HHsearch alignment for GI: 254780451 and conserved domain: cd01351
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=0 Score=860.86 Aligned_cols=388 Identities=36% Similarity=0.569 Sum_probs=344.2
Q ss_pred HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52200000357999999999999971999999287898139986832110059988999899988754267899998774
Q gi|254780451|r 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896)
Q Consensus 88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896)
T Consensus 1 Rvl~hD~Tgp~a~~~~~~~~~--------~~~v~dp~~v~~v~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEILAA--------LGKVADPSQIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEECCCHHHHHHHHHCCC--------CCCCCCCCCEEEEECCCCCCCC---------------HHHHHHHHHHHHHH
T ss_conf 946774653999999997489--------8877898667998688788888---------------66599999999999
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCE
Q ss_conf 214880786088762167789863351131036886179830-1320688764445201232034348999997077514
Q gi|254780451|r 168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPIS 246 (896)
Q Consensus 168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~ 246 (896)
T Consensus 58 ~~~-gi~~~~~g~GI~H~v~~E~--------------~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~~~ 122 (389)
T cd01351 58 ALQ-GIAFYRPGVGIIHQIMVEN--------------LALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAW 122 (389)
T ss_pred HHC-CCEEECCCCCCCCEECHHC--------------CCCCCCEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCC
T ss_conf 982-9848898996175360301--------------6899987983786766688332379767899999998149362
Q ss_pred ECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHH
Q ss_conf 11672899999767786443688999999984102212127999615500178756321200010037203775199899
Q gi|254780451|r 247 MLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326 (896)
Q Consensus 247 ~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T 326 (896)
T Consensus 123 ~~vPeti~v~l~G~l~~gv~~KDviL~i~~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~tl~NMa~E~GA~~gi~~~D~~t 202 (389)
T cd01351 123 LKKPEVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTT 202 (389)
T ss_pred CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 54897899999833699988999999999997326766279999771122389888654542001047407996586889
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHC
Q ss_conf 99998639998899999987464102367676678863069999803143012265665641367773011668766400
Q gi|254780451|r 327 IDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYY 406 (896)
Q Consensus 327 ~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~ 406 (896)
T Consensus 203 ~~yl~~~~~~~~~~~~~~~-------~~~l~~D~dA~Y~~~i~iDls~leP~vA~P~~pdnv~~v~e~~----------- 264 (389)
T cd01351 203 LKWLEATGRPLLKNLWLAF-------PEELLADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVE----------- 264 (389)
T ss_pred HHHHHHCCCCHHHHHHHHH-------HHHCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCHHHHC-----------
T ss_conf 9999875997278899998-------9755689998565899998111343678999822244988816-----------
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHC
Q ss_conf 11002321024578888875554457531046765459998778899988986498758673079701618999999985
Q gi|254780451|r 407 KKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQA 486 (896)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~ 486 (896)
T Consensus 265 --------------------~~~Id~v~IGSCTngr~eDl~~AA~il------kg~kv~~~vr~~V~P~S~~v~~~a~~~ 318 (389)
T cd01351 265 --------------------GTKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLSRE 318 (389)
T ss_pred --------------------CCCEEEEEECCCCCCCCHHHHHHHHHH------HCCCCCCCEEEEEECCCHHHHHHHHHC
T ss_conf --------------------555589995054689978899999987------357668825899945988999999987
Q ss_pred CCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCC
Q ss_conf 88577775053020553224212777688302210113663587863367666654685433100059789999985161
Q gi|254780451|r 487 GLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN 566 (896)
Q Consensus 487 Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~ 566 (896)
T Consensus 319 G~~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge---~~vsT~NRNF~GRmG~~~~~~yLaSP~~vaasAi~G~ 388 (389)
T cd01351 319 GYYEILVDSGARILPPGCGPCMGNGARLVA-------DGE---VGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGK 388 (389)
T ss_pred CCHHHHHHCCCEECCCCCCCCCCCCCCCCC-------CCC---EEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHCCC
T ss_conf 659899976978888835146060998799-------998---8998479898878998978279899999999986543
Q ss_pred C
Q ss_conf 2
Q gi|254780451|r 567 V 567 (896)
Q Consensus 567 I 567 (896)
T Consensus 389 I 389 (389)
T cd01351 389 I 389 (389)
T ss_pred C
T ss_conf 9