HHsearch alignment for GI: 254780450 and conserved domain: smart00086

>smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain). PAC motif occurs C-terminal to a subset of all known PAS motifs. It is proposed to contribute to the PAS domain fold.
Probab=94.56  E-value=0.12  Score=29.64  Aligned_cols=32  Identities=22%  Similarity=0.094  Sum_probs=14.6

Q ss_pred             CEEEEEEEEEEEEECCCCCEEEEEEEEEEHHH
Q ss_conf             97999999556765388855479999986078
Q gi|254780450|r  244 GHGIPVKIVHHILASCDGKPGESRTVVVSRKN  275 (803)
Q Consensus       244 g~~~~v~~~~~~~~~~~G~~~~~~~~~~Dit~  275 (803)
T Consensus        11 G~~~w~~~~~~~~~~~~g~~~~~i~~~~DIte   42 (43)
T smart00086       11 GSYIWVLVSASPIRDEDGEVEGILGVVRDITE   42 (43)
T ss_pred             CCEEEEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf             99999999999999989899999999971779