HHsearch alignment for GI: 254780451 and conserved domain: cd01351

>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00  E-value=0  Score=860.86  Aligned_cols=388  Identities=36%  Similarity=0.569  Sum_probs=344.2

Q ss_pred             HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             52200000357999999999999971999999287898139986832110059988999899988754267899998774
Q gi|254780451|r   88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ  167 (896)
Q Consensus        88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~  167 (896)
T Consensus         1 Rvl~hD~Tgp~a~~~~~~~~~--------~~~v~dp~~v~~v~DH~~p~~~---------------~~~~~~~~~lr~f~   57 (389)
T cd01351           1 RVMLQDATGPMAMKAFEILAA--------LGKVADPSQIACVHDHAVQLEK---------------PVNNEGHKFLSFFA   57 (389)
T ss_pred             CEEEEECCCHHHHHHHHHCCC--------CCCCCCCCCEEEEECCCCCCCC---------------HHHHHHHHHHHHHH
T ss_conf             946774653999999997489--------8877898667998688788888---------------66599999999999


Q ss_pred             HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCE
Q ss_conf             214880786088762167789863351131036886179830-1320688764445201232034348999997077514
Q gi|254780451|r  168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPIS  246 (896)
Q Consensus       168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~  246 (896)
T Consensus        58 ~~~-gi~~~~~g~GI~H~v~~E~--------------~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~~~  122 (389)
T cd01351          58 ALQ-GIAFYRPGVGIIHQIMVEN--------------LALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAW  122 (389)
T ss_pred             HHC-CCEEECCCCCCCCEECHHC--------------CCCCCCEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCC
T ss_conf             982-9848898996175360301--------------6899987983786766688332379767899999998149362


Q ss_pred             ECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHH
Q ss_conf             11672899999767786443688999999984102212127999615500178756321200010037203775199899
Q gi|254780451|r  247 MLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT  326 (896)
Q Consensus       247 ~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T  326 (896)
T Consensus       123 ~~vPeti~v~l~G~l~~gv~~KDviL~i~~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~tl~NMa~E~GA~~gi~~~D~~t  202 (389)
T cd01351         123 LKKPEVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTT  202 (389)
T ss_pred             CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf             54897899999833699988999999999997326766279999771122389888654542001047407996586889


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHC
Q ss_conf             99998639998899999987464102367676678863069999803143012265665641367773011668766400
Q gi|254780451|r  327 IDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYY  406 (896)
Q Consensus       327 ~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~  406 (896)
T Consensus       203 ~~yl~~~~~~~~~~~~~~~-------~~~l~~D~dA~Y~~~i~iDls~leP~vA~P~~pdnv~~v~e~~-----------  264 (389)
T cd01351         203 LKWLEATGRPLLKNLWLAF-------PEELLADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVE-----------  264 (389)
T ss_pred             HHHHHHCCCCHHHHHHHHH-------HHHCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCHHHHC-----------
T ss_conf             9999875997278899998-------9755689998565899998111343678999822244988816-----------


Q ss_pred             CCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHC
Q ss_conf             11002321024578888875554457531046765459998778899988986498758673079701618999999985
Q gi|254780451|r  407 KKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQA  486 (896)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~  486 (896)
T Consensus       265 --------------------~~~Id~v~IGSCTngr~eDl~~AA~il------kg~kv~~~vr~~V~P~S~~v~~~a~~~  318 (389)
T cd01351         265 --------------------GTKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLSRE  318 (389)
T ss_pred             --------------------CCCEEEEEECCCCCCCCHHHHHHHHHH------HCCCCCCCEEEEEECCCHHHHHHHHHC
T ss_conf             --------------------555589995054689978899999987------357668825899945988999999987


Q ss_pred             CCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCC
Q ss_conf             88577775053020553224212777688302210113663587863367666654685433100059789999985161
Q gi|254780451|r  487 GLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN  566 (896)
Q Consensus       487 Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~  566 (896)
T Consensus       319 G~~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge---~~vsT~NRNF~GRmG~~~~~~yLaSP~~vaasAi~G~  388 (389)
T cd01351         319 GYYEILVDSGARILPPGCGPCMGNGARLVA-------DGE---VGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGK  388 (389)
T ss_pred             CCHHHHHHCCCEECCCCCCCCCCCCCCCCC-------CCC---EEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHCCC
T ss_conf             659899976978888835146060998799-------998---8998479898878998978279899999999986543


Q ss_pred             C
Q ss_conf             2
Q gi|254780451|r  567 V  567 (896)
Q Consensus       567 I  567 (896)
T Consensus       389 I  389 (389)
T cd01351         389 I  389 (389)
T ss_pred             C
T ss_conf             9