HHsearch alignment for GI: 254780450 and conserved domain: pfam08670

>pfam08670 MEKHLA MEKHLA domain. The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.

Probab=96.44  E-value=0.073  Score=31.05  Aligned_cols=105  Identities=12%  Similarity=0.011  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHCCCEEEEEC--CCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             18999999852498099995--9993898106688670999567315611000278761678999999983243232038
Q gi|254780450|r   25 KIPLETIFMDSEPEGILITN--ERGHIIYANNAYNALTNAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEF  102 (803)
Q Consensus        25 ~~~~~r~lld~~~d~i~v~D--~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~  102 (803)
T Consensus        30 ~~~~~k~L~-~ap~ail~h~~~~dP~f~yaN~aaL~l~e~~w~el~~lpsr~tae~~~r~~r~~~l~~v~~qG~~~~y--  106 (148)
T pfam08670        30 GDSLLKALW-HHPDAVLCHSLKADPVFNYANQAALDLLETTWVELQDLPSRKTAEESGRKERCSELAKVMQQGFACLY--  106 (148)
T ss_pred             HHHHHHHHH-CCCCEEEECCCCCCCEEEEHHHHHHHHHCCCHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHCCCCCCC--
T ss_conf             789999996-39978997679989746541499999966889998459666516835289999989999981863378--


Q ss_pred             EEEECCEEECCCCCEEEEEEEEEEEEECCCCCEE
Q ss_conf             9860100004898679999999999823788069
Q gi|254780450|r  103 RLMQSLNNYSQNSEPHWYRLKARVLPISLHKEKL  136 (803)
Q Consensus       103 ~~~~~~~~~~~~g~~~w~~i~~~~~~~~~~~~~~  136 (803)
T Consensus       107 ----~GiRiss~Grrf~ie~a~vW~v~d~~g~~~  136 (148)
T pfam08670       107 ----SGVRISSMGRRFSIEQAVAWKLLDEDGAYH  136 (148)
T ss_pred             ----CEEEECCCCCEEEECCEEEEEEECCCCCEE
T ss_conf             ----816882799889991279988885889889