HHsearch alignment for GI: 254780451 and conserved domain: cd01584
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=0 Score=1027.86 Aligned_cols=410 Identities=31% Similarity=0.482 Sum_probs=358.2
Q ss_pred HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52200000357999999999999971999999287898139986832110059988999899988754267899998774
Q gi|254780451|r 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896)
Q Consensus 88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896)
T Consensus 1 Rv~~~D~Tg~~A~~~~~~~-------G~~----~~~~P~~v~~DH~v~~~~~~~~-----~~~~~~~~n~e~~~flk~~~ 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GLP----KVAVPSTIHCDHLIEAQVGGEK-----DLKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CCEEEECCHHHHHHHHHHC-------CCC----CCCCCCEEEECCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf 9015756518999999976-------999----8999873880786200236642-----07888776599999999999
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE-EEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCE
Q ss_conf 2148807860887621677898633511310368861798301-320688764445201232034348999997077514
Q gi|254780451|r 168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPIS 246 (896)
Q Consensus 168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdt-lVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~ 246 (896)
T Consensus 65 ~~~-g~~~~~pg~GI~Hqv~~E--------------~~a~PG~~ivGtDSHT~t~GalG~~a~GvG~~e~~~~m~g~~~~ 129 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLE--------------NYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWE 129 (412)
T ss_pred HHC-CCEEECCCCEEEEEECCC--------------CCCCCCCEEEECCCCCCCCCHHHHEEEECCHHHHHHHHCCCEEE
T ss_conf 980-976889997038247554--------------76579977985135666646466427703899999998198787
Q ss_pred ECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHH
Q ss_conf 11672899999767786443688999999984102212127999615500178756321200010037203775199899
Q gi|254780451|r 247 MLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326 (896)
Q Consensus 247 ~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T 326 (896)
T Consensus 130 ~~vPe~i~v~l~G~l~~gV~akDviL~ii~~l~~~g~~~k~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T 209 (412)
T cd01584 130 LKCPKVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERM 209 (412)
T ss_pred EECCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHH
T ss_conf 12797899999814799977889999999985317743179999785314488877553531664558513343686679
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHC
Q ss_conf 99998639998899999987464102367676678863069999803143012265665641367773011668766400
Q gi|254780451|r 327 IDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYY 406 (896)
Q Consensus 327 ~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~ 406 (896)
T Consensus 210 ~~YL~~~gr~~-~~~~~~~~-~----~~~l~~D~~a~Y~~~ieiDls~ieP~VA~P~~P~~~~pv~~~~~~~~~------ 277 (412)
T cd01584 210 KKYLKATGRAE-IADLADEF-K----DDLLVADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK------ 277 (412)
T ss_pred HHHHHHCCCCH-HHHHHHHH-H----HHCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHH------
T ss_conf 99988659727-89999998-8----633578999845699999801147861599896546616887688986------
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHC
Q ss_conf 11002321024578888875554457531046765459998778899988986498758673079701618999999985
Q gi|254780451|r 407 KKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQA 486 (896)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~ 486 (896)
T Consensus 278 -------~-----~~-----~~~i~~~~IGSCTNgr~~D-l~~AA~ilk~a~~~g~~--~~v~~~v~PgS~~V~~~~~~~ 337 (412)
T cd01584 278 -------N-----GW-----PLDLRVGLIGSCTNSSYED-MGRAASIAKQALAHGLK--CKSIFTITPGSEQIRATIERD 337 (412)
T ss_pred -------C-----CC-----CCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHCCCC--CCCEEEECCCCHHHHHHHHHC
T ss_conf -------2-----88-----6432235761235888457-99999999999856887--661389668988999999988
Q ss_pred CCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC-CEEECCHHHHHHHHHHC
Q ss_conf 88577775053020553224212777688302210113663587863367666654685433-10005978999998516
Q gi|254780451|r 487 GLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVE-ANYLLSPPLVVAYALAG 565 (896)
Q Consensus 487 Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~-~~yLaSP~lVvA~AiaG 565 (896)
T Consensus 338 Gl~~~l~~aG~~v~~~gCg~C~G~~~~~~------~~~g~-~~~~vss~NRNF~GR~g~~~~~~~YLaSP~~vaAsAi~G 410 (412)
T cd01584 338 GLLQTFRDAGGIVLANACGPCIGQWDRKD------IKKGE-KNTIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAG 410 (412)
T ss_pred CCHHHHHHCCCEECCCCCHHCCCCCCCCC------CCCCC-CCEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCC
T ss_conf 73899997798888882433108298767------78777-766995448897778999998558978999999999632
Q ss_pred CC
Q ss_conf 12
Q gi|254780451|r 566 NV 567 (896)
Q Consensus 566 ~I 567 (896)
T Consensus 411 ~I 412 (412)
T cd01584 411 TL 412 (412)
T ss_pred CC
T ss_conf 09