BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780450|ref|YP_003064863.1| two-component sensor histidine
kinase/response regulator hybrid protein [Candidatus Liberibacter
asiaticus str. psy62]
(803 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 1657 bits (4290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/803 (100%), Positives = 803/803 (100%)
Query: 1 MLAIVGILLLLLLAIGSIEMTIKPKIPLETIFMDSEPEGILITNERGHIIYANNAYNALT 60
MLAIVGILLLLLLAIGSIEMTIKPKIPLETIFMDSEPEGILITNERGHIIYANNAYNALT
Sbjct: 1 MLAIVGILLLLLLAIGSIEMTIKPKIPLETIFMDSEPEGILITNERGHIIYANNAYNALT 60
Query: 61 NAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHWY 120
NAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHWY
Sbjct: 61 NAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHWY 120
Query: 121 RLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQG 180
RLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQG
Sbjct: 121 RLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQG 180
Query: 181 KILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRR 240
KILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRR
Sbjct: 181 KILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRR 240
Query: 241 IDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMA 300
IDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMA
Sbjct: 241 IDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMA 300
Query: 301 IASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDI 360
IASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDI
Sbjct: 301 IASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDI 360
Query: 361 SPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAV 420
SPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAV
Sbjct: 361 SPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAV 420
Query: 421 GTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFS 480
GTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFS
Sbjct: 421 GTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFS 480
Query: 481 RKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNL 540
RKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNL
Sbjct: 481 RKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNL 540
Query: 541 CVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEK 600
CVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEK
Sbjct: 541 CVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEK 600
Query: 601 IFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQES 660
IFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQES
Sbjct: 601 IFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQES 660
Query: 661 HYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKV 720
HYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKV
Sbjct: 661 HYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKV 720
Query: 721 MEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFS 780
MEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFS
Sbjct: 721 MEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFS 780
Query: 781 FLSKPFSLKQLATSVHELLQSDS 803
FLSKPFSLKQLATSVHELLQSDS
Sbjct: 781 FLSKPFSLKQLATSVHELLQSDS 803
>gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 122
Score = 73.2 bits (178), Expect = 1e-14, Method: Composition-based stats.
Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 8/119 (6%)
Query: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDAL-KVMEKLQGRVDIVISDVVMPEMDG 742
+LL ED+D +RR + L GY V +G A KV E+ ++++D+VMPEMDG
Sbjct: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMDG 61
Query: 743 PTLLRELRKTYPSLKFIFISGYAEDAFS--KNLPKDAKFSFLSKPFSLKQLATSVHELL 799
L R + P LK +FI+G+A A + N PK+AK LSKPF L+ L V+ LL
Sbjct: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118
>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 820
Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 35/278 (12%)
Query: 400 EITEQKALEARMAQTQKL-----NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDA 454
+I+E K + +++ +K+ + ++H+ LTAI+ S+ ++ R
Sbjct: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPL 618
Query: 455 SFADLMEIKHNANRAAILV----RQLLAFSR----KQTMRLTVLNLTEVIGNLRMMIQKL 506
+E + +R+ LV LL S+ K + ++L E + ++Q L
Sbjct: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-L 677
Query: 507 ISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPST 566
+ ++ + + ++ + DL +Q+ +N+ NA H G + + T
Sbjct: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH--FTPSGGQIIIST------ 729
Query: 567 EIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF----TTKKVGEGTGLGLSVV 622
HT N + V++ V DTG+GM+ +EK +PF + + GEGTGLGL +
Sbjct: 730 -THTSN-------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781
Query: 623 YGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQES 660
++ + G S KGT+ I P Y H +
Sbjct: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819
>gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 766
Score = 46.2 bits (108), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 582 VLVEVEDTGIGMSPDIMEKIFEPF-----FTTKKVGEGTGLGLSVVYGIIRQSGGYILPE 636
V++ + DTGIG+ +EKI +PF + +G G GLGL++ + GG +
Sbjct: 693 VIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIG-GFGLGLAISDALTNLHGGRLKII 751
Query: 637 SEVGKGTIFRIFLPR 651
S+ GKGTI I +P+
Sbjct: 752 SQEGKGTIVTICMPQ 766
>gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus
str. psy62]
Length = 123
Score = 41.6 bits (96), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGP 743
V++VED + + + ++ET GY + +G +AL++ Q + D++I D+ + E+ G
Sbjct: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGL 62
Query: 744 TLLRELRK--TYPSLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSL 788
+ +++++ + I ++ +A + + K +++SKP SL
Sbjct: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109
>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
str. psy62]
Length = 236
Score = 37.7 bits (86), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGP 743
+LL+ED+ ++ + ML++ + V+ G D +++ + + D +I D+ + ++ G
Sbjct: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
Query: 744 TLLRELRKTYPSLKFIFISGYA--EDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800
+LR LR S +SG + ED + L A ++SKPF+ ++L + +++
Sbjct: 61 EVLRALRVAKISTPVCILSGMSSIEDKV-RGLQSGAD-DYISKPFNKEELVARIRAIVR 117
>gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 792
Score = 35.0 bits (79), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 583 LVEVEDTGIGMSPDIMEKIFEPFFTTKKVGE--GTGLGLSVVYGIIRQSGGYI-LPESEV 639
+ V++ G + D+ + +F F + G+ G GLGLS+V I GG++ + S+
Sbjct: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779
Query: 640 GKGTI 644
G TI
Sbjct: 780 GVTTI 784
>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
regulatory protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 495
Score = 34.3 bits (77), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 117/275 (42%), Gaps = 40/275 (14%)
Query: 402 TEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRS--SDASFADL 459
T ++A E +A+++ L ++H+ L AIL S+ + L++ ++ ++ +
Sbjct: 238 TRKRAEEENLAKSRFL-------ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290
Query: 460 MEIKHNANRAAI-LVRQLLAFSRKQTMRL----TVLNLTEVIGNLRMMIQKLISEPPQVK 514
+ H + + + L+ ++L SR + R + ++L +++ +M+Q L ++ ++
Sbjct: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ-LRAQEKNIE 349
Query: 515 LTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYS 574
+ + L V D QV++NL NA V+ I T ++
Sbjct: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNA-------------VKFTAIGGRVHVTVGWT 396
Query: 575 DLPTKDMVLVEVEDTGIGMS----PDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSG 630
+ + ++D G G++ P ++ + K +G GLGL + I+ G
Sbjct: 397 SGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453
Query: 631 GYILPESEVGKGTIFRIFLP-----RYVQEHTQES 660
G L S++ +G LP ++ E ES
Sbjct: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 30.0 bits (66), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 122 LKARVLPISLHKEKLLYAWR--ITDITSERKDQEKFFRELQNAIDYLDHSPVGFMS 175
L+ RVLPI KEKLL A R +T + ++ + +N + L+ PV FM
Sbjct: 725 LRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG 780
>gi|254780461|ref|YP_003064874.1| 3-oxoacyl-(acyl carrier protein) synthase I [Candidatus
Liberibacter asiaticus str. psy62]
Length = 406
Score = 28.5 bits (62), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 660 SHYSHD--IAIIPQEEPAD---LTGNSAIVLLVEDEDSVRRGSKRMLETRGY 706
SH++HD A P + D ++G +A+++L E E + RG+K E GY
Sbjct: 208 SHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTGY 259
>gi|254780671|ref|YP_003065084.1| putative cell division protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 105
Score = 25.8 bits (55), Expect = 2.7, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 66 KRTKSLE-SLLSRNQ---EASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQN 114
K KSLE SL+ R + E E RL ++L S+GS E L+ YS N
Sbjct: 39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLN 91
>gi|254780843|ref|YP_003065256.1| glucose/galactose transporter [Candidatus Liberibacter asiaticus
str. psy62]
Length = 420
Score = 25.8 bits (55), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 279 GDPSGTIANMRFNRFFNNIPMAI 301
GDP+ ++ + F +FFN++ AI
Sbjct: 131 GDPNTAVSRLTFAQFFNSLGTAI 153
>gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 707
Score = 25.4 bits (54), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 495 VIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESG 554
V+GN + I + + PP+ D+E LW D +++ + M+ ++G
Sbjct: 607 VLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKYMIIKNG 666
Query: 555 SLTV 558
+ V
Sbjct: 667 NPKV 670
>gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 133
Score = 25.4 bits (54), Expect = 3.9, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG 742
+LLV+ VR+ + + G+ V EA S +A + EK +++ + +V+ E M+G
Sbjct: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-----ELLPNYLVIDESMEG 58
Query: 743 PTLLRELRKTYPSLKFIFISG-YAEDAFSKNL--PKDAKFSFLSKPFSLKQLATSVHELL 799
+ P +F+ E F K + + SFL KPF+ + L ++ EL
Sbjct: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118
Query: 800 Q 800
Q
Sbjct: 119 Q 119
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 24.6 bits (52), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 71 LESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHWYRLKAR 125
L + R++ AS AL+ L + L + + R++QSLN + Y L R
Sbjct: 924 LRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIR 978
>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 461
Score = 24.6 bits (52), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 278 SGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGD 328
+G P G + M ++F +NIP+ + S + I + H LF N +GD
Sbjct: 40 AGIPRGKM--MPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGD 88
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,740
Number of Sequences: 1233
Number of extensions: 20489
Number of successful extensions: 73
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 17
length of query: 803
length of database: 328,796
effective HSP length: 81
effective length of query: 722
effective length of database: 228,923
effective search space: 165282406
effective search space used: 165282406
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)