HHsearch alignment for GI: 254780450 and conserved domain: smart00388

>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.

Probab=98.92  E-value=2.5e-09  Score=83.72  Aligned_cols=65  Identities=25%  Similarity=0.216  Sum_probs=55.5

Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             687630342566415899999999998507998478888999999988887643004542120058
Q gi|254780450|r  420 VGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFSRKQTM  485 (803)
Q Consensus       420 ~~~~~a~isHelr~pL~~I~g~~~ll~~~~~~~~~~~~~l~~i~~~~~r~~~li~~lLd~sr~~~~  485 (803)
T Consensus         2 ~~~~~~~isHelrtPL~~i~~~~~~l~~-~~~~~~~~~~~~~i~~~~~~~~~li~~il~~sr~~~~   66 (66)
T smart00388        2 KREFLANLSHELRTPLTAIRGYLELLED-TELSEEQREYLETILRSAERLLRLINDLLDLSRIEAG   66 (66)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             8899999769870818889999886530-2799999999998899999999999999999873699