HHsearch alignment for GI: 254780451 and conserved domain: PRK01641
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional.
Probab=99.71 E-value=9.5e-17 Score=141.46 Aligned_cols=158 Identities=24% Similarity=0.361 Sum_probs=103.0
Q ss_pred EEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCC-CCE
Q ss_conf 5899965885723316456555447378889874988656314565302357776652036012232125777657-722
Q gi|254780451|r 667 RILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKG-GYT 745 (896)
Q Consensus 667 rvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~eg-g~T 745 (896)
T Consensus 10 ~a~pl~~~nIDTD~IiP~----------rfLk~--~~~~gl-------------g~~lF~d~R~~~-----~g~~~~dF~ 59 (201)
T PRK01641 10 LAVPLDRANVDTDQIIPK----------QFLKR--ITRTGF-------------GKHLFDDWRYLD-----DGQPNPDFV 59 (201)
T ss_pred EEEECCCCCCCCCCCCHH----------HHCCC--CCHHHH-------------HHHHCCCCCCCC-----CCCCCCCCC
T ss_conf 998468777772128269----------87597--886265-------------886220121468-----999787755
Q ss_pred EECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 45389978737999998998199889994677786730799988667617089997647898885053552322331789
Q gi|254780451|r 746 IHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKG 825 (896)
Q Consensus 746 ~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~ 825 (896)
T Consensus 60 LN~~~------------~~~a~---ILvag~NFGCGSSREhAvwAL~d~Gir~VIA~SFadIF~~Nc~kNGlLpI~L~~- 123 (201)
T PRK01641 60 LNQPR------------YQGAS---ILLAGENFGCGSSREHAPWALADYGFRVVIAPSFADIFYGNCFKNGLLPIVLPE- 123 (201)
T ss_pred CCCCC------------CCCCE---EEEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCEEECCH-
T ss_conf 67756------------68981---899678767775088999999985998999725999999889874976065099-
Q ss_pred CCHHHHC----CCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCC
Q ss_conf 8988819----89743899726322589973899998189967999999873899999999909
Q gi|254780451|r 826 ISWKNLN----IKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNG 885 (896)
Q Consensus 826 ~~~~~L~----l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~G 885 (896)
T Consensus 124 ~~i~~L~~~~~~~p~~~i~IDL-~----~q~I----~~~~-~~~~F~----I-d~~~k~~LL~G 172 (201)
T PRK01641 124 EEVDELFKLVEANPGAELTVDL-E----AQTV----TAPD-KTYPFE----I-DEFRRHCLLNG 172 (201)
T ss_pred HHHHHHHHHHHCCCCCEEEEEE-C----CCEE----EECC-EEEEEE----E-CHHHHHHHHHC
T ss_conf 9999999999719997468970-4----5889----9399-458889----8-99999999919