HHsearch alignment for GI: 254780450 and conserved domain: pfam08447

>pfam08447 PAS_3 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=98.25  E-value=1.8e-06  Score=63.56  Aligned_cols=87  Identities=15%  Similarity=0.168  Sum_probs=45.7

Q ss_pred             EEEECCCCCCCCCCCCHHHHCCC--CHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEEEEECCCC
Q ss_conf             99831554444454884661798--6666101111220246666555411233454048873885068999987304566
Q gi|254780450|r  310 ILRTNAHFLKLFPNCTEGDGTSN--DIFSIVHKNEKRKIIAALYDANDQKSDISPIDSPHPQDENRYFRFYISATLDRST  387 (803)
Q Consensus       310 i~~~N~a~~~l~~g~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~r~~~~~~~~~~~~~~  387 (803)
T Consensus         1 v~y~s~~~~~i~-G~~~~e~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~dG~~~wi~~~~~~~~d~   79 (90)
T pfam08447         1 IIYWSPRFEEIL-GYTPEELKSSYEDWLDLVHPEDRERVRRALQEFSLKKGEPYSGEYRIRRKDGEYRWVEARGRPIRDE   79 (90)
T ss_pred             CEEECHHHHHHH-CCCCHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEEECC
T ss_conf             999998999984-9990110799889998719056889998878888605874046899981599399999999999999


Q ss_pred             CCCCEEEEEE
Q ss_conf             7761389999
Q gi|254780450|r  388 EAPEEQAILY  397 (803)
Q Consensus       388 ~~~~~~~i~~  397 (803)
T Consensus        80 ~G~~~~~~Gi   89 (90)
T pfam08447        80 NGKPVRVIGV   89 (90)
T ss_pred             CCCEEEEEEE
T ss_conf             9999999968