HHsearch alignment for GI: 254780450 and conserved domain: pfam08448

>pfam08448 PAS_4 PAS fold. The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs. The PAS fold appears in archaea, eubacteria and eukarya.

Probab=99.31  E-value=5.7e-12  Score=102.29  Aligned_cols=108  Identities=18%  Similarity=0.163  Sum_probs=40.3

Q ss_pred             HHCCCEEEEECCCCCEEEEHHHHHHHCCCCHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEECCEE
Q ss_conf             52596199992999689764679864299967804563218880882048999999862002671488899998048979
Q gi|254780450|r  167 DHSPVGFMSADHQGKILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRRIDNGHG  246 (803)
Q Consensus       167 e~a~~gi~~~D~~g~i~~~N~~~~~llG~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~  246 (803)
T Consensus         2 d~~p~~i~~~D~~g~i~~~N~a~~~~~g~~~~~~iG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~   78 (110)
T pfam08448         2 DSLPDALAVLDPDGRVRYANAAAAELFGLPPEELLGK--TLAELLPPEDAARLERALRRALEGEEPIDFLEEL-LLNGEE   78 (110)
T ss_pred             CCCCHHHEEECCCCCEEEEEHHHHHHCCCCHHHHCCC--CCHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE-CCCCCC
T ss_conf             9857353799499969999347466709898998095--1210068034566777899997389558866430-258852


Q ss_pred             EEEEEEEEEEECCCCCEEEEEEEEEEHHHHH
Q ss_conf             9999955676538885547999998607899
Q gi|254780450|r  247 IPVKIVHHILASCDGKPGESRTVVVSRKNCD  277 (803)
Q Consensus       247 ~~v~~~~~~~~~~~G~~~~~~~~~~Dit~~k  277 (803)
T Consensus        79 ~~~~~~~~pi~d~~G~~~g~v~~~~DITerK  109 (110)
T pfam08448        79 RHYELRLTPLRDPDGEVIGVLVISRDITERR  109 (110)
T ss_pred             EEEEEEEEEEECCCCCEEEEEEEEEECCHHC
T ss_conf             0004357668989999999999999883312