HHsearch alignment for GI: 254780450 and conserved domain: pfam00989

>pfam00989 PAS PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=99.32  E-value=3.2e-11  Score=96.99  Aligned_cols=109  Identities=21%  Similarity=0.281  Sum_probs=55.0

Q ss_pred             HHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHH-HHHHHHCCC-CEEEEEEEE
Q ss_conf             999998525961999929996897646798642999678045632188808820489999-998620026-714888999
Q gi|254780450|r  161 NAIDYLDHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQ-AIRTEPSHQ-KITTLDLDL  238 (803)
Q Consensus       161 ~~~~~le~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~  238 (803)
T Consensus         2 r~r~i~e~~~~~i~~~D~~g~i~~~N~a~~~l~G~~~~el~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~   79 (112)
T pfam00989         2 DLRAILESLPDGIFVVDEDGRILYVNAAAEELLGLSREEVIGKS--LLDLIPEEDDAEVAELLRQALLQGEESRGGEVSF   79 (112)
T ss_pred             HHHHHHHHHHHHEEEECCCCCEEEECCCCCCCCCCCHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf             79999983424619998999999991653322586366743752--0124575343999999999998199768877652


Q ss_pred             EEEECCEEEEEEEEEEEEECCCCCEEEEEEEEEEH
Q ss_conf             98048979999995567653888554799999860
Q gi|254780450|r  239 RRIDNGHGIPVKIVHHILASCDGKPGESRTVVVSR  273 (803)
Q Consensus       239 ~~~~~g~~~~v~~~~~~~~~~~G~~~~~~~~~~Di  273 (803)
T Consensus        80 ~~~-dG~~~~~~~~~~pi~d~~g~~-g~v~i~rDI  112 (112)
T pfam00989        80 RVP-DGRPRHVEVRASPVRDAGGEI-GFLGVLRDI  112 (112)
T ss_pred             ECC-CCCEEEEEEEEEEEECCCCCE-EEEEEEECC
T ss_conf             879-998999999999999199999-999999849