HHsearch alignment for GI: 254780451 and conserved domain: COG0065
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism].
Probab=100.00 E-value=0 Score=777.37 Aligned_cols=412 Identities=29% Similarity=0.452 Sum_probs=344.2
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHH
Q ss_conf 65799999998612355457776636453252200000357999999999999971999999287898139986832110
Q gi|254780451|r 58 CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVD 137 (896)
Q Consensus 58 ~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd 137 (896)
T Consensus 3 ~Tl~eKI~~~h~~~--~~~~~G~~~~~~iD~~l~HdvTsP~a~---~~lr~~g~-kV~~p~k------~~~~~DH~vPt~ 70 (423)
T COG0065 3 KTLYEKILDAHVGK--EEVGAGETVLLYIDLHLVHDVTSPQAF---EGLREAGR-KVRDPEK------TVATFDHNVPTP 70 (423)
T ss_pred CCHHHHHHHHHCCC--CCCCCCCCEEEEEEEEEEECCCCHHHH---HHHHHHCC-CCCCCCC------EEEEECCCCCCC
T ss_conf 43899999874165--557899837999402545336548999---99998398-1247351------699704779985
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-EEEECCC-CCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEEC
Q ss_conf 05998899989998875426789999877421488-0786088-762167789863351131036886179830-13206
Q gi|254780451|r 138 YSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKN-FRVVPPG-TGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGT 214 (896)
Q Consensus 138 ~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~-~~v~pPG-~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGt 214 (896)
T Consensus 71 ~---~~~a--~~~~~lr~~~k----------e~-Gi~~~~~~g~~GI~H~v~pE-------------~G~~~PG~~Iv~g 121 (423)
T COG0065 71 D---IKAA--EQQKELRENAK----------EF-GIVNFYDVGDQGIVHQVGPE-------------QGLTLPGMTIVGG 121 (423)
T ss_pred C---HHHH--HHHHHHHHHHH----------HH-CCEEEECCCCCCEEEEEECC-------------CCCCCCCCEEEEC
T ss_conf 5---7789--99999999999----------84-99045037888577897122-------------2666898689942
Q ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 88764445201232034348999997077514116728999997677864436889999999841022121279996155
Q gi|254780451|r 215 DSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSG 294 (896)
Q Consensus 215 DSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~g 294 (896)
T Consensus 122 DSHT~T~GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~G~t~~aiEf~Ge~ 201 (423)
T COG0065 122 DSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEA 201 (423)
T ss_pred CCCCCCCHHHHHHHCCCCHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 66764442357651076689999999819564545614899993425899539999999999856387635899996554
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 00178756321200010037203775199899999986399988999999874641023676766788630699998031
Q gi|254780451|r 295 FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGN 374 (896)
Q Consensus 295 i~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ 374 (896)
T Consensus 202 i~~lsme~RmTicNMaIE~GAkaGii~pDe~T~~Y~k-------------~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~ 268 (423)
T COG0065 202 IRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLK-------------EWDGAVAYWKTLKSDEDAVYDKVVELDASD 268 (423)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHH-------------HHHCCCCCCCEECCCCCCCEEEEEEEECCC
T ss_conf 2328922210053554652662202477676899999-------------874122455040379997035899988123
Q ss_pred CCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 43012265665641367773011668766400110023210245788888755544575310467654599987788999
Q gi|254780451|r 375 VSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLA 454 (896)
Q Consensus 375 ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllA 454 (896)
T Consensus 269 leP~Va~p~~p~nv~~v~e~~~~~-----------------------------i~iDqVFIGSCTNgRieDLr~AA~Il- 318 (423)
T COG0065 269 LEPQVAWPTNPDNVVPVSEVEPDP-----------------------------IKIDQVFIGSCTNGRIEDLRAAAEIL- 318 (423)
T ss_pred CCCEEECCCCCCCCEECCCCCCCC-----------------------------EEEEEEEEECCCCCCHHHHHHHHHHH-
T ss_conf 771144797702110644446886-----------------------------15345999566775579999999996-
Q ss_pred HHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCC-CCCCCCHHHHHCCCCCEEEEEEE
Q ss_conf 88986498758673079701618999999985885777750530205532242127-77688302210113663587863
Q gi|254780451|r 455 RNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGN-SGALKKEISEVIHQKSLVVAGVL 533 (896)
Q Consensus 455 kkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGn-sG~l~~~i~~~i~~~~l~~~sV~ 533 (896)
T Consensus 319 -----kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~~g--------E---~c~S 382 (423)
T COG0065 319 -----KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLGPG--------E---RCAS 382 (423)
T ss_pred -----CCCCCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCC--------C---EEEE
T ss_conf -----36766888159996596999999998067999996690884798740205598737999--------7---7853
Q ss_pred CCCCCCCCCCC-CCCCCEEECCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 36766665468-5433100059789999985161222310023
Q gi|254780451|r 534 SGNRNFEGRIS-PDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896)
Q Consensus 534 SgNRNFeGR~~-p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896)
T Consensus 383 TSNRNF~GRqG~~~a~-~yL~SPA~AAAaAv~G~i-----~dp 419 (423)
T COG0065 383 TSNRNFEGRQGSPGAR-TYLASPAMAAAAAVEGEI-----VDP 419 (423)
T ss_pred CCCCCCCCCCCCCCCE-EEECCHHHHHHHHHCCEE-----CCH
T ss_conf 2688877667999875-884598999998850785-----673