BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] (803 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 1657 bits (4290), Expect = 0.0, Method: Compositional matrix adjust. Identities = 803/803 (100%), Positives = 803/803 (100%) Query: 1 MLAIVGILLLLLLAIGSIEMTIKPKIPLETIFMDSEPEGILITNERGHIIYANNAYNALT 60 MLAIVGILLLLLLAIGSIEMTIKPKIPLETIFMDSEPEGILITNERGHIIYANNAYNALT Sbjct: 1 MLAIVGILLLLLLAIGSIEMTIKPKIPLETIFMDSEPEGILITNERGHIIYANNAYNALT 60 Query: 61 NAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHWY 120 NAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHWY Sbjct: 61 NAVWNKRTKSLESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHWY 120 Query: 121 RLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQG 180 RLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQG Sbjct: 121 RLKARVLPISLHKEKLLYAWRITDITSERKDQEKFFRELQNAIDYLDHSPVGFMSADHQG 180 Query: 181 KILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRR 240 KILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRR Sbjct: 181 KILYINATLAEWIGIDLTTFTSKSISIGDITAGEGLALIQAIRTEPSHQKITTLDLDLRR 240 Query: 241 IDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMA 300 IDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMA Sbjct: 241 IDNGHGIPVKIVHHILASCDGKPGESRTVVVSRKNCDSGDPSGTIANMRFNRFFNNIPMA 300 Query: 301 IASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDI 360 IASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDI Sbjct: 301 IASIDKKGRILRTNAHFLKLFPNCTEGDGTSNDIFSIVHKNEKRKIIAALYDANDQKSDI 360 Query: 361 SPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAV 420 SPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAV Sbjct: 361 SPIDSPHPQDENRYFRFYISATLDRSTEAPEEQAILYTVEITEQKALEARMAQTQKLNAV 420 Query: 421 GTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFS 480 GTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFS Sbjct: 421 GTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIKHNANRAAILVRQLLAFS 480 Query: 481 RKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNL 540 RKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNL Sbjct: 481 RKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNL 540 Query: 541 CVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEK 600 CVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEK Sbjct: 541 CVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEK 600 Query: 601 IFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQES 660 IFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQES Sbjct: 601 IFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQES 660 Query: 661 HYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKV 720 HYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKV Sbjct: 661 HYSHDIAIIPQEEPADLTGNSAIVLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKV 720 Query: 721 MEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFS 780 MEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFS Sbjct: 721 MEKLQGRVDIVISDVVMPEMDGPTLLRELRKTYPSLKFIFISGYAEDAFSKNLPKDAKFS 780 Query: 781 FLSKPFSLKQLATSVHELLQSDS 803 FLSKPFSLKQLATSVHELLQSDS Sbjct: 781 FLSKPFSLKQLATSVHELLQSDS 803 >gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 122 Score = 73.2 bits (178), Expect = 1e-14, Method: Composition-based stats. Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 8/119 (6%) Query: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDAL-KVMEKLQGRVDIVISDVVMPEMDG 742 +LL ED+D +RR + L GY V +G A KV E+ ++++D+VMPEMDG Sbjct: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMDG 61 Query: 743 PTLLRELRKTYPSLKFIFISGYAEDAFS--KNLPKDAKFSFLSKPFSLKQLATSVHELL 799 L R + P LK +FI+G+A A + N PK+AK LSKPF L+ L V+ LL Sbjct: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 >gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 59.3 bits (142), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 35/278 (12%) Query: 400 EITEQKALEARMAQTQKL-----NAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDA 454 +I+E K + +++ +K+ + ++H+ LTAI+ S+ ++ R Sbjct: 560 DISEWKQEKNKLSHAKKIAEKESSHKSDFLARVSHEIRTPLTAIIGFSE-VIKNQRFGPL 618 Query: 455 SFADLMEIKHNANRAAILV----RQLLAFSR----KQTMRLTVLNLTEVIGNLRMMIQKL 506 +E + +R+ LV LL S+ K + ++L E + ++Q L Sbjct: 619 GNPRYIEYANYIDRSGNLVLDIVNDLLDISKIESGKMNLHFEPVSLDEAVSEAISLVQ-L 677 Query: 507 ISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPST 566 + ++ + + ++ + DL +Q+ +N+ NA H G + + T Sbjct: 678 YANEKRILIRTSFANNIPRILADLRSVKQIALNILSNAIH--FTPSGGQIIIST------ 729 Query: 567 EIHTFNYSDLPTKDMVLVEVEDTGIGMSPDIMEKIFEPFF----TTKKVGEGTGLGLSVV 622 HT N + V++ V DTG+GM+ +EK +PF + + GEGTGLGL + Sbjct: 730 -THTSN-------EEVILRVRDTGVGMTNYELEKAMKPFGQIPNSQQIRGEGTGLGLPLA 781 Query: 623 YGIIRQSGGYILPESEVGKGTIFRIFLPRYVQEHTQES 660 ++ + G S KGT+ I P Y H + Sbjct: 782 KAMVDANMGKFYIFSTPAKGTLIEIIFPLYDTSHPHDC 819 >gi|254780903|ref|YP_003065316.1| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 766 Score = 46.2 bits (108), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%) Query: 582 VLVEVEDTGIGMSPDIMEKIFEPF-----FTTKKVGEGTGLGLSVVYGIIRQSGGYILPE 636 V++ + DTGIG+ +EKI +PF + +G G GLGL++ + GG + Sbjct: 693 VIITIADTGIGIPKSALEKIGQPFEPLHNQYDQSIG-GFGLGLAISDALTNLHGGRLKII 751 Query: 637 SEVGKGTIFRIFLPR 651 S+ GKGTI I +P+ Sbjct: 752 SQEGKGTIVTICMPQ 766 >gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 123 Score = 41.6 bits (96), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 58/107 (54%), Gaps = 4/107 (3%) Query: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGP 743 V++VED + + + ++ET GY + +G +AL++ Q + D++I D+ + E+ G Sbjct: 5 VMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELAR--QHKPDVIIMDIQLQEISGL 62 Query: 744 TLLRELRK--TYPSLKFIFISGYAEDAFSKNLPKDAKFSFLSKPFSL 788 + +++++ + I ++ +A + + K +++SKP SL Sbjct: 63 EITKQIKEDSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISL 109 >gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 236 Score = 37.7 bits (86), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Query: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPEMDGP 743 +LL+ED+ ++ + ML++ + V+ G D +++ + + D +I D+ + ++ G Sbjct: 3 ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60 Query: 744 TLLRELRKTYPSLKFIFISGYA--EDAFSKNLPKDAKFSFLSKPFSLKQLATSVHELLQ 800 +LR LR S +SG + ED + L A ++SKPF+ ++L + +++ Sbjct: 61 EVLRALRVAKISTPVCILSGMSSIEDKV-RGLQSGAD-DYISKPFNKEELVARIRAIVR 117 >gi|255764476|ref|YP_003065238.2| two-component sensor histidine kinase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 792 Score = 35.0 bits (79), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 583 LVEVEDTGIGMSPDIMEKIFEPFFTTKKVGE--GTGLGLSVVYGIIRQSGGYI-LPESEV 639 + V++ G + D+ + +F F + G+ G GLGLS+V I GG++ + S+ Sbjct: 720 IFSVKNNGSSIPEDMCKSVFNRFVSNAHRGQRRGVGLGLSIVESFINLHGGHVSISSSDE 779 Query: 640 GKGTI 644 G TI Sbjct: 780 GVTTI 784 >gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] Length = 495 Score = 34.3 bits (77), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/275 (20%), Positives = 117/275 (42%), Gaps = 40/275 (14%) Query: 402 TEQKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRS--SDASFADL 459 T ++A E +A+++ L ++H+ L AIL S+ + L++ ++ ++ + Sbjct: 238 TRKRAEEENLAKSRFL-------ASMSHELRTPLNAILGFSEVIELETMGPLNNETYKEY 290 Query: 460 MEIKHNANRAAI-LVRQLLAFSRKQTMRL----TVLNLTEVIGNLRMMIQKLISEPPQVK 514 + H + + + L+ ++L SR + R + ++L +++ +M+Q L ++ ++ Sbjct: 291 IGDIHRSGQHLLNLINEILDLSRIEAGRYELSESAISLIDIVRECIIMLQ-LRAQEKNIE 349 Query: 515 LTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYS 574 + + L V D QV++NL NA V+ I T ++ Sbjct: 350 IFQKIDPSLSSVWADEKGMRQVILNLLSNA-------------VKFTAIGGRVHVTVGWT 396 Query: 575 DLPTKDMVLVEVEDTGIGMS----PDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSG 630 + + ++D G G++ P ++ + K +G GLGL + I+ G Sbjct: 397 SGRGQ---YISIKDNGPGIAEGEIPTVLTSFGQGSIAIKSAEQGVGLGLPIAQSIMANHG 453 Query: 631 GYILPESEVGKGTIFRIFLP-----RYVQEHTQES 660 G L S++ +G LP ++ E ES Sbjct: 454 GQFLIRSKLREGVEVIAILPNTRVLNFIPEDNHES 488 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 30.0 bits (66), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%) Query: 122 LKARVLPISLHKEKLLYAWR--ITDITSERKDQEKFFRELQNAIDYLDHSPVGFMS 175 L+ RVLPI KEKLL A R +T + ++ + +N + L+ PV FM Sbjct: 725 LRGRVLPIGGLKEKLLAALRAGVTKVLIPEENIKDLMDIPENVKNGLEIIPVSFMG 780 >gi|254780461|ref|YP_003064874.1| 3-oxoacyl-(acyl carrier protein) synthase I [Candidatus Liberibacter asiaticus str. psy62] Length = 406 Score = 28.5 bits (62), Expect = 0.44, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Query: 660 SHYSHD--IAIIPQEEPAD---LTGNSAIVLLVEDEDSVRRGSKRMLETRGY 706 SH++HD A P + D ++G +A+++L E E + RG+K E GY Sbjct: 208 SHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTGY 259 >gi|254780671|ref|YP_003065084.1| putative cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 105 Score = 25.8 bits (55), Expect = 2.7, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Query: 66 KRTKSLE-SLLSRNQ---EASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQN 114 K KSLE SL+ R + E E RL ++L S+GS E L+ YS N Sbjct: 39 KANKSLEKSLIERERFLSELKENRSRLERKVKLMSDGSLEKDLLDEKARYSLN 91 >gi|254780843|ref|YP_003065256.1| glucose/galactose transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 420 Score = 25.8 bits (55), Expect = 3.0, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 16/23 (69%) Query: 279 GDPSGTIANMRFNRFFNNIPMAI 301 GDP+ ++ + F +FFN++ AI Sbjct: 131 GDPNTAVSRLTFAQFFNSLGTAI 153 >gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62] Length = 707 Score = 25.4 bits (54), Expect = 3.7, Method: Compositional matrix adjust. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 495 VIGNLRMMIQKLISEPPQVKLTVDYERDLWGVKTDLSQFEQVLVNLCVNAHHAIMLKESG 554 V+GN + I + + PP+ D+E LW D +++ + M+ ++G Sbjct: 607 VLGNTPVNINESMLMPPRGMSKTDFEDRLWYATKDTGEYDPYTIKYMNVGSGKYMIIKNG 666 Query: 555 SLTV 558 + V Sbjct: 667 NPKV 670 >gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 133 Score = 25.4 bits (54), Expect = 3.9, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDALKVMEKLQGRVDIVISDVVMPE-MDG 742 +LLV+ VR+ + + G+ V EA S +A + EK +++ + +V+ E M+G Sbjct: 4 LLLVDSSHIVRKVGRHLFNDFGFMVFEATSVCEAREFCEK-----ELLPNYLVIDESMEG 58 Query: 743 PTLLRELRKTYPSLKFIFISG-YAEDAFSKNL--PKDAKFSFLSKPFSLKQLATSVHELL 799 + P +F+ E F K + + SFL KPF+ + L ++ EL Sbjct: 59 VLEFIAHVRQMPLGTDVFVYYLLMEVDFEKMIAGARAGANSFLLKPFNRETLRFAMRELP 118 Query: 800 Q 800 Q Sbjct: 119 Q 119 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 24.6 bits (52), Expect = 5.8, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 71 LESLLSRNQEASEALYRLINSLRLKSEGSEEFRLMQSLNNYSQNSEPHWYRLKAR 125 L + R++ AS AL+ L + L + + R++QSLN + Y L R Sbjct: 924 LRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIR 978 >gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 24.6 bits (52), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Query: 278 SGDPSGTIANMRFNRFFNNIPMAIASIDKKGRILRTNAHFLKLFPNCTEGD 328 +G P G + M ++F +NIP+ + S + I + H LF N +GD Sbjct: 40 AGIPRGKM--MPSSKFISNIPLTVPSAIYRHTISGESLHSPYLFHNERDGD 88 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.134 0.379 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 487,740 Number of Sequences: 1233 Number of extensions: 20489 Number of successful extensions: 73 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 51 Number of HSP's gapped (non-prelim): 17 length of query: 803 length of database: 328,796 effective HSP length: 81 effective length of query: 722 effective length of database: 228,923 effective search space: 165282406 effective search space used: 165282406 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 42 (20.8 bits)