HHsearch alignment for GI: 254780450 and conserved domain: smart00091
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=97.98 E-value=2.6e-06 Score=62.42 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=32.3
Q ss_pred HHHHHHHHCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCCCCHHHHCC
Q ss_conf 99999852498099995999389810668867099956731561100027
Q gi|254780450|r 28 LETIFMDSEPEGILITNERGHIIYANNAYNALTNAVWNKRTKSLESLLSR 77 (803)
Q Consensus 28 ~~r~lld~~~d~i~v~D~~G~i~~~N~a~~~l~G~~~~~~~~~~~~~~~~ 77 (803)
T Consensus 2 ~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~e~~g~~~~~~~~ 51 (67)
T smart00091 2 RLRAILESLPDGIFVLDLDGRILYANPAAEELLGYSPEELIGKSLLELIH 51 (67)
T ss_pred HHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCC
T ss_conf 79999996557985886999489988599998890999995998999469