HHsearch alignment for GI: 254780450 and conserved domain: smart00091

>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=97.98  E-value=2.6e-06  Score=62.42  Aligned_cols=50  Identities=24%  Similarity=0.256  Sum_probs=32.3

Q ss_pred             HHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCC
Q ss_conf             99999852498099995999389810668867099956731561100027
Q gi|254780450|r   28 LETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSR   77 (803)
Q Consensus        28 ~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~   77 (803)
T Consensus         2 ~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~   51 (67)
T smart00091        2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIH   51 (67)
T ss_pred             HHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCC
T ss_conf             79999996557985886999489988599998890999995998999469