699831554444454884661798666610111122024666655541123345404887388506899998730
Q gi|254780450|r 304 IDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATL 383 (803)
Q Consensus 304 ~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~ 383 (803)
...|-.+++......++. |+++.++++++++..+|..|...+..+....+.. +....--+++..+.+.|.|+......
T Consensus 231 aslDlkliF~D~rv~qlt-gYepqdliektLY~~ih~~D~~~lr~~H~~ll~k-GqvtTkYYR~l~k~ggwvwvqsyat~ 308 (598)
T KOG3559 231 ASLDLKLIFLDSRVHQLT-GYEPQDLIEKTLYHHIHGCDSFHLRCAHHLLLVK-GQVTTKYYRFLLKQGGWVWVQSYATF 308 (598)
T ss_pred EECCEEEEEHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHCCCCEEEEEEEEEE
T ss_conf 621157885044678860-8994225667788875111288998888999861-43140788987707853999974468
Q ss_pred CCCCCCC---CEEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 4566776---138999998502321122101234
Q gi|254780450|r 384 DRSTEAP---EEQAILYTVEITEQKALEARMAQT 414 (803)
Q Consensus 384 ~~~~~~~---~~~~i~~~~DITerk~~E~~L~qa 414 (803)
..+.... ....|-++..+.|-|.+...+.|.
T Consensus 309 vHnSrSSR~~fivSvnyVls~~EyK~LqLsl~Q~ 342 (598)
T KOG3559 309 VHNSRSSRPHFIVSVNYVLSELEYKELQLSLEQV 342 (598)
T ss_pred EECCCCCCCEEEEEEEEEEEHHHHHHHEECHHHH
T ss_conf 8425457740577665652001033424006664
No 181
>KOG3753 consensus
Probab=97.32 E-value=0.0017 Score=42.59 Aligned_cols=295 Identities=13% Similarity=0.058 Sum_probs=143.1
Q ss_pred EEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHC---CCCEEEEEEEEEEEECCEEEE
Q ss_conf 19999299968976467986429996780456321888088204899999986200---267148889999804897999
Q gi|254780450|r 172 GFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPS---HQKITTLDLDLRRIDNGHGIP 248 (803)
Q Consensus 172 gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~~~~g~~~~ 248 (803)
.+++-+.+|+++|+.+.+..++||.++-+. +..|.|++|+.|...+........ ......-+....-.-.-..+.
T Consensus 194 ~~~vS~~dG~iLyis~q~a~ilg~krDv~s--~a~FvdflapqD~~vF~sfta~~~lp~ws~~s~~ds~~~~c~~~ks~f 271 (1114)
T KOG3753 194 VVAVSFLDGRILYISEQAALILGCKRDVLS--SAKFVDFLAPQDVGVFYSFTARYKLPLWSMGSSADSFTQECAEEKSFF 271 (1114)
T ss_pred EEEEECCCCCEEEEECHHHHHCCCCHHHHC--CCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCEE
T ss_conf 798860579679951003332167402212--530543205333201120125556742111333330135555300211
Q ss_pred EEEEEEEEECCCC--CEEEEEEEEEEHHHHHHHHHHHHH--HHHHHH------HHHHCCCCEEEEE--EECEEEEEECCC
Q ss_conf 9995567653888--554799999860789999999999--999999------9983467509998--502069983155
Q gi|254780450|r 249 VKIVHHILASCDG--KPGESRTVVVSRKNCDSGDPSGTI--ANMRFN------RFFNNIPMAIASI--DKKGRILRTNAH 316 (803)
Q Consensus 249 v~~~~~~~~~~~G--~~~~~~~~~~Dit~~k~~e~~l~~--se~rl~------~i~e~~p~~I~~~--d~~g~i~~~N~a 316 (803)
.++...+-....- .+.+..-.+..+-++..++....- -.+|.. +|--+-. ||.. .+.+.+..+..+
T Consensus 272 cRisgr~~~~~~~~y~PFRl~pyl~ev~~~~~~~s~~ccLllaerihSgYeAPrIps~Kr--iFtT~HTptClf~hVDea 349 (1114)
T KOG3753 272 CRISGRKDRENEIRYHPFRLTPYLVEVRDQQGAESQPCCLLLAERIHSGYEAPRIPSNKR--IFTTTHTPTCLFQHVDEA 349 (1114)
T ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCC--EEEECCCCCCEEEECCHH
T ss_conf 454126677676566761122235775244466767643211234551465676786543--467403786003413254
Q ss_pred CCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCC--CCCCEEEECCCCEEEEEEEEEEECCC-CCCCCEE
Q ss_conf 44444548846617986666101111220246666555411233--45404887388506899998730456-6776138
Q gi|254780450|r 317 FLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDI--SPIDSPHPQDENRYFRFYISATLDRS-TEAPEEQ 393 (803)
Q Consensus 317 ~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~ 393 (803)
...++ ||-+.+++|.++..++|++|+..+.+.....+...+.. ..-.+++....|.++.....+....+ +..+...
T Consensus 350 AVp~L-GyLPqDLIG~sil~f~H~eDr~vm~q~H~~v~q~~G~p~F~~sp~Rf~aqNG~yv~ldTeWSsFVNPWSRKieF 428 (1114)
T KOG3753 350 AVPLL-GYLPQDLIGTSILAFVHPEDRHVMVQIHQKVLQSGGKPVFSHSPIRFCAQNGSYVRLDTEWSSFVNPWSRKIEF 428 (1114)
T ss_pred HHHHH-CCCCHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECHHHHCCCHHHHHEEE
T ss_conf 42232-04726552641655316774289999999999857987645465000103886799733044305810210132
Q ss_pred EEEEEE--------ECCC------CCCCCCCHHHHHHHH---------------HHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999998--------5023------211221012344444---------------46876303425664158999999999
Q gi|254780450|r 394 AILYTV--------EITE------QKALEARMAQTQKLN---------------AVGTLAGGIAHDFNNVLTAILLSSDH 444 (803)
Q Consensus 394 ~i~~~~--------DITe------rk~~E~~L~qa~~~~---------------a~~~~~a~isHelr~pL~~I~g~~~l 444 (803)
+|+..+ |+-+ +.. ....|.-.-+ ..+.+-+..||| +|..+..+++.
T Consensus 429 VvGRHrVrt~PlneDVFaa~~pt~~~n--~~~iqel~eqI~edlLqpv~~svSsg~~svg~~~S~~---~l~s~~SSSe~ 503 (1114)
T KOG3753 429 VVGRHRVRTGPLNEDVFAAPPPTIQSN--DTDIQELAEQIFEDLLQPVHNSVSSGYGSVGSLGSGE---GLSSRASSSEV 503 (1114)
T ss_pred EEEECEEECCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCCCCCHHH
T ss_conf 532032211676645115899975557--7557999999999875440145787756553345775---43343430011
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9850799847888899999998888764300454212
Q gi|254780450|r 445 LLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSR 481 (803)
Q Consensus 445 l~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr 481 (803)
++ .+..+.++.++....+++.+.++++...++
T Consensus 504 lg-----~~~s~~~l~~~l~~~n~lk~~~r~s~~~ge 535 (1114)
T KOG3753 504 LG-----HETSRFTLQQSLRRVNKLKNRGRQSRESGE 535 (1114)
T ss_pred CC-----CCCHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 16-----840366899872320266666667765312
No 182
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.28 E-value=0.016 Score=35.63 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=28.2
Q ss_pred HHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCC
Q ss_conf 998346750999850206998315544444548846617986666101
Q gi|254780450|r 292 RFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVH 339 (803)
Q Consensus 292 ~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~ 339 (803)
.++++.++++..+|.+|+++.+|+...+++ +.......|+.+.+++.
T Consensus 207 ~~l~~~~~gvla~d~~G~i~~~N~~A~~~L-~~~~~~~~g~~~~~~~~ 253 (639)
T PRK11388 207 ALLESMDDGVIAWDEQGNLQFLNAQAARLL-RLDATASQGRAITELLT 253 (639)
T ss_pred HHHCCCCCCEEEECCCCCEEHHHHHHHHHH-CCCHHHHCCCCHHHHHC
T ss_conf 886488762899889991740048999885-98845644764998708
No 183
>KOG0501 consensus
Probab=97.24 E-value=0.0043 Score=39.76 Aligned_cols=117 Identities=13% Similarity=0.217 Sum_probs=69.9
Q ss_pred HHHHHHHHHH--CCCEEEEE-CC---CCCEEEEEHHHHHHCCCCHHHHCCCCHH--HHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 8999999852--49809999-59---9938981066886709995673156110--002787616789999999832432
Q gi|254780450|r 26 IPLETIFMDS--EPEGILIT-NE---RGHIIYANNAYNALTNAVWNKRTKSLES--LLSRNQEASEALYRLINSLRLKSE 97 (803)
Q Consensus 26 ~~~~r~lld~--~~d~i~v~-D~---~G~i~~~N~a~~~l~G~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 97 (803)
+.++.-++-- .+|.-|+. +. |.-|+|+|+.|+++.||.+.+.+..... +..+.-..-..+.++.+.......
T Consensus 13 NTFLENiiRRsn~~dtsFlL~NAQiVD~PiVY~NdgFcKlsGY~RAevMQKs~tc~FMyGEltdk~ti~k~~~t~eN~~~ 92 (971)
T KOG0501 13 NTFLENIIRRSNNADTSFLLANAQIVDWPIVYCNDGFCKLSGYHRAEVMQKSCTCSFMYGELTDKGTIEKVRQTLENYET 92 (971)
T ss_pred HHHHHHHHHHCCCCCCCEEECCCEEECCCEEEECCCCHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 56899998642687730144355253140588347621124745998862564233320133451169999999975431
Q ss_pred CCEEEEEEECCEEECCCCCEEEEEEEEEEEEECC-CCCEEEEEEEEEECHHHHH
Q ss_conf 3203898601000048986799999999998237-8806999999978338899
Q gi|254780450|r 98 GSEEFRLMQSLNNYSQNSEPHWYRLKARVLPISL-HKEKLLYAWRITDITSERK 150 (803)
Q Consensus 98 ~~~e~~~~~~~~~~~~~g~~~w~~i~~~~~~~~~-~~~~~~~~~~i~DIT~~k~ 150 (803)
...|.- .+.++..+.|+.+...|. .. ....++++.++.|||.-|+
T Consensus 93 ~qfEil------lyKKN~TPvW~~vqiAPI--rNe~d~VVLfLctFkDIT~~KQ 138 (971)
T KOG0501 93 NQFEIL------LYKKNRTPVWLLVQIAPI--RNEKDKVVLFLCTFKDITALKQ 138 (971)
T ss_pred CCEEEE------EEECCCCCEEEEEEEECC--CCCCCEEEEEEEECCCCHHHCC
T ss_conf 212367------661589855999984023--5777518999951146443238
No 184
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=97.03 E-value=0.016 Score=35.70 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=59.6
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCH-HHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 89999998524980999959993898106688670999567315611-00027876167899999998324323203898
Q gi|254780450|r 26 IPLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLE-SLLSRNQEASEALYRLINSLRLKSEGSEEFRL 104 (803)
Q Consensus 26 ~~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~ 104 (803)
+.....++|+.+.++++.|.+|+|.|+|++++.++|.+.-...+..- .++........ -+.+....+. .-.++++
T Consensus 6 ~~~~~~~Ln~~~~pVl~vd~~~~i~yaN~aAe~~~~~Sa~~L~~~~l~~l~~~gs~ll~---ll~q~~~~~~-~~~~~~v 81 (363)
T COG3852 6 EPLAGAILNNLINPVLLVDDELAIHYANPAAEQLLAVSARRLAGTRLSELLPFGSLLLS---LLDQVLERGQ-PVTEYEV 81 (363)
T ss_pred CCCCHHHHHCCCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHH---HHHHHHHHCC-CCCCCEE
T ss_conf 66417687455785699827782896088899999977888824877887177728899---9989998358-8510102
Q ss_pred EECCEEECCCCCEEEEEEEEEEEEE
Q ss_conf 6010000489867999999999982
Q gi|254780450|r 105 MQSLNNYSQNSEPHWYRLKARVLPI 129 (803)
Q Consensus 105 ~~~~~~~~~~g~~~w~~i~~~~~~~ 129 (803)
.-. .+|....+.+.+.+.+.
T Consensus 82 ~l~-----~~g~~~~v~~~v~~v~~ 101 (363)
T COG3852 82 TLV-----ILGRSHIVDLTVAPVPE 101 (363)
T ss_pred EEE-----ECCCCCEEEEEEEECCC
T ss_conf 442-----07865237899862268
No 185
>PRK05218 heat shock protein 90; Provisional
Probab=96.96 E-value=0.0017 Score=42.51 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=8.0
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7979999999999985
Q gi|254780450|r 784 KPFSLKQLATSVHELL 799 (803)
Q Consensus 784 KP~~~~~L~~~i~~~L 799 (803)
.|=++......+.++|
T Consensus 597 ~~~dp~~f~~r~~~ll 612 (612)
T PRK05218 597 SLEDPAAFVKRLNELL 612 (612)
T ss_pred CCCCHHHHHHHHHHHC
T ss_conf 9618999999999759
No 186
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=96.92 E-value=0.0071 Score=38.18 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=24.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 5699976988999999999998898999989989998999865999548998587889888999999998
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRK 751 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~ 751 (803)
.+||-+--++.+-.-+..+.. +..-.+.+..+... -||-.++-=+++--|=.+.+.+|-+
T Consensus 603 k~iLEINp~HplIk~L~~~~~--------~d~~d~~~kd~a~l--L~D~AlL~eG~~leDP~~fa~Rin~ 662 (701)
T PTZ00272 603 KKTMELNPRHPIIKELRRRVG--------ADENDKAVKDLVFL--LFDTSLLTSGFQLEDPTGYAERINR 662 (701)
T ss_pred CCEEEECCCCHHHHHHHHHHH--------CCCCHHHHHHHHHH--HHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 845898999989999999876--------48563889999999--9988898689997798999999999
No 187
>KOG0519 consensus
Probab=96.84 E-value=0.0038 Score=40.13 Aligned_cols=214 Identities=17% Similarity=0.079 Sum_probs=131.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CEEEEEHHHHH
Q ss_conf 87630342566415899999999998507998478888999999988887643004542120058----43585346789
Q gi|254780450|r 421 GTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM----RLTVLNLTEVI 496 (803)
Q Consensus 421 ~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~----~~~~~~l~~~i 496 (803)
..+...++|..++|.+.+++...+++...-..+.+.--+....++......+++.-.+.++...+ ....+.+..+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~~~~~~~~~gt~~~~~i~~~l~~l~ 466 (786)
T KOG0519 387 IDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMRSSNVFTSLIQADPDITRLYGGTGLGESIVFSLVELM 466 (786)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHEEECCCCCEEEEECCCCHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 67888741331242204212235766520223666406850233046555451466100345687645332223288998
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCC-EEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC----C---
Q ss_conf 999999987503568169998148972-26998716999999998742276520678857999998504210----1---
Q gi|254780450|r 497 GNLRMMIQKLISEPPQVKLTVDYERDL-WGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTE----I--- 568 (803)
Q Consensus 497 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~----~--- 568 (803)
........... .+....+.+....+. ..+.+|..++.|++.+..+|+..-.+++.+.+..++...-.... .
T Consensus 467 ~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~ 545 (786)
T KOG0519 467 SGEISDISCIS-LGKTFSFTLDLLTNLPKSVVGDEKRLFQIILDFNGMLALLIDTKLGREQIFQVLAELLGISVDVSLSL 545 (786)
T ss_pred HHHHHHHHHCC-CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCH
T ss_conf 86743211003-47522233123568873101103445445554301222320033576206999801266541114431
Q ss_pred -CCCCCCCCCCCC-EEEEEEEECCCCCCHHHHHHCCCCCCC-----CCCCCCCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf -224556678897-899999978866884454202322221-----01357765303889999985167549999
Q gi|254780450|r 569 -HTFNYSDLPTKD-MVLVEVEDTGIGMSPDIMEKIFEPFFT-----TKKVGEGTGLGLSVVYGIIRQSGGYILPE 636 (803)
Q Consensus 569 -~~~~~~~~~~~~-~v~i~V~D~G~GI~~~~~~~iFepF~t-----tk~~g~GtGLGL~i~~~iv~~~gG~i~v~ 636 (803)
..+.......-+ ++.+.++++..|+........|.-|.. +|. +.+.++.++.|...++.+.|.+++.
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (786)
T KOG0519 546 SLAFWFLDLSLSDLEVCKQIEDNEEGSNNGDISSSNPLHKSLRDLTSKL-SSGSGLSLALCPENSQLMEGNIGLV 619 (786)
T ss_pred HHHHHHCCCCCCCHHHHEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCC-CCCCCCCCCCCHHHHHHHHCCCCCC
T ss_conf 0566643666100244223310303467777204565540034542002-4555420123656777753143355
No 188
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.046 Score=32.48 Aligned_cols=188 Identities=18% Similarity=0.187 Sum_probs=107.1
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCE-EEEEHHHHHH
Q ss_conf 76303425664158999999999985079984788889999999888876430045421200---5843-5853467899
Q gi|254780450|r 422 TLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQ---TMRL-TVLNLTEVIG 497 (803)
Q Consensus 422 ~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~---~~~~-~~~~l~~~i~ 497 (803)
-+.+.+.|||=.|..+|..-.++|-+ +..|. .-+..|..|+..+ .+.|.|+|+- ++.. ..+|-.+.-.
T Consensus 17 lLcsRvCHDiISPvgAInnGLeLLde--g~add--DAm~LIrsSArna----s~rLqFaR~AFGAsgSag~~iDtgeaek 88 (214)
T COG5385 17 LLCSRVCHDIISPVGAINNGLELLDE--GGADD--DAMDLIRSSARNA----SVRLQFARLAFGASGSAGASIDTGEAEK 88 (214)
T ss_pred HHHHHHHHHCCCCHHHHHCHHHHHCC--CCCCH--HHHHHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 99998875404817776032566426--89647--8999999976517----8887788987255554333566066999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 99999987503568169998148972269987169999999987422765206788579999985042101224556678
Q gi|254780450|r 498 NLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLP 577 (803)
Q Consensus 498 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~ 577 (803)
-....+. ..+-+++++.++.+. ...+. ..++||.-=|--| .|.||.+.++.++.+.+
T Consensus 89 ~A~~~~a-----~ekpe~~W~g~r~~~----~Kn~v-kllLNl~lia~~a--iPrGG~~~vtle~~e~d----------- 145 (214)
T COG5385 89 AAQDFFA-----NEKPELTWNGPRAIL----PKNRV-KLLLNLFLIAYGA--IPRGGSLVVTLENPETD----------- 145 (214)
T ss_pred HHHHHHH-----CCCCCCCCCCCHHHC----CCCHH-HHHHHHHHHHCCC--CCCCCEEEEEEECCCCC-----------
T ss_conf 9999986-----238712355874224----75058-9999999997055--78898268995367767-----------
Q ss_pred CCCEEEEEEEECCCC--CCHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 897899999978866--884454202322221013577---6530388999998516754999961889429999943
Q gi|254780450|r 578 TKDMVLVEVEDTGIG--MSPDIMEKIFEPFFTTKKVGE---GTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 578 ~~~~v~i~V~D~G~G--I~~~~~~~iFepF~ttk~~g~---GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
-+|++.-.|+= .||++++-+ +.....+ +--.-=+-.--+++.-|++|.|++.. .-..|+-+.|
T Consensus 146 ----~rfsi~akG~m~Rvppk~lel~-----~G~~~eE~vdahsVQpyYt~lLa~eAgm~I~v~~~~-e~iv~~A~v~ 213 (214)
T COG5385 146 ----ARFSIIAKGRMMRVPPKFLELH-----SGEPPEEAVDAHSVQPYYTLLLAEEAGMTISVHATA-ERIVFTAWVV 213 (214)
T ss_pred ----CEEEEEECCCCCCCCHHHHHHH-----CCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC-CEEEEEEECC
T ss_conf ----4389983275344798998650-----599842247875303999999999709868999636-4379997514
No 189
>PRK13566 anthranilate synthase; Provisional
Probab=96.67 E-value=0.021 Score=34.81 Aligned_cols=83 Identities=20% Similarity=0.194 Sum_probs=59.2
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEEC--CCCCCCHHHHHHHHH-HHC
Q ss_conf 34787569997698899999999999889899998998999899986599954899858--788988899999999-868
Q gi|254780450|r 677 LTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDV--VMPEMDGPTLLRELR-KTY 753 (803)
Q Consensus 677 ~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~--~mp~m~G~~~~~~ir-~~~ 753 (803)
..+.+.+||+||..++---.+...|+..|++|.+..++ .+.+.+.+. .||+|++-= .-|.--|.. ..|. ...
T Consensus 519 ~~~~g~rVLlVDn~DSFvhtLa~YlrqlGAeV~vvR~d-~~~~~l~~~--~pD~vvlSPGPG~P~d~g~~--~~i~~~~~ 593 (724)
T PRK13566 519 AVGSGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYP-VAEEILDRV--NPDLVVLSPGPGRPEDFDCK--ATIDAALA 593 (724)
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEEECC-CCHHHHHHH--CCCEEEECCCCCCCHHCCCH--HHHHHHHH
T ss_conf 67877579998465327999999999819879998189-876777631--88989987999790005585--99999985
Q ss_pred CCCCEEE-EECC
Q ss_conf 9982999-9067
Q gi|254780450|r 754 PSLKFIF-ISGY 764 (803)
Q Consensus 754 ~~~~ii~-~t~~ 764 (803)
.++||.- |=|+
T Consensus 594 ~~iPilGVCLGh 605 (724)
T PRK13566 594 RNLPIFGVCLGL 605 (724)
T ss_pred CCCCEEEECCCH
T ss_conf 799879977127
No 190
>KOG3560 consensus
Probab=96.61 E-value=0.058 Score=31.75 Aligned_cols=216 Identities=14% Similarity=0.112 Sum_probs=115.4
Q ss_pred HHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHC------CCCEEEEE----
Q ss_conf 85259619999299968976467986429996780456321888088204899999986200------26714888----
Q gi|254780450|r 166 LDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPS------HQKITTLD---- 235 (803)
Q Consensus 166 le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~e---- 235 (803)
++...--+.++..+|.|.|++....+.+|+--.+++ +-+..|++|.||++.+.....-.. .......|
T Consensus 117 LqsLnGF~lVvt~eg~ifyAS~tIedYLGFhQSDV~--HQsVYdlIHseDR~dfqrQLhwa~~ppq~~~s~q~~~e~~~~ 194 (712)
T KOG3560 117 LQSLNGFALVVTAEGEIFYASATIEDYLGFHQSDVM--HQSVYDLIHSEDRQDFQRQLHWAMDPPQVVFSQQPPLETGDD 194 (712)
T ss_pred HHHCCCEEEEEECCCEEEEEHHHHHHHHCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC
T ss_conf 975277599995383699740017765352300101--045887742220999999876425874332057873113664
Q ss_pred EEEEEEECCEEEE------------EEEEEEEEECCC--------CCE-------------------EEEEEEEEEHHHH
Q ss_conf 9999804897999------------999556765388--------855-------------------4799999860789
Q gi|254780450|r 236 LDLRRIDNGHGIP------------VKIVHHILASCD--------GKP-------------------GESRTVVVSRKNC 276 (803)
Q Consensus 236 ~~~~~~~~g~~~~------------v~~~~~~~~~~~--------G~~-------------------~~~~~~~~Dit~~ 276 (803)
-.++....|..++ +++ .+.+.+.. |+. .....+..-.---
T Consensus 195 ~~~~~~~~~d~~ppens~yleRcficR~-RCLLDnTsGFLamdfqGklk~LhGqkkk~~~g~~lpP~LaLf~iatP~~pP 273 (712)
T KOG3560 195 AILRAQEWGDGTPPENSAYLERCFICRF-RCLLDNTSGFLAMDFQGKLKFLHGQKKKAPSGAMLPPRLALFCIATPFLPP 273 (712)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHEEEE-EEEECCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 1001101676678651057764220267-776538755056621232100027744488876478850478985377893
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999999999834675099985020699831554444454884661798666610111122024666655541
Q gi|254780450|r 277 DSGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQ 356 (803)
Q Consensus 277 k~~e~~l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (803)
-..|-..+. . +|.+- .-.|+..+.+......++ ++.+.++.+...++++|-+|...+.++..+.+.
T Consensus 274 S~lEi~~k~--~----i~rtK------hklDfa~vs~Dak~k~~l-gy~eaEL~~m~gY~lvH~~D~~y~Aeah~e~ik- 339 (712)
T KOG3560 274 SALEIKMKS--A----ILRTK------HKLDFALVSMDAKVKATL-GYCEAELHGMPGYNLVHVEDKVYMAEAHSEGIK- 339 (712)
T ss_pred HHHHHHHHH--H----HHHCC------CCCCCCEECCCHHHHHHH-CCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHH-
T ss_conf 165410366--6----65200------225654003213355543-201544057876331232234553588999863-
Q ss_pred CCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEE
Q ss_conf 1233454048873885068999987304566776138999998
Q gi|254780450|r 357 KSDISPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTV 399 (803)
Q Consensus 357 ~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~ 399 (803)
.++..-+-++...+.+||.|+-.++...+. .+....+|.+-.
T Consensus 340 tgeSGmlvyR~qtk~grw~wvqssarllyk-ngkPD~vi~thr 381 (712)
T KOG3560 340 TGESGMLVYREQTKAGRWAWVQSSARLLYK-NGKPDLVIDTHR 381 (712)
T ss_pred CCCCCEEEEEEEECCCCEEEEECCCEEEEE-CCCCCEEEECCC
T ss_conf 587644899986047837985346624341-688888884587
No 191
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.46 E-value=0.071 Score=31.13 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=79.7
Q ss_pred HHHHHCCCEEEEECCCCCEEEEEH--HHHHHCCCCHHHHCC-CCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 998524980999959993898106--688670999567315-61100027876167899999998324323203898601
Q gi|254780450|r 31 IFMDSEPEGILITNERGHIIYANN--AYNALTNAVWNKRTK-SLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQS 107 (803)
Q Consensus 31 ~lld~~~d~i~v~D~~G~i~~~N~--a~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~ 107 (803)
..+....-.++++|.+|.+++..- .+.+-. +..+ .+...|....--.- ..-.++.. ...+.+...
T Consensus 66 ~~l~~~~~~v~l~D~~G~vL~~~G~~~~~~~~-----~~~~~~~G~~wsE~~~GTN---aiGtaL~~----~~pv~V~g~ 133 (639)
T PRK11388 66 EYMEPRECALLILDETGCILSRNGDPQTLQQL-----SALGFNDGTYCAEGIIGTN---ALSLAAIS----GQPVQTMGD 133 (639)
T ss_pred HHHCCCCEEEEEECCCCEEEEEECCHHHHHHH-----HHCCCCCCCEEEECCCCCC---HHHHHHHH----CCEEEECHH
T ss_conf 98667983999998995299983598898899-----9669767864222588865---89999974----983898156
Q ss_pred CEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEECHHH----------------HHHHHHHHH---------HHHHH
Q ss_conf 00004898679999999999823788069999999783388----------------999999999---------99999
Q gi|254780450|r 108 LNNYSQNSEPHWYRLKARVLPISLHKEKLLYAWRITDITSE----------------RKDQEKFFR---------ELQNA 162 (803)
Q Consensus 108 ~~~~~~~g~~~w~~i~~~~~~~~~~~~~~~~~~~i~DIT~~----------------k~~ee~l~~---------~~~~~ 162 (803)
.+.. .. +..+++...|+.+..+....+ -|+|.. +..+..++. ....+
T Consensus 134 EHf~--~~---~~~~sC~aaPI~d~~G~l~Gv---ldlt~~~~~~~~~~l~lv~~~a~~Ie~~L~~~~~~~~~~~~l~~~ 205 (639)
T PRK11388 134 QHFK--QA---LHNWAFCATPVFDSKGRLTGT---IALACPVEQTSAADLPLTLAIAREVGNLLLTDSLLAESNRHLNQL 205 (639)
T ss_pred HHHH--HH---CCCCEEEEEEEECCCCCEEEE---EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7676--75---058867775678899978999---976787666784359999999999999999999999999998776
Q ss_pred HHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCC
Q ss_conf 99985259619999299968976467986429996780456321888088
Q gi|254780450|r 163 IDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITA 212 (803)
Q Consensus 163 ~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~ 212 (803)
..+++....|++.+|.+|+++++|+.+++++|.+.....+.. +.+++.
T Consensus 206 ~~~l~~~~~gvla~d~~G~i~~~N~~A~~~L~~~~~~~~g~~--~~~~~~ 253 (639)
T PRK11388 206 NALLESMDDGVIAWDEQGNLQFLNAQAARLLRLDATASQGRA--ITELLT 253 (639)
T ss_pred HHHHCCCCCCEEEECCCCCEEHHHHHHHHHHCCCHHHHCCCC--HHHHHC
T ss_conf 888648876289988999174004899988598845644764--998708
No 192
>pfam08670 MEKHLA MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=96.44 E-value=0.073 Score=31.05 Aligned_cols=105 Identities=12% Similarity=0.011 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHCCCEEEEEC--CCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 18999999852498099995--9993898106688670999567315611000278761678999999983243232038
Q gi|254780450|r 25 KIPLETIFMDSEPEGILITN--ERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEF 102 (803)
Q Consensus 25 ~~~~~r~lld~~~d~i~v~D--~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~ 102 (803)
.++.++.+. +.|++|+-.+ ++-.++|+|++.++|++++.++..+.+-+....+.+..+...-+.+..+.|-....
T Consensus 30 ~~~~~k~L~-~ap~ail~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~tae~~~r~~r~~~l~~v~~qG~~~~y-- 106 (148)
T pfam08670 30 GDSLLKALW-HHPDAVLCHSLKADPVFNYANQAALDLLETTWVELQDLPSRKTAEESGRKERCSELAKVMQQGFACLY-- 106 (148)
T ss_pred HHHHHHHHH-CCCCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCC--
T ss_conf 789999996-39978997679989746541499999966889998459666516835289999989999981863378--
Q ss_pred EEEECCEEECCCCCEEEEEEEEEEEEECCCCCEE
Q ss_conf 9860100004898679999999999823788069
Q gi|254780450|r 103 RLMQSLNNYSQNSEPHWYRLKARVLPISLHKEKL 136 (803)
Q Consensus 103 ~~~~~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~ 136 (803)
.-......|...++.-...+....+++...
T Consensus 107 ----~GiRiss~Grrf~ie~a~vW~v~d~~g~~~ 136 (148)
T pfam08670 107 ----SGVRISSMGRRFSIEQAVAWKLLDEDGAYH 136 (148)
T ss_pred ----CEEEECCCCCEEEECCEEEEEEECCCCCEE
T ss_conf ----816882799889991279988885889889
No 193
>KOG3560 consensus
Probab=96.37 E-value=0.05 Score=32.23 Aligned_cols=226 Identities=12% Similarity=0.067 Sum_probs=110.9
Q ss_pred HHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCC-----CCCC----E
Q ss_conf 999852498099995999389810668867099956731561100027876167899999998324-----3232----0
Q gi|254780450|r 30 TIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLK-----SEGS----E 100 (803)
Q Consensus 30 r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~----~ 100 (803)
+-++.+..--++|+..+|.|.|+....+..+|+...+++-+....+++..|..+...++..++.-- .... .
T Consensus 114 e~lLqsLnGF~lVvt~eg~ifyAS~tIedYLGFhQSDV~HQsVYdlIHseDR~dfqrQLhwa~~ppq~~~s~q~~~e~~~ 193 (712)
T KOG3560 114 ELLLQSLNGFALVVTAEGEIFYASATIEDYLGFHQSDVMHQSVYDLIHSEDRQDFQRQLHWAMDPPQVVFSQQPPLETGD 193 (712)
T ss_pred HHHHHHCCCEEEEEECCCEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCC
T ss_conf 87897527759999538369974001776535230010104588774222099999987642587433205787311366
Q ss_pred E-EEEEECCEEEC-CCCCE---EEEEEEEEEEEECCCC--------------------------CEEEEEE-EEEEC---
Q ss_conf 3-89860100004-89867---9999999999823788--------------------------0699999-99783---
Q gi|254780450|r 101 E-FRLMQSLNNYS-QNSEP---HWYRLKARVLPISLHK--------------------------EKLLYAW-RITDI--- 145 (803)
Q Consensus 101 e-~~~~~~~~~~~-~~g~~---~w~~i~~~~~~~~~~~--------------------------~~~~~~~-~i~DI--- 145 (803)
. ......+.... .+... +-+....+.+.+...| .+.+.+. ...-.
T Consensus 194 ~~~~~~~~~~d~~ppens~yleRcficR~RCLLDnTsGFLamdfqGklk~LhGqkkk~~~g~~lpP~LaLf~iatP~~pP 273 (712)
T KOG3560 194 DAILRAQEWGDGTPPENSAYLERCFICRFRCLLDNTSGFLAMDFQGKLKFLHGQKKKAPSGAMLPPRLALFCIATPFLPP 273 (712)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHEEEEEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 41001101676678651057764220267776538755056621232100027744488876478850478985377893
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHH-
Q ss_conf -388999999999999999998525961999929996897646798642999678045632188808820489999998-
Q gi|254780450|r 146 -TSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIR- 223 (803)
Q Consensus 146 -T~~k~~ee~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~- 223 (803)
+-+-+..+.+.++.- ..|+..+-+......++||...|+.+ +.-.+++|-+|...+....
T Consensus 274 S~lEi~~k~~i~rtKh----------------klDfa~vs~Dak~k~~lgy~eaEL~~--m~gY~lvH~~D~~y~Aeah~ 335 (712)
T KOG3560 274 SALEIKMKSAILRTKH----------------KLDFALVSMDAKVKATLGYCEAELHG--MPGYNLVHVEDKVYMAEAHS 335 (712)
T ss_pred HHHHHHHHHHHHHCCC----------------CCCCCEECCCHHHHHHHCCCHHHCCC--CCCCCEEEHHHHHHHHHHHH
T ss_conf 1654103666652002----------------25654003213355543201544057--87633123223455358899
Q ss_pred HHHCCCCEEEEEEEEEEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEHHH
Q ss_conf 6200267148889999804897999999556765388855479999986078
Q gi|254780450|r 224 TEPSHQKITTLDLDLRRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKN 275 (803)
Q Consensus 224 ~~~~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~ 275 (803)
.....+....+-+++ ..++|++.|+....+.+ ..+|++..++......++
T Consensus 336 e~iktgeSGmlvyR~-qtk~grw~wvqssarll-ykngkPD~vi~thr~l~D 385 (712)
T KOG3560 336 EGIKTGESGMLVYRE-QTKAGRWAWVQSSARLL-YKNGKPDLVIDTHRGLGD 385 (712)
T ss_pred HHHHCCCCCEEEEEE-EECCCCEEEEECCCEEE-EECCCCCEEEECCCCCCC
T ss_conf 986358764489998-60478379853466243-416888888845877651
No 194
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=96.37 E-value=0.042 Score=32.73 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999999988989999899899989998659995489985878898889999999986899829999067
Q gi|254780450|r 692 SVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGY 764 (803)
Q Consensus 692 ~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~ 764 (803)
.++. +...|+..|++|+.+.+-.+++..++.+ .+...|++|+ ...-.++++.||.+++++||.+++-.
T Consensus 5 ~~~~-l~~~l~~~~~~vv~~~~~~d~~~~~~~~-~~i~avil~~---~~~~~~ll~~ir~~n~~lPvFl~~~~ 72 (111)
T pfam03709 5 ASRE-LAEALEATGREVVDATSTDDLLSLIETF-TDIAAVVLSW---DDEARGLLDEIRRRNFDLPVFLLAET 72 (111)
T ss_pred HHHH-HHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCCEEEEEE---CHHHHHHHHHHHHHCCCCCEEEEECH
T ss_conf 5899-9999997898899748789999999838-7876899984---60689999999974789998988441
No 195
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.014 Score=36.20 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=81.2
Q ss_pred HHHHHHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 99999998346750999850206998315544444548846617986666101111220246666555411233454048
Q gi|254780450|r 287 NMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSP 366 (803)
Q Consensus 287 e~rl~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 366 (803)
.+.+.++|.+.|.-|..+|.++++-+.|+. .++|..+ + ..+|+.+...-+|.....+...+.....|..+... ..
T Consensus 289 ~~e~naif~~lP~Ditfvdk~diV~ffs~~-~rif~rt-~-sviGr~v~~chpPksv~iv~ki~~~fksG~kd~~e--fw 363 (409)
T COG2461 289 LEELNAIFKHLPVDITFVDKNDIVRFFSGG-ERIFPRT-P-SVIGRRVQLCHPPKSVHIVEKILKDFKSGEKDFAE--FW 363 (409)
T ss_pred HHHHHHHHHHCCCCEEEECCCCEEEECCCC-CEECCCC-H-HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH--HH
T ss_conf 999999995388732785456627844896-3201337-6-76187155789984278999999986537745677--74
Q ss_pred EECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 87388506899998730456677613899999850232112210
Q gi|254780450|r 367 HPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEAR 410 (803)
Q Consensus 367 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITerk~~E~~ 410 (803)
. ...++. ++++....++.+|...+++-++.|||+-|++|-+
T Consensus 364 ~-~~~~~~--i~i~Y~av~de~ge~~g~le~~qdi~~i~~l~ge 404 (409)
T COG2461 364 I-NMGDKF--IHIRYFAVKDEEGEYLGTLEVVQDITRIKELEGE 404 (409)
T ss_pred C-CCCCCE--EEEEEEEEECCCCCEEEEEHHHHHHHHHHHCCCH
T ss_conf 5-578735--8999999875888366542232203777742340
No 196
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=96.11 E-value=0.11 Score=29.87 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=7.6
Q ss_pred HHHHHCCCCHHHHCCC
Q ss_conf 6886709995673156
Q gi|254780450|r 55 AYNALTNAVWNKRTKS 70 (803)
Q Consensus 55 a~~~l~G~~~~~~~~~ 70 (803)
||..|...++++....
T Consensus 54 AYnkMa~Ls~E~~A~G 69 (508)
T TIGR01124 54 AYNKMAQLSAEQRARG 69 (508)
T ss_pred HHHHHHCCCHHHHCCC
T ss_conf 9986514887584182
No 197
>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=96.00 E-value=0.016 Score=35.78 Aligned_cols=101 Identities=22% Similarity=0.365 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHCCCCC-CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCC
Q ss_conf 1699999999874227-65206788-579999985042101224556678897899999978866884454202322221
Q gi|254780450|r 530 LSQFEQVLVNLCVNAH-HAIMLKES-GSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFT 607 (803)
Q Consensus 530 ~~~l~qvl~NLl~NA~-~A~~~~~~-G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~t 607 (803)
--=++-.+..=|+||+ ||.|-.+. |.|.|+..-. .|.+.+-|+|.|--++=+....=..|+-.
T Consensus 41 IED~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iy---------------EDklev~vsD~G~SFD~d~~k~~lGPyd~ 105 (161)
T TIGR01924 41 IEDLKIAVSEACTNAVKHAYKEEENVGEISIEFEIY---------------EDKLEVIVSDEGDSFDLDTKKQELGPYDK 105 (161)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEE---------------EEEEEEEEECCCCCCCHHHHHHHCCCCCC
T ss_conf 520677665553033112230898367899888788---------------75789998207864111002532589795
Q ss_pred CCCC---CCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 0135---776530388999998516754999961889429999943
Q gi|254780450|r 608 TKKV---GEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 608 tk~~---g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
.+.. ..| ||||++.-.| |. .+.+....|.--.-|=+|-
T Consensus 106 ~~~i~~L~eG-GLGLFLietL---MD-~V~~~~~sGV~v~MTKYl~ 146 (161)
T TIGR01924 106 SEDIDQLREG-GLGLFLIETL---MD-EVKVYEDSGVTVAMTKYLN 146 (161)
T ss_pred CCCHHHHHCC-CCHHHHHHCC---CC-EEEEEECCCEEEEEEEECC
T ss_conf 7875432017-7136645103---76-1699832860898864226
No 198
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.85 E-value=0.031 Score=33.70 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=46.3
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHH
Q ss_conf 99999985259619999299968976467986429996780456321888088204899999
Q gi|254780450|r 160 QNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQA 221 (803)
Q Consensus 160 ~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~ 221 (803)
..+..++++.|..++.+|..|.+...|+++++++|.+.+++.+. +...++...+...|..
T Consensus 80 l~L~aLL~al~~pVlsvd~kg~v~~aNpAa~~l~~~~~~~~~g~--~~~~l~~~~nf~~~l~ 139 (511)
T COG3283 80 LALSALLEALPEPVLSVDMKGKVDMANPAACQLFGRKEDRLRGH--TAAQLINGFNFLRWLE 139 (511)
T ss_pred HHHHHHHHHCCCCEEEECCCCCEEECCHHHHHHHCCCHHHHCCC--CHHHHCCCCCHHHHHH
T ss_conf 79999997188756875277743325889999848883540575--6998638677899984
No 199
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.0036 Score=40.24 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=7.8
Q ss_pred HHCCCCEEEEEEE
Q ss_conf 8346750999850
Q gi|254780450|r 294 FNNIPMAIASIDK 306 (803)
Q Consensus 294 ~e~~p~~I~~~d~ 306 (803)
-+.++.+|.+...
T Consensus 199 Sd~i~~PI~~~~~ 211 (623)
T COG0326 199 SDHIAYPIYIEGE 211 (623)
T ss_pred HCCCCCCEEEEEE
T ss_conf 3254316699642
No 200
>KOG1229 consensus
Probab=95.72 E-value=0.014 Score=36.02 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=67.1
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCH--HHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99999998525961999929996897646798642999678045632188808820--4899999986200267148889
Q gi|254780450|r 159 LQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGE--GLALIQAIRTEPSHQKITTLDL 236 (803)
Q Consensus 159 ~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~ 236 (803)
...+...++....+|-++|.+..+.|+|++|+.|.||-..|++++... ++...+ ...++..+-.-...|.....++
T Consensus 156 cnalFaaLD~c~eAiEI~~ddhViQYVNpAfE~mmG~hkgEliGke~a--dlpkkdknradlldtintcikkgke~qG~~ 233 (775)
T KOG1229 156 CNALFAALDECDEAIEICDDDHVIQYVNPAFENMMGCHKGELIGKEEA--DLPKKDKNRADLLDTINTCIKKGKEAQGEE 233 (775)
T ss_pred HHHHHHHHHHHHHHHEECCCHHHHHHHCHHHHHHHCCHHHHHCCCCHH--HCCCCCCCHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 189999886230032004634689873578886331010212377222--256210003666556667653182001368
Q ss_pred EEEEEECCEEEEEEEEEEEEECCCCCEEEEEEE
Q ss_conf 999804897999999556765388855479999
Q gi|254780450|r 237 DLRRIDNGHGIPVKIVHHILASCDGKPGESRTV 269 (803)
Q Consensus 237 ~~~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~ 269 (803)
. +|++.|....+.+...++....|+...+++.
T Consensus 234 ~-aRRksgdS~dqh~~itP~~gqggkirhfvsl 265 (775)
T KOG1229 234 E-ARRKSGDSCDQHFIITPFAGQGGKIRHFVSL 265 (775)
T ss_pred H-HHHCCCCCCCCEEEEEEECCCCCCEEEEHHH
T ss_conf 8-8642477524317872004778731110101
No 201
>KOG1979 consensus
Probab=95.54 E-value=0.025 Score=34.35 Aligned_cols=14 Identities=29% Similarity=0.237 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 16999999998742
Q gi|254780450|r 530 LSQFEQVLVNLCVN 543 (803)
Q Consensus 530 ~~~l~qvl~NLl~N 543 (803)
...+-|++++=..|
T Consensus 502 ~ElfYQi~i~dF~N 515 (694)
T KOG1979 502 KELFYQILITDFGN 515 (694)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999987605
No 202
>PTZ00130 heat shock protein 90; Provisional
Probab=95.47 E-value=0.033 Score=33.45 Aligned_cols=13 Identities=15% Similarity=0.008 Sum_probs=6.4
Q ss_pred HHHHHHHCCCCEE
Q ss_conf 9999985167549
Q gi|254780450|r 621 VVYGIIRQSGGYI 633 (803)
Q Consensus 621 i~~~iv~~~gG~i 633 (803)
+|+.+=+.+|..|
T Consensus 640 L~~~~K~~LgdkV 652 (824)
T PTZ00130 640 LIDVISDTLKNQI 652 (824)
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999861820
No 203
>KOG0501 consensus
Probab=95.43 E-value=0.049 Score=32.31 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=70.9
Q ss_pred CCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCH--HHHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEEEEEEEEEE
Q ss_conf 996897646798642999678045632188808820--489999998620026714888999980489799999955676
Q gi|254780450|r 179 QGKILYINATLAEWIGIDLTTFTSKSISIGDITAGE--GLALIQAIRTEPSHQKITTLDLDLRRIDNGHGIPVKIVHHIL 256 (803)
Q Consensus 179 ~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~v~~~~~~~ 256 (803)
|.-++|+|+.||.+.||.+.|+..+.-++. +.+++ +...++...+.....+...+|+-+ .+++...+|..+...++
T Consensus 39 D~PiVY~NdgFcKlsGY~RAevMQKs~tc~-FMyGEltdk~ti~k~~~t~eN~~~~qfEill-yKKN~TPvW~~vqiAPI 116 (971)
T KOG0501 39 DWPIVYCNDGFCKLSGYHRAEVMQKSCTCS-FMYGELTDKGTIEKVRQTLENYETNQFEILL-YKKNRTPVWLLVQIAPI 116 (971)
T ss_pred CCCEEEECCCCHHCCCCCHHHHHCCCCEEE-EEECCCCCHHHHHHHHHHHHHHHHCCEEEEE-EECCCCCEEEEEEEECC
T ss_conf 140588347621124745998862564233-3201334511699999999754312123676-61589855999984023
Q ss_pred ECCCCCEEEEEEEEEEHHHHHH
Q ss_conf 5388855479999986078999
Q gi|254780450|r 257 ASCDGKPGESRTVVVSRKNCDS 278 (803)
Q Consensus 257 ~~~~G~~~~~~~~~~Dit~~k~ 278 (803)
+.......-+...+.|||.-|+
T Consensus 117 rNe~d~VVLfLctFkDIT~~KQ 138 (971)
T KOG0501 117 RNEKDKVVLFLCTFKDITALKQ 138 (971)
T ss_pred CCCCCEEEEEEEECCCCHHHCC
T ss_conf 5777518999951146443238
No 204
>pfam08670 MEKHLA MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=95.40 E-value=0.2 Score=27.96 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=59.3
Q ss_pred HHHHCCCEEEEEC--CCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEE
Q ss_conf 9852596199992--99968976467986429996780456321888088204899999986200267148889999804
Q gi|254780450|r 165 YLDHSPVGFMSAD--HQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRID 242 (803)
Q Consensus 165 ~le~a~~gi~~~D--~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 242 (803)
.+-++|.+|+.++ ++-.++|.|.++.++|+++..++.+ ++......+..+........+....+.....--++...
T Consensus 36 ~L~~ap~ail~h~~~~dP~f~yaN~aaL~l~e~~w~el~~--lpsr~tae~~~r~~r~~~l~~v~~qG~~~~y~GiRiss 113 (148)
T pfam08670 36 ALWHHPDAVLCHSLKADPVFNYANQAALDLLETTWVELQD--LPSRKTAEESGRKERCSELAKVMQQGFACLYSGVRISS 113 (148)
T ss_pred HHHCCCCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHC--CCHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 9963997899767998974654149999996688999845--96665168352899999899999818633788168827
Q ss_pred CCEEEEEE--EEEEEEECCCCCEEEEEEE
Q ss_conf 89799999--9556765388855479999
Q gi|254780450|r 243 NGHGIPVK--IVHHILASCDGKPGESRTV 269 (803)
Q Consensus 243 ~g~~~~v~--~~~~~~~~~~G~~~~~~~~ 269 (803)
.|+.+.+. +.+.+ .+.+|...+...+
T Consensus 114 ~Grrf~ie~a~vW~v-~d~~g~~~gqAa~ 141 (148)
T pfam08670 114 MGRRFSIEQAVAWKL-LDEDGAYHGQAAM 141 (148)
T ss_pred CCCEEEECCEEEEEE-ECCCCCEEEEEEE
T ss_conf 998899912799888-8588988999999
No 205
>KOG3559 consensus
Probab=95.37 E-value=0.21 Score=27.89 Aligned_cols=226 Identities=14% Similarity=0.111 Sum_probs=109.4
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 99999985249809999599938981066886709995673156110002787616789999999832432320389860
Q gi|254780450|r 27 PLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQ 106 (803)
Q Consensus 27 ~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~ 106 (803)
++-.-+++...--|++++++|.|.|.....---+|.+..|..|.......++.|..+....+.. .. .-.++.+.+
T Consensus 79 elgshlLqtLDGF~fvva~dGkimYISETaSvhLGLSQVElTGNsi~eYIH~~D~demna~L~~-h~----H~qeyeIEr 153 (598)
T KOG3559 79 ELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSIYEYIHPQDHDEMNAVLTA-HQ----HLQEYEIER 153 (598)
T ss_pred HHHHHHHHHHCCEEEEEECCCCEEEEECCEEEEECCEEEEEECCHHHHHHCCCCHHHHHHHHHH-HH----HHHHHHHHH
T ss_conf 8777688750545999927998899850113452300046506237664060125789888764-32----444300334
Q ss_pred CCEE-----E------CCCCCEEEEE----EEEEEEEECCCC-----CEEEEEEE---E--EECHHHHHHHHHHHHHHHH
Q ss_conf 1000-----0------4898679999----999999823788-----06999999---9--7833889999999999999
Q gi|254780450|r 107 SLNN-----Y------SQNSEPHWYR----LKARVLPISLHK-----EKLLYAWR---I--TDITSERKDQEKFFRELQN 161 (803)
Q Consensus 107 ~~~~-----~------~~~g~~~w~~----i~~~~~~~~~~~-----~~~~~~~~---i--~DIT~~k~~ee~l~~~~~~ 161 (803)
.++. . .+.+....++ ..++..++.... .+...+.. + .-||+-|.
T Consensus 154 sfflrmkCvlakrnaglt~sg~kvihcSgylKir~y~~~m~p~dscyqn~glvAvG~slP~saiteikl----------- 222 (598)
T KOG3559 154 SFFLRMKCVLAKRNAGLTCSGYKVIHCSGYLKIRQYELDMSPNDSCYQNVGLVAVGHSLPPSAITEIKL----------- 222 (598)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCEEEEE-----------
T ss_conf 311234331000024653368634860576068996532587745100010699557789541147885-----------
Q ss_pred HHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHH-CCCCEEEEEEEEEE
Q ss_conf 99998525961999929996897646798642999678045632188808820489999998620-02671488899998
Q gi|254780450|r 162 AIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEP-SHQKITTLDLDLRR 240 (803)
Q Consensus 162 ~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~ 240 (803)
+...-+|....|-+++|......+++||++.++.. +++...+|.-|...+...-... ..|....--+++..
T Consensus 223 ------~sNmFmfraslDlkliF~D~rv~qltgYepqdlie--ktLY~~ih~~D~~~lr~~H~~ll~kGqvtTkYYR~l~ 294 (598)
T KOG3559 223 ------HSNMFMFRASLDLKLIFLDSRVHQLTGYEPQDLIE--KTLYHHIHGCDSFHLRCAHHLLLVKGQVTTKYYRFLL 294 (598)
T ss_pred ------CCCEEEEEEECCEEEEEHHHHHHHHHCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf ------46507998621157885044678860899422566--7788875111288998888999861431407889877
Q ss_pred EECCEEEEEEEEEEEEECC-CCCEEEEEEE--EEEHHHHH
Q ss_conf 0489799999955676538-8855479999--98607899
Q gi|254780450|r 241 IDNGHGIPVKIVHHILASC-DGKPGESRTV--VVSRKNCD 277 (803)
Q Consensus 241 ~~~g~~~~v~~~~~~~~~~-~G~~~~~~~~--~~Dit~~k 277 (803)
+.|.+.|+.-...++-.. ..++..++++ +..+.+-|
T Consensus 295 -k~ggwvwvqsyat~vHnSrSSR~~fivSvnyVls~~EyK 333 (598)
T KOG3559 295 -KQGGWVWVQSYATFVHNSRSSRPHFIVSVNYVLSELEYK 333 (598)
T ss_pred -CCCCEEEEEEEEEEEECCCCCCCEEEEEEEEEEEHHHHH
T ss_conf -078539999744688425457740577665652001033
No 206
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.23 E-value=0.23 Score=27.60 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=35.6
Q ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHC
Q ss_conf 99999985249809999599938981066886709995673156110002
Q gi|254780450|r 27 PLETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLS 76 (803)
Q Consensus 27 ~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~ 76 (803)
--+.+++++.|++++-+|..|.+..+|+|+++++|.+.+...+..-.-+.
T Consensus 80 l~L~aLL~al~~pVlsvd~kg~v~~aNpAa~~l~~~~~~~~~g~~~~~l~ 129 (511)
T COG3283 80 LALSALLEALPEPVLSVDMKGKVDMANPAACQLFGRKEDRLRGHTAAQLI 129 (511)
T ss_pred HHHHHHHHHCCCCEEEECCCCCEEECCHHHHHHHCCCHHHHCCCCHHHHC
T ss_conf 79999997188756875277743325889999848883540575699863
No 207
>KOG1229 consensus
Probab=94.87 E-value=0.014 Score=36.10 Aligned_cols=103 Identities=10% Similarity=0.109 Sum_probs=70.4
Q ss_pred HHHHHCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCC-CCCCCHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 99983467509998502069983155444445488466179866661011-11220246666555411233454048873
Q gi|254780450|r 291 NRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHK-NEKRKIIAALYDANDQKSDISPIDSPHPQ 369 (803)
Q Consensus 291 ~~i~e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 369 (803)
-..++....+|-+.|.+..+.|+|++|..|+ |+-..+++|+...++--. ..+..+.+.+..+...+.+ ...+...++
T Consensus 160 FaaLD~c~eAiEI~~ddhViQYVNpAfE~mm-G~hkgEliGke~adlpkkdknradlldtintcikkgke-~qG~~~aRR 237 (775)
T KOG1229 160 FAALDECDEAIEICDDDHVIQYVNPAFENMM-GCHKGELIGKEEADLPKKDKNRADLLDTINTCIKKGKE-AQGEEEARR 237 (775)
T ss_pred HHHHHHHHHHHEECCCHHHHHHHCHHHHHHH-CCHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHH
T ss_conf 9988623003200463468987357888633-10102123772222562100036665566676531820-013688864
Q ss_pred CCCEEEEEEEEEEECCCCCCCCEEEE
Q ss_conf 88506899998730456677613899
Q gi|254780450|r 370 DENRYFRFYISATLDRSTEAPEEQAI 395 (803)
Q Consensus 370 ~~~r~~~~~~~~~~~~~~~~~~~~~i 395 (803)
+.|....+.+..+|.-+.+|.....+
T Consensus 238 ksgdS~dqh~~itP~~gqggkirhfv 263 (775)
T KOG1229 238 KSGDSCDQHFIITPFAGQGGKIRHFV 263 (775)
T ss_pred CCCCCCCCEEEEEEECCCCCCEEEEH
T ss_conf 24775243178720047787311101
No 208
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=94.83 E-value=0.29 Score=26.86 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=9.5
Q ss_pred EECCCHHHHHHHHHHHHHCC
Q ss_conf 97698899999999999889
Q gi|254780450|r 686 LVEDEDSVRRGSKRMLETRG 705 (803)
Q Consensus 686 vvdD~~~~~~~~~~~L~~~g 705 (803)
.-|--+-+...+..+.+-+|
T Consensus 161 fyEsphRl~~tL~d~~~~~g 180 (275)
T COG0313 161 FYESPHRLLATLEDIVEVLG 180 (275)
T ss_pred EEECCHHHHHHHHHHHHHCC
T ss_conf 99663658999999999718
No 209
>KOG1978 consensus
Probab=94.77 E-value=0.036 Score=33.19 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=11.0
Q ss_pred EECCCCHHHHHHHHHHHH
Q ss_conf 507979999999999985
Q gi|254780450|r 782 LSKPFSLKQLATSVHELL 799 (803)
Q Consensus 782 l~KP~~~~~L~~~i~~~L 799 (803)
+.+|.+.++..+.|+.+.
T Consensus 631 ig~~L~~~dm~~iv~~L~ 648 (672)
T KOG1978 631 IGDPLSKDDMTRIVRSLA 648 (672)
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 054348888999999999
No 210
>KOG3561 consensus
Probab=94.75 E-value=0.055 Score=31.94 Aligned_cols=83 Identities=8% Similarity=0.023 Sum_probs=59.9
Q ss_pred EEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEE
Q ss_conf 99850206998315544444548846617986666101111220246666555411233454048873885068999987
Q gi|254780450|r 302 ASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISA 381 (803)
Q Consensus 302 ~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~ 381 (803)
.....+|.++++.+....+. ++...++.|...+.+.|+++...+...+.............-++.+...+.+.+....+
T Consensus 376 sr~~~~g~~~~~dqr~~~i~-~~~~~~~~g~ss~~s~h~~d~~~~~~s~~~~~~~s~~~~~~~yr~~~~n~~~~~~~~~~ 454 (803)
T KOG3561 376 SRSSSDGSFTFVDQRASAIL-GYQPQELLGRSSYESSHPADSSPLSESLKQVQALSEQRSTLLYRFRSKNGSSIPNKSSA 454 (803)
T ss_pred CCCCCCCCEECCCCCCCCCC-CCCCHHHCCCCCCCCCCCCCCCHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 04676786201455644223-66854332766300257555430124699998704665432224546788754344553
Q ss_pred EECC
Q ss_conf 3045
Q gi|254780450|r 382 TLDR 385 (803)
Q Consensus 382 ~~~~ 385 (803)
....
T Consensus 455 ~~~~ 458 (803)
T KOG3561 455 YLFS 458 (803)
T ss_pred CCCC
T ss_conf 2356
No 211
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=94.56 E-value=0.12 Score=29.64 Aligned_cols=32 Identities=22% Similarity=0.094 Sum_probs=14.6
Q ss_pred CEEEEEEEEEEEEECCCCCEEEEEEEEEEHHH
Q ss_conf 97999999556765388855479999986078
Q gi|254780450|r 244 GHGIPVKIVHHILASCDGKPGESRTVVVSRKN 275 (803)
Q Consensus 244 g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~ 275 (803)
|+.+|+.....++.+.+|++..++++..|||+
T Consensus 11 G~~~w~~~~~~~~~~~~g~~~~~i~~~~DIte 42 (43)
T smart00086 11 GSYIWVLVSASPIRDEDGEVEGILGVVRDITE 42 (43)
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf 99999999999999989899999999971779
No 212
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.2 Score=28.05 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=15.5
Q ss_pred HHCCCCCC--CCCCCCCCCC-CHHHHHHHHHHCC
Q ss_conf 20232222--1013577653-0388999998516
Q gi|254780450|r 599 EKIFEPFF--TTKKVGEGTG-LGLSVVYGIIRQS 629 (803)
Q Consensus 599 ~~iFepF~--ttk~~g~GtG-LGL~i~~~iv~~~ 629 (803)
+|||.+.- +.|+.--+.+ --++||..|.+..
T Consensus 319 ~rif~rt~sviGr~v~~chpPksv~iv~ki~~~f 352 (409)
T COG2461 319 ERIFPRTPSVIGRRVQLCHPPKSVHIVEKILKDF 352 (409)
T ss_pred CEECCCCHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 3201337676187155789984278999999986
No 213
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=94.06 E-value=0.3 Score=26.75 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=72.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-----CCHHHHHHHHHHHCC
Q ss_conf 875699976988999999999998898999989989998999865999548998587889-----888999999998689
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-----MDGPTLLRELRKTYP 754 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-----m~G~~~~~~ir~~~~ 754 (803)
.+++.++||-|.........+|..-|.+|.--.+ +..+ ....||.+|+.+--|- |--.-+++++.-.
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~l--p~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mt-- 81 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSAL--PPAHYDMMLLGVAVTFRENLTMQHERLAKALSMT-- 81 (140)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCC----CCCC--CHHHHCEEEECCCCCCCCCCHHHHHHHHHHHHHH--
T ss_conf 5664577668608999999998468826884233----1002--7445203465366655688038899999998653--
Q ss_pred CCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf 9829999067858998767605798075079799999999
Q gi|254780450|r 755 SLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATS 794 (803)
Q Consensus 755 ~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~ 794 (803)
+--|+++-.++ ...++.+.+.+...+|.||++...|...
T Consensus 82 d~vilalPs~~-qv~AeqLkQ~g~~~CllKPls~~rLlpt 120 (140)
T COG4999 82 DFVILALPSHA-QVNAEQLKQDGAGACLLKPLSSTRLLPT 120 (140)
T ss_pred CCEEEECCCHH-HHHHHHHHHCCHHHHHHCCCHHHHHHHH
T ss_conf 13677367288-8759999631428674076506566789
No 214
>PRK09224 threonine dehydratase; Reviewed
Probab=94.06 E-value=0.42 Score=25.69 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=21.0
Q ss_pred EEEE-ECCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 6999-769889999999999988989999899
Q gi|254780450|r 683 IVLL-VEDEDSVRRGSKRMLETRGYTVHEAFS 713 (803)
Q Consensus 683 ~iLv-vdD~~~~~~~~~~~L~~~g~~v~~a~~ 713 (803)
+||+ ++..+.-+.-+...|..+||....-++
T Consensus 464 rVL~G~qv~~~~~~~~~~~L~~lgY~~~~et~ 495 (504)
T PRK09224 464 RVLAGFQVPDADEAEFEEFLAELGYPYWDETD 495 (504)
T ss_pred EEEEEEECCHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 07999974888899999999977998676579
No 215
>KOG1977 consensus
Probab=93.96 E-value=0.13 Score=29.36 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=12.6
Q ss_pred CEEEEEEEE-CCC--CCCHHHHHHCCCCC
Q ss_conf 789999997-886--68844542023222
Q gi|254780450|r 580 DMVLVEVED-TGI--GMSPDIMEKIFEPF 605 (803)
Q Consensus 580 ~~v~i~V~D-~G~--GI~~~~~~~iFepF 605 (803)
.++.+.+.| ||+ ||-|...+..-.|-
T Consensus 764 ~fi~~~c~d~T~~qN~~cp~~~e~~~~aC 792 (1142)
T KOG1977 764 GFIMNPCEDATGDQNGICPQSEESKARAC 792 (1142)
T ss_pred CEEEEEHHHCCCCCCCCCCCHHHHHCCCC
T ss_conf 54775513114776788840667640546
No 216
>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=93.93 E-value=0.17 Score=28.57 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=20.5
Q ss_pred CEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCC
Q ss_conf 04887388506899998730456677613899999850232
Q gi|254780450|r 364 DSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQ 404 (803)
Q Consensus 364 e~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~~~DITer 404 (803)
|++...++|.++++..+..+.++..+.....+++..|||++
T Consensus 3 e~r~~~~dG~~~w~~~~~~~~~~~~g~~~~~i~~~~DIte~ 43 (43)
T smart00086 3 EYRLRRKDGSYIWVLVSASPIRDEDGEVEGILGVVRDITER 43 (43)
T ss_pred EEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 99999889999999999999999898999999999717798
No 217
>pfam10090 DUF2328 Uncharacterized protein conserved in bacteria (DUF2328). Members of this family of hypothetical bacterial proteins have no known function.
Probab=93.76 E-value=0.48 Score=25.32 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCEEEEEHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999998507998478888999999988887643004542120---058435853467899999999875035681
Q gi|254780450|r 436 TAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRK---QTMRLTVLNLTEVIGNLRMMIQKLISEPPQ 512 (803)
Q Consensus 436 ~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~---~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 512 (803)
.+|....|+|.......+ .+.+..|.+|+..+..- |.|-|+ .++.-+.++..++- .+++.+.. +.+
T Consensus 2 GAI~NGLELL~~~~~~~~--~~~m~LI~~Sa~~A~aR----l~F~RlAfGaag~~~~i~~~e~~----~~~~~~~~-~~r 70 (181)
T pfam10090 2 GAIVNGLELLDDEGDPEM--GPEMALIRESARNASAR----LRFFRLAFGAAGAGQQIDLAEAK----SVLEGYLA-GGR 70 (181)
T ss_pred CCHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCHHHHH----HHHHHHHH-CCC
T ss_conf 312555888707898641--68999999999999999----99999980846888856999999----99999983-885
Q ss_pred EEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 69998148972269987169999999987422765206788579999985042101224556678897899999978866
Q gi|254780450|r 513 VKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIG 592 (803)
Q Consensus 513 i~~~~~~~~~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~G 592 (803)
+++++..+.+. + +...-+.++||+-=+.+| .|.||+|+|... +. .+..++++-+=.-.-
T Consensus 71 ~~l~W~~~~~~--~---~k~~vklllnl~l~~~~A--lprGG~i~V~~~--~~------------~~~~~~v~a~g~r~~ 129 (181)
T pfam10090 71 ITLDWQLERDL--L---PKPEVKLLLNLLLIAEDA--LPRGGEIDVGEG--SD------------GAGGWRVTAEGERLR 129 (181)
T ss_pred EEEEECCCCCC--C---CHHHHHHHHHHHHHHHHH--CCCCCEEEEEEE--CC------------CCCEEEEEEEECCCC
T ss_conf 38983587454--8---879999999999999975--477877899984--17------------897599999704678
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEE
Q ss_conf 8844542023222210135776530388999998516754999961889429999
Q gi|254780450|r 593 MSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRI 647 (803)
Q Consensus 593 I~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i 647 (803)
++++..+-+=..-. .... ...-.=-+....+++..|++|.++.+ ++.++|
T Consensus 130 ~~~~~~~~L~g~~~-~~~l-~~~~VQ~~~l~~la~~~G~~l~~~~~---~~~i~l 179 (181)
T pfam10090 130 IDPDLWAALAGGAP-EEEL-DARNVQFYLLPLLAREAGGTLSYEIT---EDGIVL 179 (181)
T ss_pred CCHHHHHHHCCCCC-CCCC-CHHHHHHHHHHHHHHHCCCCEEEEEC---CCEEEE
T ss_conf 99789998569998-7789-98764999999999986991178864---977998
No 218
>KOG3753 consensus
Probab=93.69 E-value=0.12 Score=29.48 Aligned_cols=79 Identities=9% Similarity=0.060 Sum_probs=51.3
Q ss_pred EEEE--CCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCC-CCEE---EEEEEEEEEECCEE
Q ss_conf 9999--2999689764679864299967804563218880882048999999862002-6714---88899998048979
Q gi|254780450|r 173 FMSA--DHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSH-QKIT---TLDLDLRRIDNGHG 246 (803)
Q Consensus 173 i~~~--D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~e~~~~~~~~g~~ 246 (803)
+|.. .+.+-+..+..++..++||-+.++++. +..+++|++|+.++..+...... ++.. ...+++.. .||..
T Consensus 332 iFtT~HTptClf~hVDeaAVp~LGyLPqDLIG~--sil~f~H~eDr~vm~q~H~~v~q~~G~p~F~~sp~Rf~a-qNG~y 408 (1114)
T KOG3753 332 IFTTTHTPTCLFQHVDEAAVPLLGYLPQDLIGT--SILAFVHPEDRHVMVQIHQKVLQSGGKPVFSHSPIRFCA-QNGSY 408 (1114)
T ss_pred EEEECCCCCCEEEECCHHHHHHHCCCCHHHHCC--CHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEE-CCCCE
T ss_conf 467403786003413254422320472655264--165531677428999999999985798764546500010-38867
Q ss_pred EEEEEEEE
Q ss_conf 99999556
Q gi|254780450|r 247 IPVKIVHH 254 (803)
Q Consensus 247 ~~v~~~~~ 254 (803)
+.....|.
T Consensus 409 v~ldTeWS 416 (1114)
T KOG3753 409 VRLDTEWS 416 (1114)
T ss_pred EEEECHHH
T ss_conf 99733044
No 219
>PRK12483 threonine dehydratase; Reviewed
Probab=92.79 E-value=0.66 Score=24.31 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=20.3
Q ss_pred EEEE-ECCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 6999-76988999999999998898999989
Q gi|254780450|r 683 IVLL-VEDEDSVRRGSKRMLETRGYTVHEAF 712 (803)
Q Consensus 683 ~iLv-vdD~~~~~~~~~~~L~~~g~~v~~a~ 712 (803)
+||+ ++..+.-+.-+...|..+||....-+
T Consensus 481 rVLvG~qv~~~~~~~~~~~L~~lGY~y~~et 511 (521)
T PRK12483 481 RVLAGLQVPEAERAALDAALAAIGYPYWEET 511 (521)
T ss_pred EEEEEEECCHHHHHHHHHHHHHCCCCCEECC
T ss_conf 0799997488889999999997699877767
No 220
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=92.38 E-value=0.03 Score=33.80 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=9.3
Q ss_pred EEEECCCCCEEEEHHH
Q ss_conf 9999299968976467
Q gi|254780450|r 173 FMSADHQGKILYINAT 188 (803)
Q Consensus 173 i~~~D~~g~i~~~N~~ 188 (803)
-+.++.||.+...|..
T Consensus 62 ~V~i~~dgsIsV~dnG 77 (633)
T PRK05559 62 EVTLHADGSVSVRDNG 77 (633)
T ss_pred EEEECCCCEEEEEECC
T ss_conf 9999789849999899
No 221
>PRK08526 threonine dehydratase; Provisional
Probab=92.32 E-value=0.76 Score=23.91 Aligned_cols=13 Identities=15% Similarity=0.583 Sum_probs=5.4
Q ss_pred HHHHHHHCCCEEE
Q ss_conf 9999998898999
Q gi|254780450|r 697 SKRMLETRGYTVH 709 (803)
Q Consensus 697 ~~~~L~~~g~~v~ 709 (803)
+.+.|+..||.+.
T Consensus 388 l~~~l~~~G~~~~ 400 (403)
T PRK08526 388 IRKILTEKGFNFY 400 (403)
T ss_pred HHHHHHHCCCCEE
T ss_conf 9999998799878
No 222
>KOG3561 consensus
Probab=92.25 E-value=0.36 Score=26.18 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=36.4
Q ss_pred HHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHH
Q ss_conf 9852596199992999689764679864299967804563218880882048999
Q gi|254780450|r 165 YLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALI 219 (803)
Q Consensus 165 ~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~ 219 (803)
+++.+.--+|++..+|+|+|+++....+|||..+++.+ .++.+++||++....
T Consensus 100 mLeAlDGF~fvV~cdG~IvyVSeSVT~~L~y~QsDL~~--qSly~ilhp~d~~~~ 152 (803)
T KOG3561 100 ILEALDGFLFVVNCDGRIVYVSESVTSVLGYLQSDLMG--QSLYDILHPLDNDKP 152 (803)
T ss_pred HHHHHCCEEEEEECCCEEEEEECCHHHHHCCCHHHHHC--CHHHHHCCCCCCCCC
T ss_conf 99974674899965745999955447765868788733--419876084324763
No 223
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=91.71 E-value=0.59 Score=24.69 Aligned_cols=59 Identities=29% Similarity=0.329 Sum_probs=39.9
Q ss_pred EEEEECCCCCCHHHHHHCCCCCCCCCCC---C---CCCCCHHHHHHHHHHCCCCEEEEEEC--CCCCEEEEEEEC
Q ss_conf 9999788668844542023222210135---7---76530388999998516754999961--889429999943
Q gi|254780450|r 584 VEVEDTGIGMSPDIMEKIFEPFFTTKKV---G---EGTGLGLSVVYGIIRQSGGYILPESE--VGKGTIFRIFLP 650 (803)
Q Consensus 584 i~V~D~G~GI~~~~~~~iFepF~ttk~~---g---~GtGLGL~i~~~iv~~~gG~i~v~S~--~g~Gt~F~i~lP 650 (803)
+.|==-|||=|.|+- -=-|-+.- + =|-=||| ++|||..||.+.+=.. -||-|...|.=|
T Consensus 570 LVVLSPGPGrP~dFd-----v~~Ti~aa~ar~lP~FGVCLGL---Qg~vEafGG~L~vL~~P~HGK~srirVl~p 636 (726)
T TIGR01815 570 LVVLSPGPGRPKDFD-----VKETIKAALARDLPVFGVCLGL---QGLVEAFGGELDVLAIPVHGKASRIRVLEP 636 (726)
T ss_pred EEEECCCCCCCCCCC-----HHHHHHHHHHCCCCEEEEHHHH---HHHHHHHCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 898687312387544-----7889999997289857741346---899987467213578887886336888368
No 224
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=90.85 E-value=1.1 Score=22.86 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=16.8
Q ss_pred CCEEEEECCCCCCCH---------HHHHHHHHHHCCCCCEEEEE
Q ss_conf 548998587889888---------99999999868998299990
Q gi|254780450|r 728 VDIVISDVVMPEMDG---------PTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 728 ~dlil~D~~mp~m~G---------~~~~~~ir~~~~~~~ii~~t 762 (803)
.|++++|+.-- |.+ ..+.+.||+.+|++||++++
T Consensus 58 a~~~vi~~g~N-~~~~~~~~~~~~~~~V~~ir~~~p~tPIvlv~ 100 (177)
T cd01844 58 ADLYIIDCGPN-IVGAEAMVRERLGPLVKGLRETHPDTPILLVS 100 (177)
T ss_pred CCEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 98899963467-88747899999999999999878899789983
No 225
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit; InterPro: IPR005740 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B (parE) of topoisomerase IV from Gram positive bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=90.51 E-value=0.5 Score=25.16 Aligned_cols=31 Identities=3% Similarity=0.094 Sum_probs=13.2
Q ss_pred CCCCEEEECCCC--EEEEEEEEEEECCCCCCCC
Q ss_conf 454048873885--0689999873045667761
Q gi|254780450|r 361 SPIDSPHPQDEN--RYFRFYISATLDRSTEAPE 391 (803)
Q Consensus 361 ~~~e~~~~~~~~--r~~~~~~~~~~~~~~~~~~ 391 (803)
..+|+.+...++ ..+.-+++.+...+++...
T Consensus 256 i~Ve~afQfnd~~~e~ilSF~N~vkT~eGG~HE 288 (655)
T TIGR01058 256 IEVEVAFQFNDGDSENILSFANSVKTKEGGTHE 288 (655)
T ss_pred EEEEEEEEECCCCCCEEEEEEEEEEECCCCCCH
T ss_conf 589999974278875379864003406887207
No 226
>KOG0019 consensus
Probab=90.40 E-value=0.11 Score=29.87 Aligned_cols=15 Identities=7% Similarity=-0.044 Sum_probs=10.0
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 899999851675499
Q gi|254780450|r 620 SVVYGIIRQSGGYIL 634 (803)
Q Consensus 620 ~i~~~iv~~~gG~i~ 634 (803)
-+|+.+=+.+|..+.
T Consensus 520 ~lck~mK~iL~~kVe 534 (656)
T KOG0019 520 ELCKWMKEILGSKVE 534 (656)
T ss_pred HHHHHHHHHHCCCEE
T ss_conf 999999998608337
No 227
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.58 E-value=0.78 Score=23.82 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCC------CCC--
Q ss_conf 999999874227652067885799999850421012245566788978999999788668844542023------222--
Q gi|254780450|r 534 EQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIF------EPF-- 605 (803)
Q Consensus 534 ~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF------epF-- 605 (803)
.-+...|+.| |+||..+|.|.|.....+ ...++.|+..-.+=....-+++. +|-
T Consensus 65 gYl~NELiEN---AVKfra~geIvieasl~s---------------~~f~~kvsN~vd~~t~~~f~~ll~~it~gDP~dL 126 (184)
T COG5381 65 GYLANELIEN---AVKFRATGEIVIEASLYS---------------HKFIFKVSNIVDLPTTIDFENLLKVITEGDPLDL 126 (184)
T ss_pred HHHHHHHHHH---HHCCCCCCCEEEEEEECC---------------CEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHH
T ss_conf 8989999986---660157985899998314---------------0688873035788518889999999860792999
Q ss_pred -------CCCCCCCCCCCCHHHH
Q ss_conf -------2101357765303889
Q gi|254780450|r 606 -------FTTKKVGEGTGLGLSV 621 (803)
Q Consensus 606 -------~ttk~~g~GtGLGL~i 621 (803)
..+...++|+||||-.
T Consensus 127 lieRiEanA~~~d~~gSglGLLT 149 (184)
T COG5381 127 LIERIEANALESDCEGSGLGLLT 149 (184)
T ss_pred HHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 99999860358887656641000
No 228
>PRK08639 threonine dehydratase; Validated
Probab=89.34 E-value=1.4 Score=22.03 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf 89999999999988989999899899989
Q gi|254780450|r 691 DSVRRGSKRMLETRGYTVHEAFSGTDALK 719 (803)
Q Consensus 691 ~~~~~~~~~~L~~~g~~v~~a~~g~eal~ 719 (803)
+....-+...|+..||.+..-++-.+-.+
T Consensus 387 ~~~~~~l~~~l~~~g~~~~~l~~~~~l~~ 415 (418)
T PRK08639 387 AEDYDGLLARMEAFGPSYIDLNENEPLYN 415 (418)
T ss_pred HHHHHHHHHHHHHCCCCEEECCCCHHHHH
T ss_conf 77899999999977997698999979998
No 229
>KOG0020 consensus
Probab=89.04 E-value=0.29 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999999999999998346750999
Q gi|254780450|r 280 DPSGTIANMRFNRFFNNIPMAIAS 303 (803)
Q Consensus 280 e~~l~~se~rl~~i~e~~p~~I~~ 303 (803)
+..+++--.+|..++ |-|..+|.
T Consensus 260 ~dtlkeLvkkYSqFI-NFpI~lWs 282 (785)
T KOG0020 260 EDTLKELVKKYSQFI-NFPISLWS 282 (785)
T ss_pred HHHHHHHHHHHHHHC-CCCEEEEE
T ss_conf 668999999988750-77401010
No 230
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=88.57 E-value=0.31 Score=26.62 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=9.9
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 788988899999999868998299
Q gi|254780450|r 736 VMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 736 ~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
++-+|+--+|-.. .+.|..+.+
T Consensus 882 GLGEMnpeQLWET--TMdP~~R~L 903 (941)
T PTZ00109 882 GLGEMMADQLWNT--TMDPRVRKL 903 (941)
T ss_pred CCCCCCHHHHHHH--CCCCCCCEE
T ss_conf 2466797898662--778114449
No 231
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=88.39 E-value=0.73 Score=24.00 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=19.6
Q ss_pred CHHHHHHHH-HHHHHHHHHHHHHHHCCCEEEEECCCCCEEEE
Q ss_conf 338899999-99999999999985259619999299968976
Q gi|254780450|r 145 ITSERKDQE-KFFRELQNAIDYLDHSPVGFMSADHQGKILYI 185 (803)
Q Consensus 145 IT~~k~~ee-~l~~~~~~~~~~le~a~~gi~~~D~~g~i~~~ 185 (803)
||-|+-... .+.+.++ .+.+......+.+|.-.-+-.|
T Consensus 110 vtPE~~~~~~~ll~~Le---~~Y~~~~~~~iAvDEAHCiSqW 148 (497)
T TIGR00614 110 VTPEKISKSKSLLQTLE---KLYERKGITLIAVDEAHCISQW 148 (497)
T ss_pred ECHHHHHCCHHHHHHHH---HHHHHCCCEEEEEECEEEECCC
T ss_conf 16346534647899999---9886449669998321543588
No 232
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=87.84 E-value=0.1 Score=30.05 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=20.9
Q ss_pred ECCHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 8998999899986599954899858-788988899999999868998299
Q gi|254780450|r 711 AFSGTDALKVMEKLQGRVDIVISDV-VMPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 711 a~~g~eal~~~~~~~~~~dlil~D~-~mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
..+..+.++.+.+.. .-.+-|.=+ ++-+|+--+|-.. .+.|..+.+
T Consensus 637 ~~~~~~~~~~~~~~~-~k~~~IqRyKGLGEMnp~qLweT--TMdP~~R~L 683 (725)
T PRK05644 637 VSSFEEALDWLLAEG-RKGLTIQRYKGLGEMNPEQLWET--TMDPEVRRL 683 (725)
T ss_pred CCCHHHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHH--CCCCCCCEE
T ss_conf 478899999999730-57880222760676697899863--658301359
No 233
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.96 E-value=1.9 Score=21.02 Aligned_cols=10 Identities=20% Similarity=0.315 Sum_probs=4.3
Q ss_pred EEEECEEEEE
Q ss_conf 9850206998
Q gi|254780450|r 303 SIDKKGRILR 312 (803)
Q Consensus 303 ~~d~~g~i~~ 312 (803)
.+..||-|+.
T Consensus 176 ~~~~DGlIVS 185 (304)
T PRK02645 176 QYKGDGLIVS 185 (304)
T ss_pred EEECCEEEEE
T ss_conf 9842779995
No 234
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.88 E-value=2 Score=20.99 Aligned_cols=105 Identities=11% Similarity=0.184 Sum_probs=62.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 9997698899999999999889899998998-999899986599954899858788988899999999868998299990
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSG-TDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g-~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t 762 (803)
++++|.|+.. .+.+++.|+.|....-. .+-++.+. -.+..++++-+.-|. +-..+.+.+|+.+|++||++-+
T Consensus 443 ~vvid~d~~~----v~~~~~~g~~v~~GDa~~~~~L~~ag--i~~A~~vvit~~d~~-~~~~iv~~~r~~~p~~~IiaRa 515 (558)
T PRK10669 443 LVVIETSRTR----VDELRERGIRAVLGNAANEEIMQLAH--LDCARWLLLTIPNGY-EAGEIVASAREKNPDIEIIARA 515 (558)
T ss_pred EEEEECCHHH----HHHHHHCCCEEEEECCCCHHHHHHCC--CCCCCEEEEEECCHH-HHHHHHHHHHHHCCCCEEEEEE
T ss_conf 8999898999----99999689979997899889998579--132499999819889-9999999999878698699997
Q ss_pred CCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf 67858998767605798075079799999999999851
Q gi|254780450|r 763 GYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
-+. ...+.+.+.+...++. |- .+....+-+.|.
T Consensus 516 ~~~--~~~~~L~~aGA~~VV~-~~--~e~a~~m~e~l~ 548 (558)
T PRK10669 516 HYD--DEVAYITERGANQVVM-GE--REIARTMLELLE 548 (558)
T ss_pred CCH--HHHHHHHHCCCCEEEC-CH--HHHHHHHHHHHC
T ss_conf 989--9999999779998989-37--899999999857
No 235
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=86.76 E-value=0.19 Score=28.17 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=6.0
Q ss_pred EEECCCCCEEEEEH
Q ss_conf 99959993898106
Q gi|254780450|r 41 LITNERGHIIYANN 54 (803)
Q Consensus 41 ~v~D~~G~i~~~N~ 54 (803)
+..+.+|.|.-.|.
T Consensus 27 V~i~~dgsisV~Dn 40 (594)
T smart00433 27 VTIDKDNSISVEDN 40 (594)
T ss_pred EEECCCCEEEEEEC
T ss_conf 99927984999989
No 236
>PRK03612 spermidine synthase; Provisional
Probab=86.59 E-value=2 Score=20.89 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=52.2
Q ss_pred CEEEEECCCHHHHHHHHHH--HHHCCC------EEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCH------HHHH
Q ss_conf 5699976988999999999--998898------999-989989998999865999548998587889888------9999
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRM--LETRGY------TVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDG------PTLL 746 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~--L~~~g~------~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G------~~~~ 746 (803)
.+|-+||=|+.+-++.++. |..+.. .|. ...||. .-+++...+||+|+.|.-=|...+ .|.+
T Consensus 318 e~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~---~~l~~~~~~yDvIi~D~pdP~~~~~~~LYs~eFY 394 (516)
T PRK03612 318 EQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAF---NWLRKLPETFDAIIVDLPDPSNPALGKLYSVEFY 394 (516)
T ss_pred CEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHH---HHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 6378995188999999857214444123234996489853789---9998688878889981899799522467539999
Q ss_pred HHHHHH-CCCCCEEEEEC
Q ss_conf 999986-89982999906
Q gi|254780450|r 747 RELRKT-YPSLKFIFISG 763 (803)
Q Consensus 747 ~~ir~~-~~~~~ii~~t~ 763 (803)
+.+|+. .|+--++.-|+
T Consensus 395 ~~~~~~L~~~G~~v~qs~ 412 (516)
T PRK03612 395 RLLKRRLAPDGLLVVQST 412 (516)
T ss_pred HHHHHHCCCCCEEEEECC
T ss_conf 999984499958999368
No 237
>PTZ00108 DNA topoisomerase II; Provisional
Probab=86.08 E-value=1.3 Score=22.20 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=23.8
Q ss_pred EEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHH----------HHHHHHHCCCCE
Q ss_conf 8999999788668844542023222210135776530388----------999998516754
Q gi|254780450|r 581 MVLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLS----------VVYGIIRQSGGY 632 (803)
Q Consensus 581 ~v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~----------i~~~iv~~~gG~ 632 (803)
.+.=.+.|+|.-|.|+.---|- |..--.+ .+|-|-|-| |+..|-++++|.
T Consensus 859 ~lL~y~~ddg~~iEP~~Y~Pii-PmvLvNG-~~GIGTGwSt~ip~ynp~dii~ni~r~l~ge 918 (1506)
T PTZ00108 859 PILKYLNEEGQKIEPQYYIPVI-PTILVNG-CEGIGTGYSSFIPNYNYKDIIDNIKRYINKE 918 (1506)
T ss_pred HHHHCCCCCCCCCCCCEECCCC-CEEEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 2550203689631543020556-6787337-7620266347789999999999999985699
No 238
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=85.86 E-value=2.2 Score=20.64 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCCCEEEEECCC-CCCCH-HHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 899999999999889899998---99899989998659995489985878-89888-99999999868998299990678
Q gi|254780450|r 691 DSVRRGSKRMLETRGYTVHEA---FSGTDALKVMEKLQGRVDIVISDVVM-PEMDG-PTLLRELRKTYPSLKFIFISGYA 765 (803)
Q Consensus 691 ~~~~~~~~~~L~~~g~~v~~a---~~g~eal~~~~~~~~~~dlil~D~~m-p~m~G-~~~~~~ir~~~~~~~ii~~t~~~ 765 (803)
|.--..++.+|+..||+|... .+..+-++.+.+. .+|+|-.-..| +.++. .++++.+|+..|+++|++=-.++
T Consensus 14 plGl~~la~~l~~~G~~V~~~d~~~~~~~i~~~i~~~--~pdiVgiS~~~~~~~~~~~~l~~~ik~~~p~~~iv~GG~~~ 91 (121)
T pfam02310 14 PLGLNYVAAALRAAGFEVILLGADVPPEDIVEAIRAE--NPDVVGLSALMTTNLPAAKELARLLKRIRPGVKVVVGGPHP 91 (121)
T ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 4899999999998599500102479999999999980--99999995232112113689999999859897599838763
No 239
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=85.18 E-value=2.4 Score=20.42 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=54.1
Q ss_pred HHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHHHHHHHHCCCCCEEEEECCCHHHHH
Q ss_conf 9999999998898999989--98999899986599954899858788988-89999999986899829999067858998
Q gi|254780450|r 694 RRGSKRMLETRGYTVHEAF--SGTDALKVMEKLQGRVDIVISDVVMPEMD-GPTLLRELRKTYPSLKFIFISGYAEDAFS 770 (803)
Q Consensus 694 ~~~~~~~L~~~g~~v~~a~--~g~eal~~~~~~~~~~dlil~D~~mp~m~-G~~~~~~ir~~~~~~~ii~~t~~~~~~~~ 770 (803)
...++..|++.||+|.... ...+-++.+.+. ..+|+|-+-...+.+. -.++++.+|+..|+++||+--.++. ...
T Consensus 5 l~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~-~~pdvvg~s~~~~~~~~~~~~~~~~k~~~p~~~iv~GG~h~t-~~p 82 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHAT-FFP 82 (127)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHC-CCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC-CCH
T ss_conf 999999999789957998578762039999864-996999999768899999999999999789978998598745-499
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 76760579807507
Q gi|254780450|r 771 KNLPKDAKFSFLSK 784 (803)
Q Consensus 771 ~~~~~~~~~~~l~K 784 (803)
+.+.....++|+-.
T Consensus 83 ~~~l~~~~~D~vv~ 96 (127)
T cd02068 83 EEILEEPGVDFVVI 96 (127)
T ss_pred HHHHHCCCCCEEEE
T ss_conf 99970758778996
No 240
>TIGR02373 photo_yellow photoactive yellow protein; InterPro: IPR012130 Members of this family are photoactive yellow protein, a cytosolic, 14-kDa light-sensing protein which has a 4-hydroxycinnamyl (p-coumaric acid) chromophore covalently linked to a Cys residue. The enzyme 4-coumarate--CoA ligase as described by IPR012743 from INTERPRO is required for its biosynthesis. The modified Cys is in a PAS domain, frequently found in signal transducing proteins. Members are known in alpha and gamma Proteobacteria that include Rhodobacter capsulatus, Halorhodospira halophila, Rhodospirillum centenum, etc.; GO: 0009881 photoreceptor activity, 0007602 phototransduction, 0018298 protein-chromophore linkage.
Probab=85.07 E-value=0.9 Score=23.39 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=15.6
Q ss_pred HCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCC
Q ss_conf 3467509998502069983155444445488466179866661011
Q gi|254780450|r 295 NNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHK 340 (803)
Q Consensus 295 e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~ 340 (803)
|+.|.|-..+|..|.|...|.+=-++ .|-.|..++|++++.=+.|
T Consensus 25 d~LpfGAiqlD~~G~I~~YN~aEg~l-~GR~P~~VIGrnFF~evAP 69 (126)
T TIGR02373 25 DSLPFGAIQLDGSGRILKYNAAEGEL-TGRDPERVIGRNFFKEVAP 69 (126)
T ss_pred CCCCCCEEEECCCCCHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCC
T ss_conf 25541048866988302110110001-3879773227434233278
No 241
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=84.93 E-value=2.4 Score=20.34 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCC
Q ss_conf 118999999852498099995999389810668867099
Q gi|254780450|r 24 PKIPLETIFMDSEPEGILITNERGHIIYANNAYNALTNA 62 (803)
Q Consensus 24 ~~~~~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~ 62 (803)
+.+..++.+++++|-||+++|.++++.|+||-....++.
T Consensus 72 ~~~~~~~~al~nmPiGii~~~e~~~veW~Npf~~~if~~ 110 (655)
T COG3887 72 QAEKSLEEALTNMPIGIILFNETNKVEWVNPFASKIFNK 110 (655)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHCCH
T ss_conf 999899999984882399986889568866889974675
No 242
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=84.45 E-value=2.5 Score=20.20 Aligned_cols=62 Identities=26% Similarity=0.259 Sum_probs=24.3
Q ss_pred ECCHHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 899899989998659995489985878898-8899999999868998299990678589987676
Q gi|254780450|r 711 AFSGTDALKVMEKLQGRVDIVISDVVMPEM-DGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLP 774 (803)
Q Consensus 711 a~~g~eal~~~~~~~~~~dlil~D~~mp~m-~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~ 774 (803)
|.-|.-|++++++.+..+|.|++-++.-|+ +|..+ .++...|+++||.+-....+.+...+.
T Consensus 159 AGQGTi~lEileq~~~~~d~v~vpvGGGGLisGia~--~~k~~~p~~~vIGVEp~~a~~~~~Sl~ 221 (347)
T COG1171 159 AGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIAT--ALKALSPEIKVIGVEPEGAPSMYASLK 221 (347)
T ss_pred ECCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHH--HHHHHCCCCEEEEEEECCCHHHHHHHH
T ss_conf 342589999998464568989995386479999999--999839997299981488858999997
No 243
>PRK13719 conjugal transfer transcriptional regulator TraJ; Provisional
Probab=82.08 E-value=2.1 Score=20.71 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=19.1
Q ss_pred HHHHHCCCEEEEECCCCCEEEEEHHHHHHCCC
Q ss_conf 99852498099995999389810668867099
Q gi|254780450|r 31 IFMDSEPEGILITNERGHIIYANNAYNALTNA 62 (803)
Q Consensus 31 ~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~ 62 (803)
++++..|-|+++-+.+|.++++|.+|...++.
T Consensus 23 ~~i~~~~~PvCIRn~sG~Fi~~N~~F~~~F~~ 54 (220)
T PRK13719 23 AFIDDYSIPACIRNEDGSFIFFNTLFSKEFLG 54 (220)
T ss_pred HHHHCCCCCEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 99971899648977899830152789999874
No 244
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit; InterPro: IPR005737 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit B (parE) of topoisomerase IV from Gram negative bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=80.90 E-value=2.4 Score=20.42 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=16.5
Q ss_pred HCCCCEEEEEEECEEEEEECCCCCCCCCCCCHHHHCCCCHHHHCCC
Q ss_conf 3467509998502069983155444445488466179866661011
Q gi|254780450|r 295 NNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHK 340 (803)
Q Consensus 295 e~~p~~I~~~d~~g~i~~~N~a~~~l~~g~~~~~~~g~~~~~~~~~ 340 (803)
+..|.-+|+=+-.|.+-...-.|+=+| .....++...++..+++-
T Consensus 240 ~~~~~~~F~G~~~~tvd~~~~~WAl~W-~~~~~~~~~~SY~N~iPT 284 (647)
T TIGR01055 240 NTLPKKPFVGNFEGTVDDEAVEWALLW-LPEGGELLMESYVNLIPT 284 (647)
T ss_pred CCCCCCCEECCCCCCHHHHHCCEEEEE-CCCCCHHHHHCCCCCCCC
T ss_conf 223455300232110111100244663-278840032041101578
No 245
>PRK01581 speE spermidine synthase; Validated
Probab=80.45 E-value=3.5 Score=19.19 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=5.0
Q ss_pred HHCCCCCCEEEEE
Q ss_conf 8659995489985
Q gi|254780450|r 722 EKLQGRVDIVISD 734 (803)
Q Consensus 722 ~~~~~~~dlil~D 734 (803)
++....||+||.|
T Consensus 210 ~~~~~~FDvIIVD 222 (363)
T PRK01581 210 SSPSSLYDVIIID 222 (363)
T ss_pred HCCCCCCCEEEEE
T ss_conf 6167544289995
No 246
>PRK08198 threonine dehydratase; Provisional
Probab=80.23 E-value=3.6 Score=19.14 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=7.4
Q ss_pred HHHHHHHHCCCEEE
Q ss_conf 99999998898999
Q gi|254780450|r 696 GSKRMLETRGYTVH 709 (803)
Q Consensus 696 ~~~~~L~~~g~~v~ 709 (803)
-+...|+..||.+.
T Consensus 390 ~i~~~L~~~Gy~~~ 403 (406)
T PRK08198 390 EILAALRDAGYEVK 403 (406)
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999997899459
No 247
>PRK06382 threonine dehydratase; Provisional
Probab=79.11 E-value=3.9 Score=18.90 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHCCCEEE
Q ss_conf 99999999998898999
Q gi|254780450|r 693 VRRGSKRMLETRGYTVH 709 (803)
Q Consensus 693 ~~~~~~~~L~~~g~~v~ 709 (803)
-.+-+...|+..||++.
T Consensus 382 h~~~i~~~l~~~G~~~~ 398 (400)
T PRK06382 382 HLDRILNALREMGYKFN 398 (400)
T ss_pred HHHHHHHHHHHCCCEEE
T ss_conf 99999999998789683
No 248
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=78.86 E-value=3.4 Score=19.30 Aligned_cols=92 Identities=22% Similarity=0.268 Sum_probs=51.4
Q ss_pred EEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 99999978866884454202322221013577653038899999851675499996188942999994375766443333
Q gi|254780450|r 582 VLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQESH 661 (803)
Q Consensus 582 v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~~~~~~~ 661 (803)
..++++-.|+-+....-.++=-||...|+.++ .-.+.+......+-| +-+++++.
T Consensus 56 ~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~k--------------l~~~~~~~~~~~~~~-~~~l~~~~---------- 110 (179)
T COG0503 56 KIVTIEARGIPLAAAVALELGVPFVPVRKKGK--------------LPEESVVETYYLEYG-SETLELHK---------- 110 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEEECCC--------------CCCCCEEEEEEECCC-EEEEEEEH----------
T ss_conf 99997377840499999985998899995687--------------886435789986064-17999872----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHH---HHHHHHHHHHCCCEEEEEC
Q ss_conf 33222235444453334787569997698899---9999999998898999989
Q gi|254780450|r 662 YSHDIAIIPQEEPADLTGNSAIVLLVEDEDSV---RRGSKRMLETRGYTVHEAF 712 (803)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~---~~~~~~~L~~~g~~v~~a~ 712 (803)
.. . . .+.+||||||=-+. ...+.+++++.|.+|..+.
T Consensus 111 ---~~-l---------~-~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~ 150 (179)
T COG0503 111 ---DA-L---------K-PGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAA 150 (179)
T ss_pred ---HH-C---------C-CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf ---00-6---------8-999899996540156789999999998899899999
No 249
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=78.83 E-value=4 Score=18.84 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=35.0
Q ss_pred EEEEECHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
Q ss_conf 26998716999999998742276520678-857999998504210122455667889789999997886688445
Q gi|254780450|r 524 WGVKTDLSQFEQVLVNLCVNAHHAIMLKE-SGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDI 597 (803)
Q Consensus 524 ~~v~~D~~~l~qvl~NLl~NA~~A~~~~~-~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~ 597 (803)
..+.|||.|.+.|-.|++.|+ ....+ .|-.+.. +.-.| ..++|.=+|+|.|.-.
T Consensus 17 Vl~~GDP~Ra~~iA~~~l~~~---~~v~~~R~~~~yT---------------G~y~G--~~VtV~stGmG~ps~~ 71 (233)
T PRK13374 17 VLMPGDPLRAKYIAETYLEDV---VQVTNVRNMLGFT---------------GTYKG--KKISVMGHGMGIPSMV 71 (233)
T ss_pred EEECCCHHHHHHHHHHHHHCC---EEEECCCCEEEEE---------------EEECC--EEEEEEECCCCCCHHH
T ss_conf 994689899999998760085---9952014348899---------------99999--9989985478843012
No 250
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=78.60 E-value=4 Score=18.79 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=34.9
Q ss_pred EEECCCCCCHHH--HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf 997886688445--420232222101357765303889999985167549999618894299999
Q gi|254780450|r 586 VEDTGIGMSPDI--MEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF 648 (803)
Q Consensus 586 V~D~G~GI~~~~--~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~ 648 (803)
|---|||-|.+. ...+++.| ..+..=-|-=||. +.|++.+||++.---+|=.|-+=.+.
T Consensus 50 viSPGPG~P~d~G~~~~~i~~~-~~~~PiLGVCLGH---Qai~~~fGg~V~~a~~~~HGK~s~i~ 110 (191)
T COG0512 50 VISPGPGTPKDAGISLELIRRF-AGRIPILGVCLGH---QAIAEAFGGKVVRAKEPMHGKTSIIT 110 (191)
T ss_pred EECCCCCCHHHCCHHHHHHHHH-CCCCCEEEECCCH---HHHHHHHCCEEEECCCCCCCEEEEEE
T ss_conf 9848997937736189999986-0899889987437---89999739788755977678125540
No 251
>PRK07334 threonine dehydratase; Provisional
Probab=78.41 E-value=4.1 Score=18.76 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=7.6
Q ss_pred HHHHHHHHCCCEEE
Q ss_conf 99999998898999
Q gi|254780450|r 696 GSKRMLETRGYTVH 709 (803)
Q Consensus 696 ~~~~~L~~~g~~v~ 709 (803)
-+...|+..||+|.
T Consensus 384 ~l~~~L~~~Gy~~~ 397 (399)
T PRK07334 384 EVMAALRAAGFVAR 397 (399)
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999997799856
No 252
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854 Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP . 5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=78.37 E-value=2 Score=20.88 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=8.3
Q ss_pred CEEEE-EECCCCCEEEEE-C
Q ss_conf 16999-814897226998-7
Q gi|254780450|r 512 QVKLT-VDYERDLWGVKT-D 529 (803)
Q Consensus 512 ~i~~~-~~~~~~~~~v~~-D 529 (803)
.+.+. -.+|..-|+++| |
T Consensus 390 EVH~riasPP~~~PC~YGiD 409 (467)
T TIGR01134 390 EVHVRIASPPVRYPCYYGID 409 (467)
T ss_pred EEEEEECCCCCCCCCCCCCC
T ss_conf 89876258888865833353
No 253
>KOG0355 consensus
Probab=77.62 E-value=4 Score=18.79 Aligned_cols=22 Identities=9% Similarity=0.554 Sum_probs=15.9
Q ss_pred EEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 07507979999999999985137
Q gi|254780450|r 780 SFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 780 ~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
.|| -+|++.++..-++..+.+.
T Consensus 791 ~~i-~n~n~~~iv~~~r~~~~~~ 812 (842)
T KOG0355 791 TFI-PNYNPREIVKNIRRLINGE 812 (842)
T ss_pred CCC-CCCCHHHHHHHHHHHHCCC
T ss_conf 668-8889899999998863699
No 254
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=77.07 E-value=4.4 Score=18.50 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=50.7
Q ss_pred CCHHH-HHHHHHHHHHCCCEEEE--ECC-HHHHHHHHHHCCCCCCEEEEECCCCC-CCH-HHHHHHHHHHC--CCCCEEE
Q ss_conf 98899-99999999988989999--899-89998999865999548998587889-888-99999999868--9982999
Q gi|254780450|r 689 DEDSV-RRGSKRMLETRGYTVHE--AFS-GTDALKVMEKLQGRVDIVISDVVMPE-MDG-PTLLRELRKTY--PSLKFIF 760 (803)
Q Consensus 689 D~~~~-~~~~~~~L~~~g~~v~~--a~~-g~eal~~~~~~~~~~dlil~D~~mp~-m~G-~~~~~~ir~~~--~~~~ii~ 760 (803)
|-+++ ..+++.+|+..||+|+. +.- ..+-++.++++ .+|+|-+=..|+. |.. .++++.+|+.. +++||+
T Consensus 93 d~H~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~~--~~divglS~~~~~~~~~~~~~i~~lr~~~~~~~v~i~- 169 (201)
T cd02070 93 DIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEH--KPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVM- 169 (201)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH--CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEE-
T ss_conf 7738999999999987897799778999979999999972--9899999625668899999999999972898898599-
Q ss_pred EECCC-HHHHHH
Q ss_conf 90678-589987
Q gi|254780450|r 761 ISGYA-EDAFSK 771 (803)
Q Consensus 761 ~t~~~-~~~~~~ 771 (803)
+-|.+ ++...+
T Consensus 170 vGG~a~~~~~a~ 181 (201)
T cd02070 170 VGGAPVNQEFAD 181 (201)
T ss_pred EECCCCCHHHHH
T ss_conf 988017999999
No 255
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=76.98 E-value=4.4 Score=18.48 Aligned_cols=56 Identities=21% Similarity=0.199 Sum_probs=34.5
Q ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHH
Q ss_conf 7226998716999999998742276520678857999998504210122455667889789999997886688445
Q gi|254780450|r 522 DLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDI 597 (803)
Q Consensus 522 ~~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~ 597 (803)
.+..+.|||.|..+|-. |+.|+ .+..+.-+-+.-+.... | ..++|.-||||.|...
T Consensus 18 ~~vilpGdP~R~~~iA~-lld~~---~~va~~Ref~~~~g~~~--------------g--~~v~v~StGIGgPSaa 73 (248)
T COG2820 18 TLVILPGDPERVEKIAK-LLDNP---VLVASNREFRTYTGTYN--------------G--KPVTVCSTGIGGPSAA 73 (248)
T ss_pred CEEEECCCHHHHHHHHH-HHCCC---HHHHHCCCEEEEEEEEC--------------C--EEEEEEECCCCCCHHH
T ss_conf 42881498789999999-85260---11131331588876875--------------8--1889983488971099
No 256
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=76.44 E-value=4.6 Score=18.38 Aligned_cols=95 Identities=14% Similarity=0.181 Sum_probs=59.3
Q ss_pred CCHHH-HHHHHHHHHHCCCEEEEE---CCHHHHHHHHHHCCCCCCEEEEECCCCC-CCH-HHHHHHHHHHC-CCCCEEEE
Q ss_conf 98899-999999999889899998---9989998999865999548998587889-888-99999999868-99829999
Q gi|254780450|r 689 DEDSV-RRGSKRMLETRGYTVHEA---FSGTDALKVMEKLQGRVDIVISDVVMPE-MDG-PTLLRELRKTY-PSLKFIFI 761 (803)
Q Consensus 689 D~~~~-~~~~~~~L~~~g~~v~~a---~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G-~~~~~~ir~~~-~~~~ii~~ 761 (803)
|-+++ ..+++.+|+..||+|+-- ....+-++.+.++ .+|+|.+=..|+. |.. -++...+|+.. +++| |++
T Consensus 10 D~H~iG~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~--~~d~I~lS~~~~~~~~~~~~~i~~l~~~g~~~i~-v~v 86 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEE--DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIP-VLV 86 (119)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCE-EEE
T ss_conf 5677899999999997899899899999999999999970--9999999622024268999999999976999985-999
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 06785899876760579807507979
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFS 787 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~ 787 (803)
-|..-........+.+ .+...+|-+
T Consensus 87 GG~~~~~~~~~~~~~G-ad~~~~~a~ 111 (119)
T cd02067 87 GGAIVTRDFKFLKEIG-VDAYFGPAT 111 (119)
T ss_pred ECCCCCHHHHHHHHCC-CCEEECCHH
T ss_conf 8998974399999869-979977807
No 257
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=75.94 E-value=0.93 Score=23.27 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=8.8
Q ss_pred EEECHHHHHHHHHHH
Q ss_conf 998716999999998
Q gi|254780450|r 526 VKTDLSQFEQVLVNL 540 (803)
Q Consensus 526 v~~D~~~l~qvl~NL 540 (803)
+.....++.+||-|=
T Consensus 452 LNVeka~~~kil~N~ 466 (635)
T COG0187 452 LNVEKARLDKILKNE 466 (635)
T ss_pred HHHHHCCHHHHHHHH
T ss_conf 123223576554338
No 258
>KOG1562 consensus
Probab=75.66 E-value=4.8 Score=18.24 Aligned_cols=61 Identities=30% Similarity=0.345 Sum_probs=26.2
Q ss_pred EEEECCCHHHHHHHHHHHHHC--CCE---EE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 999769889999999999988--989---99-9899899989998659995489985878898889999
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETR--GYT---VH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLL 746 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~--g~~---v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~ 746 (803)
|+++|=|..+.++-..+|... ||+ |. .-.||..=++.+.++ +||+|++|..=|.|.+-.+.
T Consensus 148 i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~--~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562 148 ILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN--PFDVIITDSSDPVGPACALF 214 (337)
T ss_pred EEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCC--CCEEEEEECCCCCCHHHHHH
T ss_conf 67543367899999987388753678971489955689999870369--74189971677675588988
No 259
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=74.94 E-value=5 Score=18.12 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=57.7
Q ss_pred EEEECCCHH-----HHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999769889-----999999999988989--99-9899899989998659995489985878898889999999986899
Q gi|254780450|r 684 VLLVEDEDS-----VRRGSKRMLETRGYT--VH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPS 755 (803)
Q Consensus 684 iLvvdD~~~-----~~~~~~~~L~~~g~~--v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~ 755 (803)
|| +-|||. +.+.+++.=+..+|. |. ++.|.+||.+++.. -.|+|++| .|+..++-+.++.....
T Consensus 159 vm-iKDNHi~~~Gs~~~Av~~aR~~~~~~~kiEVEVenlE~a~eA~~A---GADiImLD----Nm~p~~~~~av~~~~~~ 230 (276)
T TIGR00078 159 VM-IKDNHIAAAGSIEKAVKRARAALPFAKKIEVEVENLEEAEEAAEA---GADIIMLD----NMKPEEIKEAVELLKGR 230 (276)
T ss_pred EE-EEECEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHC---CCCEEECC----CCCHHHHHHHHHHHHHC
T ss_conf 89-750206606898999999998489980799862898999999970---99599806----98947999999999702
Q ss_pred CC--EEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 82--99990678589987676057980750
Q gi|254780450|r 756 LK--FIFISGYAEDAFSKNLPKDAKFSFLS 783 (803)
Q Consensus 756 ~~--ii~~t~~~~~~~~~~~~~~~~~~~l~ 783 (803)
-| ++=+||.-...--+.+... +++|||
T Consensus 231 ~p~~~~EaSGGitl~n~~~ya~~-gVD~IS 259 (276)
T TIGR00078 231 NPNVLVEASGGITLDNIEEYAET-GVDVIS 259 (276)
T ss_pred CCEEEEEEECCCCHHHHHHHHHC-CCCEEE
T ss_conf 99089998369987899998408-975883
No 260
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=74.07 E-value=5.3 Score=17.97 Aligned_cols=28 Identities=11% Similarity=0.351 Sum_probs=16.4
Q ss_pred CCCEEEEECCCCCEEEEHHHHHHHCCCC
Q ss_conf 5961999929996897646798642999
Q gi|254780450|r 169 SPVGFMSADHQGKILYINATLAEWIGID 196 (803)
Q Consensus 169 a~~gi~~~D~~g~i~~~N~~~~~llG~~ 196 (803)
.+.+.+.+|.+|+++-.|.+...+++.+
T Consensus 231 ~~~~~lavd~~grvl~at~aA~~~La~~ 258 (606)
T COG3284 231 QSEALLAVDQDGRVLGATRAARQLLALT 258 (606)
T ss_pred CCCEEEEECCCCHHHHCCHHHHHHHCCC
T ss_conf 6540001257665553228899762344
No 261
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=73.80 E-value=5.3 Score=17.93 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=56.4
Q ss_pred ECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCHH--HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEE------
Q ss_conf 89989998999865999548998587889-8889--99999998689982999906785899876760579807------
Q gi|254780450|r 711 AFSGTDALKVMEKLQGRVDIVISDVVMPE-MDGP--TLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSF------ 781 (803)
Q Consensus 711 a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G~--~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~------ 781 (803)
-.+..+.++.+.+.+. =.++++|+.--| |.|+ ++++++++. .++|+++.-|-+.-.+-+.+...+..+.
T Consensus 147 ~~~~~e~~~~~~~~g~-~eii~tdI~~dGt~~G~d~~~~~~i~~~-~~~pviasGGv~s~~di~~l~~~g~~gvivG~Al 224 (240)
T PRK13585 147 GKDPVEWAQRFEELGA-GSILFTNVDVEGLLQGVNPEPVRELVDS-VDIPVIASGGVTSLDDVKALKEAGAAGVVVGSAL 224 (240)
T ss_pred CCCHHHHHHHHHHCCC-CEEEEEEECCHHHHCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHH
T ss_conf 8635577788886387-3589864233223257898999999986-8999999889999999999997899789987687
Q ss_pred EECCCCHHHHHHHHH
Q ss_conf 507979999999999
Q gi|254780450|r 782 LSKPFSLKQLATSVH 796 (803)
Q Consensus 782 l~KP~~~~~L~~~i~ 796 (803)
..+=++++++.+.++
T Consensus 225 ~~g~i~l~e~~~~~~ 239 (240)
T PRK13585 225 YKGKFTLEEALEAAE 239 (240)
T ss_pred HCCCCCHHHHHHHHH
T ss_conf 679978999999964
No 262
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=73.72 E-value=5.4 Score=17.92 Aligned_cols=17 Identities=6% Similarity=0.397 Sum_probs=10.2
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 87889888999999998
Q gi|254780450|r 735 VVMPEMDGPTLLRELRK 751 (803)
Q Consensus 735 ~~mp~m~G~~~~~~ir~ 751 (803)
+.-|+|+.-|+.+....
T Consensus 411 ~~~~~ls~~ei~~~~~~ 427 (472)
T TIGR03471 411 ISYPHLSREEIFDGVER 427 (472)
T ss_pred CCCCCCCHHHHHHHHHH
T ss_conf 58999899999999999
No 263
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=73.37 E-value=5.5 Score=17.86 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 999769889999999999988989-99-9899899989998659995489985
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYT-VH-EAFSGTDALKVMEKLQGRVDIVISD 734 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~-v~-~a~~g~eal~~~~~~~~~~dlil~D 734 (803)
|..||-|......++.-+..+|.+ +. ...| |+..+.....+||+|.+|
T Consensus 78 v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~d---a~~~L~~~~~~fDlIF~D 127 (198)
T PRK10909 78 ATLLEMDRAVSQQLIKNLATLKAGNARVVNTN---ALSFLAQPGTPHNVVFVD 127 (198)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCEEEEEHH---HHHHHHCCCCCEEEEEEC
T ss_conf 99997899999999999998488867999556---999862559952189989
No 264
>PRK05866 short chain dehydrogenase; Provisional
Probab=73.15 E-value=5.5 Score=17.83 Aligned_cols=23 Identities=4% Similarity=0.023 Sum_probs=10.4
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 88988899999999868998299
Q gi|254780450|r 737 MPEMDGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 737 mp~m~G~~~~~~ir~~~~~~~ii 759 (803)
||.|+-.++++.+-...+.-+..
T Consensus 239 ~~~~~pe~~A~~iv~a~~~r~~~ 261 (290)
T PRK05866 239 LPALTADEAAEWMVTAARTRPVR 261 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 88899999999999998449879
No 265
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=72.43 E-value=5.7 Score=17.71 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=34.4
Q ss_pred EEEEECHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHH
Q ss_conf 26998716999999998742276520678-85799999850421012245566788978999999788668844
Q gi|254780450|r 524 WGVKTDLSQFEQVLVNLCVNAHHAIMLKE-SGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPD 596 (803)
Q Consensus 524 ~~v~~D~~~l~qvl~NLl~NA~~A~~~~~-~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~ 596 (803)
..+.|||.|.++|-.+++.|+ ....+ .|-.+.. +.-.| ..++|.=+|+|.|.-
T Consensus 16 vl~~GDP~Ra~~ia~~~l~~~---~~v~~~R~~~tyT---------------G~y~G--~~itV~stGmG~ps~ 69 (235)
T PRK05819 16 VLMPGDPLRAKYIAETFLEDV---VCVNEVRGMLGFT---------------GTYKG--KRVSVMGHGMGIPSI 69 (235)
T ss_pred EEECCCHHHHHHHHHHHHHCC---EEEEECCCEEEEE---------------EEECC--EEEEEEECCCCCCHH
T ss_conf 993789799999999872176---8842105469999---------------99999--999999437887109
No 266
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=71.35 E-value=6 Score=17.55 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=52.8
Q ss_pred EEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 99999978866884454202322221013577653038899999851675499996188942999994375766443333
Q gi|254780450|r 582 VLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQESH 661 (803)
Q Consensus 582 v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP~~~~~~~~~~~ 661 (803)
..+++..+||.+.-..-..+=-|+.-.|+. +.+|++= .+ +..+.+. .|...+++||.
T Consensus 114 kVlT~at~GIplA~~~A~~l~vplviakk~-k~~~~~~-----~~-----~~~v~~~--~~~~~tl~l~k---------- 170 (238)
T PRK08558 114 KVLTAATDGIPLAVAAASRFGADLVYAKQY-KEPGVEK-----FY-----EEYQYLA--SGRPVTLYLPA---------- 170 (238)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCEEEEEEC-CCCCCCC-----EE-----EEEEECC--CCCEEEEEEEH----------
T ss_conf 899846888539999999809978999813-6777465-----28-----9999748--99579999558----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH---HHHHHHHHCCCEEEEE
Q ss_conf 3322223544445333478756999769889999---9999999889899998
Q gi|254780450|r 662 YSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRR---GSKRMLETRGYTVHEA 711 (803)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~---~~~~~L~~~g~~v~~a 711 (803)
... ..+.+||+|||=-.+.. .+..+++..|.+|..+
T Consensus 171 ---~~l-----------~~g~~VLIVDD~~~tG~T~~~~~~l~~~~ga~v~G~ 209 (238)
T PRK08558 171 ---WAL-----------KRGERVLIVDDIIRSGETQRALLELCRQAGADVVGV 209 (238)
T ss_pred ---HHC-----------CCCCEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEE
T ss_conf ---997-----------999869998356343738999999999869979999
No 267
>pfam07568 HisKA_2 Histidine kinase. This is the dimerization and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with pfam00512 and pfam07536. It is usually found adjacent to a C-terminal ATPase domain (pfam02518). This domain is found in a wide range of Bacteria and also several Archaea.
Probab=71.13 E-value=6.1 Score=17.51 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 4256641589999999999850799847-88889999999888876430045421200584358534678999999998
Q gi|254780450|r 427 IAHDFNNVLTAILLSSDHLLLQSRSSDA-SFADLMEIKHNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQ 504 (803)
Q Consensus 427 isHelr~pL~~I~g~~~ll~~~~~~~~~-~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~~~~~~~l~~~i~~~~~~~~ 504 (803)
+.|-++|-|..|.++..+-... ..+| .+..+..+..... ...++.+.|- .+.....+++.+++.++...+.
T Consensus 2 v~HRVKNnLq~i~sll~lq~~~--~~~~~~~~~l~~~~~RI~-a~a~vH~~Ly----~~~~~~~v~~~~yl~~L~~~l~ 73 (76)
T pfam07568 2 IHHRVKNNLQVISSLLRLQARR--AKDEEVKEALRESQNRVL-SMALIHEELY----KSEDLDTVDFSEYLEKLTENLF 73 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHH-HHHHHHHHHH----CCCCCCEECHHHHHHHHHHHHH
T ss_conf 0388985799999999987342--599999999999999999-9999999997----6999784639999999999999
No 268
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=70.78 E-value=6.2 Score=17.46 Aligned_cols=10 Identities=10% Similarity=0.235 Sum_probs=4.1
Q ss_pred CHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780450|r 787 SLKQLATSVH 796 (803)
Q Consensus 787 ~~~~L~~~i~ 796 (803)
+.+.|.++|+
T Consensus 296 d~~~l~~aL~ 305 (334)
T cd06342 296 DPAKVADALR 305 (334)
T ss_pred CHHHHHHHHH
T ss_conf 9999999997
No 269
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=69.52 E-value=1.9 Score=21.16 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHCCCCCCCCCCC-CCCCCCHHH------HHHHHHHCCCCEEEEEEC
Q ss_conf 8668844542023222210135-776530388------999998516754999961
Q gi|254780450|r 590 GIGMSPDIMEKIFEPFFTTKKV-GEGTGLGLS------VVYGIIRQSGGYILPESE 638 (803)
Q Consensus 590 G~GI~~~~~~~iFepF~ttk~~-g~GtGLGL~------i~~~iv~~~gG~i~v~S~ 638 (803)
=|||+|+.++-.-+.=| |.. =+|||||=. .+|+.+ ..|=-|-..|+
T Consensus 293 yPG~~p~il~~~~d~Gy--kGiViEGTGLGHvs~~~ip~i~ra~-d~Gv~V~MTSQ 345 (413)
T TIGR02153 293 YPGLDPEILEFLVDKGY--KGIVIEGTGLGHVSEDWIPSIKRAT-DDGVPVVMTSQ 345 (413)
T ss_pred CCCCCHHHHHHHHCCCC--EEEEEECCCCCCCHHHHHHHHHHHH-HCCCEEEEEEE
T ss_conf 38988889999851871--5999833787555235899999987-58968999611
No 270
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=69.44 E-value=6.6 Score=17.27 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=43.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EEEEC--CHHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHHHCCCC
Q ss_conf 6999769889999999999988989--99989--9899989998659995489985878898-8899999999868998
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYT--VHEAF--SGTDALKVMEKLQGRVDIVISDVVMPEM-DGPTLLRELRKTYPSL 756 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~--v~~a~--~g~eal~~~~~~~~~~dlil~D~~mp~m-~G~~~~~~ir~~~~~~ 756 (803)
++.-+|=|+......++.++..|.. |.... ++.+.++. -..++||+|++|.-=+.- .=++ +.++-..|+-
T Consensus 86 ~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~--~~~~~fDliFIDadK~~yp~~le--~~~~lLr~GG 160 (219)
T COG4122 86 RLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR--LLDGSFDLVFIDADKADYPEYLE--RALPLLRPGG 160 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHH--CCCCCCCEEEEECCHHHCHHHHH--HHHHHHCCCC
T ss_conf 699970798999999999997597652898835747999973--34788568998378435999999--9999737896
No 271
>PRK13117 consensus
Probab=69.18 E-value=6.7 Score=17.23 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=7.6
Q ss_pred HHHHHCCCCEEEEEECCC
Q ss_conf 999851675499996188
Q gi|254780450|r 623 YGIIRQSGGYILPESEVG 640 (803)
Q Consensus 623 ~~iv~~~gG~i~v~S~~g 640 (803)
+.|++.-.|.|.+-|..|
T Consensus 164 ~~i~~~a~GFiY~vs~~G 181 (268)
T PRK13117 164 RQIASLGRGYTYLLSRAG 181 (268)
T ss_pred HHHHHHCCCEEEEEECCC
T ss_conf 999974798599983677
No 272
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=68.72 E-value=6.8 Score=17.17 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=29.5
Q ss_pred ECCCCCCHHHH--HHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 78866884454--202322221013577653038899999851675499996188942999994
Q gi|254780450|r 588 DTGIGMSPDIM--EKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 588 D~G~GI~~~~~--~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
=-|||-|.+.- ..+...|+..+-.=-|-=||. +-|+..+||+|.-..++..|-+-.+..
T Consensus 53 SpGPg~P~~~~~~~~~i~~~~~~~iPILGIClG~---Q~ia~~~Gg~v~~~~~~~hG~~~~i~~ 113 (221)
T PRK07765 53 SPGPGTPERAGASIDMVRACAAAGTPLLGVCLGH---QAIGVAFGATVDRAPELLHGKTSSVHH 113 (221)
T ss_pred CCCCCCHHHCCCCHHHHHHHHCCCCCEEEEEHHH---HHHHHHHCCEEEECCCCCEEEEEEEEE
T ss_conf 6999980116724889987532599889870999---999998397898889553656879998
No 273
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.54 E-value=6.9 Score=17.14 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=50.7
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99976988999999999998898999989-9899989998659995489985878898-889999999986899829999
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAF-SGTDALKVMEKLQGRVDIVISDVVMPEM-DGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~~a~-~g~eal~~~~~~~~~~dlil~D~~mp~m-~G~~~~~~ir~~~~~~~ii~~ 761 (803)
+.++|.|+.. .+.+++.|+.|..-. +=.+-|+.+.-. +..+++.-+ |+. +-..+++.+|+.+|++||++=
T Consensus 426 ~vviD~d~~~----V~~~r~~G~~v~yGDat~~~vL~~AGi~--~A~~vViai--~d~~~~~~iv~~~r~~~P~l~I~aR 497 (602)
T PRK03659 426 ITVLERDISA----VNLMRKYGYKVYYGDATQLELLRAAGAE--KAEAIVITC--NEPEDTMKLVELCQQHFPHLHILAR 497 (602)
T ss_pred EEEEECCHHH----HHHHHHCCCEEEEECCCCHHHHHHCCCC--CCCEEEEEE--CCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999786799----9999978990897589999999867904--058899982--9899999999999987869969998
Q ss_pred ECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 0678589987676057980750
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLS 783 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~ 783 (803)
+-+-.+ ...+.+.+...+++
T Consensus 498 ar~~~~--~~~L~~~Ga~~vv~ 517 (602)
T PRK03659 498 ARGRVE--AHELLQAGVTQFSR 517 (602)
T ss_pred ECCHHH--HHHHHHCCCCEEEC
T ss_conf 697899--99999789997866
No 274
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=67.12 E-value=7.3 Score=16.95 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=70.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 75699976988999999999998898999989---------989998999865999548998587889888999999998
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAF---------SGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRK 751 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~---------~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~ 751 (803)
+.+||++=-+ --|+++.+.|+..|++|..+. +..+-.+.++.. .+|.|+.= +|. .++.+-+
T Consensus 130 g~rVLi~rG~-gGR~~L~~~L~~rGa~V~~~~~YrR~~p~~~~~~~~~~~~~~--~id~i~~T------S~e-~l~~l~~ 199 (255)
T PRK05752 130 DPRVLIMRGE-GGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAE--RLNGLVVS------SGQ-GFEHLLQ 199 (255)
T ss_pred CCEEEEEECC-CCHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHC--CCCEEEEC------CHH-HHHHHHH
T ss_conf 8879998167-617899999998899898998788438999849999999808--99999988------199-9999999
Q ss_pred H-------CCCCCEEEEECCCHHHHHHHHHHCCCC-EEEECCCCHHHHHHHHHHHHCCCC
Q ss_conf 6-------899829999067858998767605798-075079799999999999851379
Q gi|254780450|r 752 T-------YPSLKFIFISGYAEDAFSKNLPKDAKF-SFLSKPFSLKQLATSVHELLQSDS 803 (803)
Q Consensus 752 ~-------~~~~~ii~~t~~~~~~~~~~~~~~~~~-~~l~KP~~~~~L~~~i~~~L~~~~ 803 (803)
. ..++|++..| +-..+...+.|.- -+..+..+.+.|.++|+++.+.-+
T Consensus 200 l~~~~~~~l~~~~lvv~s----~RiA~~A~~lG~~~v~~a~~as~~all~AL~~~~ap~~ 255 (255)
T PRK05752 200 LAGADWPELARLPLFVPS----PRVAEQARAAGAQRVVDCRGASAAALLAALRRQAAPAS 255 (255)
T ss_pred HHHHHHHHHCCCCEEEEC----HHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 710457986388399838----99999999869996688999997999999998534789
No 275
>TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively. This entry represents the B subunit (gyrB) as found predominantly in bacteria, but does not include the topoisomerase II enzymes composed of a single polypeptide, as are found in most eukaryotes. GyrB has two functional domains: an N-terminal ATPase and a C-terminal responsible for subunit interactions, the latter differing between subunit B and single polypeptide topoisomerase II . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome.
Probab=66.89 E-value=3.2 Score=19.53 Aligned_cols=13 Identities=23% Similarity=0.235 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999987422
Q gi|254780450|r 532 QFEQVLVNLCVNA 544 (803)
Q Consensus 532 ~l~qvl~NLl~NA 544 (803)
.+.|++..|+.++
T Consensus 732 ~~~~~~~~l~~~~ 744 (818)
T TIGR01059 732 SLEEALDKLVELG 744 (818)
T ss_pred CHHHHHHHHHHCC
T ss_conf 5899999998407
No 276
>PRK05899 transketolase; Reviewed
Probab=66.65 E-value=7.5 Score=16.89 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHHC
Q ss_conf 799999999999851
Q gi|254780450|r 786 FSLKQLATSVHELLQ 800 (803)
Q Consensus 786 ~~~~~L~~~i~~~L~ 800 (803)
++.+.+.++++++|+
T Consensus 647 ld~~~I~~~~~~~La 661 (661)
T PRK05899 647 FTVENIVAAAKELLA 661 (661)
T ss_pred CCHHHHHHHHHHHHC
T ss_conf 899999999999749
No 277
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=65.94 E-value=5.5 Score=17.86 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=6.0
Q ss_pred CHHHHHHHHH
Q ss_conf 4256641589
Q gi|254780450|r 427 IAHDFNNVLT 436 (803)
Q Consensus 427 isHelr~pL~ 436 (803)
+-||+||||.
T Consensus 206 ~~~Dlr~plp 215 (354)
T COG1568 206 FVFDLRNPLP 215 (354)
T ss_pred EEEHHCCCCH
T ss_conf 0305104583
No 278
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=65.89 E-value=7.7 Score=16.79 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=10.1
Q ss_pred EEECCCCHHHHHHH
Q ss_conf 75079799999999
Q gi|254780450|r 781 FLSKPFSLKQLATS 794 (803)
Q Consensus 781 ~l~KP~~~~~L~~~ 794 (803)
+=.||.+.+++.++
T Consensus 241 ~H~~~~~~~e~~~a 254 (255)
T cd02012 241 WHGKPLGEEEVELA 254 (255)
T ss_pred CCCCCCCHHHHHHH
T ss_conf 00699998999962
No 279
>PRK06608 threonine dehydratase; Provisional
Probab=65.42 E-value=7.9 Score=16.73 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=17.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf 99976988999999999998898999989989998999
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVM 721 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~ 721 (803)
+..|+|++ +...++.+++..|.-|. .++.-++..+
T Consensus 255 ~v~V~d~e-i~~a~~~L~~~~gi~vE--ps~a~alAal 289 (330)
T PRK06608 255 FYLVEEYE-IYYWTAWLTHLLKVICE--PSSAINMASV 289 (330)
T ss_pred EEEECHHH-HHHHHHHHHHHCCCEEH--HHHHHHHHHH
T ss_conf 89989999-99999999998596982--9999999999
No 280
>TIGR01622 SF-CC1 splicing factor, CC1-like family; InterPro: IPR006509 These sequences represent a subfamily of RNA splicing factors including the Pad-1 protein (Neurospora crassa), CAPER (mouse) and CC1.3 (human). All are characterised by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 human paralogs, two) RNA recognition domains. These splicing factors are closely related to the U2AF splicing factor family (IPR006529 from INTERPRO). ; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus.
Probab=64.72 E-value=6.5 Score=17.33 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=7.2
Q ss_pred HHHHCCCCEEEEEEC
Q ss_conf 998516754999961
Q gi|254780450|r 624 GIIRQSGGYILPESE 638 (803)
Q Consensus 624 ~iv~~~gG~i~v~S~ 638 (803)
.=++.|||.|.+.+-
T Consensus 465 eEc~k~G~vv~iy~d 479 (531)
T TIGR01622 465 EECSKYGGVVHIYVD 479 (531)
T ss_pred HHHHCCCCEEEEEEE
T ss_conf 998436986899870
No 281
>PRK05670 anthranilate synthase component II; Provisional
Probab=64.57 E-value=8.2 Score=16.62 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=26.9
Q ss_pred CCCCCCHHHH--HHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
Q ss_conf 8866884454--20232222101357765303889999985167549999618894299999
Q gi|254780450|r 589 TGIGMSPDIM--EKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIF 648 (803)
Q Consensus 589 ~G~GI~~~~~--~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~ 648 (803)
.|||-|.+.- ..+.+.|...... -|--||.-+ |....||++.-...+..|.+-.+.
T Consensus 51 ~GPg~P~~~~~~~~~i~~~~~~iPi-LGIClG~Ql---ia~~~Gg~v~~~~~~~hG~~~~i~ 108 (192)
T PRK05670 51 PGPGTPAEAGISLELIREFAGKVPI-LGVCLGHQA---IGEAFGGKVVRAKEIMHGKTSPIE 108 (192)
T ss_pred CCCCCHHHCCCHHHHHHHHCCCCCE-EEEEHHHHH---HHHHCCCEEEECCCCCCCEEEEEE
T ss_conf 9999936605549999973469978-998477899---998719738888863637048999
No 282
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=64.38 E-value=8.2 Score=16.60 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=29.4
Q ss_pred ECCCCCCHHHHHH--CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 7886688445420--23222210135776530388999998516754999961889429999943
Q gi|254780450|r 588 DTGIGMSPDIMEK--IFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 588 D~G~GI~~~~~~~--iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
=.|||=|.+.-.. +...|. .+-.=-|--||.- -|+..+||+|.-...+..|.+-.+...
T Consensus 50 SpGPg~p~~~~~~~~~~~~~~-~~iPILGIClG~Q---~ia~~~Gg~v~~~~~~~hG~~~~i~~~ 110 (195)
T PRK07649 50 SPGPCSPNEAGISMEVIRYFA-GKIPIFGVCLGHQ---SIAQVFGGEVVRAERLMHGKTSLMHHD 110 (195)
T ss_pred CCCCCCHHHCCCCHHHHHHHC-CCCCEEEECHHHH---HHHHHCCCCEEECCCEEECEEEEEEEC
T ss_conf 899999578476146799752-8997843029999---999873972833796076406579988
No 283
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=63.53 E-value=8.5 Score=16.49 Aligned_cols=92 Identities=12% Similarity=0.158 Sum_probs=51.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHHHCCCCCEE
Q ss_conf 5699976988999999999998898999989-9899989998659995489985878898-8899999999868998299
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAF-SGTDALKVMEKLQGRVDIVISDVVMPEM-DGPTLLRELRKTYPSLKFI 759 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~-~g~eal~~~~~~~~~~dlil~D~~mp~m-~G~~~~~~ir~~~~~~~ii 759 (803)
..+.++|.|+.. .+.+++.|+.|..-. +=.+-|+.+.-. .-.+++.- +|+. .-..+++.+|+.+|++||+
T Consensus 423 i~~vviD~d~~~----V~~~r~~G~~v~yGDat~~~vL~~AGi~--~Ar~vVia--idd~~~~~~iv~~~r~~~P~l~Ii 494 (615)
T PRK03562 423 VKMVVLDHDPDH----IETLRKFGMKVFYGDATRMDLLESAGAA--KAEVLINA--IDDPQTNLQLTELVKEHFPHLQII 494 (615)
T ss_pred CCEEEEECCHHH----HHHHHHCCCEEEEECCCCHHHHHHCCCC--CCCEEEEE--ECCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 987999799999----9999967990897689999999867914--06889999--498999999999999758998699
Q ss_pred EEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 990678589987676057980750
Q gi|254780450|r 760 FISGYAEDAFSKNLPKDAKFSFLS 783 (803)
Q Consensus 760 ~~t~~~~~~~~~~~~~~~~~~~l~ 783 (803)
+=+-+-. ....+.+.+...+++
T Consensus 495 aRard~~--~~~~L~~~Ga~~vv~ 516 (615)
T PRK03562 495 ARARDVD--HYIRLRQAGVEKPER 516 (615)
T ss_pred EEECCHH--HHHHHHHCCCCEEEC
T ss_conf 9839778--899999789998966
No 284
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=63.39 E-value=8.6 Score=16.47 Aligned_cols=16 Identities=0% Similarity=0.027 Sum_probs=6.6
Q ss_pred HHHHHCCCEEEEECCC
Q ss_conf 9985259619999299
Q gi|254780450|r 164 DYLDHSPVGFMSADHQ 179 (803)
Q Consensus 164 ~~le~a~~gi~~~D~~ 179 (803)
.+++--...++.+-..
T Consensus 79 ~~l~G~n~ti~aYGqT 94 (322)
T cd01367 79 HVFEGGVATCFAYGQT 94 (322)
T ss_pred HHHCCCCEEEEEECCC
T ss_conf 9868987489994268
No 285
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=63.37 E-value=8.6 Score=16.47 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCEEEEECCCHHHH---HHHHHHHHHCCCEEEEEC
Q ss_conf 75699976988999---999999998898999989
Q gi|254780450|r 681 SAIVLLVEDEDSVR---RGSKRMLETRGYTVHEAF 712 (803)
Q Consensus 681 ~~~iLvvdD~~~~~---~~~~~~L~~~g~~v~~a~ 712 (803)
+.|||||||=-+.. ....++++++|.+|..+.
T Consensus 114 g~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~a 148 (175)
T TIGR01090 114 GQRVLIVDDLLATGGTAEATLELIKKLGGEVVEAA 148 (175)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 89089983220126789999999998596168745
No 286
>pfam07364 DUF1485 Protein of unknown function (DUF1485). This family consists of several hypothetical bacterial proteins of around 300 residues in length. Members of this family all appear to be in the Phylum Proteobacteria. The function of this family is unknown.
Probab=63.04 E-value=8.7 Score=16.43 Aligned_cols=12 Identities=8% Similarity=-0.000 Sum_probs=5.9
Q ss_pred EECCHHHHHHHH
Q ss_conf 989989998999
Q gi|254780450|r 710 EAFSGTDALKVM 721 (803)
Q Consensus 710 ~a~~g~eal~~~ 721 (803)
...+..||++..
T Consensus 279 ~~~~~~eAl~~A 290 (292)
T pfam07364 279 PFLPLDEAVDRA 290 (292)
T ss_pred CCCCHHHHHHHH
T ss_conf 999989999997
No 287
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.86 E-value=8.8 Score=16.41 Aligned_cols=85 Identities=15% Similarity=0.247 Sum_probs=51.8
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEE-
Q ss_conf 898999989989998999865999548998587889-888999999998689982999906785899876760579807-
Q gi|254780450|r 704 RGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSF- 781 (803)
Q Consensus 704 ~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~- 781 (803)
.|+.-....+..++++++.+... -++++|+.=-| |+|++ .+++..++.|+|+.-|-+.-.+-..+...+..+.
T Consensus 135 ~gw~~~~~~~~~~~~~~~~~~~~--~ii~tdI~~dGt~~G~~---~~~~~~~~~~iiasGGv~s~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 135 KGWLEESSIKVEDAYKMLRNYVN--RFIYTSIERDGTLTGIE---NIERFWGDEEFIYAGGVSSIEDVKKLAEIGFSGAI 209 (228)
T ss_pred CCCEECCCCCHHHHHHHHHHHCC--CEEEEEECCCCCCCCHH---HHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 68488899889999999986384--53763126543003889---99986168968987898999999999967998999
Q ss_pred -----EECCCCHHHHHH
Q ss_conf -----507979999999
Q gi|254780450|r 782 -----LSKPFSLKQLAT 793 (803)
Q Consensus 782 -----l~KP~~~~~L~~ 793 (803)
...=++++++.+
T Consensus 210 vG~Al~~g~i~l~e~~~ 226 (228)
T PRK04128 210 IGKALYEGRISLEELLE 226 (228)
T ss_pred EEHHHHCCCCCHHHHHH
T ss_conf 98538569978999943
No 288
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=62.68 E-value=8.8 Score=16.39 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=8.7
Q ss_pred EEEECCCHHHHHHHHHHHH
Q ss_conf 9997698899999999999
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLE 702 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~ 702 (803)
|-+||=|+.+.++.++.|.
T Consensus 103 i~~VEID~~Vi~~ar~~l~ 121 (282)
T COG0421 103 ITMVEIDPAVIELARKYLP 121 (282)
T ss_pred EEEEECCHHHHHHHHHHCC
T ss_conf 7999708899999998666
No 289
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=62.29 E-value=9 Score=16.34 Aligned_cols=52 Identities=23% Similarity=0.189 Sum_probs=37.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 699976988999999999998898---99998998999899986599954899858
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGY---TVHEAFSGTDALKVMEKLQGRVDIVISDV 735 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~---~v~~a~~g~eal~~~~~~~~~~dlil~D~ 735 (803)
+++.||-|.....++.+-++.+|+ ......|...+|..+... .+||+|.+|=
T Consensus 68 ~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 68 RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCC-CCCCEEEECC
T ss_conf 699996598999999999998487612599840089998722778-8512899689
No 290
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.95 E-value=9.1 Score=16.30 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=53.9
Q ss_pred EEEECCC--HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 9997698--899999999999889899998-------9989998999865999548998587889888999999998689
Q gi|254780450|r 684 VLLVEDE--DSVRRGSKRMLETRGYTVHEA-------FSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYP 754 (803)
Q Consensus 684 iLvvdD~--~~~~~~~~~~L~~~g~~v~~a-------~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~ 754 (803)
||..+|+ ......+...++..|.+|... .|=...+..+.+. .+|+|++- ..+-++..+++++|+..-
T Consensus 142 il~~~~~yG~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~ki~~~--~pD~v~~~--~~~~~~~~~~kq~~~~G~ 217 (312)
T cd06346 142 TTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAG--GPDALVVI--GYPETGSGILRSAYEQGL 217 (312)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHC--CCCEEEEE--CCCHHHHHHHHHHHHCCC
T ss_conf 99957726699999999999987998999996699984559999999866--99999994--673479999999997599
Q ss_pred CCCEEEEECCCHHHHH
Q ss_conf 9829999067858998
Q gi|254780450|r 755 SLKFIFISGYAEDAFS 770 (803)
Q Consensus 755 ~~~ii~~t~~~~~~~~ 770 (803)
..|++..++...+...
T Consensus 218 ~~~~~~~~g~~~~~~~ 233 (312)
T cd06346 218 FDKFLLTDGMKSDSFL 233 (312)
T ss_pred CCCEEEECCCCCHHHH
T ss_conf 9977964455687899
No 291
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=61.94 E-value=9.1 Score=16.30 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=38.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHC--CCCCCEEEEECC
Q ss_conf 6999769889999999999988989--99-989989998999865--999548998587
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYT--VH-EAFSGTDALKVMEKL--QGRVDIVISDVV 736 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~--v~-~a~~g~eal~~~~~~--~~~~dlil~D~~ 736 (803)
+|.-+|=|+......++.++..|+. +. ...++.+.|+.+.+. .+.||+|++|-.
T Consensus 71 ~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~fD~vFiDad 129 (204)
T pfam01596 71 KITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGEFDFAFVDAD 129 (204)
T ss_pred EEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 89999804899999999999779874479998749999999984477776438998188
No 292
>TIGR00336 pyrE orotate phosphoribosyltransferase; InterPro: IPR004467 Orotate phosphoribosyl transferase (OPRTase) is involved in the biosynthesis of pyrimidine nucleotides. Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and orotate are utilised to form pyrophosphate and orotidine 5 -monophosphate (OMP) in the presence of divalent cations, preferably Mg2+. In a number of eukaryotes, this protein is fused to a domain that catalyses the reaction (4.1.1.23 from EC). The combined activity of 2.4.2.10 from EC and 4.1.1.23 from EC is termed uridine 5 -monophosphate synthase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.; GO: 0004588 orotate phosphoribosyltransferase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=61.32 E-value=9.3 Score=16.23 Aligned_cols=65 Identities=26% Similarity=0.257 Sum_probs=36.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCC--CEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 8756999769889999999999988989999899899989998659995--48998587889888999999998689982
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRV--DIVISDVVMPEMDGPTLLRELRKTYPSLK 757 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~--dlil~D~~mp~m~G~~~~~~ir~~~~~~~ 757 (803)
.+.+|+||||=-. +=.+-.+|.+.++++++.. =++++|.+-|+-.=..+.+...+.+ ++|
T Consensus 116 eG~kvvvveDV~T-----------------tG~s~~~A~~~i~~ag~~V~~v~~~vDR~e~~~~E~~A~~~f~~~y-~~~ 177 (187)
T TIGR00336 116 EGDKVVVVEDVIT-----------------TGGSILEAVEAIQEAGGEVAGVIVIVDRQERGKGELSAGQEFEKEY-GLP 177 (187)
T ss_pred CCCEEEEEECCCC-----------------HHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHH-CCE
T ss_conf 8963899951434-----------------2479999999998618889999999826724331013345546552-864
Q ss_pred EEEEE
Q ss_conf 99990
Q gi|254780450|r 758 FIFIS 762 (803)
Q Consensus 758 ii~~t 762 (803)
++.+.
T Consensus 178 ~~sl~ 182 (187)
T TIGR00336 178 LISLI 182 (187)
T ss_pred EEEEE
T ss_conf 43231
No 293
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=61.22 E-value=9.3 Score=16.21 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=31.4
Q ss_pred EEECCCCCCHHHHHH--CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 997886688445420--23222210135776530388999998516754999961889429999943
Q gi|254780450|r 586 VEDTGIGMSPDIMEK--IFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 586 V~D~G~GI~~~~~~~--iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
|-=.|||=|.+.-.. +-..|. .+-.=-|--||. +-|...+||++.-...+..|.+-.+...
T Consensus 48 vLSpGPG~P~~~~~~~~~i~~~~-~~iPILGIClG~---Q~ia~~~Gg~v~~~~~~~hG~~~~i~~~ 110 (191)
T PRK06774 48 VISPGPCTPNEAGISLAVIRHFA-DKLPILGVCLGH---QALGQAFGARVVRARQVMHGKTSAICHS 110 (191)
T ss_pred EECCCCCCHHHHCCHHHHHHHHC-CCCCEEEEHHHH---HHHHHHCCCEEEECCCCEECEEEEEEEC
T ss_conf 99999989679073068999744-699788616879---9986560984928997475703689989
No 294
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=60.58 E-value=9.6 Score=16.14 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=30.8
Q ss_pred ECCCCCCHHHHHH--CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 7886688445420--2322221013577653038899999851675499996188942999994
Q gi|254780450|r 588 DTGIGMSPDIMEK--IFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 588 D~G~GI~~~~~~~--iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
=.|||=|.+.-.. +...|. .+-.=-|--||.- -|++.+||+|.--+.+-.|.+-.+..
T Consensus 50 SpGPg~P~~~~~~~~~i~~~~-~~iPiLGIClG~Q---~ia~~~Gg~v~~~~~~~hG~~~~i~~ 109 (187)
T PRK08007 50 SPGPCTPDEAGISLDVIRHYA-GRLPILGVCLGHQ---AMAQAFGGKVVRAAKVMHGKTSPITH 109 (187)
T ss_pred CCCCCCHHHCCCCHHHHHHHC-CCCCEEEECHHHH---HHHHHCCCEEEECCCCCCCCCEEEEE
T ss_conf 999999589084046899753-8998899879999---99998098073478320152069998
No 295
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=60.45 E-value=9.6 Score=16.12 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=6.1
Q ss_pred EEEEEECEEEEEECCC
Q ss_conf 9998502069983155
Q gi|254780450|r 301 IASIDKKGRILRTNAH 316 (803)
Q Consensus 301 I~~~d~~g~i~~~N~a 316 (803)
+|...++|-+.++|..
T Consensus 258 ~~~~~~~~~~~~~~~~ 273 (317)
T PRK13943 258 FYYAGPNGVVEFLDDR 273 (317)
T ss_pred EEEECCCCEEEEECCE
T ss_conf 7876588169996683
No 296
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.95 E-value=9.8 Score=16.07 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 256641589999
Q gi|254780450|r 428 AHDFNNVLTAIL 439 (803)
Q Consensus 428 sHelr~pL~~I~ 439 (803)
.|.+.|-|.++.
T Consensus 284 ~HN~~NalAAia 295 (457)
T PRK01390 284 RHNAQNAAAAVA 295 (457)
T ss_pred HHHHHHHHHHHH
T ss_conf 426999999999
No 297
>pfam07310 PAS_5 PAS domain. This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long. This region is is distantly similar to other PAS domains.
Probab=59.63 E-value=9.9 Score=16.03 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=43.7
Q ss_pred CEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEE-EEEEEEEEECCEEEEEEEEEEEEECC
Q ss_conf 68976467986429996780456321888088204899999986200267148-88999980489799999955676538
Q gi|254780450|r 181 KILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITT-LDLDLRRIDNGHGIPVKIVHHILASC 259 (803)
Q Consensus 181 ~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~g~~~~v~~~~~~~~~~ 259 (803)
++-.+-...++++|++.. ++.+.++..|+....+.............. ..... ...+|.....+...-|+.+.
T Consensus 52 r~RlaGt~l~~~~G~d~~-----G~~~~~l~~~~~r~~~~~~l~~v~~~~~p~~~~~~~-~~~~g~~~~~e~LlLPL~~d 125 (137)
T pfam07310 52 PFRLAGTRLCALFGRELR-----GIPFSALWTEASRREIARVLDVVFDRTLPVLAGVDA-EARNGRSLHFELLLLPLATR 125 (137)
T ss_pred EEEEECHHHHHHHCCCCC-----CCCHHHHHCHHHHHHHHHHHHHHHCCCCEEEEEEEE-ECCCCCCEEEEEEECCCCCC
T ss_conf 999817889998299888-----978899619677999999999997589439999778-63898701543555257899
Q ss_pred CCCEEEEEE
Q ss_conf 885547999
Q gi|254780450|r 260 DGKPGESRT 268 (803)
Q Consensus 260 ~G~~~~~~~ 268 (803)
+|.+..+.+
T Consensus 126 ~g~vdriLG 134 (137)
T pfam07310 126 SGTPDRFLG 134 (137)
T ss_pred CCCHHHHHH
T ss_conf 997223331
No 298
>pfam08446 PAS_2 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.
Probab=58.69 E-value=10 Score=15.92 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=20.3
Q ss_pred CCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHH
Q ss_conf 999689764679864299967804563218880882048999999
Q gi|254780450|r 178 HQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAI 222 (803)
Q Consensus 178 ~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 222 (803)
++++|+.++....+++|.+.++++++ .+.+++.++....+...
T Consensus 24 ~~~~I~qaS~N~~~~lG~~~~~llG~--~l~~ll~~~~~~~l~~~ 66 (107)
T pfam08446 24 PDFRVLQASENAAEMLGLVAQQLLGT--DLRTLLTPSSAAALRKA 66 (107)
T ss_pred CCCEEEEECCCHHHHHCCCHHHHCCC--CHHHHCCHHHHHHHHHH
T ss_conf 99879998558888858595898599--68998698899999998
No 299
>PRK05637 anthranilate synthase component II; Provisional
Probab=58.57 E-value=10 Score=15.91 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=34.0
Q ss_pred EEECCCCCCHHH--HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 997886688445--42023222210135776530388999998516754999961889429999943
Q gi|254780450|r 586 VEDTGIGMSPDI--MEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLP 650 (803)
Q Consensus 586 V~D~G~GI~~~~--~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~lP 650 (803)
|-=-|||-|.+. ...+++.|...... -|-=||. +.|++..||+|.-. .+=.|.+..+..-
T Consensus 49 vlSPGPg~P~d~g~~~~~~~~~~~~iPI-LGICLGh---Q~i~~~~Gg~v~~~-~~~HG~~s~i~~~ 110 (208)
T PRK05637 49 CLSPGPGYPADAGNMMALIERTLGQIPL-LGICLGY---QALIEYHGGKVEPC-GPVHGTTDNMILT 110 (208)
T ss_pred EECCCCCCHHHCCCHHHHHHHHHCCCCE-EEHHHHH---HHHHHHCCCEEECC-CCCCCEEEEEEEC
T ss_conf 9999999957775749999997356982-2114778---99999709788306-7765506678987
No 300
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=58.13 E-value=10 Score=15.86 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=55.9
Q ss_pred EEEECCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 99976988---9999999999988989999-------8998999899986599954899858788988899999999868
Q gi|254780450|r 684 VLLVEDED---SVRRGSKRMLETRGYTVHE-------AFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTY 753 (803)
Q Consensus 684 iLvvdD~~---~~~~~~~~~L~~~g~~v~~-------a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~ 753 (803)
.++.+|++ .....+.+.++..|.++.. ..|-...+..+.+. .+|.|++-. .+-++..+++++++..
T Consensus 139 aiv~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~i~~l~~~--~pd~v~~~~--~~~~~~~~~~~~~~~g 214 (298)
T cd06268 139 AIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAA--GPDAVFLAG--YGGDAALFLKQAREAG 214 (298)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHC--CCCEEEECC--CCHHHHHHHHHHHHCC
T ss_conf 997787346799999999989974998999996487657779999999976--999999917--6267899999999829
Q ss_pred CCCCEEEEECCCHHHHH
Q ss_conf 99829999067858998
Q gi|254780450|r 754 PSLKFIFISGYAEDAFS 770 (803)
Q Consensus 754 ~~~~ii~~t~~~~~~~~ 770 (803)
.+.+++..+........
T Consensus 215 ~~~~~~~~~~~~~~~~~ 231 (298)
T cd06268 215 LKVPIVGGDGAAAPALL 231 (298)
T ss_pred CCCEEEEECCCCCHHHH
T ss_conf 99739995677778999
No 301
>CHL00101 trpG anthranilate synthase component 2
Probab=58.03 E-value=11 Score=15.85 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 653038899999851675499996188942999994
Q gi|254780450|r 614 GTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 614 GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
|--||.- -|+..+||++.--..+..|-+..+..
T Consensus 77 GIClG~Q---~ia~~~Gg~v~~~~~~~~G~~~~i~~ 109 (190)
T CHL00101 77 GVCLGHQ---SIGYVYGGKIIKASKPMHGKTSLIYH 109 (190)
T ss_pred EECHHHH---HHHHHCCCEEEECCCEEECCEEEEEE
T ss_conf 9739889---99887586499788204362479997
No 302
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative; InterPro: IPR010088 This entry represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulphate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation..
Probab=57.86 E-value=11 Score=15.83 Aligned_cols=75 Identities=17% Similarity=0.063 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCC--CCCH---HHHHHHHHHH--CCCCCEEEEEC
Q ss_conf 899999999999889899998998999899986599954899858788--9888---9999999986--89982999906
Q gi|254780450|r 691 DSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMP--EMDG---PTLLRELRKT--YPSLKFIFISG 763 (803)
Q Consensus 691 ~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp--~m~G---~~~~~~ir~~--~~~~~ii~~t~ 763 (803)
..++..+++.|+..||+|+-...=...|.-..=+|..|||+++=---- |-+= -+.+.+|-.+ .|.=-+|+=||
T Consensus 15 ~eVA~~I~~~l~~~G~eVDW~~~r~~~La~~pldPe~ydL~~LGtwT~~~GrTP~e~KdFiaEl~~liGKP~nvaiFGTG 94 (145)
T TIGR01754 15 KEVADIIRDILEKDGHEVDWVEFRISTLADAPLDPEDYDLYLLGTWTVERGRTPDEMKDFIAELAVLIGKPKNVAIFGTG 94 (145)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 89999999999847977676640004642467899863157743122357899666899999999983699824886588
Q ss_pred CC
Q ss_conf 78
Q gi|254780450|r 764 YA 765 (803)
Q Consensus 764 ~~ 765 (803)
-+
T Consensus 95 eT 96 (145)
T TIGR01754 95 ET 96 (145)
T ss_pred CC
T ss_conf 75
No 303
>PRK13116 consensus
Probab=57.83 E-value=11 Score=15.82 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=8.2
Q ss_pred HHHHHHCCCCEEEEEECC
Q ss_conf 999985167549999618
Q gi|254780450|r 622 VYGIIRQSGGYILPESEV 639 (803)
Q Consensus 622 ~~~iv~~~gG~i~v~S~~ 639 (803)
.+.|++...|.|.+-|..
T Consensus 163 i~~I~~~s~GFiY~VS~~ 180 (278)
T PRK13116 163 LEGVSAASKGYIYAISRD 180 (278)
T ss_pred HHHHHHHCCCEEEEEECC
T ss_conf 999997189739998635
No 304
>PRK00654 glgA glycogen synthase; Provisional
Probab=57.68 E-value=11 Score=15.81 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=11.7
Q ss_pred CEEEECCCCHHHHHHHHHHHHC
Q ss_conf 8075079799999999999851
Q gi|254780450|r 779 FSFLSKPFSLKQLATSVHELLQ 800 (803)
Q Consensus 779 ~~~l~KP~~~~~L~~~i~~~L~ 800 (803)
.+|+-+|++...|..+|+++|+
T Consensus 417 tGf~f~~~~~~~l~~ai~~al~ 438 (476)
T PRK00654 417 TGFVFDDFNAEDLLTALRRALE 438 (476)
T ss_pred CEEEECCCCHHHHHHHHHHHHH
T ss_conf 3487379999999999999998
No 305
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.07 E-value=11 Score=15.74 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHCCCE--E-EEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHH
Q ss_conf 999999999988989--9-9989989998999865999548998587889888999999998689982999906785899
Q gi|254780450|r 693 VRRGSKRMLETRGYT--V-HEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAF 769 (803)
Q Consensus 693 ~~~~~~~~L~~~g~~--v-~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~ 769 (803)
....+...-+...+. + +++.|-.||.+.+.. ..|.|++|=.=|++ =.++.+.+++.+|++ .+..||.-....
T Consensus 167 ~~~ai~~~r~~~~~~~kIeVEv~~l~ea~~a~~~---gaDiI~LDn~~~e~-~k~~v~~~~~~~~~v-~ieaSGGI~~~n 241 (272)
T PRK05848 167 LKSFIQHARKNIPFTAKIEIECESLEEAKEAMNA---GADIVMCDNMSVEE-TKEIVAYRNANYPHV-LLEASGNISLET 241 (272)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHC---CCCEEEECCCCHHH-HHHHHHHHHCCCCCE-EEEEECCCCHHH
T ss_conf 9999999998589984699974999999999845---99989958999999-999999874648877-999979998999
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 87676057980750
Q gi|254780450|r 770 SKNLPKDAKFSFLS 783 (803)
Q Consensus 770 ~~~~~~~~~~~~l~ 783 (803)
-+.+...+. ++++
T Consensus 242 i~~yA~~Gv-D~Is 254 (272)
T PRK05848 242 INAYAKSGV-DAIS 254 (272)
T ss_pred HHHHHHCCC-CEEE
T ss_conf 999996599-9998
No 306
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=56.71 E-value=11 Score=15.70 Aligned_cols=73 Identities=18% Similarity=0.090 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999999999889899998-------99899989998659995489985878898889999999986899829999067
Q gi|254780450|r 692 SVRRGSKRMLETRGYTVHEA-------FSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGY 764 (803)
Q Consensus 692 ~~~~~~~~~L~~~g~~v~~a-------~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~ 764 (803)
.....++..++..|.+|+.. .|=...+..+++. .+|+|++- ..+-++..+++++|+...+.|++...+.
T Consensus 153 ~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~~--~pD~V~~~--~~~~~~~~~~~q~~~~G~~~~~~g~~~~ 228 (347)
T cd06335 153 SNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAA--GADAIIIV--GNGPEGAQIANGMAKLGWKVPIISHWGL 228 (347)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHC--CCCEEEEE--CCCHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 9999999999865986757884079983489999999866--99999994--7761799999999971999767941477
Q ss_pred CHHH
Q ss_conf 8589
Q gi|254780450|r 765 AEDA 768 (803)
Q Consensus 765 ~~~~ 768 (803)
+...
T Consensus 229 ~~~~ 232 (347)
T cd06335 229 SGGN 232 (347)
T ss_pred CCHH
T ss_conf 7589
No 307
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=56.49 E-value=11 Score=15.67 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=25.5
Q ss_pred ECCCCCCHHHH--HHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEE
Q ss_conf 78866884454--2023222210135776530388999998516754999961889429999
Q gi|254780450|r 588 DTGIGMSPDIM--EKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRI 647 (803)
Q Consensus 588 D~G~GI~~~~~--~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i 647 (803)
=.|||=|.+.- ..+-+.|.. +..==|--+|+-+ |.+..||++.--..+-.|..-.+
T Consensus 49 S~GPg~p~~~~~~~~~~~~l~~-~iPiLGIC~G~Ql---l~~~~Gg~v~~~~~~~~G~~~~i 106 (184)
T cd01743 49 SPGPGHPEDAGISLEIIRALAG-KVPILGVCLGHQA---IAEAFGGKVVRAPEPMHGKTSEI 106 (184)
T ss_pred CCCCCCHHHCCCHHHHHHHHHC-CCCEEEECHHHHH---HHHHCCCEEEECCCCEECEEEEE
T ss_conf 9999892561460999999846-9989998099999---99983984874575140545899
No 308
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=56.23 E-value=11 Score=15.64 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8899999999868998299990
Q gi|254780450|r 741 DGPTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 741 ~G~~~~~~ir~~~~~~~ii~~t 762 (803)
++..+++++++..-+.|++..+
T Consensus 204 ~~~~~~~q~~~~G~~~~~~~~~ 225 (344)
T cd06348 204 DGGNLVRQLRELGYNGLIVGGN 225 (344)
T ss_pred HHHHHHHHHHHCCCCCEEEEEC
T ss_conf 5999999999769997099866
No 309
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=55.88 E-value=7.2 Score=17.01 Aligned_cols=46 Identities=33% Similarity=0.420 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCC
Q ss_conf 9999999985259619999299968976467986429996780456
Q gi|254780450|r 158 ELQNAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSK 203 (803)
Q Consensus 158 ~~~~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~ 203 (803)
..+++.+++.|..+|++..|.+|++..+|.....-+|.+...-.+.
T Consensus 195 rrqrldnllqhlrdGvvaldaqGrveainqrlatalGid~~~a~Gq 240 (658)
T TIGR02329 195 RRQRLDNLLQHLRDGVVALDAQGRVEAINQRLATALGIDLRQAAGQ 240 (658)
T ss_pred HHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6788999999863121432144327899888888852154523788
No 310
>PRK13119 consensus
Probab=55.18 E-value=12 Score=15.53 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=9.5
Q ss_pred HHHHHHCCCCEEEEEECCC
Q ss_conf 9999851675499996188
Q gi|254780450|r 622 VYGIIRQSGGYILPESEVG 640 (803)
Q Consensus 622 ~~~iv~~~gG~i~v~S~~g 640 (803)
.+.|++...|.|.+-|..|
T Consensus 161 i~~i~~~a~gFiY~vs~~G 179 (261)
T PRK13119 161 IKTIAELAGGFVYYVSLKG 179 (261)
T ss_pred HHHHHHHCCCEEEEEECCC
T ss_conf 9999972898199973666
No 311
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=55.12 E-value=12 Score=15.52 Aligned_cols=12 Identities=17% Similarity=-0.075 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999987422
Q gi|254780450|r 533 FEQVLVNLCVNA 544 (803)
Q Consensus 533 l~qvl~NLl~NA 544 (803)
..+-...|+..|
T Consensus 311 ~~rdy~~l~~~~ 322 (393)
T COG1092 311 AQRDYKDLNDLA 322 (393)
T ss_pred HHHHHHHHHHHH
T ss_conf 898999999999
No 312
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323 These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=54.81 E-value=11 Score=15.58 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=11.8
Q ss_pred EEEEEEECCCCCCHH
Q ss_conf 999999788668844
Q gi|254780450|r 582 VLVEVEDTGIGMSPD 596 (803)
Q Consensus 582 v~i~V~D~G~GI~~~ 596 (803)
.++.|-||=+||.+-
T Consensus 175 a~vKVdDt~pgi~EG 189 (199)
T TIGR01422 175 ACVKVDDTLPGIKEG 189 (199)
T ss_pred CEEECCCCCCCHHHC
T ss_conf 035326776421202
No 313
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=54.66 E-value=12 Score=15.47 Aligned_cols=72 Identities=19% Similarity=0.187 Sum_probs=45.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 999769889999999999988989--9-9989989998999865999548998587889888999999998689982999
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYT--V-HEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~--v-~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
|--||-++......+..|+..|+. | ....||.+... ...+||.|+..-..|.+- ..+..++ .++-+.|+
T Consensus 100 V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~----~~apfD~Iiv~aa~~~iP-~~l~~QL---~~gGrLV~ 171 (205)
T PRK13944 100 VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE----KHAPFDAIIVTAAASTIP-SALVRQL---KDGGVLVI 171 (205)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCCCCCEEEEEEECCCCC-HHHHHHC---CCCCEEEE
T ss_conf 799953699999999999985986330679765565774----349804899985077689-9999854---87979999
Q ss_pred EEC
Q ss_conf 906
Q gi|254780450|r 761 ISG 763 (803)
Q Consensus 761 ~t~ 763 (803)
--|
T Consensus 172 Pvg 174 (205)
T PRK13944 172 PVE 174 (205)
T ss_pred EEC
T ss_conf 987
No 314
>PRK07048 serine/threonine dehydratase; Validated
Probab=54.54 E-value=12 Score=15.46 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=20.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH
Q ss_conf 999769889999999999988989999899899989998
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVME 722 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~ 722 (803)
++.|+|++ +...++.+++..|.-|. .+|.-++..+.
T Consensus 255 ~v~V~d~e-i~~a~~~L~~~~gl~vE--psgA~~~Aall 290 (321)
T PRK07048 255 IVTVSDAE-LVDAMRFFAERMKIVVE--PTGCLGAAAAL 290 (321)
T ss_pred CEEECHHH-HHHHHHHHHHHCCEEEC--HHHHHHHHHHH
T ss_conf 17788999-99999999997591881--76999999999
No 315
>PRK04457 spermidine synthase; Provisional
Probab=54.50 E-value=12 Score=15.46 Aligned_cols=17 Identities=18% Similarity=-0.007 Sum_probs=7.2
Q ss_pred EEEECCCHHHHHHHHHH
Q ss_conf 99976988999999999
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRM 700 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~ 700 (803)
|-+||=||.+-.+.+++
T Consensus 93 i~~VEIdp~Vi~vAr~~ 109 (262)
T PRK04457 93 QTAVEINPQVIAVARNH 109 (262)
T ss_pred EEEEECCHHHHHHHHHH
T ss_conf 89998788999999986
No 316
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=54.31 E-value=12 Score=15.44 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=43.5
Q ss_pred CCHHH-HHHHHHHHHHCCCEEEEEC---CHHHHHHHHHHCCCCCCEEEEECCC-CCCCH-HHHHHHHHHHCCCCCEEEEE
Q ss_conf 98899-9999999998898999989---9899989998659995489985878-89888-99999999868998299990
Q gi|254780450|r 689 DEDSV-RRGSKRMLETRGYTVHEAF---SGTDALKVMEKLQGRVDIVISDVVM-PEMDG-PTLLRELRKTYPSLKFIFIS 762 (803)
Q Consensus 689 D~~~~-~~~~~~~L~~~g~~v~~a~---~g~eal~~~~~~~~~~dlil~D~~m-p~m~G-~~~~~~ir~~~~~~~ii~~t 762 (803)
|-+++ ..++..+|+..||+|+--. ....-++.+.++ .+|+|-+--.| +-|.. -++++.+++...++||+ +-
T Consensus 99 D~HdiGkniv~~~l~~~Gf~V~dLG~dv~~e~~v~~~~~~--~~divglSallTtTm~~mk~vi~~l~~~g~~vkv~-vG 175 (213)
T cd02069 99 DVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEH--KADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLL-IG 175 (213)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE-EC
T ss_conf 6341218999999997896688505899899999999974--99999983230304999999999999749981799-71
Q ss_pred CC
Q ss_conf 67
Q gi|254780450|r 763 GY 764 (803)
Q Consensus 763 ~~ 764 (803)
|-
T Consensus 176 Ga 177 (213)
T cd02069 176 GA 177 (213)
T ss_pred CC
T ss_conf 63
No 317
>KOG1985 consensus
Probab=54.19 E-value=12 Score=15.42 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=24.8
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHCC------CEEEEECCCCCEEEEHHHH
Q ss_conf 97833889999999999999999985259------6199992999689764679
Q gi|254780450|r 142 ITDITSERKDQEKFFRELQNAIDYLDHSP------VGFMSADHQGKILYINATL 189 (803)
Q Consensus 142 i~DIT~~k~~ee~l~~~~~~~~~~le~a~------~gi~~~D~~g~i~~~N~~~ 189 (803)
+.||+......-.+.-..+.+...+|..| +|++.+|..-.+-.++..+
T Consensus 300 liDVS~~a~ksG~L~~~~~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~ 353 (887)
T KOG1985 300 LIDVSISAIKSGYLETVARSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDL 353 (887)
T ss_pred EEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEEEEEECCCCC
T ss_conf 998246765530999999999976640799976358999950435677437876
No 318
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=53.17 E-value=13 Score=15.31 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=11.6
Q ss_pred HHHHHHHCCCCEEEEEECCC
Q ss_conf 99999851675499996188
Q gi|254780450|r 621 VVYGIIRQSGGYILPESEVG 640 (803)
Q Consensus 621 i~~~iv~~~gG~i~v~S~~g 640 (803)
-.+.|++.-.|.|.+-|..|
T Consensus 154 Ri~~i~~~s~gFiY~vs~~G 173 (258)
T pfam00290 154 RLKTISEAASGFVYLVSRAG 173 (258)
T ss_pred HHHHHHHHCCCEEEEEECCC
T ss_conf 99999960898089985344
No 319
>PRK13114 consensus
Probab=53.15 E-value=13 Score=15.31 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=6.3
Q ss_pred HHHHHCCCCEEEEEEC
Q ss_conf 9998516754999961
Q gi|254780450|r 623 YGIIRQSGGYILPESE 638 (803)
Q Consensus 623 ~~iv~~~gG~i~v~S~ 638 (803)
+.|++...|.|..-|.
T Consensus 160 ~~i~~~a~gFiY~vs~ 175 (266)
T PRK13114 160 PAVLEGASGFLYYVSV 175 (266)
T ss_pred HHHHHHCCCCEEEEEC
T ss_conf 9999738995899844
No 320
>PRK04759 consensus
Probab=52.76 E-value=13 Score=15.27 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 716999999998742
Q gi|254780450|r 529 DLSQFEQVLVNLCVN 543 (803)
Q Consensus 529 D~~~l~qvl~NLl~N 543 (803)
++..+.+.|.+++.+
T Consensus 106 ~~~~~~~~l~~il~g 120 (294)
T PRK04759 106 NPEDFQERLQAVLDG 120 (294)
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 888999999999759
No 321
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=52.49 E-value=13 Score=15.24 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=19.3
Q ss_pred CCCEEEEECCC-C-------CEEEEHHHHHHHCCCCHHHHCCCCCCH
Q ss_conf 59619999299-9-------689764679864299967804563218
Q gi|254780450|r 169 SPVGFMSADHQ-G-------KILYINATLAEWIGIDLTTFTSKSISI 207 (803)
Q Consensus 169 a~~gi~~~D~~-g-------~i~~~N~~~~~llG~~~~e~~~~~~~~ 207 (803)
...-++++|.. - .+.-+||.... -+|+..++.|-+..|
T Consensus 137 ~G~dVIVtDHHC~~~~~lP~a~AivNP~~~~-~~yP~k~LaGvGVaF 182 (705)
T TIGR00644 137 LGIDVIVTDHHCLPPETLPEAAAIVNPKRPD-CNYPFKELAGVGVAF 182 (705)
T ss_pred CCCEEEEECCCCCCCCCCCCCCEEEECCCCC-CCCCCHHHHHHHHHH
T ss_conf 6981999725679848998650577167588-998831467889999
No 322
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=51.91 E-value=13 Score=15.18 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf 998999899986599954899858788988899
Q gi|254780450|r 712 FSGTDALKVMEKLQGRVDIVISDVVMPEMDGPT 744 (803)
Q Consensus 712 ~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~ 744 (803)
+|-++-++.+...++ ..++=+|+.||+.+|..
T Consensus 99 tdiqDTId~In~ig~-A~vvDl~L~Mp~~e~~S 130 (170)
T COG2061 99 TDIQDTIDRINSIGG-AEVVDLSLSMPGIEGES 130 (170)
T ss_pred CCHHHHHHHHHCCCC-EEEEEEEEECCCCCCCC
T ss_conf 767877887633487-79999886547998775
No 323
>PRK13112 consensus
Probab=51.90 E-value=13 Score=15.18 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=6.4
Q ss_pred HHHHHCCCCEEEEEEC
Q ss_conf 9998516754999961
Q gi|254780450|r 623 YGIIRQSGGYILPESE 638 (803)
Q Consensus 623 ~~iv~~~gG~i~v~S~ 638 (803)
+.|++...|.|.+-|.
T Consensus 165 ~~i~~~s~GFiY~Vs~ 180 (279)
T PRK13112 165 PKVLANTSGFVYYVSM 180 (279)
T ss_pred HHHHHCCCCCEEEEEC
T ss_conf 9998527880899835
No 324
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=51.42 E-value=13 Score=15.13 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHCCCEEEE---ECCHHHHH-HHHHHCCCCCCEEEEECCC
Q ss_conf 89999999999988989999---89989998-9998659995489985878
Q gi|254780450|r 691 DSVRRGSKRMLETRGYTVHE---AFSGTDAL-KVMEKLQGRVDIVISDVVM 737 (803)
Q Consensus 691 ~~~~~~~~~~L~~~g~~v~~---a~~g~eal-~~~~~~~~~~dlil~D~~m 737 (803)
+.|...+..+|+.+|+++.. ..|-.+++ +.+++....+|+|++==+.
T Consensus 17 d~n~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~DlIittGG~ 67 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGT 67 (135)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 258999999999889989998798999999999999984148999982887
No 325
>PRK04965 nitric oxide reductase; Provisional
Probab=51.14 E-value=7.5 Score=16.87 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=7.8
Q ss_pred EEEEECCCCCEEEEEHH
Q ss_conf 09999599938981066
Q gi|254780450|r 39 GILITNERGHIIYANNA 55 (803)
Q Consensus 39 ~i~v~D~~G~i~~~N~a 55 (803)
.|.++..+...-|..+.
T Consensus 29 ~Itvi~~e~~~~Y~rp~ 45 (378)
T PRK04965 29 PITLITADSGDEYNKPD 45 (378)
T ss_pred CEEEEECCCCCCCCCCC
T ss_conf 69999899998876781
No 326
>pfam00497 SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3.
Probab=51.14 E-value=13 Score=15.10 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=34.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 7569997698899999999999889899998998999899986599954899858
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDV 735 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~ 735 (803)
+.+|-++.+..... .+.. ....+..+..+.|..+++.++.. +++|++++|.
T Consensus 110 ~~~I~v~~g~~~~~-~l~~-~~~~~~~i~~~~~~~~~l~~L~~--gr~D~~i~~~ 160 (224)
T pfam00497 110 GKKVGVQKGTTQED-LLKE-LAPKGAEIVLYDDQAEALQALAA--GRVDAVVADS 160 (224)
T ss_pred CCEEEEECCCHHHH-HHHH-HCCCCCEEEEECCHHHHHHHHHC--CCEEEEEECH
T ss_conf 97799968977999-9986-06244516995427888889874--9768999579
No 327
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=51.07 E-value=13 Score=15.09 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=75.6
Q ss_pred HHHHHHCCCC--CCCCCCCCC-CCCC--HHHHHHHHHHCCCCEEEEE-ECCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 4454202322--221013577-6530--3889999985167549999-61889429999943757664433333322223
Q gi|254780450|r 595 PDIMEKIFEP--FFTTKKVGE-GTGL--GLSVVYGIIRQSGGYILPE-SEVGKGTIFRIFLPRYVQEHTQESHYSHDIAI 668 (803)
Q Consensus 595 ~~~~~~iFep--F~ttk~~g~-GtGL--GL~i~~~iv~~~gG~i~v~-S~~g~Gt~F~i~lP~~~~~~~~~~~~~~~~~~ 668 (803)
.-...+=|.| ||....+.. ++=| ||+++-.=|..-+|-|++- =+.|..|...-+|- +..+....
T Consensus 832 APlAArnF~PGQFyRLQN~~~~~~~lmE~lALTga~vD~e~glis~ivle~G~Ss~Lc~~L~----------pgepvvLM 901 (1048)
T PRK06567 832 SPLAAKNFKFGQFFRLQNYSEDIAKLIEPVALSPIDIDVEKGLISFIVYEVGKSTSLCKTLS----------ENEKVVLM 901 (1048)
T ss_pred CHHHHHCCCCCCEEEEEECCCCCHHHHCCEEEECCCCCCCCCEEEEEEEECCCCHHHHHHCC----------CCCEEEEE
T ss_conf 76578528997578874024554323012464113223568848999994188556786378----------99806985
Q ss_pred CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHHH
Q ss_conf 54444533347875699976988999999999998898999989989998999865999548998587889-88899999
Q gi|254780450|r 669 IPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDGPTLLR 747 (803)
Q Consensus 669 ~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G~~~~~ 747 (803)
.|...|.... .+.+|++|.-..-|..++ ..|+..|+.|.-.+-..-.... -.+.|-|++- +=|+ |.++..++
T Consensus 902 GPTG~PTeIp-~~etV~lvgGg~GnavLf-~ilr~~g~~Vlyfa~~~~~~r~----L~sVDrii~i-gS~~mm~avq~~~ 974 (1048)
T PRK06567 902 GPTGSPLEIP-QNKKIVIVDSEVGNIGLL-KVLKENNNEVIFVTYPDIKIRK----LTSVDIVIIN-ASPEIIEELQSLK 974 (1048)
T ss_pred CCCCCCCCCC-CCCEEEEECCCCHHHHHH-HHHHHCCCEEEEEECCCCCCCC----CCCCCEEEEE-CCHHHHHHHHHHH
T ss_conf 7999985379-997699986873088999-9999769869999579855450----2303489993-8868999999998
Q ss_pred HHHHHCCCCCEEEEECCCHHHHHH
Q ss_conf 999868998299990678589987
Q gi|254780450|r 748 ELRKTYPSLKFIFISGYAEDAFSK 771 (803)
Q Consensus 748 ~ir~~~~~~~ii~~t~~~~~~~~~ 771 (803)
.= -..|++.+|..-.-.|.-+.+
T Consensus 975 ~~-~f~~~~~~i~SInSPMQCMMK 997 (1048)
T PRK06567 975 NE-IFGENTEIIVSVNSSMQCMMK 997 (1048)
T ss_pred HH-CCCCCCEEEEECCCHHHHHHH
T ss_conf 62-246434699964880888878
No 328
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=50.56 E-value=14 Score=15.04 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999999998898999989-------9899989998659995489985878898889999999986899829999067
Q gi|254780450|r 692 SVRRGSKRMLETRGYTVHEAF-------SGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGY 764 (803)
Q Consensus 692 ~~~~~~~~~L~~~g~~v~~a~-------~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~ 764 (803)
......+..++..|.+++... |-...+..+.+. .+|.|++ .+++-++..+++++++...+.+++..++.
T Consensus 150 ~~~~~~~~~~~~~g~~iv~~~~~~~~~~d~s~~v~~l~~~--~~d~v~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 225 (340)
T cd06349 150 TSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDA--NPDAIIL--ISYYNDGAPIARQARAVGLDIPVVASSSV 225 (340)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHC--CCCEEEE--ECCCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 9999999999974996999862586667579999999866--9999999--15753599999999976999709985476
No 329
>TIGR01634 tail_P2_I phage tail protein I; InterPro: IPR006521 These sequences represent the family of phage P2 protein I and related tail proteins from a number of temperate phage of Gram-negative bacteria..
Probab=50.15 E-value=11 Score=15.68 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=29.1
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE----EEC-CCCCEEEEEEECC
Q ss_conf 42023222210135776530388999998516754999----961-8894299999437
Q gi|254780450|r 598 MEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILP----ESE-VGKGTIFRIFLPR 651 (803)
Q Consensus 598 ~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v----~S~-~g~Gt~F~i~lP~ 651 (803)
+++|=..++.-+. ||| +.-||..||-.||.|.| +.+ .|.--||++.|-.
T Consensus 62 R~~ir~A~~~~~~--KGt---~~avR~Vves~G~~v~i~EWWq~~P~~~pgTF~L~~~l 115 (139)
T TIGR01634 62 RDVIRSAYLIQRH--KGT---VKAVRRVVESFGGLVDITEWWQTEPAGAPGTFELTLTL 115 (139)
T ss_pred HHHHHHHHHHHCC--CCC---HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEE
T ss_conf 8999999998535--786---13233332034650110102247743369643788752
No 330
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=50.00 E-value=14 Score=14.98 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=22.8
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68763034256641589999999999850799-847888899999998888764300454212
Q gi|254780450|r 420 VGTLAGGIAHDFNNVLTAILLSSDHLLLQSRS-SDASFADLMEIKHNANRAAILVRQLLAFSR 481 (803)
Q Consensus 420 ~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~-~~~~~~~l~~i~~~~~r~~~li~~lLd~sr 481 (803)
++++.+.--||+=+-+- +|+++++. .|++ .|--++.++++-+|+.+
T Consensus 228 VD~~V~V~eeEIA~A~~-------~LLEr~Ki~aEGA---------GA~gvAA~L~~K~~~~k 274 (381)
T TIGR01127 228 VDEVVAVDEEEIAKAIL-------LLLERAKIVAEGA---------GAVGVAAVLEDKVDYVK 274 (381)
T ss_pred CCCEEEECHHHHHHHHH-------HHHCCCCEEECCC---------HHHHHHHHHHHHCCCCC
T ss_conf 79708847377999999-------9860774788274---------58999999975403689
No 331
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain; InterPro: IPR012822 This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (IPR012821 from INTERPRO), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant sucrose phosphate synthase (SPS). At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase..
Probab=49.98 E-value=14 Score=14.97 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.3
Q ss_pred ECHHHHHHHHHHHHHHHH
Q ss_conf 871699999999874227
Q gi|254780450|r 528 TDLSQFEQVLVNLCVNAH 545 (803)
Q Consensus 528 ~D~~~l~qvl~NLl~NA~ 545 (803)
.|...|+++|..-++|..
T Consensus 397 ld~e~i~~AL~~alsd~~ 414 (445)
T TIGR02472 397 LDLEAIASALEQALSDSS 414 (445)
T ss_pred CCHHHHHHHHHHHCCCHH
T ss_conf 898999999997338906
No 332
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=49.89 E-value=14 Score=14.96 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=16.0
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEEEH
Q ss_conf 99999852596199992999689764
Q gi|254780450|r 161 NAIDYLDHSPVGFMSADHQGKILYIN 186 (803)
Q Consensus 161 ~~~~~le~a~~gi~~~D~~g~i~~~N 186 (803)
.+...+.+.+.+.+.+|.-..+.-|-
T Consensus 130 ~~~~~l~~~~i~~~viDEAHcvs~WG 155 (607)
T PRK11057 130 NFLEHLAHWNPVLLAVDEAHCISQWG 155 (607)
T ss_pred HHHHHHHHCCCCEEEEEHHHHHHHCC
T ss_conf 89999971886648853066675415
No 333
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=48.05 E-value=15 Score=14.77 Aligned_cols=80 Identities=15% Similarity=0.177 Sum_probs=51.5
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCE
Q ss_conf 898999989989998999865999548998587889-888--99999999868998299990678589987676057980
Q gi|254780450|r 704 RGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFS 780 (803)
Q Consensus 704 ~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~ 780 (803)
.|++-...-+..+.++.+...+- -.++++|+.=-| |.| +++++++.+ .+++|||+.-|-+.-.+-+.+...+..+
T Consensus 140 ~GW~~~s~~~~~d~~~~~~~~g~-~~il~TdI~rDGtl~G~n~el~~~i~~-~~~~pvIaSGGv~sl~Di~~L~~~gv~G 217 (234)
T PRK13587 140 NGWEEDTELNLFSFVRQLSDIPL-GGIIYTDIAKDGKMSGPNFELTGQLVK-ATTIPVIASGGIRHQQDIQRLASLNVHA 217 (234)
T ss_pred CCCCEECCCCHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCE
T ss_conf 57514258679999999974398-789984026657455799999999997-6799999989989999999999889989
Q ss_pred E-EECC
Q ss_conf 7-5079
Q gi|254780450|r 781 F-LSKP 785 (803)
Q Consensus 781 ~-l~KP 785 (803)
. +-|-
T Consensus 218 vIvGkA 223 (234)
T PRK13587 218 AIIGKA 223 (234)
T ss_pred EEEEEE
T ss_conf 999975
No 334
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=47.99 E-value=13 Score=15.27 Aligned_cols=24 Identities=38% Similarity=0.668 Sum_probs=14.1
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 9954899858788988899999999
Q gi|254780450|r 726 GRVDIVISDVVMPEMDGPTLLRELR 750 (803)
Q Consensus 726 ~~~dlil~D~~mp~m~G~~~~~~ir 750 (803)
..+|+||.|+ +|..+|.....+.+
T Consensus 116 ~~~DvVlSDm-APn~tG~~~~D~~~ 139 (209)
T PRK11188 116 SKVDVVMSDM-APNMSGTPAVDIPR 139 (209)
T ss_pred CCCCEEECCC-CCCCCCCHHHHHHH
T ss_conf 8730896666-65667870335999
No 335
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=47.73 E-value=15 Score=14.74 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=6.8
Q ss_pred HHHHHCCCEEEEECCC
Q ss_conf 9985259619999299
Q gi|254780450|r 164 DYLDHSPVGFMSADHQ 179 (803)
Q Consensus 164 ~~le~a~~gi~~~D~~ 179 (803)
.+++--...++.+-..
T Consensus 76 ~~l~G~n~ti~aYGqT 91 (352)
T cd01364 76 EVLMGYNCTIFAYGQT 91 (352)
T ss_pred HHHCCCCEEEEEECCC
T ss_conf 9977885599987788
No 336
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.32 E-value=15 Score=14.70 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=51.5
Q ss_pred HHHHHHHHHHCCC---EEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHH
Q ss_conf 9999999998898---9999899899989998659995489985878898889999999986899829999067858998
Q gi|254780450|r 694 RRGSKRMLETRGY---TVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFS 770 (803)
Q Consensus 694 ~~~~~~~L~~~g~---~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~ 770 (803)
...+..+-+..++ -.+++.+-.|+.+.+.. .+|.|++| .|+=-++.+.++...+. +.+-.||.-.....
T Consensus 180 ~~~i~~~r~~~~~~~~IeVEv~~l~~~~~a~~~---g~D~ImLD----nms~~~i~~av~~i~~~-~~lEaSGgI~~~ni 251 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLD----NFTLDQLREGVELIDGR-AIVEASGNVSLNTV 251 (281)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHC---CCCEEEEC----CCCHHHHHHHHHHHCCC-EEEEEECCCCHHHH
T ss_conf 999999997589987099996678879999974---99999977----98999999999975793-79999889999999
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 7676057980750
Q gi|254780450|r 771 KNLPKDAKFSFLS 783 (803)
Q Consensus 771 ~~~~~~~~~~~l~ 783 (803)
..+...+ .+||+
T Consensus 252 ~~yA~tG-VD~IS 263 (281)
T PRK06543 252 PAIASTG-VDVIS 263 (281)
T ss_pred HHHHHCC-CCEEE
T ss_conf 9999739-99998
No 337
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=47.21 E-value=15 Score=14.69 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=38.2
Q ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC--CCH-HHHHHHHHH---HCCC--CCEEEEE
Q ss_conf 9999998898999989989998999865999548998587889--888-999999998---6899--8299990
Q gi|254780450|r 697 SKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE--MDG-PTLLRELRK---TYPS--LKFIFIS 762 (803)
Q Consensus 697 ~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~--m~G-~~~~~~ir~---~~~~--~~ii~~t 762 (803)
+...|...||.|..-+||.-..+.+ ...|.+.||+..|. |.. +.....+.. ..++ +++|+.+
T Consensus 92 L~~~l~~~g~~v~iETnGt~~~~~~----~~~d~~~~d~K~psSg~~~~~~~~~~~l~~~~~~~~~~~KFVI~~ 161 (238)
T TIGR03365 92 LIDLGKAKGYRFALETQGSVWQDWF----RDLDDLTLSPKPPSSGMETDWQALDDCIERLDDGPQTSLKVVVFD 161 (238)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCC----CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 9999985798499978998760004----557889996477999896346789999998444897069999767
No 338
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=46.98 E-value=16 Score=14.66 Aligned_cols=88 Identities=18% Similarity=0.227 Sum_probs=57.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH--CCCCCEEE
Q ss_conf 99976988999999999998898999989989-9989998659995489985878898889999999986--89982999
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGT-DALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT--YPSLKFIF 760 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~-eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~--~~~~~ii~ 760 (803)
||+|=-.+..-.-...+++..|++...-.+|. +--..+.......|+||+=. +.-+..++..+++. .-++|+++
T Consensus 2 vLiIGG~~~~~~~~~~~~~~~G~~~~~h~~g~~~~~~~l~~~i~~aDlVI~~t---d~vsH~~~~~vK~~akk~~~p~v~ 78 (96)
T pfam10087 2 VLIVGGRDDRLGHYRKLLEKYGGEFIVHDGGREKKKKKIPALLKKADLVIVFT---DCVSHDAMWRVKEEAKKRGIPVVF 78 (96)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEC---CCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 99995855678999999998399899965898733556775058988899971---766879999999999984997899
Q ss_pred EECCCHHHHHHHHH
Q ss_conf 90678589987676
Q gi|254780450|r 761 ISGYAEDAFSKNLP 774 (803)
Q Consensus 761 ~t~~~~~~~~~~~~ 774 (803)
+...+-.++.+.+.
T Consensus 79 ~~s~s~~~l~~~l~ 92 (96)
T pfam10087 79 SRSRSLSALERALA 92 (96)
T ss_pred ECCCCHHHHHHHHH
T ss_conf 76874999999999
No 339
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases..
Probab=46.17 E-value=11 Score=15.79 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEEC---CCCC
Q ss_conf 6530388999998516754999961---8894
Q gi|254780450|r 614 GTGLGLSVVYGIIRQSGGYILPESE---VGKG 642 (803)
Q Consensus 614 GtGLGL~i~~~iv~~~gG~i~v~S~---~g~G 642 (803)
=||+|++|+ |+.||++=+|.- ||-|
T Consensus 236 iTA~GM~~g----~Ll~GT~viE~iFswPG~G 263 (315)
T TIGR02789 236 ITALGMHIG----ELLGGTLVIENIFSWPGVG 263 (315)
T ss_pred HHHHHHHHH----HHHHCCEEEEEECCCCCHH
T ss_conf 776001388----7840711454101266610
No 340
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=46.00 E-value=16 Score=14.56 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 653038899999851675499996188942999994
Q gi|254780450|r 614 GTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFL 649 (803)
Q Consensus 614 GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i~l 649 (803)
|--||.- -|+..+||.+.-...+-.|-+-.+..
T Consensus 77 GIClG~Q---~ia~~~Gg~v~~~~~~~hG~~~~i~~ 109 (192)
T PRK08857 77 GVCLGHQ---AIAQVFGGDVVRARQVMHGKTSPIRH 109 (192)
T ss_pred EECHHHH---HHHHHHCCEEEECCCCEEEEEEEEEE
T ss_conf 9879999---99998398299888432511579998
No 341
>pfam05127 DUF699 Putative ATPase (DUF699). This putative domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often associated with pfam00583. This domain is found in isolation in the uncharacterized protein HI1254 from Haemophilus influenzae.
Probab=45.44 E-value=16 Score=14.62 Aligned_cols=37 Identities=32% Similarity=0.524 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHCCCCC-----CCC-CCCCCCCCCHHHH
Q ss_conf 9999788668844542023222-----210-1357765303889
Q gi|254780450|r 584 VEVEDTGIGMSPDIMEKIFEPF-----FTT-KKVGEGTGLGLSV 621 (803)
Q Consensus 584 i~V~D~G~GI~~~~~~~iFepF-----~tt-k~~g~GtGLGL~i 621 (803)
+-|.|--.+||...+.++.+.| .|| .+| +|||=|+++
T Consensus 78 llvVDEAAaIP~p~L~~ll~~~~rvvfaTTihGY-EGtGRgF~l 120 (160)
T pfam05127 78 LLVVDEAAAIPLPLLKQLLEGFPRVVFATTVHGY-EGTGRGFSL 120 (160)
T ss_pred EEEEEHHHCCCHHHHHHHHHHCCEEEEEEECCCC-CCCCHHHHH
T ss_conf 8997324218889999998508869999633651-145812456
No 342
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=44.96 E-value=17 Score=14.45 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=28.4
Q ss_pred EEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCE
Q ss_conf 9961889429999943757664433333322223544445333478756999769889999999999988989
Q gi|254780450|r 635 PESEVGKGTIFRIFLPRYVQEHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYT 707 (803)
Q Consensus 635 v~S~~g~Gt~F~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~~~~~~~~~~L~~~g~~ 707 (803)
+..+.|-.|.|.+.=|..- |+.+ ...++=|=| +.....+++.|+.+|++
T Consensus 363 vRk~Lg~rTiFNiLGPL~N-------------Pa~~----------~~qliGV~~-~~~~~~~a~~l~~lG~~ 411 (531)
T PRK09522 363 VRQQLKTRTLFNVLGPLIN-------------PAHP----------PLALIGVYS-PELVLPIAETLRVLGYQ 411 (531)
T ss_pred HHHHCCCCCCEECCCCCCC-------------CCCC----------CCEEEEECC-HHHHHHHHHHHHHHCCC
T ss_conf 9997198851213455578-------------8788----------726980379-99999999999984997
No 343
>PRK13121 consensus
Probab=44.91 E-value=17 Score=14.45 Aligned_cols=11 Identities=9% Similarity=0.262 Sum_probs=4.5
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999851
Q gi|254780450|r 790 QLATSVHELLQ 800 (803)
Q Consensus 790 ~L~~~i~~~L~ 800 (803)
+..+.++++|+
T Consensus 254 ~fi~~lk~ald 264 (265)
T PRK13121 254 DFLAELRAALD 264 (265)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999866
No 344
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=44.68 E-value=17 Score=14.42 Aligned_cols=26 Identities=8% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCEEE
Q ss_conf 99999998525961999929996897
Q gi|254780450|r 159 LQNAIDYLDHSPVGFMSADHQGKILY 184 (803)
Q Consensus 159 ~~~~~~~le~a~~gi~~~D~~g~i~~ 184 (803)
...+.+++++.+...+.+|.-..|--
T Consensus 116 ~~~Fl~~L~~~~i~L~AvDEAHCvSQ 141 (607)
T TIGR01389 116 QDYFLNMLKRLTIALLAVDEAHCVSQ 141 (607)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 18999887319930899832502166
No 345
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=44.55 E-value=17 Score=14.41 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=7.1
Q ss_pred CCCCHHHHHHCC
Q ss_conf 668844542023
Q gi|254780450|r 591 IGMSPDIMEKIF 602 (803)
Q Consensus 591 ~GI~~~~~~~iF 602 (803)
.|++++.++++.
T Consensus 399 LGys~~eI~~L~ 410 (415)
T TIGR03253 399 LGYDDDEIAELK 410 (415)
T ss_pred CCCCHHHHHHHH
T ss_conf 599999999999
No 346
>pfam00994 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=44.40 E-value=17 Score=14.39 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHCCCEEE---EECCHHHHHH-HHHHCCCCCCEEEEE
Q ss_conf 999999999998898999---9899899989-998659995489985
Q gi|254780450|r 692 SVRRGSKRMLETRGYTVH---EAFSGTDALK-VMEKLQGRVDIVISD 734 (803)
Q Consensus 692 ~~~~~~~~~L~~~g~~v~---~a~~g~eal~-~~~~~~~~~dlil~D 734 (803)
.|...++.+|+.+|+++. .+.|-.+.+. .+...-...|+|++-
T Consensus 17 sn~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~Dliitt 63 (140)
T pfam00994 17 TNGPLLAALLREAGAEVIRYGIVPDDPEAIKEALAAAADEADVVITT 63 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf 69999999999879937799897889999999999973269999987
No 347
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=44.35 E-value=17 Score=14.39 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=53.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 699976988999999999998898999989-9899989998659995489985878898889999999986899829999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAF-SGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~-~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
.+++||.|+... +.++..|+.+.... +=.+.|+.+ .-...|.++....=+ ..-..++..+|+.+|..+||+.
T Consensus 22 ~v~vId~d~~~~----~~~~~~~~~vi~GD~~~~~~L~~a--~i~~a~~vi~~~~~d-~~n~~~~~~~r~~~~~~~iiar 94 (115)
T pfam02254 22 PVVVIDKDPERV----EELREEGVPVVVGDATDEEVLEEA--GIEDADAVVAATGDD-EANILIVLLARELNPAKKIIAR 94 (115)
T ss_pred CEEEEECCHHHH----HHHHHCCCEEEEEECCCHHHHHHH--CCCCCCEEEEECCCH-HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999987998----778866986999956886678761--920287999962984-9999999999997899809999
Q ss_pred ECCCHHHHHHHHHHCCC
Q ss_conf 06785899876760579
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAK 778 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~ 778 (803)
+-+.. ..+.+...|.
T Consensus 95 ~~~~~--~~~~l~~~Ga 109 (115)
T pfam02254 95 ANDPE--HAELLRRLGA 109 (115)
T ss_pred ECCHH--HHHHHHHCCC
T ss_conf 87899--9999997698
No 348
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=43.97 E-value=17 Score=14.35 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=28.3
Q ss_pred EEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999997886688445420232222101357765303889999985167
Q gi|254780450|r 583 LVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSG 630 (803)
Q Consensus 583 ~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~g 630 (803)
.....|-=-++|++.+.+ |+-|||--.+ -=.|+.|.+.|+|.-+-|
T Consensus 95 ~~~~~DlR~pLP~~l~~~-FD~f~TDPPy-T~~G~~LFlsRgi~~Lk~ 140 (243)
T pfam01861 95 EAFVHDLRNPLPEDLKHK-FDVFITDPPE-TVDGLKAFLGRGIATLKG 140 (243)
T ss_pred EEEEECCCCCCCHHHHCC-CCEEECCCCC-CHHHHHHHHHHHHHHHCC
T ss_conf 688741014899999616-7989718998-778999999999998266
No 349
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=43.86 E-value=17 Score=14.34 Aligned_cols=66 Identities=23% Similarity=0.186 Sum_probs=38.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCCC-C-HHHHHHHHHH
Q ss_conf 99976988999999999998898999-9899899989998659995489985878898-8-8999999998
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPEM-D-GPTLLRELRK 751 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~m-~-G~~~~~~ir~ 751 (803)
+..||-|......+..-++.+++.-. ...+-..++..+.....+||+|.+| =|=. + -.++...|..
T Consensus 69 v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~~~~~~~~~~fdiIF~D--PPY~~~~~~~~l~~l~~ 137 (181)
T pfam03602 69 VVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLRLAGKGPPFDLVFLD--PPYAKGLIEEALELLAE 137 (181)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCEEECC--CCCCCHHHHHHHHHHHH
T ss_conf 9999699999999999999858997799810899998753357888766359--97542069999999996
No 350
>COG5301 Phage-related tail fibre protein [General function prediction only]
Probab=43.74 E-value=17 Score=14.33 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=30.6
Q ss_pred CCCCCCCCE--EEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEE
Q ss_conf 566788978--999999788668844542023222210135776530388999998516754999961889429999
Q gi|254780450|r 573 YSDLPTKDM--VLVEVEDTGIGMSPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRI 647 (803)
Q Consensus 573 ~~~~~~~~~--v~i~V~D~G~GI~~~~~~~iFepF~ttk~~g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~Gt~F~i 647 (803)
..+...+|+ +-+.|.++|+||. .|.|+|+.|+...| +.|..|.|+.|+-
T Consensus 476 a~~fN~gd~~~if~~vw~ng~gi~------------------~gaggg~gin~s~v--------a~s~~ga~~s~t~ 526 (587)
T COG5301 476 AGDFNPGDYLLIFGFVWNNGPGIL------------------PGAGGGVGINTSAV--------ARSTIGAGVSATA 526 (587)
T ss_pred CCCCCCCCCCEEEEEEECCCCCCC------------------CCCCCCCCCCCCCC--------CCCCCCCCCEEEE
T ss_conf 566488651226678751776656------------------56553423136732--------2033476220231
No 351
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=43.61 E-value=17 Score=14.31 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=32.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHH
Q ss_conf 756999769889999999999988989999899899989
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALK 719 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~ 719 (803)
..-++|+=||......+.++.+..|+..+.+.+-..+..
T Consensus 148 ~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~a~~ 186 (211)
T COG2085 148 RRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPLENARI 186 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCCCC
T ss_conf 566898459499999999999962966340356112541
No 352
>PRK06815 hypothetical protein; Provisional
Probab=43.58 E-value=17 Score=14.31 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=13.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 99976988999999999998898999
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVH 709 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~ 709 (803)
+..|.|++.. ..++.+++..|.-|.
T Consensus 253 ~v~Vsd~e~~-~a~r~L~~~egi~ve 277 (318)
T PRK06815 253 KVLVSEQEIK-AAMRLIARTDRWIIE 277 (318)
T ss_pred EEEECHHHHH-HHHHHHHHHCCCEEH
T ss_conf 9998999999-999999998495886
No 353
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=43.47 E-value=17 Score=14.30 Aligned_cols=99 Identities=25% Similarity=0.229 Sum_probs=53.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 75699976988999999999998898999989989998999865999548998587889888999999998689982999
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+.+|-++...... ..+.... ....+..+.+..+++.++.. ++.|+++.|. ..+...+++..++..++.
T Consensus 105 g~~i~v~~g~~~~-~~l~~~~--~~~~~~~~~~~~~~~~~l~~--G~vD~~v~~~-------~~~~~~~~~~~~~~~~~~ 172 (218)
T cd00134 105 GKKVAVQKGSTAE-KYLKKAL--PEAKVVSYDDNAEALAALEN--GRADAVIVDE-------IALAALLKKHPPELKIVG 172 (218)
T ss_pred CCEEEEECCCHHH-HHHHHHH--CCCEEEEECCHHHHHHHHHC--CCCEEEEECH-------HHHHHHHHHCCCCCEEEC
T ss_conf 9626795898899-9999731--57549996999999999985--9946999769-------999999986799819963
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 90678589987676057980750797999999999998513
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
..... ....+. +.++-+-.+|.+.++++|+.
T Consensus 173 ~~~~~---------~~~~~~-~~~~~~~~~l~~~~n~~l~~ 203 (218)
T cd00134 173 PSIDL---------EPLGFG-VAVGKDNKELLDAVNKALKE 203 (218)
T ss_pred CCCCC---------CCEEEE-EEECCCCHHHHHHHHHHHHH
T ss_conf 56676---------734899-99749999999999999999
No 354
>PRK03220 consensus
Probab=43.43 E-value=17 Score=14.29 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=55.6
Q ss_pred EEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCE----
Q ss_conf 99989989998999865999548998587889-888--99999999868998299990678589987676057980----
Q gi|254780450|r 708 VHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFS---- 780 (803)
Q Consensus 708 v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~---- 780 (803)
-.+..+..+.++.+.+.+ --.++++|+.--| |.| +++++.++.. .++|+|+.-|-+.-.+-..+...+..+
T Consensus 155 ~~t~~~~~~~i~~~~~~g-~geil~tdI~rDGt~~G~d~~l~~~i~~~-~~~piIasGGv~s~~di~~l~~~g~~gv~~g 232 (257)
T PRK03220 155 RGTGIDAVEWAARGAELG-VGEILLNSMDADGTKAGFDLEMLRAVRAA-VTVPVIASGGAGAVEHFAPAVAAGADAVLAA 232 (257)
T ss_pred EECCCCHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEH
T ss_conf 602875999999986269-88899998868660237896999999974-8999899878999999999997899799874
Q ss_pred --EEECCCCHHHHHHHHHH
Q ss_conf --75079799999999999
Q gi|254780450|r 781 --FLSKPFSLKQLATSVHE 797 (803)
Q Consensus 781 --~l~KP~~~~~L~~~i~~ 797 (803)
|..+=+++.++.+.++.
T Consensus 233 ~a~~~~~~s~~~~k~~l~~ 251 (257)
T PRK03220 233 SVFHFGELTIGQVKAALAA 251 (257)
T ss_pred HHHHCCCCCHHHHHHHHHH
T ss_conf 6878899889999999998
No 355
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.20 E-value=18 Score=14.27 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 16999999998742
Q gi|254780450|r 530 LSQFEQVLVNLCVN 543 (803)
Q Consensus 530 ~~~l~qvl~NLl~N 543 (803)
+..+.+.|.+++.+
T Consensus 106 ~~~~~~~l~~i~~g 119 (292)
T PRK03378 106 PDNAQQQLADVLEG 119 (292)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 78999999999838
No 356
>PRK13118 consensus
Probab=43.13 E-value=18 Score=14.26 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=6.6
Q ss_pred HHHHHCCCCEEEEEEC
Q ss_conf 9998516754999961
Q gi|254780450|r 623 YGIIRQSGGYILPESE 638 (803)
Q Consensus 623 ~~iv~~~gG~i~v~S~ 638 (803)
+.|++.-.|.|.+-|.
T Consensus 164 ~~i~~~a~gFiY~vs~ 179 (269)
T PRK13118 164 PRVLEHASGYLYYVSL 179 (269)
T ss_pred HHHHHCCCCCEEEEEC
T ss_conf 9998437883899854
No 357
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=43.10 E-value=18 Score=14.26 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=31.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 999769889999999999988989--999899899989998659995489985878898
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYT--VHEAFSGTDALKVMEKLQGRVDIVISDVVMPEM 740 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~--v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m 740 (803)
|--||-++...+..++.|+.+|+. .....||.+... ...+||.|+..-..|.+
T Consensus 104 V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~----~~apfD~Iiv~aa~~~i 158 (214)
T PRK13942 104 VTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYE----ENAPYDRIYVTAAGPDI 158 (214)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CCCCCCEEEEEECCCCC
T ss_conf 79997179999999999986376875898567566784----45981279998517657
No 358
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=43.10 E-value=18 Score=14.26 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=8.8
Q ss_pred EEEEECCCCCCHHHHHHCCCCC
Q ss_conf 9999788668844542023222
Q gi|254780450|r 584 VEVEDTGIGMSPDIMEKIFEPF 605 (803)
Q Consensus 584 i~V~D~G~GI~~~~~~~iFepF 605 (803)
+.+.+.++...--..-..++||
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~p~ 431 (491)
T COG0608 410 FALKDEDITLELVSALETLEPF 431 (491)
T ss_pred EECCCCCCCHHHHHHHHCCCCC
T ss_conf 4336330049999987544874
No 359
>COG1158 Rho Transcription termination factor [Transcription]
Probab=42.44 E-value=6.5 Score=17.31 Aligned_cols=31 Identities=42% Similarity=0.643 Sum_probs=19.4
Q ss_pred EEECCCCCCHHHHHHCCCCCCCCCCCCCCCC-CHHHHHHHHHH
Q ss_conf 9978866884454202322221013577653-03889999985
Q gi|254780450|r 586 VEDTGIGMSPDIMEKIFEPFFTTKKVGEGTG-LGLSVVYGIIR 627 (803)
Q Consensus 586 V~D~G~GI~~~~~~~iFepF~ttk~~g~GtG-LGL~i~~~iv~ 627 (803)
..|||.-|+ +-|||.| +||| .-|.+-++|.+
T Consensus 322 LVdTGSrMD----eVIfEEF-------KGTGNmEl~LdR~lae 353 (422)
T COG1158 322 LVDTGSRMD----EVIFEEF-------KGTGNMELHLDRKLAE 353 (422)
T ss_pred HHHCCCCCC----HHHHHHH-------CCCCCEEEEEHHHHHH
T ss_conf 441477511----2025342-------5777507886013444
No 360
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=42.21 E-value=18 Score=14.17 Aligned_cols=78 Identities=15% Similarity=0.329 Sum_probs=60.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 69997698899999999999889--8999989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRG--YTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g--~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
.|++.++|+.+.+.+...-++|| +.+....+...-+..+.+ ++ ++.-+.|=|..=-+.+..||....+-|+++
T Consensus 33 ~i~l~~~D~~~~etv~~V~~rwGG~F~~e~~~~~~~~ir~~k~-~G----~vVHLTMYG~~i~~~~~~Ir~~~~~~~ilv 107 (175)
T PRK03958 33 KILFASEDEHVKESVEDIVERWGGPFKVEVTKSWKKYIREFKD-GG----IVVHLTMYGENINDVMDEIREAKTCKPLLI 107 (175)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCC-CC----EEEEEECCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 6787688766899999999861896699976897999863025-88----899983688866787767653057887899
Q ss_pred EECCC
Q ss_conf 90678
Q gi|254780450|r 761 ISGYA 765 (803)
Q Consensus 761 ~t~~~ 765 (803)
+-|-.
T Consensus 108 VVGae 112 (175)
T PRK03958 108 IVGAE 112 (175)
T ss_pred EECCC
T ss_conf 96788
No 361
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.97 E-value=18 Score=14.14 Aligned_cols=90 Identities=21% Similarity=0.175 Sum_probs=55.3
Q ss_pred EEEECCCHH-----HHHHHHHHHHHCCCE---EEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999769889-----999999999988989---999899899989998659995489985878898889999999986899
Q gi|254780450|r 684 VLLVEDEDS-----VRRGSKRMLETRGYT---VHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPS 755 (803)
Q Consensus 684 iLvvdD~~~-----~~~~~~~~L~~~g~~---v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~ 755 (803)
||+= ||+. +...+...-...++. .+++.|-.|+.+.+.. .+|.|++| .|+--++.+.+....+.
T Consensus 165 iLIK-dNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~sl~q~~~al~~---g~d~ImLD----Nmsp~~~~~av~~~~~~ 236 (281)
T PRK06106 165 VLIK-DNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLEQLEEALEL---GVDAVLLD----NMSPDTLREAVAIVAGR 236 (281)
T ss_pred EEEE-HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHC---CCCEEEEC----CCCHHHHHHHHHHHCCC
T ss_conf 7777-8798743889999999997579972499996999999999727---99899987----99999999999985684
Q ss_pred CCEEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 8299990678589987676057980750
Q gi|254780450|r 756 LKFIFISGYAEDAFSKNLPKDAKFSFLS 783 (803)
Q Consensus 756 ~~ii~~t~~~~~~~~~~~~~~~~~~~l~ 783 (803)
. ++-.||.-....-..+...+ .+|++
T Consensus 237 ~-~~EaSGgI~~~ni~~yA~tG-vD~IS 262 (281)
T PRK06106 237 A-ITEASGRITPETAPAIAASG-VDLIS 262 (281)
T ss_pred E-EEEEECCCCHHHHHHHHHCC-CCEEE
T ss_conf 6-89997899999999999739-99998
No 362
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=41.84 E-value=18 Score=14.13 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=6.5
Q ss_pred CCCCHHHHHHCC
Q ss_conf 668844542023
Q gi|254780450|r 591 IGMSPDIMEKIF 602 (803)
Q Consensus 591 ~GI~~~~~~~iF 602 (803)
.|.+++.++.+.
T Consensus 400 LGys~~eI~~L~ 411 (416)
T PRK05398 400 LGYSDDQIAAMK 411 (416)
T ss_pred CCCCHHHHHHHH
T ss_conf 699999999999
No 363
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=41.65 E-value=19 Score=14.11 Aligned_cols=103 Identities=7% Similarity=0.088 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCCCEEEEECCCCC--CCHHHHHHHHHHHC-CCCCEEEEECC
Q ss_conf 89999999999988989999---89989998999865999548998587889--88899999999868-99829999067
Q gi|254780450|r 691 DSVRRGSKRMLETRGYTVHE---AFSGTDALKVMEKLQGRVDIVISDVVMPE--MDGPTLLRELRKTY-PSLKFIFISGY 764 (803)
Q Consensus 691 ~~~~~~~~~~L~~~g~~v~~---a~~g~eal~~~~~~~~~~dlil~D~~mp~--m~G~~~~~~ir~~~-~~~~ii~~t~~ 764 (803)
..-..+++.+|+..||+|+- ..++.+-++.+.++ ..|+|.+-.-+-. .....+.+.+++.. .++|++ +-|.
T Consensus 13 d~G~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~--~ad~i~vSsl~g~~~~~~~~l~~~L~e~G~~di~vv-vGG~ 89 (128)
T cd02072 13 AVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET--DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY-VGGN 89 (128)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHC--CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE-ECCC
T ss_conf 7889999999997897298479889999999999873--999999823202562489999999996799999899-7898
Q ss_pred -C--H---HHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf -8--5---899876760579807507979999999999
Q gi|254780450|r 765 -A--E---DAFSKNLPKDAKFSFLSKPFSLKQLATSVH 796 (803)
Q Consensus 765 -~--~---~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~ 796 (803)
. . +...+.+.+.+....-...-++.+..+.++
T Consensus 90 i~i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~~ 127 (128)
T cd02072 90 LVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 67783104899999996696857499879999999985
No 364
>PRK02155 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.59 E-value=19 Score=14.10 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q ss_conf 699999999874
Q gi|254780450|r 531 SQFEQVLVNLCV 542 (803)
Q Consensus 531 ~~l~qvl~NLl~ 542 (803)
..+...|.+++.
T Consensus 107 ~~~~~~l~~i~~ 118 (291)
T PRK02155 107 SDMQEALPPMLA 118 (291)
T ss_pred HHHHHHHHHHHC
T ss_conf 889999999985
No 365
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=41.22 E-value=19 Score=14.07 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHCCCCEE-EEEECCCCCEE
Q ss_conf 5303889999985167549-99961889429
Q gi|254780450|r 615 TGLGLSVVYGIIRQSGGYI-LPESEVGKGTI 644 (803)
Q Consensus 615 tGLGL~i~~~iv~~~gG~i-~v~S~~g~Gt~ 644 (803)
||+-+-=|=++|+..||.+ .+-|-.++|-|
T Consensus 123 TGGS~~e~~~~i~~~GG~vvg~a~iidRGfC 153 (205)
T TIGR01367 123 TGGSLLEAIKAIEELGGQVVGLACIIDRGFC 153 (205)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEEHHCCCHH
T ss_conf 4744899999998579827984211204111
No 366
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=41.16 E-value=19 Score=14.06 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=53.2
Q ss_pred EEEECCCHHH-----HHHHHHHHHHCCCEE---EEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH-CC
Q ss_conf 9997698899-----999999999889899---99899899989998659995489985878898889999999986-89
Q gi|254780450|r 684 VLLVEDEDSV-----RRGSKRMLETRGYTV---HEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKT-YP 754 (803)
Q Consensus 684 iLvvdD~~~~-----~~~~~~~L~~~g~~v---~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~-~~ 754 (803)
|| +-||+.. +..+++.=+..+|.+ +++.|-.|+.+++.. ..|+|++| .|+-.++-+.+... .+
T Consensus 161 vl-iKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLD----Nm~~e~~~~av~~l~~~ 232 (280)
T COG0157 161 VL-IKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLD----NMSPEELKEAVKLLGLA 232 (280)
T ss_pred EE-EHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHC---CCCEEEEC----CCCHHHHHHHHHHHCCC
T ss_conf 77-604478875359999999997589986289974999999999974---99999976----99999999999974447
Q ss_pred CCCEEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 98299990678589987676057980750
Q gi|254780450|r 755 SLKFIFISGYAEDAFSKNLPKDAKFSFLS 783 (803)
Q Consensus 755 ~~~ii~~t~~~~~~~~~~~~~~~~~~~l~ 783 (803)
.-.++-+||.-....-..+...+ .+|++
T Consensus 233 ~~~~lEaSGgIt~~ni~~yA~tG-VD~IS 260 (280)
T COG0157 233 GRALLEASGGITLENIREYAETG-VDVIS 260 (280)
T ss_pred CCEEEEEECCCCHHHHHHHHHCC-CCEEE
T ss_conf 76699975897877899986269-97998
No 367
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.95 E-value=19 Score=14.04 Aligned_cols=11 Identities=18% Similarity=0.450 Sum_probs=3.7
Q ss_pred EEEECCCCCEE
Q ss_conf 99992999689
Q gi|254780450|r 173 FMSADHQGKIL 183 (803)
Q Consensus 173 i~~~D~~g~i~ 183 (803)
++.+--||.++
T Consensus 66 ii~lGGDGT~L 76 (296)
T PRK01231 66 VIVVGGDGSLL 76 (296)
T ss_pred EEEECCCCHHH
T ss_conf 99957872899
No 368
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=40.93 E-value=19 Score=14.04 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=46.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 8756999769889999999999988989999899899989998659995489985878898
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEM 740 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m 740 (803)
.+..++||=....+..-++.+|...|++|..+++-..-|... -..-|+|++-.+-|++
T Consensus 35 ~Gk~vvViGrS~iVG~Pla~lL~~~~atVtichs~T~nl~~~---~~~ADIvI~A~G~p~~ 92 (159)
T pfam02882 35 AGKNVVVIGRSNIVGKPLALLLLNANATVTVCHSKTKDLAEI---TREADIVVVAVGKPGL 92 (159)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHH---HHCCCEEEEECCCCCC
T ss_conf 786699988873148999999987799899981899997896---3003444231588550
No 369
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=40.56 E-value=19 Score=14.00 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=44.4
Q ss_pred EECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEE
Q ss_conf 989989998999865999548998587889-888--999999998689982999906785899876760579807
Q gi|254780450|r 710 EAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSF 781 (803)
Q Consensus 710 ~a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~ 781 (803)
...+..+.++.+.+.+ .-.++++|+.--| |.| +++++.+++. .++|+++.-|-+.-.+-+.+...+..++
T Consensus 145 ~~~~~~~~i~~~~~~g-~~eii~tdi~~dGt~~G~d~~l~~~i~~~-~~~pii~~GGv~~~~di~~l~~~g~~gv 217 (229)
T pfam00977 145 TGIDAVEWAKKLEELG-AGEILLTDIDRDGTLSGPDLELTRELAEA-VNIPVIASGGVGSLEDLKELFSEGVDGV 217 (229)
T ss_pred CCCCHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 6744334456776516-75068877504275666899999999976-8998999858999999999998799899
No 370
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=40.47 E-value=19 Score=13.99 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=58.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 699976988999999999998898999989--989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAF--SGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~--~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+.++|-|.+..... ...+. .+..|.... +..+-.+.+... |+.++=-.-.+--|..+++++ .-++|||+
T Consensus 222 ~l~i~G~g~~~~~~-~~~~~-~~~~v~f~G~~~~~~~~~~~~~a----di~v~pS~~~E~fg~~~lEAm---a~G~PvIa 292 (359)
T cd03823 222 ELVIVGNGLELEEE-SYELE-GDPRVEFLGAYPQEEIDDFYAEI----DVLVVPSIWPENFPLVIREAL---AAGVPVIA 292 (359)
T ss_pred EEEEECCCCHHHHH-HHHHH-CCCCCEECCCCCHHHHHHHHHHC----CCCCCCCCCCCCCCHHHHHHH---HCCCCEEE
T ss_conf 89997786056899-99972-57764880656789999999865----736567756577747999999---82998998
Q ss_pred EECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 906785899876760579807507979999999999985137
Q gi|254780450|r 761 ISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 761 ~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
.. .+ ...+ ....+..+||.+|-+.++|.++|.++|+.+
T Consensus 293 s~-~g--g~~e-~i~~g~~G~lv~~~d~~~la~ai~~ll~d~ 330 (359)
T cd03823 293 SD-IG--GMAE-LVRDGVNGLLFPPGDAEDLAAALERLIDDP 330 (359)
T ss_pred CC-CC--CCHH-HHCCCCCEEEECCCCHHHHHHHHHHHHCCH
T ss_conf 88-99--8175-603798679989999999999999998499
No 371
>PRK12678 transcription termination factor Rho; Provisional
Probab=40.21 E-value=3.7 Score=19.01 Aligned_cols=31 Identities=39% Similarity=0.547 Sum_probs=20.5
Q ss_pred EEECCCCCCHHHHHHCCCCCCCCCCCCCCCC-CHHHHHHHHHH
Q ss_conf 9978866884454202322221013577653-03889999985
Q gi|254780450|r 586 VEDTGIGMSPDIMEKIFEPFFTTKKVGEGTG-LGLSVVYGIIR 627 (803)
Q Consensus 586 V~D~G~GI~~~~~~~iFepF~ttk~~g~GtG-LGL~i~~~iv~ 627 (803)
..|||.-|+ +-|||.| +||| +-|.+.+.|.+
T Consensus 560 LveTGSrmD----evIfeEF-------KGTGNmEl~LdR~la~ 591 (667)
T PRK12678 560 LVETGSTMD----TVIFEEF-------KGTGNAELKLDRKIAD 591 (667)
T ss_pred HHCCCCHHH----HHHHHHH-------CCCCCEEEEECHHHHH
T ss_conf 530465067----8899885-------3766428886233564
No 372
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=40.16 E-value=20 Score=13.95 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=54.8
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH--CCCC
Q ss_conf 98999989989998999865999548998587889-888--999999998689982999906785899876760--5798
Q gi|254780450|r 705 GYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAEDAFSKNLPK--DAKF 779 (803)
Q Consensus 705 g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~--~~~~ 779 (803)
|+.=.+.-+..++.+.+++.++--.+|.||+.=-| |.| +++++++.+..+++|+++-=|=+...+-+.+.. .+..
T Consensus 144 GW~E~s~~~~~~~~~~~~~~G~~~~ii~TdI~~DGtl~G~n~~~~~~~~~~~~~~~viaSGGv~s~~D~~~L~~~~~G~~ 223 (241)
T TIGR00007 144 GWKEKSEVSLEELAKRLEELGELEGIIYTDISRDGTLSGPNFELTKELVKALVNVPVIASGGVSSIDDLRALKEIELGVY 223 (241)
T ss_pred EEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCC
T ss_conf 04113562799999998515863368997520067200787328899998735841899426578899999997159832
Q ss_pred EE
Q ss_conf 07
Q gi|254780450|r 780 SF 781 (803)
Q Consensus 780 ~~ 781 (803)
+.
T Consensus 224 Gv 225 (241)
T TIGR00007 224 GV 225 (241)
T ss_pred EE
T ss_conf 79
No 373
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=39.74 E-value=20 Score=13.91 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=69.7
Q ss_pred CCHHH-HHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH----HHHHHHHHC-CCCCEE
Q ss_conf 98899-99999999988989999---8998999899986599954899858788988899----999999868-998299
Q gi|254780450|r 689 DEDSV-RRGSKRMLETRGYTVHE---AFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPT----LLRELRKTY-PSLKFI 759 (803)
Q Consensus 689 D~~~~-~~~~~~~L~~~g~~v~~---a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~----~~~~ir~~~-~~~~ii 759 (803)
|-++. ..+++.+|+..||+|+. ...+.+-++.+.++ ..|+|.+-.-- | .+.. +...+++.. .++|++
T Consensus 14 D~Hd~G~~iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~--~ad~igiSsl~-G-~~~~~~~~l~~~l~~~g~~di~vv 89 (137)
T PRK02261 14 DCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET--DADAILVSSLY-G-HGEIDCRGLREKCIEAGLGDILLY 89 (137)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHC--CCCEEEECCCC-C-CCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 6117889999999997897498468879999999999873--99999971111-2-661279999999996799999699
Q ss_pred EEECCC------HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 990678------589987676057980750797999999999998513
Q gi|254780450|r 760 FISGYA------EDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 760 ~~t~~~------~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
+-|.- .+...+.+.+.+...+...--++.+....|++.|..
T Consensus 90 -vGG~i~i~~~dp~~~~~~L~~~Gv~~VF~pGT~~~~ii~~i~~~l~~ 136 (137)
T PRK02261 90 -VGGNLVVGKHDFEEVEKKFKEMGFDRVFAPGTDLEEVIDDLKADLNA 136 (137)
T ss_pred -ECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHC
T ss_conf -83621678878399999999779798879788999999999998633
No 374
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=39.74 E-value=20 Score=13.91 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=34.4
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHH
Q ss_conf 699871699999999874227652067885799999850421012245566788978999999788668844
Q gi|254780450|r 525 GVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPD 596 (803)
Q Consensus 525 ~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~ 596 (803)
.+.+||.|-+-+--|++.|+ +.+.+ + + ..+++.+.-.| -+++|.-+|.|||.-
T Consensus 18 LmPGDPlRAK~iAetfLe~~---~~vne-----v--R-------~mlgfTGtYKG--k~iSimg~GmGipS~ 70 (236)
T COG0813 18 LMPGDPLRAKYIAETFLENA---VCVNE-----V--R-------GMLGFTGTYKG--KKISVMGHGMGIPSI 70 (236)
T ss_pred ECCCCCCHHHHHHHHHHHHH---HHHHH-----H--H-------HHHCCCCEECC--CEEEEEEECCCCCCH
T ss_conf 46899733789999987423---02232-----1--0-------00103413438--478998734887508
No 375
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=39.22 E-value=20 Score=13.86 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 9999999999988989999-------899899989998659995489985878898889999999986899829999067
Q gi|254780450|r 692 SVRRGSKRMLETRGYTVHE-------AFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGY 764 (803)
Q Consensus 692 ~~~~~~~~~L~~~g~~v~~-------a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~ 764 (803)
.....++..++..|.+|+. ..|-...+..+.+. .+|+|++- +.+-++..+++++++..-..+++..++.
T Consensus 147 ~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~--~pD~v~~~--~~~~~~~~~~~q~~~~G~~~~~~~~~~~ 222 (333)
T cd06358 147 GSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAAS--GADAVLST--LVGQDAVAFNRQFAAAGLRDRILRLSPL 222 (333)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHC--CCCEEEEC--CCCCHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 8999999999974985999982799997899999999974--98999993--7772399999999976999874666456
No 376
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=38.90 E-value=20 Score=13.82 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=19.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHH
Q ss_conf 569997698899999999999889899998998999
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDA 717 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~ea 717 (803)
.+|.++...-.-....+..|+..||+|..-..|..|
T Consensus 57 ~~ivl~C~~G~RS~~AA~~L~~~G~~v~~L~GG~~A 92 (95)
T cd01534 57 ARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLAA 92 (95)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 839998599987999999999869976995786123
No 377
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.58 E-value=21 Score=13.79 Aligned_cols=55 Identities=16% Similarity=0.245 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHCCCCCCEEEEECCCCC-CCHH--HHHHHHHHHCCCCCEEEEECCCHHH
Q ss_conf 9989998999865999548998587889-8889--9999999868998299990678589
Q gi|254780450|r 712 FSGTDALKVMEKLQGRVDIVISDVVMPE-MDGP--TLLRELRKTYPSLKFIFISGYAEDA 768 (803)
Q Consensus 712 ~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G~--~~~~~ir~~~~~~~ii~~t~~~~~~ 768 (803)
-+..+.+..+.+.+ --.++++|+.--| |.|+ ++++.+++. .++|+|+.-|-+.-.
T Consensus 152 ~~~~~~~~~~~~~g-~geil~TdI~rDGt~~G~d~~l~~~i~~~-~~ipiIasGGi~s~~ 209 (253)
T PRK01033 152 LDPVEFAKQAEELG-AGEIVLNSIDRDGVMKGYDLELIKKISSA-VKIPVTALGGAGSLD 209 (253)
T ss_pred CCHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHH
T ss_conf 55899999987469-77999987848897668799999999987-899999978989999
No 378
>PRK13131 consensus
Probab=38.53 E-value=21 Score=13.79 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=7.3
Q ss_pred HHHHHCCCCEEEEEECCC
Q ss_conf 999851675499996188
Q gi|254780450|r 623 YGIIRQSGGYILPESEVG 640 (803)
Q Consensus 623 ~~iv~~~gG~i~v~S~~g 640 (803)
+.|++...|.|.+-|..|
T Consensus 157 ~~i~~~s~GFiY~vs~~G 174 (257)
T PRK13131 157 EQVATHSQGYIYTLARSG 174 (257)
T ss_pred HHHHHCCCCEEEEEECCC
T ss_conf 999835897499984576
No 379
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=38.46 E-value=21 Score=13.78 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=12.5
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEEE
Q ss_conf 9999985259619999299968976
Q gi|254780450|r 161 NAIDYLDHSPVGFMSADHQGKILYI 185 (803)
Q Consensus 161 ~~~~~le~a~~gi~~~D~~g~i~~~ 185 (803)
.+.+.+...+.+.+.+|....+.-|
T Consensus 122 ~f~~~L~~~~i~l~vIDEAHCiSqW 146 (590)
T COG0514 122 RFLELLKRLPISLVAIDEAHCISQW 146 (590)
T ss_pred HHHHHHHHCCCCEEEECHHHHHHHC
T ss_conf 8999997088756996217777641
No 380
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=37.68 E-value=21 Score=13.70 Aligned_cols=86 Identities=22% Similarity=0.317 Sum_probs=48.3
Q ss_pred EEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEE------CCCCCCHHHH
Q ss_conf 6998716999999998742276520678857999998504210122455667889789999997------8866884454
Q gi|254780450|r 525 GVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVED------TGIGMSPDIM 598 (803)
Q Consensus 525 ~v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D------~G~GI~~~~~ 598 (803)
.|.+-+-..-+=++-++++ ...|-+|+|..++....+. .+.+.+.- +|+||+--..
T Consensus 155 avdg~~f~s~~e~i~~v~~------~k~Gd~VtI~~~r~~~~~~------------~~~~tl~~~~~~g~~giGIsl~d~ 216 (342)
T COG3480 155 AVDGEPFTSSDELIDYVSS------KKPGDEVTIDYERHNETPE------------IVTITLIKNDDNGKAGIGISLVDA 216 (342)
T ss_pred EECCEECCCHHHHHHHHHC------CCCCCEEEEEEEECCCCCC------------EEEEEEEEECCCCCCEEEEEEECC
T ss_conf 5589445788999999854------6889769999995169872------------689999960468864121586347
Q ss_pred HHCCCCC---CCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 2023222---210135776530388999998516
Q gi|254780450|r 599 EKIFEPF---FTTKKVGEGTGLGLSVVYGIIRQS 629 (803)
Q Consensus 599 ~~iFepF---~ttk~~g~GtGLGL~i~~~iv~~~ 629 (803)
.++--+| |.+.+.| |---||-.+-.|+.++
T Consensus 217 ~~v~~~~~V~~~~~~IG-GPSAGLMFSL~Iy~ql 249 (342)
T COG3480 217 PEVWAPPDVDFNTENIG-GPSAGLMFSLAIYDQL 249 (342)
T ss_pred CCCCCCCCEEEECCCCC-CCCHHHEEEHHHHHHC
T ss_conf 65456872675124479-9754333529888640
No 381
>PRK13113 consensus
Probab=37.60 E-value=21 Score=13.69 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=10.3
Q ss_pred HHHHHHCCCCEEEEEECCC
Q ss_conf 9999851675499996188
Q gi|254780450|r 622 VYGIIRQSGGYILPESEVG 640 (803)
Q Consensus 622 ~~~iv~~~gG~i~v~S~~g 640 (803)
.+.|++...|.|.+-|..|
T Consensus 163 i~~i~~~a~gFiY~Vs~~G 181 (263)
T PRK13113 163 LPKVLQNTSGFVYYVSITG 181 (263)
T ss_pred HHHHHHCCCCCEEEEECCC
T ss_conf 9999833898489983455
No 382
>PRK12608 transcription termination factor Rho; Provisional
Probab=36.99 E-value=22 Score=13.62 Aligned_cols=32 Identities=47% Similarity=0.647 Sum_probs=19.6
Q ss_pred HHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCC
Q ss_conf 52067885799999850421012245566788978999999788668844542023222
Q gi|254780450|r 547 AIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPF 605 (803)
Q Consensus 547 A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF 605 (803)
|-...+||++||-. -...|||.-|+ +-|||.|
T Consensus 265 ar~ie~gGSlTiia-----------------------TaLveTgs~mD----~~i~eef 296 (379)
T PRK12608 265 ARKIEEGGSLTILA-----------------------TALVDTGSRMD----EVIFEEF 296 (379)
T ss_pred CCCCCCCCCCEEEE-----------------------EEEECCCCCCC----HHHHHHH
T ss_conf 25777886632566-----------------------66322666434----5889996
No 383
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=36.98 E-value=22 Score=13.62 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=5.9
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 7169999999987
Q gi|254780450|r 529 DLSQFEQVLVNLC 541 (803)
Q Consensus 529 D~~~l~qvl~NLl 541 (803)
|+..+++.+.+.+
T Consensus 44 d~~~i~~~l~~~~ 56 (133)
T cd00758 44 DADSIRAALIEAS 56 (133)
T ss_pred CHHHHHHHHHHHH
T ss_conf 9999999999986
No 384
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=36.55 E-value=22 Score=13.58 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=59.7
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHC-CCC
Q ss_conf 898999989989998999865999548998587889-888--9999999986899829999067858998767605-798
Q gi|254780450|r 704 RGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKD-AKF 779 (803)
Q Consensus 704 ~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~-~~~ 779 (803)
.|++-.+..+..+..+.+.+.+ --.++.+|+.--| |.| +++++++.+.. ++|+++.-|-+...+-+.+... +..
T Consensus 139 ~GW~e~s~~~~~~l~~~~~~~g-~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~-~ipviaSGGv~s~~Di~~l~~~~G~~ 216 (241)
T COG0106 139 SGWQEDSGVELEELAKRLEEVG-LAHILYTDISRDGTLSGPNVDLVKELAEAV-DIPVIASGGVSSLDDIKALKELSGVE 216 (241)
T ss_pred CCCHHCCCCCHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCHHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 4610125678999999998578-776999851446645777879999999982-76789866868799999998557972
Q ss_pred E------EEECCCCHHHHHHHHH
Q ss_conf 0------7507979999999999
Q gi|254780450|r 780 S------FLSKPFSLKQLATSVH 796 (803)
Q Consensus 780 ~------~l~KP~~~~~L~~~i~ 796 (803)
+ ++..-|++.+..+.++
T Consensus 217 GvIvG~ALy~g~~~l~ea~~~~~ 239 (241)
T COG0106 217 GVIVGRALYEGKFTLEEALACVR 239 (241)
T ss_pred EEEEEHHHHCCCCCHHHHHHHHH
T ss_conf 89986689648978999999986
No 385
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=36.53 E-value=22 Score=13.57 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=32.9
Q ss_pred HHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHH---HCCC-CCEEEEECCCHH
Q ss_conf 999988989999899899989998659995489985878898-88999999998---6899-829999067858
Q gi|254780450|r 699 RMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEM-DGPTLLRELRK---TYPS-LKFIFISGYAED 767 (803)
Q Consensus 699 ~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m-~G~~~~~~ir~---~~~~-~~ii~~t~~~~~ 767 (803)
..|...|.--..+.+-.||++.++.... ..=|+ |-. +...++..++. ..++ +-|+-+||+.+.
T Consensus 318 s~L~~~gr~~y~~~td~Eal~A~~~lar-~EGIi-----PAlEssHAva~aik~A~~~~~~~~IvvnlSGrGdk 385 (392)
T PRK04346 318 AYLKDIGRAEYVSITDDEALEAFQLLSR-LEGII-----PALESSHALAYALKLAPTLPKDQIIVVNLSGRGDK 385 (392)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHH-CCCCE-----ECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 9998759727997388999999999998-05975-----56607999999999887649998899984788601
No 386
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=36.38 E-value=22 Score=13.56 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=6.3
Q ss_pred EEEEEECCCCCCC
Q ss_conf 0699831554444
Q gi|254780450|r 308 GRILRTNAHFLKL 320 (803)
Q Consensus 308 g~i~~~N~a~~~l 320 (803)
+++..+|..|.++
T Consensus 73 ~r~~~~~~nF~~l 85 (309)
T PRK00050 73 GRFTIVHGNFSDL 85 (309)
T ss_pred CCEEEEECCHHHH
T ss_conf 8289992779889
No 387
>pfam08415 NRPS Nonribosomal peptide synthase. This domain is found in bacterial nonribosomal peptide synthetases (NRPS). NRPS are megaenzymes organized as iterative modules, one for each amino acid to be built into the peptide product. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions. The NRPS domain tends to be found together with the condensation domain (pfam00668) and the phosphopantetheine binding domain (pfam00550).
Probab=36.36 E-value=22 Score=13.56 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHC----CCCCEEEEECCCHH
Q ss_conf 988899999999868----99829999067858
Q gi|254780450|r 739 EMDGPTLLRELRKTY----PSLKFIFISGYAED 767 (803)
Q Consensus 739 ~m~G~~~~~~ir~~~----~~~~ii~~t~~~~~ 767 (803)
..+|.+++|.+.+.. .-+|||+.|+...+
T Consensus 3 ~~sGV~vlRel~r~~~~~~~~~PVVFTS~L~~~ 35 (57)
T pfam08415 3 SVSGVEVLRELARRRGGAAALMPVVFTSALGLG 35 (57)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 546999999999972998875678887346887
No 388
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=36.34 E-value=22 Score=13.55 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=54.1
Q ss_pred ECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHC---CCCE----
Q ss_conf 89989998999865999548998587889-888--9999999986899829999067858998767605---7980----
Q gi|254780450|r 711 AFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKD---AKFS---- 780 (803)
Q Consensus 711 a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~---~~~~---- 780 (803)
--+..+.++.+.+.+. =.++++|+.--| |.| +++++.+++.. ++|+|+.-|-+.-.+-+.+... +..+
T Consensus 144 ~~~~~~~i~~~~~~G~-~eii~tdI~~DGt~~G~d~~l~~~i~~~~-~ipviasGGv~s~~Di~~L~~~~~~gv~gviiG 221 (241)
T PRK00748 144 GVDLEDLAKRFEDAGV-AAIIYTDISRDGTLSGPNVELTRELAAAT-PIPVIASGGVSSLDDIRALKALGPEGVEGVIVG 221 (241)
T ss_pred CCCHHHHHHHHHHCCC-CEEEEEEEECCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9748999999985587-56999887056854768999999999868-998999889999999999986031792489987
Q ss_pred --EEECCCCHHHHHHHHHH
Q ss_conf --75079799999999999
Q gi|254780450|r 781 --FLSKPFSLKQLATSVHE 797 (803)
Q Consensus 781 --~l~KP~~~~~L~~~i~~ 797 (803)
+..+=+++++....++.
T Consensus 222 ~Aly~g~i~l~eal~~~~~ 240 (241)
T PRK00748 222 KALYEGKFDLAEALACWQN 240 (241)
T ss_pred HHHHCCCCCHHHHHHHHHC
T ss_conf 8987799899999998652
No 389
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=36.31 E-value=22 Score=13.55 Aligned_cols=11 Identities=18% Similarity=0.296 Sum_probs=5.5
Q ss_pred CEEEEEECCCC
Q ss_conf 20699831554
Q gi|254780450|r 307 KGRILRTNAHF 317 (803)
Q Consensus 307 ~g~i~~~N~a~ 317 (803)
.|+++-+.+.+
T Consensus 152 Kg~i~g~~pGw 162 (332)
T PRK11119 152 KADLTGCNPGW 162 (332)
T ss_pred CEEEEECCCCC
T ss_conf 50288148872
No 390
>TIGR00519 asnASE_I L-asparaginases, type I; InterPro: IPR006033 Two related families of asparaginase are designated type I and type II according to the terminology in Escherichia coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This family includes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~80 residues in a conserved N-terminal region. These archaeal homologs are included in this family. ; GO: 0004067 asparaginase activity, 0006520 amino acid metabolic process.
Probab=35.85 E-value=16 Score=14.65 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=14.5
Q ss_pred CCEEEEECCCC---CCCHHHHHHHHHHH
Q ss_conf 54899858788---98889999999986
Q gi|254780450|r 728 VDIVISDVVMP---EMDGPTLLRELRKT 752 (803)
Q Consensus 728 ~dlil~D~~mp---~m~G~~~~~~ir~~ 752 (803)
.=+|++=.-|- .|++|+.=|+|.+.
T Consensus 276 vVVV~ttQCl~GrvnM~vY~tGR~l~~a 303 (347)
T TIGR00519 276 VVVVMTTQCLNGRVNMNVYSTGRRLLQA 303 (347)
T ss_pred EEEEEEEEECCCCEECCCCHHHHHHHHH
T ss_conf 1688754431585327622246999870
No 391
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=35.63 E-value=23 Score=13.48 Aligned_cols=82 Identities=17% Similarity=0.332 Sum_probs=50.8
Q ss_pred CHHHHHHHHHH--CCCCCCEEEEECCCCCC-CHHH--HHHHHHHHCCCCCEEEEECCCH-----HHH----HHHHHHCCC
Q ss_conf 98999899986--59995489985878898-8899--9999998689982999906785-----899----876760579
Q gi|254780450|r 713 SGTDALKVMEK--LQGRVDIVISDVVMPEM-DGPT--LLRELRKTYPSLKFIFISGYAE-----DAF----SKNLPKDAK 778 (803)
Q Consensus 713 ~g~eal~~~~~--~~~~~dlil~D~~mp~m-~G~~--~~~~ir~~~~~~~ii~~t~~~~-----~~~----~~~~~~~~~ 778 (803)
.|.+|++..++ .-+.=.++|+=|.--|. +||+ |++.+++. -++|||+..|=.. +++ ...++++..
T Consensus 211 tg~da~~Wa~~v~~lGAGEILLtsmD~DG~k~GYDl~L~~~v~e~-v~iPVIASGGAG~~eHf~EAF~~gkADAaLaAS~ 289 (312)
T TIGR00735 211 TGLDAVEWAKEVEKLGAGEILLTSMDRDGTKSGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASI 289 (312)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCCCCHHHHHHCCCHHHHHHHHH
T ss_conf 206799999998745885665303374678787768999989841-6656575078798530032221000345344355
Q ss_pred CEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 80750797999999999998513
Q gi|254780450|r 779 FSFLSKPFSLKQLATSVHELLQS 801 (803)
Q Consensus 779 ~~~l~KP~~~~~L~~~i~~~L~~ 801 (803)
+|| +=++..+| +++|..
T Consensus 290 FH~--~e~~I~ev----K~YL~~ 306 (312)
T TIGR00735 290 FHY--REITIGEV----KEYLAE 306 (312)
T ss_pred HHC--CCCCHHHH----HHHHHH
T ss_conf 510--45548999----999996
No 392
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=35.17 E-value=23 Score=13.43 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=15.4
Q ss_pred CCCEEEEECCCHHHHHHHH---HHHHHCCCEEE
Q ss_conf 8756999769889999999---99998898999
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSK---RMLETRGYTVH 709 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~---~~L~~~g~~v~ 709 (803)
.+.+||+|||--.....++ +.++..|.++.
T Consensus 140 ~Gk~VlIVDDViTTG~T~~e~ie~l~~~Ga~vv 172 (201)
T PRK02277 140 AGKRCVIVDDVITSGNTMKETIEYLKEHGAKPV 172 (201)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 787899997023778249999999998699799
No 393
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=34.80 E-value=23 Score=13.39 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=12.4
Q ss_pred HHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHC
Q ss_conf 999999986899829999067858998767605
Q gi|254780450|r 744 TLLRELRKTYPSLKFIFISGYAEDAFSKNLPKD 776 (803)
Q Consensus 744 ~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~ 776 (803)
++.+++|+.. ++||+.==|-+..++.+.....
T Consensus 195 ~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~ 226 (265)
T COG0159 195 ELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA 226 (265)
T ss_pred HHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHH
T ss_conf 9999999744-8973874486999999999976
No 394
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=34.72 E-value=24 Score=13.38 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=4.0
Q ss_pred HHHCCCCEEEE
Q ss_conf 98516754999
Q gi|254780450|r 625 IIRQSGGYILP 635 (803)
Q Consensus 625 iv~~~gG~i~v 635 (803)
-.+.+|+.+-+
T Consensus 101 ~A~~~g~~v~v 111 (216)
T PRK13306 101 VAKEFNGEIQI 111 (216)
T ss_pred HHHHHCCEEEE
T ss_conf 99980983699
No 395
>PRK08219 short chain dehydrogenase; Provisional
Probab=34.56 E-value=24 Score=13.36 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=6.7
Q ss_pred HHHHHHCCCCEEEEEEC
Q ss_conf 99998516754999961
Q gi|254780450|r 622 VYGIIRQSGGYILPESE 638 (803)
Q Consensus 622 ~~~iv~~~gG~i~v~S~ 638 (803)
++.+.+.....|.|.+-
T Consensus 152 ~~~L~~e~~~~IrVn~I 168 (226)
T PRK08219 152 ADALREEEAGNVRVTSV 168 (226)
T ss_pred HHHHHHHCCCCEEEEEE
T ss_conf 99999866998499999
No 396
>PRK08782 consensus
Probab=34.54 E-value=24 Score=13.36 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=46.3
Q ss_pred HHHHHCCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCC--CCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 99998898999-989989998999865999548998587889--888999999998689982999906785899876760
Q gi|254780450|r 699 RMLETRGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPE--MDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPK 775 (803)
Q Consensus 699 ~~L~~~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~--m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~ 775 (803)
+.....|.-+. -+.++.|....++. -++++=. -|. +.|...++.++.-.|+++++..-|-..+-.. .+..
T Consensus 104 ~~a~~~~i~~iPGv~TpSEi~~A~~~---G~~~vKl---FPA~~~Gg~~~lkal~~pfp~~~f~pTGGV~~~N~~-~yl~ 176 (219)
T PRK08782 104 RLLADAPIPAVPGAATPTELLTLMGL---GFRVCKL---FPATAVGGLQMLKGLAGPLSELKLCPTGGISETNAA-EFLS 176 (219)
T ss_pred HHHHHCCCCEECCCCCHHHHHHHHHC---CCCEEEE---CCCHHCCCHHHHHHHHCCCCCCEEEECCCCCHHHHH-HHHH
T ss_conf 99998199764785999999999987---9998997---773220849999998476999818767998987899-9980
Q ss_pred CC
Q ss_conf 57
Q gi|254780450|r 776 DA 777 (803)
Q Consensus 776 ~~ 777 (803)
.+
T Consensus 177 ~~ 178 (219)
T PRK08782 177 QP 178 (219)
T ss_pred CC
T ss_conf 79
No 397
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=34.28 E-value=24 Score=13.33 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=57.3
Q ss_pred EECCCHHHHHHHH------------HHHHHCCCEEEE----------ECCHHHHHHHHHHCCCCCCEEEEECCCCC----
Q ss_conf 9769889999999------------999988989999----------89989998999865999548998587889----
Q gi|254780450|r 686 LVEDEDSVRRGSK------------RMLETRGYTVHE----------AFSGTDALKVMEKLQGRVDIVISDVVMPE---- 739 (803)
Q Consensus 686 vvdD~~~~~~~~~------------~~L~~~g~~v~~----------a~~g~eal~~~~~~~~~~dlil~D~~mp~---- 739 (803)
.|-||+.+..+.. ..|...|..|.- -..-.+|++++... .+|.++++.-||-
T Consensus 118 fvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~--~~DalVl~vliPtpGtk 195 (275)
T COG1856 118 FVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNY--EPDALVLVVLIPTPGTK 195 (275)
T ss_pred ECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECEEEEEEECCCCCCCHHHHHHHHHCC--CCCEEEEEEEECCCCHH
T ss_conf 1277489999976886377778899999970942530599973168523338788998607--99739999981388501
Q ss_pred CC------H---HHHHHHHHHHCCCCCEEEEECCCHHHHH---HHHHHCCCCEEEECCCCH
Q ss_conf 88------8---9999999986899829999067858998---767605798075079799
Q gi|254780450|r 740 MD------G---PTLLRELRKTYPSLKFIFISGYAEDAFS---KNLPKDAKFSFLSKPFSL 788 (803)
Q Consensus 740 m~------G---~~~~~~ir~~~~~~~ii~~t~~~~~~~~---~~~~~~~~~~~l~KP~~~ 788 (803)
|. - ..+.+..|+..|+ |+++=-+....+.+ +......+.+-+++|..-
T Consensus 196 m~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd~It~P~~~ 255 (275)
T COG1856 196 MGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVDRITFPPRG 255 (275)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 0577976989999999999985899-74674147675367878888887188504459854
No 398
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.28 E-value=24 Score=13.33 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 716999999998742
Q gi|254780450|r 529 DLSQFEQVLVNLCVN 543 (803)
Q Consensus 529 D~~~l~qvl~NLl~N 543 (803)
++..+.+.|.+++.+
T Consensus 110 ~~~~~~~~l~~il~g 124 (305)
T PRK02649 110 YLNQLDEAIDQLLAG 124 (305)
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 988999999999829
No 399
>TIGR01605 PYST-D Plasmodium yoelii subtelomeric family PYST-D; InterPro: IPR006492 The proteins in this set represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. These genes are generally very short (ca. 50 residues). There are no obvious homologs to these genes in any other organism. .
Probab=34.20 E-value=21 Score=13.75 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999998742
Q gi|254780450|r 532 QFEQVLVNLCVN 543 (803)
Q Consensus 532 ~l~qvl~NLl~N 543 (803)
-|.-|+-|+.+|
T Consensus 19 ~LhLIFYN~~tn 30 (55)
T TIGR01605 19 TLHLIFYNVNTN 30 (55)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999765214
No 400
>KOG1251 consensus
Probab=33.99 E-value=24 Score=13.30 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=6.4
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 0342566415899999
Q gi|254780450|r 425 GGIAHDFNNVLTAILL 440 (803)
Q Consensus 425 a~isHelr~pL~~I~g 440 (803)
+.+-| +.+|=+..-|
T Consensus 221 g~I~~-l~tp~TIADG 235 (323)
T KOG1251 221 GKIVH-LDTPKTIADG 235 (323)
T ss_pred CCEEE-CCCCHHHHHH
T ss_conf 97476-5883355420
No 401
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=33.87 E-value=24 Score=13.29 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6999999998742
Q gi|254780450|r 531 SQFEQVLVNLCVN 543 (803)
Q Consensus 531 ~~l~qvl~NLl~N 543 (803)
..+-+.+.-|+++
T Consensus 204 eeiA~~i~~L~s~ 216 (235)
T PRK09009 204 EYVAQCLLGIIAN 216 (235)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999716
No 402
>TIGR02478 6PF1K_euk 6-phosphofructokinase; InterPro: IPR009161 Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (2.7.1.11 from EC) in which two tandem copies of the phosphofructokinase are found . Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal). Phosphofructokinase (PFK) catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate, which then enters the Embden-Meyerhof pathway. PFK is a key regulatory enzyme in glycolysis. For additional information please see , , .; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005737 cytoplasm.
Probab=33.63 E-value=4 Score=18.84 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=52.5
Q ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHH------CCCCCCEEE------EECCCCCC--C-HHH-HHHHHH-------HH
Q ss_conf 9999999889899998998999899986------599954899------85878898--8-899-999999-------86
Q gi|254780450|r 696 GSKRMLETRGYTVHEAFSGTDALKVMEK------LQGRVDIVI------SDVVMPEM--D-GPT-LLRELR-------KT 752 (803)
Q Consensus 696 ~~~~~L~~~g~~v~~a~~g~eal~~~~~------~~~~~dlil------~D~~mp~m--~-G~~-~~~~ir-------~~ 752 (803)
.++..|+...++-..---|.||.+.+.+ .-|.|-+=+ .+=+.||- + |-| ++..|- +.
T Consensus 490 ~iA~~f~~~kiDgL~IIGGFEAf~al~qL~~aR~~YP~F~IPmv~iPATISNNVPGTe~SLG~DTaLN~i~~~cD~IkqS 569 (777)
T TIGR02478 490 EIAYKFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNEITEYCDKIKQS 569 (777)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999986098879997603688999999999861885578857866601077872443022015777899872632235
Q ss_pred CCC--CCEEEE------ECCCHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHHH
Q ss_conf 899--829999------067858998767605798075-079799999999999
Q gi|254780450|r 753 YPS--LKFIFI------SGYAEDAFSKNLPKDAKFSFL-SKPFSLKQLATSVHE 797 (803)
Q Consensus 753 ~~~--~~ii~~------t~~~~~~~~~~~~~~~~~~~l-~KP~~~~~L~~~i~~ 797 (803)
... -++..+ |||- +..-.+..+..+.|+ .-||+++.|.+=|..
T Consensus 570 A~askrRvFVvEtmGG~sGYL--At~~GLa~GA~a~Yi~Eegi~l~~L~~Di~~ 621 (777)
T TIGR02478 570 ASASKRRVFVVETMGGYSGYL--ATMAGLATGADAAYIPEEGISLKDLQEDIEH 621 (777)
T ss_pred CCCCCCCEEEEEEECCCHHHH--HHHHHHHHCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 301147569999708971689--9999886462478864789788999999999
No 403
>TIGR02991 ectoine_eutB ectoine utilization protein EutB; InterPro: IPR014333 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine. Members resemble threonine dehydratases. .
Probab=33.32 E-value=25 Score=13.23 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=52.7
Q ss_pred HHHHHHHHHCC--------CEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99999999889--------89999899899989998659995489985878898-8899999999868998299990678
Q gi|254780450|r 695 RGSKRMLETRG--------YTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEM-DGPTLLRELRKTYPSLKFIFISGYA 765 (803)
Q Consensus 695 ~~~~~~L~~~g--------~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m-~G~~~~~~ir~~~~~~~ii~~t~~~ 765 (803)
+=+.++.+..| |.-+.|..|.-+|+++++- |...+||..+.=-|+ .| ++-.++..+|.++||-+|=--
T Consensus 128 ~EVeRLv~~~Gl~~~PPFD~~~i~AGQGT~gLE~~~~~-Pd~~~vLVplSGGGL~~G--va~avKa~~P~~rVIG~sMeR 204 (318)
T TIGR02991 128 EEVERLVAERGLVMLPPFDHPDIVAGQGTLGLEVVEQM-PDLATVLVPLSGGGLASG--VAVAVKALRPDTRVIGVSMER 204 (318)
T ss_pred HHHHHHHHCCCCEEECCCCCCCCEECCCHHHHHHHHCC-CCCEEEEEECCCCHHHHH--HHHHHHCCCCCCEEEEEECCH
T ss_conf 99999986189487179897100105743667786307-850168774157646788--998863379972588741101
Q ss_pred HHHHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf 58998767605798075079799999
Q gi|254780450|r 766 EDAFSKNLPKDAKFSFLSKPFSLKQL 791 (803)
Q Consensus 766 ~~~~~~~~~~~~~~~~l~KP~~~~~L 791 (803)
--++...+.+ + +|+...++
T Consensus 205 GAAM~~s~~A----G---rPv~V~E~ 223 (318)
T TIGR02991 205 GAAMKASLKA----G---RPVLVEEL 223 (318)
T ss_pred HHHHHHHHHC----C---CCEEECCC
T ss_conf 3799999845----8---96354245
No 404
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=33.15 E-value=25 Score=13.21 Aligned_cols=28 Identities=4% Similarity=0.059 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEECEEEEEE
Q ss_conf 9999999999983467509998502069983
Q gi|254780450|r 283 GTIANMRFNRFFNNIPMAIASIDKKGRILRT 313 (803)
Q Consensus 283 l~~se~rl~~i~e~~p~~I~~~d~~g~i~~~ 313 (803)
+..-..+.+.+++++-. .+.+.|.++|.
T Consensus 214 ~~~~~~~Q~~iL~~A~~---~LkpGG~LVYS 241 (471)
T PRK11933 214 NLEIAATQRELIESAFH---ALKPGGTLVYS 241 (471)
T ss_pred HHHHHHHHHHHHHHHHH---HCCCCCEEEEE
T ss_conf 99999999999999998---73889689998
No 405
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=33.08 E-value=25 Score=13.20 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=47.7
Q ss_pred CEEEEECCH--HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 899998998--999899986599954899858788988899999999868998299990678589987676057980750
Q gi|254780450|r 706 YTVHEAFSG--TDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSFLS 783 (803)
Q Consensus 706 ~~v~~a~~g--~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l~ 783 (803)
-.|.-..+- .+--.+++. .|++++=- .-+-=|..+++++ .-++|||+.-.-+- .+ ....+..|||.
T Consensus 280 ~~V~Flg~~~~~~~~~l~~~----ad~~v~~s-~~Egfg~v~lEAm---a~G~PVVasd~gG~---~E-~I~~g~~G~Lv 347 (392)
T cd03805 280 DQVIFLPSISDSQKELLLSS----ARALLYTP-SNEHFGIVPLEAM---YAGKPVIACNSGGP---LE-TVVDGETGFLC 347 (392)
T ss_pred CEEEECCCCCHHHHHHHHHH----CCEEEECC-CCCCCCHHHHHHH---HCCCCEEEECCCCC---HH-HEECCCEEEEE
T ss_conf 85999888996999999985----97999887-4346660799999---77999999489986---76-64579669995
Q ss_pred CCCCHHHHHHHHHHHHCCC
Q ss_conf 7979999999999985137
Q gi|254780450|r 784 KPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 784 KP~~~~~L~~~i~~~L~~~ 802 (803)
+| +.++|.++|.++|..+
T Consensus 348 ~~-d~~~la~~i~~ll~d~ 365 (392)
T cd03805 348 EP-TPEEFAEAMLKLANDP 365 (392)
T ss_pred CC-CHHHHHHHHHHHHCCH
T ss_conf 95-9999999999997899
No 406
>PRK07589 ornithine cyclodeaminase; Validated
Probab=32.66 E-value=25 Score=13.15 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=5.5
Q ss_pred EEECCCCHHHHHHHH
Q ss_conf 750797999999999
Q gi|254780450|r 781 FLSKPFSLKQLATSV 795 (803)
Q Consensus 781 ~l~KP~~~~~L~~~i 795 (803)
.++.|=+++.|...+
T Consensus 321 l~~~~~dpkdl~~~~ 335 (346)
T PRK07589 321 LVPDPDDPKDLFGML 335 (346)
T ss_pred CCCCCCCCCCHHHHH
T ss_conf 134899974878875
No 407
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=32.63 E-value=25 Score=13.15 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=54.2
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCC---------------CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 99999999988989999899899989998659---------------995489985878898889999999986899829
Q gi|254780450|r 694 RRGSKRMLETRGYTVHEAFSGTDALKVMEKLQ---------------GRVDIVISDVVMPEMDGPTLLRELRKTYPSLKF 758 (803)
Q Consensus 694 ~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~---------------~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~i 758 (803)
-..+.+.+...+.+|+.+.-+ ... .....+ ++.|++|+- .|.-.+.+ .++.++|.
T Consensus 254 ~~~~~~a~~~l~~~vi~~~~~-~~~-~~~~~p~n~~v~~~~p~~~~l~~ad~vI~h------GG~gtt~e--aL~~gvP~ 323 (406)
T COG1819 254 LAIVLEALADLDVRVIVSLGG-ARD-TLVNVPDNVIVADYVPQLELLPRADAVIHH------GGAGTTSE--ALYAGVPL 323 (406)
T ss_pred HHHHHHHHHCCCCEEEEECCC-CCC-CCCCCCCCEEEECCCCHHHHHHCCCEEEEC------CCHHHHHH--HHHCCCCE
T ss_conf 999999985499649997367-642-346888774786157589887407989917------98579999--99739998
Q ss_pred EEEECCCHHHHHHHHHHCCCCE-EEEC-CCCHHHHHHHHHHHHCCC
Q ss_conf 9990678589987676057980-7507-979999999999985137
Q gi|254780450|r 759 IFISGYAEDAFSKNLPKDAKFS-FLSK-PFSLKQLATSVHELLQSD 802 (803)
Q Consensus 759 i~~t~~~~~~~~~~~~~~~~~~-~l~K-P~~~~~L~~~i~~~L~~~ 802 (803)
|.+-...+........+..+.+ .|.+ +.+...|.++|+++|+.+
T Consensus 324 vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 324 VVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCH
T ss_conf 9827873078799999974988312756588899999999996739
No 408
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=32.60 E-value=23 Score=13.45 Aligned_cols=18 Identities=11% Similarity=-0.001 Sum_probs=9.1
Q ss_pred HHHHHHCCCCHHHHCCCC
Q ss_conf 679864299967804563
Q gi|254780450|r 187 ATLAEWIGIDLTTFTSKS 204 (803)
Q Consensus 187 ~~~~~llG~~~~e~~~~~ 204 (803)
+...+-+|++.+.+...+
T Consensus 98 pg~~~rlGl~ye~L~~~N 115 (405)
T PRK03525 98 GPAFARRGITDEVLWQHN 115 (405)
T ss_pred CHHHHHHCCCHHHHHCCC
T ss_conf 428988346576886069
No 409
>PRK07577 short chain dehydrogenase; Provisional
Probab=32.49 E-value=26 Score=13.14 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 716999999998742
Q gi|254780450|r 529 DLSQFEQVLVNLCVN 543 (803)
Q Consensus 529 D~~~l~qvl~NLl~N 543 (803)
+|..+-+++.-|+++
T Consensus 202 ~p~eia~~v~fL~s~ 216 (234)
T PRK07577 202 TPEEVAAAIAFLLSD 216 (234)
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 899999999999585
No 410
>PRK11761 cysM cysteine synthase B; Provisional
Probab=32.37 E-value=26 Score=13.12 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=21.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHC
Q ss_conf 99976988999999999998898999--989989998999865
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVH--EAFSGTDALKVMEKL 724 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~--~a~~g~eal~~~~~~ 724 (803)
+..|+|++. ...++.+.+.-|.-|- .+.+-.-|+++.++.
T Consensus 231 ~~~V~d~ea-~~~~r~La~~eGi~vG~Ssga~laaa~~~a~~~ 272 (296)
T PRK11761 231 VLDISQAEA-ENTMRRLAREEGIFCGVSSGGAVAAALRVAREV 272 (296)
T ss_pred EEECCHHHH-HHHHHHHHHHHCCEEEHHHHHHHHHHHHHHHHC
T ss_conf 998488999-999999999849087178999999999999888
No 411
>KOG1996 consensus
Probab=32.37 E-value=24 Score=13.38 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=13.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 01357765303889999985167
Q gi|254780450|r 608 TKKVGEGTGLGLSVVYGIIRQSG 630 (803)
Q Consensus 608 tk~~g~GtGLGL~i~~~iv~~~g 630 (803)
|..+|.++|=||.+.+.|+..||
T Consensus 201 tn~fg~~~gg~ltvA~~im~k~G 223 (378)
T KOG1996 201 TNSFGANTGGGLTVAHKIMQKYG 223 (378)
T ss_pred CCHHHHHCCCCHHHHHHHHHHHC
T ss_conf 20354413663169999999848
No 412
>COG5643 Protein containing a metal-binding domain shared with formylmethanofuran dehydrogenase subunit E [General function prediction only]
Probab=32.04 E-value=26 Score=13.09 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=36.5
Q ss_pred EEEECCC---CCCHHHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHC-----------CCCEEEEEE---------CCC
Q ss_conf 9997886---688445420-2322221013577653038899999851-----------675499996---------188
Q gi|254780450|r 585 EVEDTGI---GMSPDIMEK-IFEPFFTTKKVGEGTGLGLSVVYGIIRQ-----------SGGYILPES---------EVG 640 (803)
Q Consensus 585 ~V~D~G~---GI~~~~~~~-iFepF~ttk~~g~GtGLGL~i~~~iv~~-----------~gG~i~v~S---------~~g 640 (803)
.|.|-|+ ++|-+.+.. +|-. ....|.-=|--|.+-|-+. .|-.||+.- +||
T Consensus 500 ~i~~ig~~~~d~pyd~L~~~lfHn-----H~CpGvssGy~iakyi~enyPl~d~~~y~~~g~~i~cKdda~~~~~~~tpg 574 (685)
T COG5643 500 RINDIGPYAIDPPYDLLGCFLFHN-----HFCPGVSSGYLIAKYIFENYPLKDGESYVWFGVPIWCKDDAVLYLLDVTPG 574 (685)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHC-----CCCCCCCCCHHHHHHHHHCCCCCCCCEEEEECCCEEECCCHHHEEECCCCC
T ss_conf 788640112589677867677650-----358888763112876752377568844899646168735632224123689
Q ss_pred CCEEEEEEEC
Q ss_conf 9429999943
Q gi|254780450|r 641 KGTIFRIFLP 650 (803)
Q Consensus 641 ~Gt~F~i~lP 650 (803)
+|+.|...||
T Consensus 575 ~g~~fv~~l~ 584 (685)
T COG5643 575 TGGYFVMRLP 584 (685)
T ss_pred CCCEEEECCC
T ss_conf 7875222388
No 413
>KOG1004 consensus
Probab=31.74 E-value=26 Score=13.05 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCHH
Q ss_conf 245566788978999999788668844
Q gi|254780450|r 570 TFNYSDLPTKDMVLVEVEDTGIGMSPD 596 (803)
Q Consensus 570 ~~~~~~~~~~~~v~i~V~D~G~GI~~~ 596 (803)
+...+.+.-||.+.-.|.|++.-+.||
T Consensus 103 krNrPnl~vGdliyakv~~a~~~~Epe 129 (230)
T KOG1004 103 KRNRPNLQVGDLIYAKVVDANKDMEPE 129 (230)
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCC
T ss_conf 357886431657899987067776640
No 414
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=31.71 E-value=16 Score=14.63 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=11.8
Q ss_pred CCCCEEEEEEECEEEEE
Q ss_conf 46750999850206998
Q gi|254780450|r 296 NIPMAIASIDKKGRILR 312 (803)
Q Consensus 296 ~~p~~I~~~d~~g~i~~ 312 (803)
..|+..|...+.|.++.
T Consensus 241 ~LPMSFFsTRRtGEI~S 257 (710)
T TIGR01193 241 ELPMSFFSTRRTGEIVS 257 (710)
T ss_pred HCCCCCCCCCEEEEEEE
T ss_conf 18888526460221364
No 415
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=31.47 E-value=26 Score=13.02 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=64.1
Q ss_pred EEEECCCHHHHHHHHHHHHHCCC--EEEEE---CCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 99976988999999999998898--99998---99899989998659995489985878898889999999986899829
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGY--TVHEA---FSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKF 758 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~--~v~~a---~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~i 758 (803)
.++|=|-+. +.-+..+.+.+|. .|.-. .|+.+-+..+-. ..|+.++--..-| =|..+++++- -++||
T Consensus 215 L~IvG~G~~-~~~L~~~i~~l~l~~~V~flG~~~np~~~l~~~~~---~adifVl~S~~EG-fp~vllEAma---~G~Pv 286 (361)
T PRK09922 215 LHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSNPWEVVQQKIK---NVSALLLTSKFEG-FPMTLLEAMS---YGIPC 286 (361)
T ss_pred EEEEEEECC-HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHH---HCCEEEECCCCCC-CCCHHHHHHH---HCCCE
T ss_conf 999984388-99999999983898738990675987999999985---1349996475568-8728999999---59989
Q ss_pred EEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 99906785899876760579807507979999999999985137
Q gi|254780450|r 759 IFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 759 i~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
|+.-.-+. .......+..|||-+|-+.++|.++|.++++.+
T Consensus 287 Iatd~~~G---~~EiI~dg~nG~Lv~~~d~~~la~~i~~li~~e 327 (361)
T PRK09922 287 ISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 327 (361)
T ss_pred EEECCCCC---CHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCH
T ss_conf 99759999---088715898379977999999999999998482
No 416
>PRK13120 consensus
Probab=31.19 E-value=27 Score=12.99 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=13.2
Q ss_pred HHHHHHCCCCEEEEEECCC
Q ss_conf 9999851675499996188
Q gi|254780450|r 622 VYGIIRQSGGYILPESEVG 640 (803)
Q Consensus 622 ~~~iv~~~gG~i~v~S~~g 640 (803)
.+.|++.-.|.|.+-|..|
T Consensus 167 i~~I~~~s~GFvY~VS~~G 185 (285)
T PRK13120 167 IEAIGRVARGYVYYVSLKG 185 (285)
T ss_pred HHHHHHHCCCCEEEEECCC
T ss_conf 9999950898189986565
No 417
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=31.04 E-value=27 Score=12.97 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=62.4
Q ss_pred CCHH-HHHHHHHHHHHCCCEEEEEC---CHHHHHHHHHHCCCCCCEEEEECCCCC-CC-HHHHHHHHHHHCC-CCCEEEE
Q ss_conf 9889-99999999998898999989---989998999865999548998587889-88-8999999998689-9829999
Q gi|254780450|r 689 DEDS-VRRGSKRMLETRGYTVHEAF---SGTDALKVMEKLQGRVDIVISDVVMPE-MD-GPTLLRELRKTYP-SLKFIFI 761 (803)
Q Consensus 689 D~~~-~~~~~~~~L~~~g~~v~~a~---~g~eal~~~~~~~~~~dlil~D~~mp~-m~-G~~~~~~ir~~~~-~~~ii~~ 761 (803)
|-++ -..+++.+|+..||+|+... ++.+-++.+.+. ..|+|-+=..|-. |. =-++...+++..- ++||+ +
T Consensus 10 DgHd~G~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e--~ad~IglSsL~g~h~~~~~~l~~~L~e~G~~di~v~-v 86 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQE--DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVV-G 86 (122)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEE-E
T ss_conf 6228779999999997897699679988999999999973--998999964655447899999999997699984699-9
Q ss_pred ECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 0678589987676057980750797999999999
Q gi|254780450|r 762 SGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSV 795 (803)
Q Consensus 762 t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i 795 (803)
-|.--+.+.+.+.+.+.......==++.+..+.+
T Consensus 87 GG~Ip~~d~~~l~~~Gv~~vf~pgt~~~~iv~~i 120 (122)
T cd02071 87 GGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf 4564989999999779988989588999999997
No 418
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=30.97 E-value=27 Score=12.97 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=26.7
Q ss_pred CEEEEEHHHHHHHHHHHHHHHHC-----CCCCEEEEEECCCCCEEEEEC---HHHHHHHHHHHHHHH
Q ss_conf 43585346789999999987503-----568169998148972269987---169999999987422
Q gi|254780450|r 486 RLTVLNLTEVIGNLRMMIQKLIS-----EPPQVKLTVDYERDLWGVKTD---LSQFEQVLVNLCVNA 544 (803)
Q Consensus 486 ~~~~~~l~~~i~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~v~~D---~~~l~qvl~NLl~NA 544 (803)
||.-=|+.+++..+..++....+ ++.++ + ++.+-.+.|| ..++++|+.+|..|-
T Consensus 290 RPDSGDp~~ii~~~l~~L~~~FG~t~N~KGYKv-L----~~~vriIqGDgI~~~~i~~Il~~l~~~G 351 (407)
T cd01569 290 RPDSGDPVDIICGVLEILGEIFGGTVNSKGYKV-L----NPHVRIIQGDGITLERIEEILERLKAKG 351 (407)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHCCEECCCCEEE-C----CCCEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 479998378899899999998487215775161-4----7742378548869999999999999779
No 419
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=30.78 E-value=27 Score=12.94 Aligned_cols=36 Identities=28% Similarity=0.619 Sum_probs=18.2
Q ss_pred CCEEEEECCCCCCC-H------------HHHHHHHHHHCCCCCEEEEEC
Q ss_conf 54899858788988-8------------999999998689982999906
Q gi|254780450|r 728 VDIVISDVVMPEMD-G------------PTLLRELRKTYPSLKFIFISG 763 (803)
Q Consensus 728 ~dlil~D~~mp~m~-G------------~~~~~~ir~~~~~~~ii~~t~ 763 (803)
+|+|+.-++.-+++ + ..+++.+|+.+|+.+|+.+++
T Consensus 56 Pd~vvi~lGtND~~~~~~~~~~~f~~~y~~~i~~ir~~~p~a~i~~~~~ 104 (169)
T cd01831 56 PDLVVINLGTNDFSTGNNPPGEDFTNAYVEFIEELRKRYPDAPIVLMLG 104 (169)
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9889997776678888997889999999999999998889987999856
No 420
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=30.70 E-value=27 Score=12.94 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=46.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 6999769889999999999988989--99989989998999865999548998587889888999999998689982999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYT--VHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~--v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+|.-+|-++......+..|+.+|+. .....||.+... ...+||.|+..-..|.+- ..+..++ .++-++|+
T Consensus 100 ~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~----~~apfD~Iiv~aa~~~iP-~~l~~qL---~~gGrLv~ 171 (205)
T pfam01135 100 RVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWP----EFAPYDAIHVGAAAPEIP-EALIDQL---KEGGRLVI 171 (205)
T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC----CCCCCCEEEEEEECCCCC-HHHHHHC---CCCCEEEE
T ss_conf 699983589999999999998488865898456455883----339805899975067688-9999962---87978999
Q ss_pred EEC
Q ss_conf 906
Q gi|254780450|r 761 ISG 763 (803)
Q Consensus 761 ~t~ 763 (803)
.-|
T Consensus 172 pvg 174 (205)
T pfam01135 172 PVG 174 (205)
T ss_pred EEC
T ss_conf 987
No 421
>TIGR00749 glk glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP .; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis.
Probab=30.50 E-value=13 Score=15.22 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=42.1
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCC---CE--EEEECCC--CCCCHHHHHHHHHHHCCCCCE
Q ss_conf 9769889999999999988989999899899989998659995---48--9985878--898889999999986899829
Q gi|254780450|r 686 LVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRV---DI--VISDVVM--PEMDGPTLLRELRKTYPSLKF 758 (803)
Q Consensus 686 vvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~---dl--il~D~~m--p~m~G~~~~~~ir~~~~~~~i 758 (803)
+-+|++.-|..+..++..+| +.-|.-||++... ++=| -+ =++|+-= |=|-+++-=-++++.-.++||
T Consensus 255 L~g~~~~cr~al~lFc~~~G-----~~agnlAL~Lg~r-GGvy~aGGI~Prfi~~fk~s~Fra~FedKGRm~~~~~~IPV 328 (342)
T TIGR00749 255 LEGDDVLCRRALELFCSILG-----ALAGNLALKLGAR-GGVYVAGGIVPRFIEYFKKSSFRAAFEDKGRMKSYLADIPV 328 (342)
T ss_pred HCCCCHHHHHHHHHHHHHHH-----HHHHHHHHHHCCC-CCEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCE
T ss_conf 35883578889999999986-----5588899874288-75487444043678876068854344555157887425985
Q ss_pred EEE
Q ss_conf 999
Q gi|254780450|r 759 IFI 761 (803)
Q Consensus 759 i~~ 761 (803)
-++
T Consensus 329 ~vv 331 (342)
T TIGR00749 329 YVV 331 (342)
T ss_pred EEE
T ss_conf 899
No 422
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=30.38 E-value=28 Score=12.90 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEE
Q ss_conf 989998999865999548998587889-888--9999999986899829999067858998767605798075
Q gi|254780450|r 713 SGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSFL 782 (803)
Q Consensus 713 ~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l 782 (803)
+..+-++.+....+ .++++|+..-| |.| +++++.+++.. ++|+|+.-|-+.-.+-+.+...+..+++
T Consensus 147 ~~~~~~~~~~~~~~--eii~t~Id~dGt~~G~d~~l~~~i~~~~-~~pvi~sGGv~s~~di~~l~~~g~~gvi 216 (233)
T cd04723 147 GPEELLRRLAKWPE--ELIVLDIDRVGSGQGPDLELLERLAARA-DIPVIAAGGVRSVEDLELLKKLGASGAL 216 (233)
T ss_pred CHHHHHHHHHHHCC--EEEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 89999999996589--5999864344656777999999999868-9989998899999999999978998999
No 423
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=30.25 E-value=25 Score=13.23 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCCEEEEEE
Q ss_conf 38899999851675499996
Q gi|254780450|r 618 GLSVVYGIIRQSGGYILPES 637 (803)
Q Consensus 618 GL~i~~~iv~~~gG~i~v~S 637 (803)
-|+-..++.+.+.-.|=++.
T Consensus 478 ~l~~L~~~le~~~~a~V~~e 497 (527)
T TIGR01137 478 KLADLSKFLEKNSSAIVVEE 497 (527)
T ss_pred CHHHHHHHHCCCCCEEEEEC
T ss_conf 18999998516961899707
No 424
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=29.98 E-value=28 Score=12.85 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEC---CCCCEEEEEEE
Q ss_conf 76530388999998516754999961---88942999994
Q gi|254780450|r 613 EGTGLGLSVVYGIIRQSGGYILPESE---VGKGTIFRIFL 649 (803)
Q Consensus 613 ~GtGLGL~i~~~iv~~~gG~i~v~S~---~g~Gt~F~i~l 649 (803)
+|+|+ ...++ ..+|-|.+... ..+|....|++
T Consensus 369 qgS~~----lssl~-~Angli~ip~~~~~~~~Ge~V~v~~ 403 (411)
T PRK10680 369 QGSHI----FSSFS-LGNCFIVLERERGNVEVGEWVEVEP 403 (411)
T ss_pred CCHHH----HHHHH-HCCEEEEECCCCCCCCCCCEEEEEE
T ss_conf 84098----99998-7969999889988679999899998
No 425
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=29.37 E-value=29 Score=12.78 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 8999999998689982999906785899876760579807507979999999999985137
Q gi|254780450|r 742 GPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 742 G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
|..+++++ ..++|||+....+- . .....+..|+|-+|-++++|.++|++++..+
T Consensus 274 Gi~~vEAm---a~G~PvIa~~~gG~---~-e~v~~g~tG~l~~~~~~~~la~ai~~~~~~~ 327 (351)
T cd03804 274 GIVPVEAM---ASGTPVIAYGKGGA---L-ETVIDGVTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred CCHHHHHH---HCCCCEEEECCCCC---C-CEECCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 97599999---76998898289997---5-5015899789959899999999999998595
No 426
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=29.33 E-value=29 Score=12.78 Aligned_cols=58 Identities=24% Similarity=0.200 Sum_probs=45.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 8756999769889999999999988989999899899989998659995489985878898
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEM 740 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m 740 (803)
.+..+.||=....+..-++.+|.+.|++|..+++-..-++..-. .-|+|+.-.+=|++
T Consensus 27 ~Gk~vvVvGrS~~VG~Pla~lL~~~~atVt~~hs~t~~l~~~~~---~ADIvI~a~G~p~~ 84 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH---DADVVVVGSPKPEK 84 (140)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH---HCCEEEECCCCCCC
T ss_conf 99999999998124999999999788989994699959899852---34999981687672
No 427
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.28 E-value=29 Score=12.77 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=45.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 756999769889999999999988989999899899989998659995489985878898
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEM 740 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m 740 (803)
+..+.||=....+..-++.+|...|++|..+++-..-|..+-. ..|+|+.-.+-|++
T Consensus 159 Gk~vvVvGrS~iVGkPla~lL~~~~atVTichs~T~nl~~~~~---~ADIvIsA~G~p~~ 215 (288)
T PRK10792 159 GLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVE---NADLLIVAVGKPGF 215 (288)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHH---HCCEEEEECCCCCC
T ss_conf 8889995676634389999998669959862578878899998---57897640488675
No 428
>TIGR02870 spore_II_D stage II sporulation protein D; InterPro: IPR014225 This entry contains the stage II sporulation protein D (SpoIID), which is a protein involved in the endospore formation program. SpoIID is one of the three genes (spoIID, spoIIM and spoIIP, , , ), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan - mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the engulfment stage. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers .
Probab=29.07 E-value=29 Score=12.75 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=5.0
Q ss_pred CCCCCCCCCCCHHH
Q ss_conf 10135776530388
Q gi|254780450|r 607 TTKKVGEGTGLGLS 620 (803)
Q Consensus 607 ttk~~g~GtGLGL~ 620 (803)
+|+++|+ |+|||
T Consensus 317 ~t~GyGH--GVGMS 328 (358)
T TIGR02870 317 TTIGYGH--GVGMS 328 (358)
T ss_pred EEECCCC--CCCHH
T ss_conf 9871545--55523
No 429
>PRK07069 short chain dehydrogenase; Validated
Probab=28.87 E-value=29 Score=12.73 Aligned_cols=20 Identities=20% Similarity=0.014 Sum_probs=8.0
Q ss_pred HHHHHHHHHCC---CCEEEEEEC
Q ss_conf 88999998516---754999961
Q gi|254780450|r 619 LSVVYGIIRQS---GGYILPESE 638 (803)
Q Consensus 619 L~i~~~iv~~~---gG~i~v~S~ 638 (803)
..++|.+...+ |..|.|.+-
T Consensus 159 ~~ltk~lA~el~~~gi~IrvN~i 181 (251)
T PRK07069 159 ASLTKSIALDCARRGLDVRCNSI 181 (251)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 99999999998771996899998
No 430
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.82 E-value=29 Score=12.72 Aligned_cols=70 Identities=11% Similarity=0.238 Sum_probs=46.9
Q ss_pred HHHHHCCCEEE-EECCHHHHHHHHHHCCCCCCEEEEECCCCC--CCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 99998898999-989989998999865999548998587889--888999999998689982999906785899876760
Q gi|254780450|r 699 RMLETRGYTVH-EAFSGTDALKVMEKLQGRVDIVISDVVMPE--MDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPK 775 (803)
Q Consensus 699 ~~L~~~g~~v~-~a~~g~eal~~~~~~~~~~dlil~D~~mp~--m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~ 775 (803)
+.-...|.-+. -+.++.|+...++. -+|++=. -|. +.|...++.++.-.|++|++.+-|-..+-. ..+.+
T Consensus 102 ~~a~~~~i~~iPGv~TpsEi~~A~~~---G~~~vK~---FPA~~~gG~~~lkal~~p~p~i~~~ptGGV~~~N~-~~yl~ 174 (212)
T PRK05718 102 KACQDGPIPLIPGVNTPSELMLAMEL---GLRTFKF---FPAEASGGVKMLKALAGPFSDVRFCPTGGISPANY-RDYLA 174 (212)
T ss_pred HHHHHCCCCEECCCCCHHHHHHHHHC---CCCEEEE---CCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHH-HHHHC
T ss_conf 99998199765786999999999987---9998997---87610179999999856589982886599898789-99981
No 431
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=28.80 E-value=25 Score=13.16 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=5.1
Q ss_pred EEECC-CCCCHHHHH
Q ss_conf 99788-668844542
Q gi|254780450|r 586 VEDTG-IGMSPDIME 599 (803)
Q Consensus 586 V~D~G-~GI~~~~~~ 599 (803)
|+|+| .+++.|.+.
T Consensus 1552 VSd~Gk~~vAkEYL~ 1566 (1843)
T TIGR01054 1552 VSDVGKMRVAKEYLE 1566 (1843)
T ss_pred ECCCCCEEEEHHHHH
T ss_conf 345466000035776
No 432
>KOG0685 consensus
Probab=28.52 E-value=30 Score=12.68 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=33.9
Q ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 06788579999985042101224556678897899999978866884454202322221013
Q gi|254780450|r 549 MLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTTKK 610 (803)
Q Consensus 549 ~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ttk~ 610 (803)
.+.+.|.|.+++.+.+. -..|+|.++|+ -|.-.++..++|.|=..+.+
T Consensus 256 ~~~~~~~v~l~c~dg~v-----------~~adhVIvTvs---LGvLk~~h~~lF~P~LP~~K 303 (498)
T KOG0685 256 NWKNTGEVKLRCSDGEV-----------FHADHVIVTVS---LGVLKEQHHKLFVPPLPAEK 303 (498)
T ss_pred CCCCCCCEEEEEECCCE-----------EECCEEEEEEE---CHHHHHHHHHHCCCCCCHHH
T ss_conf 46888857999757968-----------76467999852---11046554420589997899
No 433
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.51 E-value=30 Score=12.68 Aligned_cols=90 Identities=12% Similarity=0.136 Sum_probs=53.7
Q ss_pred EEEECCCHH-----HHHHHHHHHHHCCC--EE-EEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999769889-----99999999998898--99-99899899989998659995489985878898889999999986899
Q gi|254780450|r 684 VLLVEDEDS-----VRRGSKRMLETRGY--TV-HEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPS 755 (803)
Q Consensus 684 iLvvdD~~~-----~~~~~~~~L~~~g~--~v-~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~ 755 (803)
||+= ||+. +...+...-+..+. .+ +++.+-.|+.+.+.. .+|.|++| .|+--++.+.++...+.
T Consensus 161 iLIK-dNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~s~~q~~~a~~~---g~diImLD----Nm~p~~ik~~v~~~~~~ 232 (277)
T PRK08072 161 VMIK-DNHIAFAGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFD----NRTPDEIREFVKLVPSA 232 (277)
T ss_pred EEEE-HHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHC---CCCEEEEC----CCCHHHHHHHHHHHCCC
T ss_conf 7864-7798620789999999998659985599971989999999867---99899987----98999999999961696
Q ss_pred CCEEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 8299990678589987676057980750
Q gi|254780450|r 756 LKFIFISGYAEDAFSKNLPKDAKFSFLS 783 (803)
Q Consensus 756 ~~ii~~t~~~~~~~~~~~~~~~~~~~l~ 783 (803)
+ .+-.||.-....-+.+...+ .+||+
T Consensus 233 ~-~~EaSGgI~~~ni~~yA~tG-VD~IS 258 (277)
T PRK08072 233 I-VTEASGGITLENLPKYGGTG-VDYIS 258 (277)
T ss_pred E-EEEEECCCCHHHHHHHHHCC-CCEEE
T ss_conf 4-99998899899999999649-99998
No 434
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=28.48 E-value=30 Score=12.68 Aligned_cols=15 Identities=20% Similarity=0.146 Sum_probs=5.8
Q ss_pred HHHHCCCEEEEECCC
Q ss_conf 985259619999299
Q gi|254780450|r 165 YLDHSPVGFMSADHQ 179 (803)
Q Consensus 165 ~le~a~~gi~~~D~~ 179 (803)
+++--...+|.+-..
T Consensus 73 ~l~G~n~ti~aYGqT 87 (329)
T cd01366 73 ALDGYNVCIFAYGQT 87 (329)
T ss_pred HHCCCCEEEEEECCC
T ss_conf 867772489964789
No 435
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=28.37 E-value=30 Score=12.67 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=17.6
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 99871699999999874227652067885799999
Q gi|254780450|r 526 VKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRT 560 (803)
Q Consensus 526 v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~ 560 (803)
...++.++..++.|+-.. ...||...|.+
T Consensus 105 mFL~~~~ip~iI~~mq~~------T~pGGynlIv~ 133 (192)
T pfam03848 105 MFLQAERIPAIIANMQEH------TNVGGYNLIVA 133 (192)
T ss_pred EECCHHHHHHHHHHHHHH------CCCCCEEEEEE
T ss_conf 731867877999999985------28998899997
No 436
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=28.36 E-value=30 Score=12.67 Aligned_cols=17 Identities=0% Similarity=-0.019 Sum_probs=7.5
Q ss_pred HHHHHHCCCEEEEECCC
Q ss_conf 99985259619999299
Q gi|254780450|r 163 IDYLDHSPVGFMSADHQ 179 (803)
Q Consensus 163 ~~~le~a~~gi~~~D~~ 179 (803)
..+++--...++.+-..
T Consensus 67 ~~~l~G~n~ti~aYGqT 83 (341)
T cd01372 67 DGLFEGYNATVLAYGQT 83 (341)
T ss_pred HHHHCCCCEEEEEECCC
T ss_conf 99867775169997147
No 437
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=28.24 E-value=30 Score=12.65 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=42.2
Q ss_pred ECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCHHHH-HHHHHHCCCCEE
Q ss_conf 89989998999865999548998587889-888--999999998689982999906785899-876760579807
Q gi|254780450|r 711 AFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAEDAF-SKNLPKDAKFSF 781 (803)
Q Consensus 711 a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~~~~-~~~~~~~~~~~~ 781 (803)
..+..+.+..+.+.+ --.++++|+.--| |.| +++++.++.. .++|+|+.-|-+.-.+ .+-+......+.
T Consensus 152 ~~~~~~~i~~~~~~g-~geii~tdI~~DG~~~G~d~~l~~~i~~~-~~~piiasGGi~~~~di~~l~~~~~~~gv 224 (232)
T TIGR03572 152 GRDPVEWAREAEQLG-AGEILLNSIDRDGTMKGYDLELIKTVSDA-VSIPVIALGGAGSLDDLVEVALEAGASAV 224 (232)
T ss_pred CCCHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 987999999987359-98999988857685676899999999986-89999998898999999999985898199
No 438
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=28.13 E-value=30 Score=12.64 Aligned_cols=13 Identities=8% Similarity=0.077 Sum_probs=5.7
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 9799999999999
Q gi|254780450|r 785 PFSLKQLATSVHE 797 (803)
Q Consensus 785 P~~~~~L~~~i~~ 797 (803)
+.+.+.++++|+.
T Consensus 299 ~~t~~~v~~ALe~ 311 (336)
T cd06326 299 DPTRESLLAALEA 311 (336)
T ss_pred CCCHHHHHHHHHC
T ss_conf 9999999999973
No 439
>PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional
Probab=28.12 E-value=30 Score=12.64 Aligned_cols=14 Identities=14% Similarity=-0.090 Sum_probs=9.2
Q ss_pred HHHHHHHCCCEEEE
Q ss_conf 99999988989999
Q gi|254780450|r 697 SKRMLETRGYTVHE 710 (803)
Q Consensus 697 ~~~~L~~~g~~v~~ 710 (803)
.-++|+..|+.+..
T Consensus 252 F~~~L~~~g~~~~~ 265 (332)
T PRK00313 252 FFNTLEGLHWRPVP 265 (332)
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99999987993766
No 440
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=28.08 E-value=30 Score=12.63 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 98999899986599954899858788
Q gi|254780450|r 713 SGTDALKVMEKLQGRVDIVISDVVMP 738 (803)
Q Consensus 713 ~g~eal~~~~~~~~~~dlil~D~~mp 738 (803)
++.||.++++++ .|++|.|++-|
T Consensus 2 tp~eA~e~L~~~---~~~~lIDVRt~ 24 (117)
T cd01522 2 TPAEAWALLQAD---PQAVLVDVRTE 24 (117)
T ss_pred CHHHHHHHHHHC---CCEEEEECCCH
T ss_conf 989999999849---98399989988
No 441
>PRK11178 uridine phosphorylase; Provisional
Probab=27.96 E-value=30 Score=12.62 Aligned_cols=55 Identities=25% Similarity=0.166 Sum_probs=31.6
Q ss_pred CEEEEECHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHH
Q ss_conf 226998716999999998742276520678-8579999985042101224556678897899999978866884454
Q gi|254780450|r 523 LWGVKTDLSQFEQVLVNLCVNAHHAIMLKE-SGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIM 598 (803)
Q Consensus 523 ~~~v~~D~~~l~qvl~NLl~NA~~A~~~~~-~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~ 598 (803)
...+.|||.|.+.|-. .+.|+ ....+ .+-.+.. +.-.| ..++|.=+|+|.|.-.+
T Consensus 19 ~vil~GDP~Rv~~iA~-~ld~~---~~~~~~Re~~~~t---------------G~y~G--~~VsV~StGmG~ps~~I 74 (251)
T PRK11178 19 LAIVPGDPERVEKIAE-LMDNP---VFLASHREFTSWR---------------AELDG--KPVIVCSTGIGGPSTSI 74 (251)
T ss_pred EEEECCCHHHHHHHHH-HCCCC---EEEEECCCEEEEE---------------EEECC--EEEEEEECCCCCCHHHH
T ss_conf 8996799899999999-61896---3653115559999---------------99999--99999944789861999
No 442
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family; InterPro: IPR012807 The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains as several smaller homologues (excluded in this entry) show homology only to the C-terminal region including a motif: PxHxHxGxE..
Probab=27.93 E-value=30 Score=12.61 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=20.6
Q ss_pred CCCCEEEEEEEECCCCCCHHHHHHCCCCCC
Q ss_conf 889789999997886688445420232222
Q gi|254780450|r 577 PTKDMVLVEVEDTGIGMSPDIMEKIFEPFF 606 (803)
Q Consensus 577 ~~~~~v~i~V~D~G~GI~~~~~~~iFepF~ 606 (803)
.++|+++++|-|.=.=+ .....|||+|||
T Consensus 204 ~~~dClClavLd~Pl~f-~~~~~rLl~Pf~ 232 (234)
T TIGR02451 204 KGGDCLCLAVLDAPLRF-TSGVARLLQPFF 232 (234)
T ss_pred CCCCCEEEEECCCCHHH-CCCHHHHHHHHC
T ss_conf 98871477511540111-254124442201
No 443
>TIGR01331 bisphos_cysQ 3'(2'),5'-bisphosphate nucleotidase; InterPro: IPR006240 Sulphate is incorporated into 3-phosphoadenylylsulphate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulphate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. These sequences describe a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle..
Probab=27.83 E-value=30 Score=12.60 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=5.8
Q ss_pred HHHHH-HHHHHHHHH
Q ss_conf 56641-589999999
Q gi|254780450|r 429 HDFNN-VLTAILLSS 442 (803)
Q Consensus 429 Helr~-pL~~I~g~~ 442 (803)
|++-+ ||.++++.+
T Consensus 152 ~~~~~~~~~vviSr~ 166 (263)
T TIGR01331 152 READSEPLLVVISRS 166 (263)
T ss_pred CCCCCCCCHHHHHHH
T ss_conf 447764611011233
No 444
>TIGR02012 tigrfam_recA protein RecA; InterPro: IPR001553 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response . In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs . RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage . RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved , , among eubacterial species. It is also found in the chloroplast of plants . RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, ß-strand 3, the loop C-terminal to ß-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and ß-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation [Lusetti and Cox, Annu. Rev. Biochem. 2002. 71:71-100.]. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between ß-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at ß-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at ß-strand 2 and the loop C-terminal to that strand, all of which are greater than 90
Probab=27.72 E-value=30 Score=12.59 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=16.0
Q ss_pred EEEECCCCCEEEEHHHHHHHCCCCHHHHCC
Q ss_conf 999929996897646798642999678045
Q gi|254780450|r 173 FMSADHQGKILYINATLAEWIGIDLTTFTS 202 (803)
Q Consensus 173 i~~~D~~g~i~~~N~~~~~llG~~~~e~~~ 202 (803)
...+|++.- ..+.+++-+|.+.++++.
T Consensus 86 ~afiDAEHA---lD~~YA~~LGv~~~~L~~ 112 (322)
T TIGR02012 86 AAFIDAEHA---LDPVYAKKLGVDIDNLLV 112 (322)
T ss_pred EEEEECHHH---CCHHHHHHHCCCHHHHEE
T ss_conf 899845130---377889983645247112
No 445
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.65 E-value=31 Score=12.58 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 9999999999889899998-------998999899986599954899858788988899999999868998299990678
Q gi|254780450|r 693 VRRGSKRMLETRGYTVHEA-------FSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYA 765 (803)
Q Consensus 693 ~~~~~~~~L~~~g~~v~~a-------~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~ 765 (803)
....++..++..|.+|... .|=...+..+.+. .+|+|++-...|. ++..+++++++...+.|++.+++..
T Consensus 154 ~~~~~~~~~~~~G~~vv~~~~~~~g~~Df~~~l~~i~~~--~pD~v~~~~~~~~-~~~~~~~q~~~~G~~~~~~~~~~~~ 230 (347)
T cd06336 154 WVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAE--KPDVIFLGGPSPA-PAALVIKQARELGFKGGFLSCTGDK 230 (347)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHC--CCCEEEEECCCCH-HHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 999999987525976999995488866779999999965--9699999166735-7999999999769987589865766
No 446
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=27.54 E-value=31 Score=12.57 Aligned_cols=59 Identities=24% Similarity=0.145 Sum_probs=39.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC--C----------CEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf 8756999769889999999999988--9----------8999989989998999865999548998587889888
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETR--G----------YTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDG 742 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~--g----------~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G 742 (803)
-|+.|-.+|-+|.+..++.+-|++. . .++ ...|..+.+ ......||+|-+|=+-|.-.-
T Consensus 96 LG~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L-~~gds~~~l---~~~~~~~DvIYLDPMFP~r~K 166 (235)
T pfam04445 96 LGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHL-LHGSSADQL---EPNIDQPDVVYLDPMYPHRQK 166 (235)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEE-ECCCHHHHH---HHCCCCCCEEEECCCCCCCCC
T ss_conf 89969999788999999999999987481557999962899-838879997---524689878997376887554
No 447
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=27.45 E-value=18 Score=14.16 Aligned_cols=15 Identities=7% Similarity=-0.011 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 169999999987422
Q gi|254780450|r 530 LSQFEQVLVNLCVNA 544 (803)
Q Consensus 530 ~~~l~qvl~NLl~NA 544 (803)
+..|..-+.+|++.+
T Consensus 311 ~qal~~ev~~liG~~ 325 (340)
T COG4007 311 AQALVKEVKELIGER 325 (340)
T ss_pred HHHHHHHHHHHHCCH
T ss_conf 499999999996301
No 448
>pfam07563 DUF1541 Protein of unknown function (DUF1541). This family consists of several hypothetical bacterial and occurs as a tandem repeat.
Probab=27.22 E-value=31 Score=12.57 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=12.1
Q ss_pred CEEEEECCCCCCCHHHH
Q ss_conf 48998587889888999
Q gi|254780450|r 729 DIVISDVVMPEMDGPTL 745 (803)
Q Consensus 729 dlil~D~~mp~m~G~~~ 745 (803)
.++|..=+||||.|.++
T Consensus 5 ~V~l~AdHM~GMkGA~a 21 (53)
T pfam07563 5 EVILEADHMEGMKGAEA 21 (53)
T ss_pred EEEEECCCCCCCCCCEE
T ss_conf 89995542776789878
No 449
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.19 E-value=31 Score=12.53 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=8.0
Q ss_pred HHHHHCCCCEEEEEECCC
Q ss_conf 999851675499996188
Q gi|254780450|r 623 YGIIRQSGGYILPESEVG 640 (803)
Q Consensus 623 ~~iv~~~gG~i~v~S~~g 640 (803)
+.|++.-.|.|.+-|..|
T Consensus 155 ~~i~~~s~gfiY~vs~~G 172 (256)
T PRK13111 155 KKIASHASGFVYYVSRAG 172 (256)
T ss_pred HHHHHHCCCEEEEEECCC
T ss_conf 999962698599985677
No 450
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=27.02 E-value=31 Score=12.51 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=16.2
Q ss_pred ECHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 871699999999874227652067
Q gi|254780450|r 528 TDLSQFEQVLVNLCVNAHHAIMLK 551 (803)
Q Consensus 528 ~D~~~l~qvl~NLl~NA~~A~~~~ 551 (803)
+.|..+-.++.=|+|++ +-+.|
T Consensus 219 g~peeiA~~v~fLaSd~--as~iT 240 (261)
T PRK12428 219 ATADEQAAVLVFLCSDA--ARWIN 240 (261)
T ss_pred CCHHHHHHHHHHHHCCH--HCCCC
T ss_conf 09999999999994963--25736
No 451
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=27.00 E-value=31 Score=12.50 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=9.3
Q ss_pred HHHHHHHCCCEEEEECCCC
Q ss_conf 9999852596199992999
Q gi|254780450|r 162 AIDYLDHSPVGFMSADHQG 180 (803)
Q Consensus 162 ~~~~le~a~~gi~~~D~~g 180 (803)
...+++--...++.+-..|
T Consensus 73 v~~~l~G~n~ti~aYGqTG 91 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTG 91 (319)
T ss_pred HHHHHCCCCEEEEEECCCC
T ss_conf 9998689855999967899
No 452
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=26.99 E-value=31 Score=12.50 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 999999999988989999-------8998999899986599954899858788988899999999868
Q gi|254780450|r 693 VRRGSKRMLETRGYTVHE-------AFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTY 753 (803)
Q Consensus 693 ~~~~~~~~L~~~g~~v~~-------a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~ 753 (803)
....++..++..|.+|+. ..|=...+..+++. .+|+|++- +.+-++..++++.++..
T Consensus 151 ~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~--~pD~v~~~--~~~~~~~~~~~q~~~~G 214 (334)
T cd06327 151 LERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQAS--GADVLVLA--NAGADTVNAIKQAAEFG 214 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHC--CCCEEEEE--CCCHHHHHHHHHHHHCC
T ss_conf 999999999965987999996289975568999887755--99999991--66547999999999749
No 453
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.98 E-value=31 Score=12.50 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q ss_conf 256641589999
Q gi|254780450|r 428 AHDFNNVLTAIL 439 (803)
Q Consensus 428 sHelr~pL~~I~ 439 (803)
.|.+.|-|.++.
T Consensus 299 ~HN~~NalAA~a 310 (481)
T PRK01438 299 PHNVANALAAAA 310 (481)
T ss_pred HHHHHHHHHHHH
T ss_conf 769999999999
No 454
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=26.76 E-value=6.5 Score=17.34 Aligned_cols=16 Identities=56% Similarity=0.789 Sum_probs=9.8
Q ss_pred EEECCCCCCHHHHHHCCCCC
Q ss_conf 99788668844542023222
Q gi|254780450|r 586 VEDTGIGMSPDIMEKIFEPF 605 (803)
Q Consensus 586 V~D~G~GI~~~~~~~iFepF 605 (803)
..|||.-|+ +-|||.|
T Consensus 318 LveTgSrMD----dvIfeEf 333 (416)
T PRK09376 318 LIDTGSRMD----EVIFEEF 333 (416)
T ss_pred HHCCCCCHH----HHHHHHH
T ss_conf 752686253----8999985
No 455
>KOG4013 consensus
Probab=26.67 E-value=32 Score=12.46 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCEE
Q ss_conf 388999998516754999961889429
Q gi|254780450|r 618 GLSVVYGIIRQSGGYILPESEVGKGTI 644 (803)
Q Consensus 618 GL~i~~~iv~~~gG~i~v~S~~g~Gt~ 644 (803)
|+.|.++++++|.|.|.|- ||.|-+
T Consensus 166 Gv~~i~~lie~hkg~i~Vm--pG~Gi~ 190 (255)
T KOG4013 166 GVYIIRELIELHKGKIDVM--PGCGIN 190 (255)
T ss_pred CHHHHHHHHHHHCCCEEEE--CCCCCC
T ss_conf 4499999999852977882--488765
No 456
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=26.62 E-value=32 Score=12.46 Aligned_cols=58 Identities=29% Similarity=0.293 Sum_probs=45.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf 8756999769889999999999988989999899899989998659995489985878898
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEM 740 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m 740 (803)
.+..++||=....+..-++.+|...|++|..+++-..-++.+- ..-|+|+.-.+-|++
T Consensus 43 ~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~T~~l~~~~---~~ADIvIsA~G~~~l 100 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHT---KQADIVIVAVGKPGL 100 (168)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHH---HHCCEEEEECCCCCC
T ss_conf 7856999878730089999999848997999768988979974---104535541587663
No 457
>PRK10742 putative methyltransferase; Provisional
Probab=26.37 E-value=32 Score=12.43 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=41.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCC------------CEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf 87569997698899999999999889------------899998998999899986599954899858788988899
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRG------------YTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPT 744 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g------------~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~ 744 (803)
-|+.|-++|-+|.+..++..-|++.- .+. ...|..+.+. ...+.+|+|.+|=+-|.-.--.
T Consensus 109 lGc~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L-~~gds~~~L~---~~~~~~DVIYLDPMFP~rkKsA 181 (250)
T PRK10742 109 VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL-IHASSLTALT---DITPRPQVVYLDPMFPHKQKSA 181 (250)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEE-ECCCHHHHHH---HCCCCCCEEEECCCCCCCCCCH
T ss_conf 79869999788999999999999987381558999961678-6586899997---3588988899736677655412
No 458
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=26.25 E-value=32 Score=12.41 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=43.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC---HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 8756999769889999999999988989999899---8999899986599954899858788988899999999868998
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFS---GTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSL 756 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~---g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~ 756 (803)
.+.++.|.-|++.....++.++..+|.+|+.+.. -.+.++.+.+... .+.+++| +.|-+++.+.++...|++
T Consensus 287 ~GKkv~i~~g~~~~~~~~~~~~~ElGmevv~~~~~~~~~~~~e~~~~~~~-~~~~~v~----~~~~~e~~~~i~~~~pDl 361 (415)
T cd01977 287 KGKKVCIWTGGPKLWHWTKVIEDELGMQVVAMSSKFGHQEDFEKVIARGG-EGTIYID----DPNELEFFEILEMLKPDI 361 (415)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCC-CCEEEEE----CCCHHHHHHHHHHCCCCE
T ss_conf 39989997585589999999998668589996054588789999997478-8809986----898999999997369999
No 459
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.19 E-value=32 Score=12.40 Aligned_cols=105 Identities=8% Similarity=0.051 Sum_probs=39.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEE-ECCH---HHHHHHHHHCCCCCCEEEEECCCCCCC---HHHHHHHHHHHCCCC
Q ss_conf 999769889999999999988989999-8998---999899986599954899858788988---899999999868998
Q gi|254780450|r 684 VLLVEDEDSVRRGSKRMLETRGYTVHE-AFSG---TDALKVMEKLQGRVDIVISDVVMPEMD---GPTLLRELRKTYPSL 756 (803)
Q Consensus 684 iLvvdD~~~~~~~~~~~L~~~g~~v~~-a~~g---~eal~~~~~~~~~~dlil~D~~mp~m~---G~~~~~~ir~~~~~~ 756 (803)
|++.-.-.+...+ .+.++..|+.+.. ..++ .+-++...+.. -.++.+...-|..+ ..++.+.-++.++..
T Consensus 195 v~~~~~~~~~~~~-~~q~~~~G~~~~~~g~~~~~~~~~~~~~~~~~--~G~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~ 271 (334)
T cd06347 195 IFLPGYYTEVGLI-AKQARELGIKVPILGGDGWDSPKLEEAGGAAA--EGVYFTTHFSADDPTPKAKKFVKAYKAKYGKE 271 (334)
T ss_pred EEEECCCHHHHHH-HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH--CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9993661679999-99999769977699744668766776507875--88799952786677466899999999997879
Q ss_pred CE-EEEECCCH-HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 29-99906785-89987676057980750797999999999998
Q gi|254780450|r 757 KF-IFISGYAE-DAFSKNLPKDAKFSFLSKPFSLKQLATSVHEL 798 (803)
Q Consensus 757 ~i-i~~t~~~~-~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~ 798 (803)
|- ....||.. ....+.+... +..+.+.++.+|.+.
T Consensus 272 p~~~a~~~Yda~~~~~~A~~~A-------Gs~~~~~i~~aL~~~ 308 (334)
T cd06347 272 PDAFAALGYDAYYLLADAIERA-------GSTDPEAIRDALAKT 308 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHCC
T ss_conf 9642899999999999999986-------899999999999807
No 460
>TIGR00868 hCaCC calcium-activated chloride channel protein 1; InterPro: IPR004727 This entry represents a family of Ca(2+)-regulated chloride channels (CLCA) which includes bovine, murine and human proteins , . Each CLCA exhibits a distinct, often overlapping, tissue expression pattern. With the exception of the truncated, secreted protein hCLCA3 , they are synthesized as an approximately 125 kDa precursor transmembrane glycoprotein that is rapidly cleaved into 90 and 35 kDa subunits. The human proteins have been shown to affect a large number of cell functions including chloride conductance, epithelial secretion, cell-cell adhesion, apoptosis, cell cycle control, mucus production in asthma, and blood pressure. The CLCA proteins expressed on the luminal surface of lung vascular endothelia (bCLCA2; mCLCA1; hCLCA2) serve as adhesion molecules for lung metastatic cancer cells, mediating vascular arrest and lung colonization. Expression of hCLCA2 in normal mammary epithelium is consistently lost in human breast cancer and in all tumorigenic breast cancer cell lines. Re-expression of hCLCA2 in human breast cancer cells abrogates tumorigenicity in nude mice, implying that hCLCA2 acts as a tumour suppressor in breast cancer..
Probab=26.01 E-value=33 Score=12.38 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=29.5
Q ss_pred CCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCC
Q ss_conf 788978999999788668844542023222210
Q gi|254780450|r 576 LPTKDMVLVEVEDTGIGMSPDIMEKIFEPFFTT 608 (803)
Q Consensus 576 ~~~~~~v~i~V~D~G~GI~~~~~~~iFepF~tt 608 (803)
.++|..+.|+.-|||.|=+.-+=+=|+-+|||.
T Consensus 644 ~e~Gh~vtLELlDNGAGAD~~KNDGiYsRYFT~ 676 (874)
T TIGR00868 644 SENGHTVTLELLDNGAGADTVKNDGIYSRYFTA 676 (874)
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEC
T ss_conf 179978998864177665660058312201202
No 461
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=26.01 E-value=33 Score=12.38 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCCEEEEECCCHH----HHHHHHHHHHHCCC-EEEEECC
Q ss_conf 8756999769889----99999999998898-9999899
Q gi|254780450|r 680 NSAIVLLVEDEDS----VRRGSKRMLETRGY-TVHEAFS 713 (803)
Q Consensus 680 ~~~~iLvvdD~~~----~~~~~~~~L~~~g~-~v~~a~~ 713 (803)
++.+|++|||.-. .+. +..||+..|. +|+.+..
T Consensus 347 ~GKrVvlVDDSIVRGTTsr~-IV~mlReAGAkEVHvria 384 (470)
T COG0034 347 KGKRVVLVDDSIVRGTTSRR-IVQMLREAGAKEVHVRIA 384 (470)
T ss_pred CCCEEEEECCCCCCCCCHHH-HHHHHHHHCCCEEEEEEC
T ss_conf 89769997265145766999-999999718878899842
No 462
>PRK02621 consensus
Probab=25.94 E-value=33 Score=12.37 Aligned_cols=83 Identities=10% Similarity=0.144 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCH-HHHHHHHHHCCCCE------EE
Q ss_conf 989998999865999548998587889-888--999999998689982999906785-89987676057980------75
Q gi|254780450|r 713 SGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAE-DAFSKNLPKDAKFS------FL 782 (803)
Q Consensus 713 ~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~-~~~~~~~~~~~~~~------~l 782 (803)
+..+.++.+.+.+ .-.++++|+.--| |.| +++++.+++.. ++|+|+.-|-+. +...+.+......+ |.
T Consensus 155 ~~~~~~~~~~~~g-~geil~tdI~~DGt~~G~d~~l~~~i~~~~-~iPvi~sGGi~s~edi~~~l~~~~v~gvivG~al~ 232 (254)
T PRK02621 155 DAVEWAEEVAERG-AGEILLTSMDGDGTQAGYDLELTRAIAEAV-EIPVIASGGAGCCDHIAEALTEGKAEAALLASLLH 232 (254)
T ss_pred CHHHHHHHHHHHC-CCEEEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 7999998877628-896999888047975768869999999717-99799977999999999999858981987757878
Q ss_pred ECCCCHHHHHHHHHH
Q ss_conf 079799999999999
Q gi|254780450|r 783 SKPFSLKQLATSVHE 797 (803)
Q Consensus 783 ~KP~~~~~L~~~i~~ 797 (803)
.+=+++.++.+.+..
T Consensus 233 ~~~~~l~e~K~~l~~ 247 (254)
T PRK02621 233 YGQLTIAEIKADLLA 247 (254)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 899999999999997
No 463
>PRK13138 consensus
Probab=25.81 E-value=33 Score=12.36 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=8.9
Q ss_pred HHHHHHCCCCEEEEEECCC
Q ss_conf 9999851675499996188
Q gi|254780450|r 622 VYGIIRQSGGYILPESEVG 640 (803)
Q Consensus 622 ~~~iv~~~gG~i~v~S~~g 640 (803)
.+.|++.-.|.|.+-|..|
T Consensus 161 i~~i~~~s~gFiY~Vs~~G 179 (264)
T PRK13138 161 IQSMKSFASGFIYYVTSYG 179 (264)
T ss_pred HHHHHHHCCCEEEEEECCC
T ss_conf 9999973888089875456
No 464
>PRK06196 oxidoreductase; Provisional
Probab=25.78 E-value=33 Score=12.35 Aligned_cols=18 Identities=6% Similarity=-0.099 Sum_probs=7.5
Q ss_pred HHHHHHHHCCCCE-EEEEE
Q ss_conf 8999998516754-99996
Q gi|254780450|r 620 SVVYGIIRQSGGY-ILPES 637 (803)
Q Consensus 620 ~i~~~iv~~~gG~-i~v~S 637 (803)
..++.+.++..+. |.+.|
T Consensus 190 lft~~La~rl~~~gI~v~a 208 (316)
T PRK06196 190 LFAVHLDKLGADQGVRAFS 208 (316)
T ss_pred HHHHHHHHHHCCCCCEEEE
T ss_conf 9999999983689948999
No 465
>PRK09271 flavodoxin; Provisional
Probab=25.66 E-value=33 Score=12.34 Aligned_cols=72 Identities=18% Similarity=0.087 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCCCEEEEEC------CCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 9889999999999988989999--8998999899986599954899858------7889888999999998689982999
Q gi|254780450|r 689 DEDSVRRGSKRMLETRGYTVHE--AFSGTDALKVMEKLQGRVDIVISDV------VMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 689 D~~~~~~~~~~~L~~~g~~v~~--a~~g~eal~~~~~~~~~~dlil~D~------~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
..+.+..++...|+..|++|.. +..-..+-... ....||++|+-. .+|. +..++...+....-.-|+++
T Consensus 13 NTE~vA~~I~~~l~~~G~eV~~~e~d~~~~~~~~~--d~~~yDl~llG~yTwgdG~lPd-E~~DF~e~L~~~dl~gk~~a 89 (160)
T PRK09271 13 NTREVARMIAARCEEAGHAVTWVETDLQTLAQAPL--DPEEYDLFLLGTWTDNAGRTPP-EMKRFIAELVETIGKPPNVA 89 (160)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHCCC--CCCCCCEEEEECCCCCCCCCCH-HHHHHHHHHHHHCCCCCEEE
T ss_conf 68999999999999769823798701023220335--6111888999657048998966-78999999986045687699
Q ss_pred EEC
Q ss_conf 906
Q gi|254780450|r 761 ISG 763 (803)
Q Consensus 761 ~t~ 763 (803)
+-|
T Consensus 90 vFG 92 (160)
T PRK09271 90 VFG 92 (160)
T ss_pred EEC
T ss_conf 987
No 466
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.56 E-value=33 Score=12.33 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=11.9
Q ss_pred CCCEEEEECCCCCEEEEHHH
Q ss_conf 59619999299968976467
Q gi|254780450|r 169 SPVGFMSADHQGKILYINAT 188 (803)
Q Consensus 169 a~~gi~~~D~~g~i~~~N~~ 188 (803)
-|+.++.+--||.++.+-..
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~ 54 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHR 54 (265)
T ss_pred CCCEEEEECCCHHHHHHHHH
T ss_conf 89999998873999999998
No 467
>PRK06398 aldose dehydrogenase; Validated
Probab=25.52 E-value=33 Score=12.32 Aligned_cols=17 Identities=29% Similarity=0.743 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHC
Q ss_conf 77653038899999851
Q gi|254780450|r 612 GEGTGLGLSVVYGIIRQ 628 (803)
Q Consensus 612 g~GtGLGL~i~~~iv~~ 628 (803)
|.+.|+|++|++.+.+.
T Consensus 13 Ggs~GIG~aia~~la~~ 29 (256)
T PRK06398 13 GGSSGIGLAIVSRFVDE 29 (256)
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 87878999999999986
No 468
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=25.47 E-value=33 Score=12.32 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCEEEEEC---CHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHCC-CCCEEE
Q ss_conf 999999998898999989---9899989998659995489985878-89888999999998689-982999
Q gi|254780450|r 695 RGSKRMLETRGYTVHEAF---SGTDALKVMEKLQGRVDIVISDVVM-PEMDGPTLLRELRKTYP-SLKFIF 760 (803)
Q Consensus 695 ~~~~~~L~~~g~~v~~a~---~g~eal~~~~~~~~~~dlil~D~~m-p~m~G~~~~~~ir~~~~-~~~ii~ 760 (803)
..+..+|+..|++|..-. ...+=++.+.+. .+|+|-.-..+ +.++-...+..+++..+ ++||++
T Consensus 17 ~~v~~~l~~~g~~v~~lg~~~~~e~~v~~~~~~--~~dvVgiS~~~~~~~~~~~~~~~~~~~~~~~v~vv~ 85 (125)
T cd02065 17 NIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVV 85 (125)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 999999997899899899988999999999860--899999852113018999999999996799875997
No 469
>PRK02145 consensus
Probab=25.46 E-value=33 Score=12.31 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCE-
Q ss_conf 98999989989998999865999548998587889-888--99999999868998299990678589987676057980-
Q gi|254780450|r 705 GYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFS- 780 (803)
Q Consensus 705 g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~- 780 (803)
|.+-.+--+..+-++.+.+.+.. .++++|+.--| |.| +++++.++...+ +|+|+.-|-+.-.+-..+...+..+
T Consensus 150 ~~~~~t~~~~~~~~~~~~~~G~g-eil~tdI~rDG~~~G~dl~l~~~i~~~~~-ipvIasGGi~s~~di~~~~~~~~~~a 227 (257)
T PRK02145 150 GGRKATGLDAVEWARKMAELGAG-EILLTSMDRDGTKSGFDLALTRAVSDAVP-VPVIASGGVGSLQHLADGITEGHADA 227 (257)
T ss_pred CCEECCCCCHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCHHHHHHHHHCCC-CCEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf 87143677455765688761878-68999984778778889799999986269-98999868999999999998089848
Q ss_pred ------EEECCCCHHHHHHHHHH
Q ss_conf ------75079799999999999
Q gi|254780450|r 781 ------FLSKPFSLKQLATSVHE 797 (803)
Q Consensus 781 ------~l~KP~~~~~L~~~i~~ 797 (803)
|.-+=+++.++.+.+++
T Consensus 228 v~~g~~~~~~~~~i~e~k~~l~~ 250 (257)
T PRK02145 228 VLAASIFHYGEHTVGEAKRFMAE 250 (257)
T ss_pred EEEHHHHHCCCCCHHHHHHHHHH
T ss_conf 76532677799899999999998
No 470
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=25.06 E-value=34 Score=12.26 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=0.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 69997698899999999999889899998998999899986599954899858788
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMP 738 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp 738 (803)
+|||.-----+..-+.+.|...|++|..+....++...+. ..++....|+.+|
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~ 54 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA---GGVEVVLGDLRDP 54 (275)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHCC---CCCEEECCCCCCC
T ss_conf 3899867775799999999975986999736822111103---7852884564160
No 471
>PRK00758 GMP synthase subunit A; Validated
Probab=24.98 E-value=34 Score=12.26 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=0.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6999769889999999999988989999899899989998659995489985878898889999999986899829999
Q gi|254780450|r 683 IVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 683 ~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
+||++|--...-..+.+.|+..|+.|....+-..+-++. . .||.|++==+ |++.-......+-... ++||+.+
T Consensus 1 kIlviD~~dsft~ni~~~l~~~g~~v~v~~~~~~~~~i~--~--~~dgiilS~G-P~~~~~~~~~~~i~~~-~iPiLGI 73 (184)
T PRK00758 1 KILVINNGGQYNHLIHRTLRYLGVDAKIIPNTTPLEEIK--A--EPDGIILSGG-PEIERAGNCEEYLLEL-DVPILGI 73 (184)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHH--H--CCCEEEECCC-CCCCCCCCHHHHHHHC-CCCEEEE
T ss_conf 999998986389999999997899289995989899996--3--8998998899-9833322069999865-9988997
No 472
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=24.85 E-value=34 Score=12.24 Aligned_cols=47 Identities=30% Similarity=0.333 Sum_probs=0.0
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9976988999999999998898999989989998999865999548998
Q gi|254780450|r 685 LLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVIS 733 (803)
Q Consensus 685 LvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~ 733 (803)
||||-....-..+.+.|+..|+.|.....-..+.+..... .+|.|+.
T Consensus 1 liiD~~dsft~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~d~iil 47 (187)
T pfam00117 1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELL--NPDGIII 47 (187)
T ss_pred CEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHC--CCCEEEE
T ss_conf 9893786389999999986899799998999869998525--9998999
No 473
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase; InterPro: IPR011294 This entry represents a subfamily of the short chain dehydrogenases. Characterised members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polymers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.; GO: 0003858 3-hydroxybutyrate dehydrogenase activity.
Probab=24.74 E-value=34 Score=12.22 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHC
Q ss_conf 77653038899999851
Q gi|254780450|r 612 GEGTGLGLSVVYGIIRQ 628 (803)
Q Consensus 612 g~GtGLGL~i~~~iv~~ 628 (803)
|..+|+|+.|.+.|.+.
T Consensus 8 GaaSGIG~~iA~~LA~a 24 (258)
T TIGR01963 8 GAASGIGLAIAKALAAA 24 (258)
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 58716789999999872
No 474
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.73 E-value=34 Score=12.22 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCH--HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEE
Q ss_conf 98999989989998999865999548998587889-888--999999998689982999906785899876760579807
Q gi|254780450|r 705 GYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG--PTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSF 781 (803)
Q Consensus 705 g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G--~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~ 781 (803)
|....+--+..+.+..+.+.+.. .++++|+.--| |.| +++++.+++.. ++|+|+.-|-+.-.+-..+...+..+.
T Consensus 145 ~~~~~~~~~~~d~~~~~~~~G~g-eil~tdI~rDGt~~G~d~~l~~~i~~~~-~~pvIasGGv~s~~dl~~l~~~g~~gv 222 (252)
T PRK13597 145 GGRVPTGLHAVEWAVKGVELGAG-EILLTSMDRDGTKEGYDLRLTRMVAEAV-GVPVIASGGAGRMEHFLEAFQAGAEAA 222 (252)
T ss_pred CCEEECCCCHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 87275697699999999964899-9999757376844476959999998507-998999789899999999987899699
Q ss_pred EE------CCCCHHHHHHHHHH
Q ss_conf 50------79799999999999
Q gi|254780450|r 782 LS------KPFSLKQLATSVHE 797 (803)
Q Consensus 782 l~------KP~~~~~L~~~i~~ 797 (803)
+. +=+++.++.+.+.+
T Consensus 223 i~G~al~~~~~s~~e~k~~L~~ 244 (252)
T PRK13597 223 LAASVFHFGEIPIPELKRYLAE 244 (252)
T ss_pred EEHHHHHCCCCCHHHHHHHHHH
T ss_conf 8712767799999999999998
No 475
>PRK09213 purine operon repressor; Provisional
Probab=24.47 E-value=35 Score=12.19 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCEEEE---EECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC---CH
Q ss_conf 388999998516754999---961889429999943757664433333322223544445333478756999769---88
Q gi|254780450|r 618 GLSVVYGIIRQSGGYILP---ESEVGKGTIFRIFLPRYVQEHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVED---ED 691 (803)
Q Consensus 618 GL~i~~~iv~~~gG~i~v---~S~~g~Gt~F~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD---~~ 691 (803)
|.++.......+|=.+-+ +|..-.|++.++.-+.........-......... +.+||+||| +-
T Consensus 141 GIplA~~vA~~L~VP~Vi~Rk~~kvTeG~tvsinYvSgss~ri~tM~Lskr~L~~-----------gsrVLiIDDFmk~G 209 (274)
T PRK09213 141 GIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKE-----------GSNVLIVDDFMKAG 209 (274)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCCCEEEEEEEEHHHCCC-----------CCEEEEECHHHHCC
T ss_conf 8618999999809989999767887679708999996366518999987633699-----------98399983454476
Q ss_pred HHHHHHHHHHHHCCCEEE
Q ss_conf 999999999998898999
Q gi|254780450|r 692 SVRRGSKRMLETRGYTVH 709 (803)
Q Consensus 692 ~~~~~~~~~L~~~g~~v~ 709 (803)
-...-+..+++..+++|.
T Consensus 210 gt~~Gm~~L~~Ef~a~vv 227 (274)
T PRK09213 210 GTINGMISLLKEFDAEVV 227 (274)
T ss_pred CHHHHHHHHHHHCCCEEE
T ss_conf 088999999997198797
No 476
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism . Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology .; GO: 0005975 carbohydrate metabolic process.
Probab=24.45 E-value=33 Score=12.34 Aligned_cols=11 Identities=55% Similarity=0.809 Sum_probs=0.0
Q ss_pred EEEEECCCCCC
Q ss_conf 99997886688
Q gi|254780450|r 584 VEVEDTGIGMS 594 (803)
Q Consensus 584 i~V~D~G~GI~ 594 (803)
|-|.+||+||+
T Consensus 61 ILICGTGiG~s 71 (146)
T TIGR00689 61 ILICGTGIGMS 71 (146)
T ss_pred EEEECCCCCEE
T ss_conf 47736875121
No 477
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=24.39 E-value=35 Score=12.18 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899999999999889899998998------99989998659995489985878898889999999986899829999
Q gi|254780450|r 691 DSVRRGSKRMLETRGYTVHEAFSG------TDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 691 ~~~~~~~~~~L~~~g~~v~~a~~g------~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
..+...+...++..||.+..+.+. .+.++.+.++ .+|-||+ +|...-.+..+.+++. ++|+|.+
T Consensus 15 ~~~~~gie~~~~~~Gy~~ll~~s~~~~~~e~~~l~~l~~~--~vDGiIl---~~~~~~~~~~~~l~~~--~iPvV~i 84 (259)
T cd01542 15 SRTVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQ--KVDGIIL---LATTITDEHREAIKKL--NVPVVVV 84 (259)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHC--CCCEEEE---ECCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 9999999999998699899997899989999999999956--9998999---3777775999999966--9999995
No 478
>PRK12408 glucokinase; Provisional
Probab=24.33 E-value=15 Score=14.69 Aligned_cols=27 Identities=37% Similarity=0.672 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEECCCC
Q ss_conf 776530388999998516754999961889
Q gi|254780450|r 612 GEGTGLGLSVVYGIIRQSGGYILPESEVGK 641 (803)
Q Consensus 612 g~GtGLGL~i~~~iv~~~gG~i~v~S~~g~ 641 (803)
|-|||||.+. ++...++.+-+.||-|.
T Consensus 152 GpGTGLG~a~---l~~~~~~~~v~psEgGH 178 (336)
T PRK12408 152 GPGTGLGAAL---WIPNGGRPVVLPTEAGQ 178 (336)
T ss_pred ECCCCCCEEE---EEECCCEEEEECCCCCC
T ss_conf 5788750368---99659915970256654
No 479
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=24.10 E-value=35 Score=12.14 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH--------HHHHHHHHCCCCCCEEEEECCCC-----------C
Q ss_conf 7875699976988999999999998898999989989--------99899986599954899858788-----------9
Q gi|254780450|r 679 GNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGT--------DALKVMEKLQGRVDIVISDVVMP-----------E 739 (803)
Q Consensus 679 ~~~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~--------eal~~~~~~~~~~dlil~D~~mp-----------~ 739 (803)
|-.+.|.+..++..-...-..+++..|.+|+...++. ||++.+..+......++-=..-| .
T Consensus 106 Gl~~~I~mp~~~~~~~~~~~~~m~~yGA~Vv~v~~~~gtl~~ai~ea~~~~~~~~~~~~y~~gs~~~p~p~~~~v~~~q~ 185 (365)
T cd06446 106 GLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQS 185 (365)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHH
T ss_conf 99479994477423341789999975987999658982089999999999995645340025630378987137776433
Q ss_pred CCHHHHHHHHHHHCCCCC--EEEEECCC
Q ss_conf 888999999998689982--99990678
Q gi|254780450|r 740 MDGPTLLRELRKTYPSLK--FIFISGYA 765 (803)
Q Consensus 740 m~G~~~~~~ir~~~~~~~--ii~~t~~~ 765 (803)
.-|+|+++++......+| |+++.|.+
T Consensus 186 tig~Ei~eQl~~~~g~~PD~vv~pvGgG 213 (365)
T cd06446 186 VIGEEAKKQILEKEGELPDVVIACVGGG 213 (365)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 8999999999996299988999787876
No 480
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=24.06 E-value=35 Score=12.14 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=0.0
Q ss_pred CCCEEEEECCC---HHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 87569997698---89999999999988989999899
Q gi|254780450|r 680 NSAIVLLVEDE---DSVRRGSKRMLETRGYTVHEAFS 713 (803)
Q Consensus 680 ~~~~iLvvdD~---~~~~~~~~~~L~~~g~~v~~a~~ 713 (803)
++..|||+-+| -+.|+-..-.|..+|++++.|.|
T Consensus 66 ~~a~ILvag~NFGCGSSREhAvwAL~d~Gir~VIA~S 102 (201)
T PRK01641 66 QGASILLAGENFGCGSSREHAPWALADYGFRVVIAPS 102 (201)
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECH
T ss_conf 8981899678767775088999999985998999725
No 481
>PRK08638 threonine dehydratase; Validated
Probab=23.83 E-value=36 Score=12.11 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC-HHHHHHHHHHHHHCCCEEEE--------EC
Q ss_conf 4299999437576644333333222235444453334787569997698-89999999999988989999--------89
Q gi|254780450|r 642 GTIFRIFLPRYVQEHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVEDE-DSVRRGSKRMLETRGYTVHE--------AF 712 (803)
Q Consensus 642 Gt~F~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD~-~~~~~~~~~~L~~~g~~v~~--------a~ 712 (803)
|-..+|++| ...+.........+ +..|.+++++ ........++.+..|+.... +.
T Consensus 98 G~~~~I~~P-------------~~~~~~K~~~~~~~---GA~Vi~~~~~~~~a~~~a~~~a~~~g~~~v~~~~~p~~i~G 161 (329)
T PRK08638 98 GIDGKVVMP-------------KGAPKSKVAATCGY---GAEVVLHGDNFNDTIAKVSEIVEEEGRTFIPPYDDPKVIAG 161 (329)
T ss_pred CCCEEEECC-------------CCCCHHHHHHHHHH---CCCCEECCCCHHHHHHHHHHHHHHHCCEEECCCCCHHHHHH
T ss_conf 986598588-------------98879999999972---87514317864899999999998509885224678315644
Q ss_pred CHHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHC
Q ss_conf 989998999865999548998587889-8889999999986899829999067858998767605
Q gi|254780450|r 713 SGTDALKVMEKLQGRVDIVISDVVMPE-MDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKD 776 (803)
Q Consensus 713 ~g~eal~~~~~~~~~~dlil~D~~mp~-m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~ 776 (803)
.+.-+++++++. +.+|.|++=++.-+ +.| .+..++...|+++|+.+-...-+.+...+.++
T Consensus 162 ~~Ti~~Ei~eq~-~~~D~vvvpvGgGGl~~G--i~~~lk~~~p~~~vigVepe~a~~~~~s~~~g 223 (329)
T PRK08638 162 QGTIGLEILEDL-YDVDTVIVPIGGGGLIAG--IAVALKSINPTIHIIGVQSENVHGMAASFYKG 223 (329)
T ss_pred HHHHHHHHHHHH-CCCCEEEEEECCHHHHHH--HHHHHHHHCCCCEEEEEEECCCCCHHHHHHCC
T ss_conf 135999999982-469959994274389999--99999974999879999879999558999879
No 482
>KOG0147 consensus
Probab=23.80 E-value=36 Score=12.10 Aligned_cols=56 Identities=27% Similarity=0.408 Sum_probs=0.0
Q ss_pred CCEEEEEEEECCCCCCHHHHHHCCCCC------CCCCC--CCCCCCCHHH------HHHHHHHCCCCEEEE
Q ss_conf 978999999788668844542023222------21013--5776530388------999998516754999
Q gi|254780450|r 579 KDMVLVEVEDTGIGMSPDIMEKIFEPF------FTTKK--VGEGTGLGLS------VVYGIIRQSGGYILP 635 (803)
Q Consensus 579 ~~~v~i~V~D~G~GI~~~~~~~iFepF------~ttk~--~g~GtGLGL~------i~~~iv~~~gG~i~v 635 (803)
|.+.++.|..-=.-|.++.+..||||| ..++. .|.-.|.|+. -+|.-.+.++| ..+
T Consensus 276 gp~~rl~vgnLHfNite~~lr~ifEpfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng-fel 345 (549)
T KOG0147 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG-FEL 345 (549)
T ss_pred CCHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHCC-CEE
T ss_conf 4146644201456831877731206766400024112211375567424898448889999997235-100
No 483
>TIGR01120 rpiB ribose 5-phosphate isomerase B; InterPro: IPR004785 Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology . This entry represents the RpiB enzyme.; GO: 0004751 ribose-5-phosphate isomerase activity, 0006098 pentose-phosphate shunt.
Probab=23.80 E-value=25 Score=13.23 Aligned_cols=9 Identities=56% Similarity=1.232 Sum_probs=0.0
Q ss_pred CCCCHHHHH
Q ss_conf 653038899
Q gi|254780450|r 614 GTGLGLSVV 622 (803)
Q Consensus 614 GtGLGL~i~ 622 (803)
|||+|+||.
T Consensus 65 gTGiGmSi~ 73 (143)
T TIGR01120 65 GTGIGMSIA 73 (143)
T ss_pred ECCCCHHHH
T ss_conf 053211001
No 484
>PRK07707 consensus
Probab=23.68 E-value=36 Score=12.09 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHC
Q ss_conf 77653038899999851
Q gi|254780450|r 612 GEGTGLGLSVVYGIIRQ 628 (803)
Q Consensus 612 g~GtGLGL~i~~~iv~~ 628 (803)
|.+.|+|++|++.+.+.
T Consensus 9 G~s~GIG~aia~~la~~ 25 (239)
T PRK07707 9 GASGGIGQAISKQLAQD 25 (239)
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 68878999999999987
No 485
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=23.54 E-value=36 Score=12.07 Aligned_cols=17 Identities=35% Similarity=0.774 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHC
Q ss_conf 77653038899999851
Q gi|254780450|r 612 GEGTGLGLSVVYGIIRQ 628 (803)
Q Consensus 612 g~GtGLGL~i~~~iv~~ 628 (803)
|.+.|+|++|++.+.+.
T Consensus 16 Ggs~GIG~aia~~la~~ 32 (266)
T PRK06171 16 GGSSGIGLAIVEELLAQ 32 (266)
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 77878999999999987
No 486
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=23.29 E-value=37 Score=12.04 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC---EEEEECCHHHHHHHHHHCCCCCCEEEEECCCC-----CCCHHHHHHHHHH-H
Q ss_conf 5699976988999999999998898---99998998999899986599954899858788-----9888999999998-6
Q gi|254780450|r 682 AIVLLVEDEDSVRRGSKRMLETRGY---TVHEAFSGTDALKVMEKLQGRVDIVISDVVMP-----EMDGPTLLRELRK-T 752 (803)
Q Consensus 682 ~~iLvvdD~~~~~~~~~~~L~~~g~---~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp-----~m~G~~~~~~ir~-~ 752 (803)
.+|-+||=|+.+-++.+++|..... ....----..|.+.+++....||+|++|..=| .+=..+..+.+++ +
T Consensus 100 ~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDvII~D~~DP~~~~~~Lfs~eFy~~~~~~L 179 (240)
T pfam01564 100 EKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVIIVDSTDPVGPAENLFSKEFYDLLKRAL 179 (240)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 38999757889999999987985243479855999816899998572544589995899765334442299999999865
Q ss_pred CCCCCEEEEEC
Q ss_conf 89982999906
Q gi|254780450|r 753 YPSLKFIFISG 763 (803)
Q Consensus 753 ~~~~~ii~~t~ 763 (803)
.|+--++.-++
T Consensus 180 ~~~Gi~v~Q~~ 190 (240)
T pfam01564 180 KEDGVFVTQAE 190 (240)
T ss_pred CCCCEEEEECC
T ss_conf 99978999248
No 487
>TIGR02387 rpoC1_cyan DNA-directed RNA polymerase, gamma subunit; InterPro: IPR012755 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The RNA polymerase gamma subunit, encoded by the rpoC1 gene, is found in cyanobacteria and corresponds to the N-terminal region the beta' subunit, encoded by rpoC, in other bacteria. The equivalent subunit in plastids and chloroplasts is designated beta', while the product of the rpoC2 gene is designated beta''.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=23.12 E-value=37 Score=12.02 Aligned_cols=50 Identities=18% Similarity=0.381 Sum_probs=0.0
Q ss_pred EEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCC
Q ss_conf 99871699999999874227652067885799999850421012245566788978999999788668844542023222
Q gi|254780450|r 526 VKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPF 605 (803)
Q Consensus 526 v~~D~~~l~qvl~NLl~NA~~A~~~~~~G~v~i~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~~~~~~iFepF 605 (803)
+.|-.+|++| ||++. -+.+.+..-|.+ |..+.+. -||+|.+..=.+|+||
T Consensus 333 ieGkqGrfrq---nllGk---rvdysGrsvivv--------------------GP~lk~~----qCGlP~emaielfqPf 382 (625)
T TIGR02387 333 IEGKQGRFRQ---NLLGK---RVDYSGRSVIVV--------------------GPKLKLH----QCGLPKEMAIELFQPF 382 (625)
T ss_pred HCCCCCCHHH---HHCCC---EEECCCCEEEEE--------------------CCCEEEE----ECCCCHHHHHHHHHHH
T ss_conf 4166651135---34134---020057478998--------------------7840476----3588556788763058
No 488
>PRK06722 exonuclease; Provisional
Probab=23.01 E-value=37 Score=12.00 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEEC---CCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 7698899999999999889899998998999899986599954899858---78898889999999986899829
Q gi|254780450|r 687 VEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDV---VMPEMDGPTLLRELRKTYPSLKF 758 (803)
Q Consensus 687 vdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~---~mp~m~G~~~~~~ir~~~~~~~i 758 (803)
|.|-|..-.++-++|+--|-.+.+|+|+..-..-++. |.-+-++ .||..|-+++.+.+-+.++.++.
T Consensus 32 V~~aP~ieeVLp~FleFIGd~~LVAHNAsFD~gFL~~-----~C~~hg~e~P~~~~~~~~dl~k~v~~~~~el~~ 101 (242)
T PRK06722 32 LIGVEKFPQIIEKFIQFIGEDSIFVTWGKEDYRFLSH-----DCTLHGVECPCMEKERRIDLQKFVFQAYEELFE 101 (242)
T ss_pred HHCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----HHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHC
T ss_conf 8279978999999999827883897344022779997-----752428999998421088899998631244321
No 489
>pfam00456 Transketolase_N Transketolase, thiamine diphosphate binding domain. This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilize thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.
Probab=22.97 E-value=37 Score=11.99 Aligned_cols=54 Identities=15% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCEEEEECCCHH---------HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCCCEEEEE
Q ss_conf 756999769889---------9999999999889899998998------99989998659995489985
Q gi|254780450|r 681 SAIVLLVEDEDS---------VRRGSKRMLETRGYTVHEAFSG------TDALKVMEKLQGRVDIVISD 734 (803)
Q Consensus 681 ~~~iLvvdD~~~---------~~~~~~~~L~~~g~~v~~a~~g------~eal~~~~~~~~~~dlil~D 734 (803)
+..|+++|+|.. ..+-+...++..|+.|....|| ..|++.+......+-+|++.
T Consensus 174 ~nLi~i~D~N~iqidG~t~~~~~ed~~~rf~a~GW~v~~v~DGhD~~~I~~Ai~~Ak~~~~kPt~Ii~~ 242 (333)
T pfam00456 174 GNLIAFYDDNRISIDGETEISFTEDTAKRFEAYGWHVIEVEDGHDVEAIAAAIEEAKAEKDKPTLIICR 242 (333)
T ss_pred CCEEEEECCCCEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 978999745754217984535551099998764907999469999999999999998658998169864
No 490
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=22.80 E-value=37 Score=11.97 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred EEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 9998998999899986599954899858788988899999999868998299990678589987676057980750
Q gi|254780450|r 708 VHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFSFLS 783 (803)
Q Consensus 708 v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l~ 783 (803)
.+++.+-.||.+++.. .+|.|++|=.=|+ +=.++...+|+..|. ..+-.||.-....-..+...+. ++++
T Consensus 84 ~VEv~tl~e~~~a~~~---~~d~I~LDn~spe-~l~~~v~~l~~~~~~-v~iEaSGgI~~~ni~~yA~tGv-D~IS 153 (169)
T pfam01729 84 EVEVENLEELEEALEA---GADIIMLDNFSPE-EVREAVEELDERAGR-VLLEVSGGITLDNVLEYAKTGV-DVIS 153 (169)
T ss_pred EEEEEHHHHHHHHHHC---CCCEEEECCCCHH-HHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHCCC-CEEE
T ss_conf 9996019989999846---9989997799999-999999999975896-7999618999999999997699-9998
No 491
>PRK13133 consensus
Probab=22.68 E-value=38 Score=11.96 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=0.0
Q ss_pred HHHHHHHHH----HCCCCCEEEEE------CCCHHHHHHHHHHCCCCEEE
Q ss_conf 999999998----68998299990------67858998767605798075
Q gi|254780450|r 743 PTLLRELRK----TYPSLKFIFIS------GYAEDAFSKNLPKDAKFSFL 782 (803)
Q Consensus 743 ~~~~~~ir~----~~~~~~ii~~t------~~~~~~~~~~~~~~~~~~~l 782 (803)
+++++++|. ..+++|+++|| .|..+...+.+.+.+..++|
T Consensus 80 ~~~~~~~r~~~~~~~~~~PivlMtY~N~i~~yG~e~F~~~~~~aGvdGlI 129 (267)
T PRK13133 80 LELVRKARNGEGCRKITVPILLMGYCNPLIAYGGDCFLADAVKAGVDGLL 129 (267)
T ss_pred HHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHHHCCCCEEE
T ss_conf 99999997302434668778715645799984779999999986987887
No 492
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=22.52 E-value=38 Score=11.94 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 899999999999889899998998------99989998659995489985878898889999999986899829999
Q gi|254780450|r 691 DSVRRGSKRMLETRGYTVHEAFSG------TDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFI 761 (803)
Q Consensus 691 ~~~~~~~~~~L~~~g~~v~~a~~g------~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~ 761 (803)
..+...+.+.++..||.+..+.+. .+.++.+.+. .+|-||+ +|...-.+.++.+.+. ++|+|++
T Consensus 15 ~~~~~gi~~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~--~vDGiIi---~~~~~~~~~~~~l~~~--~iPvV~i 84 (265)
T cd06299 15 ASLATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQ--RVDGIIV---VPHEQSAEQLEDLLKR--GIPVVFV 84 (265)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHC--CCCEEEE---EECCCCHHHHHHHHHC--CCCEEEE
T ss_conf 9999999999998599899997899989999999999947--9999999---8067998999999966--9989983
No 493
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=22.51 E-value=38 Score=11.93 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf 8999999998-689982999906785899876760579807507979999999999985137
Q gi|254780450|r 742 GPTLLRELRK-TYPSLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQSD 802 (803)
Q Consensus 742 G~~~~~~ir~-~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~ 802 (803)
|+.++..++. ..|=+-+|+++...+.. .+-+.-|.++++|.+.++++++.+
T Consensus 65 g~~va~~l~~~~fPfla~i~l~~~~m~v----------v~r~eG~~~p~el~~~L~~~i~~n 116 (116)
T cd02991 65 GYRVSQALRERTYPFLAMIMLKDNRMTI----------VGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred HHHHHHHCCCCCCCEEEEEEEECCCEEE----------EEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 9999997688879958999970883489----------999526899899999999998569
No 494
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=22.43 E-value=38 Score=11.92 Aligned_cols=23 Identities=26% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 87569997698899999999999
Q gi|254780450|r 680 NSAIVLLVEDEDSVRRGSKRMLE 702 (803)
Q Consensus 680 ~~~~iLvvdD~~~~~~~~~~~L~ 702 (803)
.+.+||||||=.+.+..+...++
T Consensus 86 ~GkkVLIVDDI~DTG~Tl~~a~~ 108 (192)
T COG2236 86 SGKKVLIVDDIVDTGETLELALE 108 (192)
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 89858998233376176999999
No 495
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=22.26 E-value=38 Score=11.90 Aligned_cols=91 Identities=15% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCC-CCHH--HHHHHHHHHCCCCCEEEEECCCH-HHHHHHHHHCCCCE
Q ss_conf 98999989989998999865999548998587889-8889--99999998689982999906785-89987676057980
Q gi|254780450|r 705 GYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDGP--TLLRELRKTYPSLKFIFISGYAE-DAFSKNLPKDAKFS 780 (803)
Q Consensus 705 g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~-m~G~--~~~~~ir~~~~~~~ii~~t~~~~-~~~~~~~~~~~~~~ 780 (803)
|..-..-.+..+.++.+.+.+.. .++++|+.--| |.|+ ++++.++... ++|+|+.-|-+. +...+.+...+..+
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~G~g-eil~tdI~~DGt~~G~d~~l~~~i~~~~-~~piI~sGGi~~~~di~~~l~~~~~~g 219 (243)
T cd04731 142 GGRKPTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKKGYDLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADA 219 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHCCCEE
T ss_conf 98441267899999999846987-8999872576856657999999999868-999999889999999999998789829
Q ss_pred EEE------CCCCHHHHHHHHHH
Q ss_conf 750------79799999999999
Q gi|254780450|r 781 FLS------KPFSLKQLATSVHE 797 (803)
Q Consensus 781 ~l~------KP~~~~~L~~~i~~ 797 (803)
.+. +=+++.++.+.+.+
T Consensus 220 v~~g~~~~~~~~~l~~~k~~L~~ 242 (243)
T cd04731 220 ALAASIFHFGEYTIAELKEYLAE 242 (243)
T ss_pred EEEHHHHHCCCCCHHHHHHHHHH
T ss_conf 98822767699899999999861
No 496
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit; InterPro: IPR012754 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This entry represents the beta-prime subunit, RpoC, found in most bacteria. It excludes some, mainly cyanobacterial, species where RpoC is replaced by two homologous proteins that include an additional domain. One arm of the "claw" is predominantly formed by this subunit, the other being predominantly formed by the beta subunit. The active site of the enzyme is defined by three invariant aspartate residues within the beta-prime subunit .; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=22.14 E-value=38 Score=11.94 Aligned_cols=15 Identities=27% Similarity=0.764 Sum_probs=0.0
Q ss_pred CCCCHHHHHHCCCCC
Q ss_conf 668844542023222
Q gi|254780450|r 591 IGMSPDIMEKIFEPF 605 (803)
Q Consensus 591 ~GI~~~~~~~iFepF 605 (803)
||||.+..=.+|.||
T Consensus 414 cGLPk~MALeLFKPF 428 (1552)
T TIGR02386 414 CGLPKKMALELFKPF 428 (1552)
T ss_pred CCCCHHHHHHHCCCE
T ss_conf 688279887516730
No 497
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=22.10 E-value=38 Score=11.88 Aligned_cols=95 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCC-CC----EEEEEEC-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCH
Q ss_conf 388999998516-75----4999961-88942999994375766443333332222354444533347875699976988
Q gi|254780450|r 618 GLSVVYGIIRQS-GG----YILPESE-VGKGTIFRIFLPRYVQEHTQESHYSHDIAIIPQEEPADLTGNSAIVLLVEDED 691 (803)
Q Consensus 618 GL~i~~~iv~~~-gG----~i~v~S~-~g~Gt~F~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLvvdD~~ 691 (803)
|..+...+...+ .+ -++-+-. .|.+.-.....| .+.+|+||||
T Consensus 72 giP~A~~~a~~l~~~~~~~~~Rke~K~hG~~~~ieG~~~-----------------------------~G~kVvvVED-- 120 (201)
T COG0461 72 GIPLAAATALALAHLPPMAYVRKEAKDHGTGGLIEGGEV-----------------------------KGEKVVVVED-- 120 (201)
T ss_pred CHHHHHHHHHHHCCCCCEEEEECEECCCCCCCEEEECCC-----------------------------CCCEEEEEEE--
T ss_conf 548999999984548827998220004787651574378-----------------------------9989999972--
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCC--CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEECCCH
Q ss_conf 9999999999988989999899899989998659995--48998587889888999999998689982999906785
Q gi|254780450|r 692 SVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRV--DIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAE 766 (803)
Q Consensus 692 ~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~--dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~~t~~~~ 766 (803)
-+.+-.|..+|++++++.+... =+++.|.+ +-+++..+.. .+|++.+..+++
T Consensus 121 ---------------ViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~-------~~~~~~~~~~-g~~~~sl~tl~d 174 (201)
T COG0461 121 ---------------VITTGGSILEAVEALREAGAEVVGVAVIVDRQ-------SGAKEVLKEY-GVKLVSLVTLSD 174 (201)
T ss_pred ---------------CCCCCHHHHHHHHHHHHCCCEEEEEEEEEECC-------HHHHHHHHHC-CCCEEEEEEHHH
T ss_conf ---------------01678769999999998698598999999520-------6678889865-996688746999
No 498
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=21.99 E-value=39 Score=11.86 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=0.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 75699976988999999999998898999989989998999865999548998587889888999999998689982999
Q gi|254780450|r 681 SAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIF 760 (803)
Q Consensus 681 ~~~iLvvdD~~~~~~~~~~~L~~~g~~v~~a~~g~eal~~~~~~~~~~dlil~D~~mp~m~G~~~~~~ir~~~~~~~ii~ 760 (803)
+-+||+----.-+..-+++.+..+|-+|+.+.--.+.|+-..+..+.+.-.++|..=-. +=-+++.++.+.+|.+-|++
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~-~~~~lvewLkk~~P~lNvli 83 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRD-SRRELVEWLKKEYPNLNVLI 83 (245)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCHHEEEECCCCHH-HHHHHHHHHHHHCCCHHEEE
T ss_conf 76799937964365999999998389799965749999999860941315651320356-69999999986298611343
No 499
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit; InterPro: IPR012791 CoA-transferases catalyse the reversible transfer of of coenzyme A from CoA-thioesters to free acids, and can be divided into three families . Family I includes transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most of the family I enzymes use acetyl-CoA or succinyl-CoA as CoA donors, and are composed of two separate polypeptides, subunits A and B, which generally aggregate as heterodimers or heterotetramers. The eukaryotic enzymes, however, are generally composed of a single two-domain polypetide representing a fusion of the A and B subunits. The transfer of CoA from one substrate to another occurs via a ping pong mechanism which involves the formation of thioester bond between CoA and a conserved glutamate residue at the active site of the enzyme . This entry represents the B subunit of family I CoA-transferases, which contains the conserved active-site glutamate residue. This domain forms a three-layer alpha-beta-alpha sandwich where the central layer is a mixed beta-sheet, against which helices pack from both sides , . The active site is thought to be located at the interface of the A and B subunits and formed by loops from both subunits.; GO: 0008410 CoA-transferase activity.
Probab=21.94 E-value=39 Score=11.86 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEECCCCCC
Q ss_conf 667889789999997886688
Q gi|254780450|r 574 SDLPTKDMVLVEVEDTGIGMS 594 (803)
Q Consensus 574 ~~~~~~~~v~i~V~D~G~GI~ 594 (803)
+++++|+||-| |||||
T Consensus 12 ~EL~dG~yVNL-----GIG~P 27 (208)
T TIGR02428 12 QELKDGDYVNL-----GIGIP 27 (208)
T ss_pred HHCCCCCEEEC-----CCCCH
T ss_conf 53789889967-----87730
No 500
>pfam07536 HWE_HK HWE histidine kinase. Two-component systems, consisting of a histidine kinase and a cognate response regulator protein, represent the best-known apparatus for transducing external cues into a physiological response in bacteria. The HWE domain is found in a subset of two-component system kinases, belonging to the same superfamily as pfam00512. The family was defined by the presence of a highly conserved H residue in the kinase domain and a WxE motif in a C-terminal ATPase domain that is related to pfam02518. These proteins are found in a variety of alpha- and gamma-proteobacteria, with significant enrichment in the rhizobia.
Probab=21.84 E-value=39 Score=11.84 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4256641589999999999850799847888899999998888764300
Q gi|254780450|r 427 IAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQ 475 (803)
Q Consensus 427 isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~ 475 (803)
+.|-+||.|+.|.+.+.+-.......+.-...+..=..+..+.-+++.+
T Consensus 2 L~HRvKN~lavv~ai~~~t~r~~~s~~~~~~~~~~Rl~ALa~ah~ll~~ 50 (83)
T pfam07536 2 LNHRVKNTLAVVQSIARQTLRSAASLDEFVEAFSGRLQALSRAHDLLTR 50 (83)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 2077877999999999987225899999999999999999999999834
Done!