Query gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 896
No_of_seqs 287 out of 1830
Neff 4.8
Searched_HMMs 39220
Date Sun May 29 18:55:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780451.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01341 aconitase_1 aconitat 100.0 0 0 3168.2 55.0 874 19-895 1-895 (896)
2 PRK12881 acnA aconitate hydrat 100.0 0 0 2734.1 79.1 888 4-896 1-894 (896)
3 PRK09277 aconitate hydratase; 100.0 0 0 2711.6 78.8 881 3-896 2-882 (884)
4 PTZ00092 aconitate hydratase; 100.0 0 0 2669.2 75.6 875 4-896 3-886 (887)
5 COG1048 AcnA Aconitase A [Ener 100.0 0 0 2438.2 66.9 860 6-896 1-860 (861)
6 KOG0452 consensus 100.0 0 0 2410.7 44.0 877 4-896 5-892 (892)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 0 0 1678.1 33.9 853 10-894 4-861 (864)
8 PRK07229 aconitate hydratase; 100.0 0 0 1568.7 52.5 645 57-896 2-647 (648)
9 PRK11413 hypothetical protein; 100.0 0 0 1507.5 49.2 708 58-894 35-751 (751)
10 TIGR01340 aconitase_mito aconi 100.0 0 0 1474.7 37.1 717 56-891 18-761 (761)
11 KOG0453 consensus 100.0 0 0 1242.4 41.7 708 57-895 58-775 (778)
12 TIGR01342 acon_putative aconit 100.0 0 0 1252.9 29.7 642 59-894 1-651 (658)
13 cd01586 AcnA_IRP Aconitase A c 100.0 0 0 1228.8 36.8 404 88-567 1-404 (404)
14 pfam00330 Aconitase Aconitase 100.0 0 0 1029.7 34.2 463 59-565 1-464 (464)
15 cd01584 AcnA_Mitochondrial Aco 100.0 0 0 1027.9 34.1 410 88-567 1-412 (412)
16 PRK12466 isopropylmalate isome 100.0 0 0 995.7 31.6 458 57-575 3-464 (472)
17 PRK05478 isopropylmalate isome 100.0 0 0 959.8 30.0 454 57-575 2-462 (466)
18 PRK00402 3-isopropylmalate deh 100.0 0 0 877.8 30.2 410 57-575 2-416 (419)
19 cd01351 Aconitase Aconitase ca 100.0 0 0 860.9 33.2 388 88-567 1-389 (389)
20 cd01585 AcnA_Bact Aconitase ca 100.0 0 0 864.8 29.5 379 87-567 1-380 (380)
21 cd01583 IPMI 3-isopropylmalate 100.0 0 0 864.4 29.7 379 88-567 1-382 (382)
22 TIGR01343 hacA_fam homoaconita 100.0 0 0 847.8 25.8 422 59-575 1-431 (432)
23 TIGR02086 IPMI_arch 3-isopropy 100.0 0 0 828.1 25.3 418 59-576 2-430 (431)
24 cd01582 Homoaconitase Homoacon 100.0 0 0 786.8 25.1 359 89-567 2-363 (363)
25 COG0065 LeuC 3-isopropylmalate 100.0 0 0 777.4 28.7 412 58-575 3-419 (423)
26 cd01581 AcnB Aconitate hydrata 100.0 0 0 748.7 29.2 407 60-567 1-436 (436)
27 TIGR00170 leuC 3-isopropylmala 100.0 0 0 737.2 18.3 452 59-566 4-465 (472)
28 TIGR02083 LEU2 3-isopropylmala 100.0 0 0 684.0 23.3 405 59-567 2-413 (419)
29 cd01580 AcnA_IRP_Swivel Aconit 100.0 0 0 591.9 15.8 171 671-843 1-171 (171)
30 cd01578 AcnA_Mitochon_Swivel M 100.0 0 0 392.7 11.1 149 671-850 1-149 (149)
31 TIGR00139 h_aconitase homoacon 100.0 0 0 372.5 17.1 610 59-825 3-639 (712)
32 PRK09238 bifunctional aconitat 100.0 6E-37 1.5E-41 289.0 26.6 422 56-603 369-821 (841)
33 COG1049 AcnB Aconitase B [Ener 100.0 5.5E-35 1.4E-39 274.7 22.2 415 57-603 372-823 (852)
34 KOG0454 consensus 100.0 6.6E-36 1.7E-40 281.4 11.3 381 344-823 12-401 (502)
35 pfam00694 Aconitase_C Aconitas 100.0 1.7E-34 4.3E-39 271.1 8.0 129 695-825 3-131 (131)
36 cd01579 AcnA_Bact_Swivel Bacte 100.0 1.9E-31 4.8E-36 248.8 7.5 120 671-842 1-120 (121)
37 PRK00439 leuD 3-isopropylmalat 99.9 1.1E-26 2.7E-31 214.1 13.6 155 667-894 3-157 (163)
38 cd00404 Aconitase_swivel Aconi 99.9 4.6E-26 1.2E-30 209.5 6.6 71 770-842 17-87 (88)
39 TIGR02087 LEUD_arch 3-isopropy 99.9 4.4E-25 1.1E-29 202.3 8.3 154 670-894 4-159 (159)
40 KOG0454 consensus 99.9 1.7E-23 4.3E-28 190.7 5.7 421 56-566 65-498 (502)
41 COG0066 LeuD 3-isopropylmalate 99.9 9.7E-22 2.5E-26 177.9 12.9 164 668-895 10-179 (191)
42 cd01577 IPMI_Swivel Aconatase- 99.9 3.3E-22 8.4E-27 181.4 6.0 70 771-841 20-89 (91)
43 TIGR00117 acnB aconitate hydra 99.8 7.6E-19 1.9E-23 156.8 16.5 453 37-607 344-845 (864)
44 cd01674 Homoaconitase_Swivel H 99.8 2E-20 5E-25 168.4 5.7 99 673-824 3-101 (129)
45 PRK01641 leuD isopropylmalate 99.7 9.5E-17 2.4E-21 141.5 10.4 158 667-885 10-172 (201)
46 TIGR02084 leud 3-isopropylmala 99.4 8.5E-14 2.2E-18 119.9 1.5 153 669-892 3-155 (156)
47 TIGR00171 leuD 3-isopropylmala 97.8 6.2E-06 1.6E-10 62.4 1.6 119 673-831 17-135 (194)
48 PRK09238 bifunctional aconitat 96.5 0.018 4.6E-07 37.2 7.5 21 551-571 497-517 (841)
49 pfam01268 FTHFS Formate--tetra 95.4 0.066 1.7E-06 33.0 6.4 40 765-805 369-410 (555)
50 pfam04412 DUF521 Protein of un 95.3 0.094 2.4E-06 31.9 7.0 65 432-504 289-353 (397)
51 PRK13505 formate--tetrahydrofo 94.4 0.14 3.6E-06 30.7 6.1 31 245-275 113-144 (556)
52 cd01355 AcnX Putative Aconitas 94.4 0.082 2.1E-06 32.3 4.8 65 430-504 279-343 (389)
53 pfam06434 Aconitase_2_N Aconit 94.2 0.12 3.1E-06 31.1 5.2 118 758-895 44-175 (204)
54 COG1049 AcnB Aconitase B [Ener 93.4 0.092 2.3E-06 32.0 3.5 21 551-571 499-519 (852)
55 COG1679 Predicted aconitase [G 92.8 0.55 1.4E-05 26.3 6.8 212 194-508 137-357 (403)
56 COG2759 MIS1 Formyltetrahydrof 92.0 0.43 1.1E-05 27.1 5.4 30 802-833 470-500 (554)
57 cd01576 AcnB_Swivel Aconitase 87.3 0.87 2.2E-05 24.8 3.9 71 758-831 41-112 (131)
58 PRK01550 truB tRNA pseudouridi 83.7 2.1 5.4E-05 22.0 4.4 109 508-647 31-141 (307)
59 PRK01528 truB tRNA pseudouridi 81.5 2.5 6.3E-05 21.6 4.1 127 474-647 14-140 (293)
60 PRK00989 truB tRNA pseudouridi 80.0 3.2 8.2E-05 20.7 4.3 122 474-644 20-144 (235)
61 PRK05389 truB tRNA pseudouridi 79.9 3 7.7E-05 20.9 4.1 128 474-648 24-151 (305)
62 COG0311 PDX2 Predicted glutami 79.0 4.2 0.00011 19.9 4.6 72 467-543 38-113 (194)
63 TIGR02441 fa_ox_alpha_mit fatt 78.7 1.8 4.6E-05 22.5 2.7 111 211-355 111-255 (740)
64 TIGR02846 spore_sigmaK RNA pol 77.5 0.92 2.3E-05 24.7 0.9 40 572-611 129-169 (228)
65 PRK02755 truB tRNA pseudouridi 76.4 4.2 0.00011 19.8 4.0 108 508-647 31-139 (291)
66 PRK05033 truB tRNA pseudouridi 76.0 4.4 0.00011 19.7 4.0 127 474-647 23-149 (314)
67 PRK00130 truB tRNA pseudouridi 75.9 5 0.00013 19.3 4.3 127 474-647 13-139 (289)
68 cd00946 FBP_aldolase_IIA Class 74.6 4.7 0.00012 19.5 3.9 10 123-132 87-96 (345)
69 PRK13526 glutamine amidotransf 73.8 4 0.0001 20.0 3.3 67 468-544 40-108 (179)
70 cd00453 FTBP_aldolase_II Fruct 72.8 5.1 0.00013 19.3 3.7 10 123-132 85-94 (340)
71 PRK01851 truB tRNA pseudouridi 71.1 5.8 0.00015 18.8 3.7 124 474-644 28-151 (310)
72 PRK13805 bifunctional acetalde 67.4 8.4 0.00021 17.6 10.3 41 749-794 521-561 (862)
73 TIGR01824 PabB-clade2 para-ami 66.7 2.2 5.5E-05 21.9 0.7 28 662-691 259-286 (373)
74 PRK07709 fructose-bisphosphate 66.5 7.2 0.00018 18.1 3.3 80 43-134 5-88 (285)
75 COG1780 NrdI Protein involved 65.4 3.9 9.9E-05 20.1 1.8 41 509-567 54-97 (141)
76 COG1223 Predicted ATPase (AAA+ 65.4 6.8 0.00017 18.3 3.0 43 137-184 122-166 (368)
77 pfam01174 SNO SNO glutamine am 65.3 8.9 0.00023 17.5 3.6 41 470-510 36-78 (188)
78 PRK02484 truB tRNA pseudouridi 63.6 9.8 0.00025 17.1 3.8 110 507-647 31-142 (293)
79 TIGR01245 trpD anthranilate ph 63.4 5.4 0.00014 19.0 2.2 31 459-499 97-127 (331)
80 TIGR01520 FruBisAldo_II_A fruc 62.5 5.1 0.00013 19.2 2.0 14 203-216 28-42 (365)
81 TIGR01416 Rieske_proteo ubiqui 61.6 9 0.00023 17.4 3.1 21 359-379 33-54 (192)
82 pfam02379 consensus 61.3 11 0.00027 16.9 3.4 33 432-465 2-34 (103)
83 TIGR01694 MTAP methylthioadeno 60.0 5.4 0.00014 19.0 1.7 13 872-884 181-193 (263)
84 TIGR00073 hypB hydrogenase acc 59.9 6.5 0.00017 18.4 2.1 44 142-192 12-55 (225)
85 PRK11809 putA trifunctional tr 59.2 12 0.0003 16.6 3.4 15 37-51 548-562 (1319)
86 COG3970 Fumarylacetoacetate (F 59.0 12 0.0003 16.6 4.0 22 473-494 138-163 (379)
87 TIGR01371 met_syn_B12ind 5-met 58.9 2.2 5.7E-05 21.9 -0.4 27 481-507 318-347 (778)
88 PRK13399 fructose-1,6-bisphosp 58.1 12 0.00031 16.5 3.7 78 42-133 4-85 (347)
89 cd00506 PseudoU_synth_TruB_lik 57.2 13 0.00032 16.4 3.8 109 508-647 29-138 (210)
90 PRK09196 fructose-1,6-bisphosp 57.2 13 0.00032 16.4 3.8 78 42-133 4-85 (347)
91 cd00853 NifX NifX belongs to a 56.5 13 0.00033 16.3 4.5 51 781-831 47-97 (102)
92 PRK07232 malic enzyme; Reviewe 54.9 14 0.00035 16.1 4.2 31 90-120 157-187 (753)
93 KOG2650 consensus 54.8 2.4 6E-05 21.7 -0.8 21 435-455 161-181 (418)
94 pfam07972 Flavodoxin_NdrI NrdI 54.6 6.7 0.00017 18.4 1.5 30 512-542 54-86 (121)
95 cd03868 M14_CPD_I The first ca 54.0 14 0.00036 16.0 3.0 38 536-573 134-171 (372)
96 TIGR02716 C20_methyl_CrtF C-20 53.9 5.1 0.00013 19.2 0.7 54 558-622 192-249 (306)
97 COG0028 IlvB Thiamine pyrophos 53.3 14 0.00037 16.0 6.0 68 752-827 438-509 (550)
98 TIGR03527 selenium_YedF seleni 53.3 7.6 0.00019 18.0 1.6 39 465-513 128-166 (194)
99 cd05569 PTS_IIB_fructose PTS_I 53.0 11 0.00029 16.7 2.4 32 433-465 2-33 (96)
100 PRK00293 dipZ thiol:disulfide 52.9 8 0.0002 17.8 1.6 65 708-777 486-550 (577)
101 TIGR01241 FtsH_fam ATP-depende 52.9 10 0.00026 17.0 2.2 53 136-196 59-113 (505)
102 PRK09197 fructose-bisphosphate 51.9 15 0.00038 15.8 4.6 10 123-132 92-101 (349)
103 cd02573 PseudoU_synth_EcTruB P 51.4 15 0.00039 15.7 3.9 125 474-645 11-136 (277)
104 PRK10427 putative fructose-lik 51.3 15 0.00039 15.7 3.3 33 432-465 5-37 (114)
105 PRK03600 nrdI ribonucleotide r 50.9 9.1 0.00023 17.4 1.6 30 511-540 55-87 (136)
106 PRK03287 truB tRNA pseudouridi 50.7 16 0.0004 15.7 4.0 107 507-644 37-144 (298)
107 cd01749 GATase1_PB Glutamine A 50.6 16 0.0004 15.7 3.5 52 441-511 27-80 (183)
108 TIGR00564 trpE_most anthranila 50.5 12 0.0003 16.6 2.1 19 668-686 418-440 (543)
109 COG0129 IlvD Dihydroxyacid deh 50.3 16 0.0004 15.6 5.9 75 428-511 268-356 (575)
110 pfam01509 TruB_N TruB family p 50.3 16 0.0004 15.6 4.4 104 507-641 8-112 (149)
111 PRK09765 2-O-a-mannosyl-D-glyc 48.9 17 0.00043 15.5 5.5 32 486-517 442-478 (638)
112 COG2006 Uncharacterized conser 47.3 18 0.00045 15.3 4.4 58 437-503 55-112 (293)
113 PRK06365 acetyl-CoA acetyltran 47.3 18 0.00045 15.3 5.7 59 324-387 149-207 (415)
114 PRK11905 bifunctional proline 47.3 18 0.00045 15.3 3.4 77 37-113 463-553 (1215)
115 PRK13507 formate--tetrahydrofo 47.2 11 0.00027 16.9 1.5 28 245-272 122-150 (587)
116 PRK02193 truB tRNA pseudouridi 46.8 18 0.00046 15.2 4.3 110 508-648 29-139 (279)
117 cd02407 PTH2_family Peptidyl-t 46.6 10 0.00026 17.1 1.3 41 481-522 67-108 (115)
118 COG2074 2-phosphoglycerate kin 46.5 4.7 0.00012 19.5 -0.4 78 536-633 80-157 (299)
119 TIGR02155 PA_CoA_ligase phenyl 46.0 18 0.00047 15.2 3.6 15 384-398 40-54 (431)
120 PRK13527 glutamine amidotransf 45.8 18 0.00047 15.1 3.3 42 469-511 45-88 (196)
121 PRK01117 adenylosuccinate synt 45.0 19 0.00048 15.1 2.5 59 504-573 270-332 (431)
122 PRK06801 hypothetical protein; 44.8 8.7 0.00022 17.5 0.8 77 42-133 4-84 (286)
123 PRK13786 adenylosuccinate synt 44.8 19 0.00048 15.1 2.5 59 504-573 268-330 (424)
124 TIGR02095 glgA glycogen/starch 44.4 9.9 0.00025 17.1 1.0 41 153-222 116-161 (517)
125 PRK05222 5-methyltetrahydropte 44.0 6.5 0.00017 18.5 0.0 73 33-123 8-86 (756)
126 KOG0578 consensus 43.8 3.5 8.9E-05 20.4 -1.4 21 704-724 496-516 (550)
127 TIGR00431 TruB tRNA pseudourid 43.0 19 0.00048 15.1 2.3 71 564-651 68-140 (236)
128 cd04252 AAK_NAGK-fArgBP AAK_NA 43.0 12 0.0003 16.6 1.2 133 468-608 29-165 (248)
129 PRK12862 malic enzyme; Reviewe 42.6 21 0.00052 14.8 3.9 29 91-119 164-192 (761)
130 PRK13783 adenylosuccinate synt 42.4 17 0.00043 15.5 1.9 57 504-571 259-319 (404)
131 cd02867 PseudoU_synth_TruB_4 P 42.4 21 0.00053 14.8 4.3 101 508-639 58-159 (312)
132 cd03866 M14_CPM Peptidase M14 42.2 21 0.00053 14.8 3.3 66 488-573 104-169 (376)
133 TIGR02562 cas3_yersinia CRISPR 41.6 2 5E-05 22.3 -3.0 40 754-793 849-890 (1153)
134 cd00852 NifB NifB belongs to a 41.4 21 0.00055 14.7 3.4 48 783-830 53-100 (106)
135 TIGR00763 lon ATP-dependent pr 41.1 12 0.0003 16.6 1.0 142 312-501 513-667 (941)
136 TIGR02177 PorB_KorB 2-oxoacid: 40.9 18 0.00047 15.2 1.9 29 538-568 135-163 (302)
137 TIGR01162 purE phosphoribosyla 40.8 22 0.00056 14.6 2.9 10 172-181 53-63 (159)
138 PRK12928 lipoyl synthase; Prov 40.7 22 0.00056 14.6 3.5 78 460-537 10-114 (290)
139 PRK06048 acetolactate synthase 40.6 22 0.00056 14.6 6.5 24 764-787 455-478 (562)
140 PRK07115 AMP nucleosidase; Pro 40.0 8.7 0.00022 17.5 0.2 17 256-272 93-109 (258)
141 KOG1333 consensus 39.6 15 0.00038 15.8 1.3 15 322-336 8-22 (241)
142 KOG2629 consensus 39.6 22 0.00057 14.6 2.2 22 321-342 20-41 (300)
143 CHL00176 ftsH cell division pr 39.2 23 0.00059 14.5 3.8 55 136-198 177-233 (631)
144 PRK13787 adenylosuccinate synt 39.1 20 0.00052 14.9 1.9 59 504-573 269-331 (423)
145 PRK11404 putative PTS transpor 39.1 23 0.00059 14.4 3.3 32 486-517 289-325 (482)
146 TIGR01422 phosphonatase phosph 38.9 23 0.00059 14.4 3.0 88 352-479 67-157 (199)
147 PRK09195 gatY tagatose-bisphos 38.7 23 0.0006 14.4 3.0 78 42-134 4-85 (284)
148 PRK13525 glutamine amidotransf 37.9 24 0.00061 14.3 4.8 41 470-511 41-83 (191)
149 TIGR00392 ileS isoleucyl-tRNA 37.9 24 0.00061 14.3 3.9 76 622-721 298-388 (938)
150 TIGR02196 GlrX_YruB Glutaredox 37.5 21 0.00053 14.8 1.8 46 692-777 15-64 (79)
151 PRK09968 serine/threonine-spec 36.5 11 0.00027 16.9 0.1 44 668-728 45-89 (218)
152 PRK10954 periplasmic protein d 36.4 25 0.00065 14.1 2.9 18 759-776 159-176 (207)
153 PRK10319 N-acetylmuramoyl-l-al 36.4 25 0.00065 14.1 4.2 49 263-317 76-128 (289)
154 KOG3210 consensus 36.3 25 0.00065 14.1 3.4 42 469-510 58-101 (226)
155 PRK06066 acetyl-CoA acetyltran 36.2 26 0.00065 14.1 5.2 64 325-393 147-210 (375)
156 cd07968 OBF_DNA_ligase_IV The 36.2 10 0.00026 17.1 -0.0 11 668-678 100-110 (140)
157 KOG1434 consensus 35.9 26 0.00066 14.1 7.6 27 749-777 261-287 (335)
158 TIGR00511 aIF-2BII_fam transla 35.9 26 0.00066 14.1 2.3 34 422-465 111-144 (303)
159 cd02430 PTH2 Peptidyl-tRNA hyd 35.3 19 0.00049 15.0 1.3 44 479-523 65-109 (115)
160 KOG3084 consensus 35.2 9.2 0.00024 17.3 -0.3 15 428-442 187-201 (345)
161 TIGR02538 type_IV_pilB type IV 35.2 26 0.00067 14.0 2.8 30 480-509 478-509 (577)
162 cd03867 M14_CPZ Peptidase M14- 34.9 27 0.00068 14.0 3.5 36 492-541 105-141 (395)
163 KOG3512 consensus 34.7 3.5 8.9E-05 20.5 -2.6 104 131-272 140-244 (592)
164 PRK05481 lipoyl synthase; Prov 34.1 27 0.0007 13.9 3.5 76 463-538 5-107 (289)
165 PRK08904 consensus 33.9 19 0.00048 15.1 1.1 32 452-485 26-57 (207)
166 TIGR02471 sucr_syn_bact_C sucr 33.8 18 0.00047 15.2 1.0 60 665-730 144-204 (241)
167 TIGR01818 ntrC nitrogen regula 33.8 28 0.00071 13.9 5.2 74 42-133 8-81 (471)
168 pfam09934 consensus 33.6 20 0.00052 14.8 1.2 15 801-815 73-87 (116)
169 COG0552 FtsY Signal recognitio 33.4 28 0.00072 13.8 3.3 11 453-463 159-169 (340)
170 PRK06552 keto-hydroxyglutarate 33.1 17 0.00043 15.5 0.7 32 452-485 29-60 (209)
171 KOG1389 consensus 33.0 24 0.00061 14.4 1.5 30 436-465 269-302 (435)
172 cd00477 FTHFS Formyltetrahydro 32.4 19 0.00048 15.1 0.9 25 251-275 104-128 (524)
173 PRK09534 btuF corrinoid ABC tr 32.2 29 0.00073 13.8 1.8 20 184-215 108-127 (364)
174 cd02696 MurNAc-LAA N-acetylmur 32.0 30 0.00075 13.7 3.7 43 264-309 20-66 (172)
175 PRK08104 consensus 31.9 22 0.00056 14.6 1.1 33 451-485 30-62 (212)
176 PTZ00129 40S ribosomal protein 31.4 30 0.00077 13.6 5.5 30 435-464 62-91 (150)
177 TIGR00713 hemL glutamate-1-sem 31.1 26 0.00065 14.1 1.4 10 677-686 285-294 (434)
178 PRK04940 hypothetical protein; 31.1 31 0.00078 13.6 3.1 14 786-799 73-86 (179)
179 TIGR00849 gutA PTS system, glu 31.0 31 0.00078 13.5 2.7 41 806-851 78-120 (129)
180 PRK06015 keto-hydroxyglutarate 31.0 22 0.00056 14.6 1.0 32 452-485 31-62 (212)
181 pfam01981 PTH2 Peptidyl-tRNA h 30.8 28 0.00071 13.9 1.5 49 473-522 57-109 (116)
182 TIGR01702 CO_DH_cata carbon-mo 30.7 31 0.00079 13.5 3.9 136 100-266 112-264 (647)
183 PRK11439 pphA serine/threonine 30.6 23 0.00058 14.5 1.0 43 668-727 47-90 (218)
184 COG1618 Predicted nucleotide k 30.4 31 0.0008 13.5 4.5 33 249-283 2-34 (179)
185 pfam04775 Bile_Hydr_Trans Acyl 30.3 31 0.0008 13.5 4.0 17 549-575 36-52 (125)
186 KOG0806 consensus 30.2 32 0.0008 13.5 2.4 36 754-789 174-212 (298)
187 COG0147 TrpE Anthranilate/para 30.2 32 0.0008 13.5 4.1 17 309-325 99-115 (462)
188 TIGR00829 FRU PTS system, Fru 29.8 32 0.00082 13.4 2.8 34 434-470 2-35 (85)
189 TIGR02924 ICDH_alpha isocitrat 29.8 19 0.00049 15.0 0.6 21 662-682 432-453 (481)
190 COG0831 UreA Urea amidohydrola 29.7 32 0.00082 13.4 2.0 53 446-502 12-66 (100)
191 pfam05221 AdoHcyase S-adenosyl 29.7 32 0.00082 13.4 3.9 21 257-277 186-206 (430)
192 PRK07114 keto-hydroxyglutarate 29.5 24 0.00062 14.3 1.0 32 452-485 32-63 (223)
193 PRK06091 membrane protein FdrA 29.4 33 0.00083 13.4 3.1 54 749-805 427-483 (555)
194 PRK06857 consensus 29.4 18 0.00046 15.2 0.4 32 452-485 28-59 (209)
195 pfam00154 RecA recA bacterial 29.1 33 0.00084 13.3 4.3 54 261-322 33-88 (322)
196 COG2204 AtoC Response regulato 29.0 33 0.00084 13.3 3.8 73 42-133 14-86 (464)
197 smart00788 Adenylsucc_synt Ade 28.9 33 0.00084 13.3 3.2 23 550-572 306-328 (421)
198 pfam00851 Peptidase_C6 Helper 28.9 33 0.00085 13.3 3.3 22 665-686 410-431 (453)
199 TIGR02134 transald_staph trans 28.3 24 0.00061 14.3 0.8 103 441-568 31-149 (237)
200 PRK08782 consensus 28.3 18 0.00046 15.2 0.2 34 450-485 31-64 (219)
201 pfam12000 DUF3495 Domain of un 28.2 17 0.00044 15.4 0.1 20 576-595 71-90 (172)
202 TIGR01893 aa-his-dipept aminoa 28.1 28 0.00071 13.8 1.1 164 178-378 109-313 (506)
203 cd05017 SIS_PGI_PMI_1 The memb 28.0 34 0.00088 13.2 1.7 12 259-270 35-46 (119)
204 cd03026 AhpF_NTD_C TRX-GRX-lik 27.9 22 0.00057 14.6 0.6 28 756-783 54-81 (89)
205 pfam07159 DUF1394 Protein of u 27.6 24 0.00062 14.3 0.8 22 672-693 242-263 (304)
206 cd00562 NifX_NifB This CD repr 27.4 35 0.0009 13.1 3.8 47 783-829 49-95 (102)
207 PRK08392 hypothetical protein; 27.2 29 0.00074 13.7 1.1 77 444-534 16-95 (215)
208 COG0083 ThrB Homoserine kinase 27.1 30 0.00076 13.6 1.2 59 439-513 192-254 (299)
209 PRK04322 peptidyl-tRNA hydrola 27.0 33 0.00084 13.3 1.4 41 481-522 68-109 (116)
210 pfam05616 Neisseria_TspB Neiss 27.0 36 0.00091 13.1 1.9 14 772-785 412-425 (502)
211 pfam06263 consensus 27.0 36 0.00091 13.1 3.1 48 450-509 128-178 (514)
212 PRK05476 S-adenosyl-L-homocyst 26.8 36 0.00091 13.0 3.9 20 257-276 184-203 (427)
213 TIGR02055 APS_reductase adenyl 26.7 36 0.00092 13.0 1.6 41 462-508 133-174 (200)
214 TIGR02925 cis_trans_EpsD pepti 26.5 31 0.00079 13.5 1.2 21 591-613 118-138 (236)
215 PRK05718 keto-hydroxyglutarate 26.3 29 0.00075 13.7 1.0 32 452-485 31-62 (212)
216 TIGR01382 PfpI intracellular p 26.0 22 0.00056 14.6 0.3 45 432-503 112-156 (189)
217 PRK10431 N-acetylmuramoyl-l-al 25.9 37 0.00095 12.9 4.2 50 259-308 206-258 (444)
218 PHA02239 putative protein phos 25.9 32 0.0008 13.5 1.1 11 474-484 44-54 (235)
219 cd00401 AdoHcyase S-adenosyl-L 25.8 37 0.00095 12.9 4.1 25 518-544 251-275 (413)
220 TIGR01122 ilvE_I branched-chai 25.7 34 0.00086 13.2 1.2 79 460-555 81-162 (302)
221 TIGR02159 PA_CoA_Oxy4 phenylac 25.7 31 0.0008 13.5 1.1 103 79-226 26-130 (152)
222 TIGR03649 ergot_EASG ergot alk 25.5 38 0.00096 12.9 8.7 76 263-342 167-243 (285)
223 PRK11921 metallo-beta-lactamas 25.3 38 0.00097 12.9 2.0 11 592-602 374-384 (395)
224 TIGR00777 ahpD alkylhydroperox 25.3 21 0.00054 14.7 0.1 21 362-382 10-30 (178)
225 pfam09818 ABC_ATPase Predicted 25.3 38 0.00097 12.9 3.7 23 753-775 372-395 (447)
226 TIGR01132 pgm phosphoglucomuta 25.2 10 0.00025 17.1 -1.6 13 620-632 450-462 (553)
227 TIGR02733 desat_CrtD C-3',4' d 25.1 36 0.00091 13.1 1.3 27 116-143 79-105 (499)
228 PRK13788 adenylosuccinate synt 25.0 39 0.00098 12.8 2.5 17 503-520 257-273 (404)
229 COG0210 UvrD Superfamily I DNA 24.8 39 0.00099 12.8 2.2 47 82-136 43-89 (655)
230 PRK08610 fructose-bisphosphate 24.6 39 0.001 12.8 3.6 81 42-134 4-88 (286)
231 PRK07455 keto-hydroxyglutarate 24.6 25 0.00063 14.2 0.3 31 452-484 29-59 (210)
232 pfam01081 Aldolase KDPG and KH 24.5 24 0.00061 14.3 0.3 32 452-485 24-55 (196)
233 PRK09354 recA recombinase A; P 24.4 40 0.001 12.7 3.3 55 260-321 40-95 (350)
234 pfam10863 DUF2702 Protein of u 24.3 25 0.00063 14.2 0.3 17 169-185 55-71 (142)
235 pfam07597 DUF1560 Protein of u 24.2 23 0.0006 14.4 0.2 38 507-554 1-38 (51)
236 PRK08674 bifunctional phosphog 24.0 40 0.001 12.7 1.3 64 235-322 50-113 (328)
237 pfam02861 Clp_N Clp amino term 24.0 40 0.001 12.7 1.3 34 674-707 11-44 (53)
238 TIGR00936 ahcY adenosylhomocys 23.8 40 0.001 12.7 3.5 71 708-821 189-261 (422)
239 COG1445 FrwB Phosphotransferas 23.8 41 0.001 12.7 3.3 33 432-465 4-36 (122)
240 KOG0174 consensus 23.7 36 0.00091 13.1 1.0 15 206-220 26-41 (224)
241 TIGR00784 citMHS citrate trans 23.2 39 0.001 12.7 1.2 15 551-565 388-402 (439)
242 pfam00777 Glyco_transf_29 Glyc 23.1 42 0.0011 12.6 2.9 55 503-558 56-113 (268)
243 PRK12361 hypothetical protein; 23.0 42 0.0011 12.6 4.6 15 448-462 283-297 (546)
244 PRK07315 fructose-bisphosphate 22.9 42 0.0011 12.5 3.3 13 121-133 75-87 (293)
245 KOG0820 consensus 22.9 42 0.0011 12.5 2.2 33 291-331 65-97 (315)
246 pfam06163 DUF977 Bacterial pro 22.6 34 0.00087 13.2 0.7 16 316-331 61-76 (127)
247 COG4811 Predicted membrane pro 22.5 43 0.0011 12.5 1.7 26 799-824 103-128 (152)
248 PRK02090 phosphoadenosine phos 22.4 43 0.0011 12.5 1.9 34 473-508 178-212 (243)
249 PRK07084 fructose-bisphosphate 22.3 43 0.0011 12.5 4.8 82 42-133 10-95 (321)
250 PRK10733 hflB ATP-dependent me 22.3 43 0.0011 12.5 4.1 55 136-198 152-208 (644)
251 KOG2012 consensus 22.2 40 0.001 12.7 1.1 88 509-612 457-547 (1013)
252 pfam01520 Amidase_3 N-acetylmu 22.2 43 0.0011 12.4 4.0 43 263-308 18-64 (172)
253 TIGR00223 panD aspartate 1-dec 22.1 34 0.00087 13.2 0.7 38 433-476 21-63 (127)
254 PRK12857 putative aldolase; Re 22.1 42 0.0011 12.5 1.2 78 42-134 4-85 (284)
255 COG0033 Pgm Phosphoglucomutase 22.0 44 0.0011 12.4 1.7 40 536-575 235-281 (524)
256 TIGR01754 flav_RNR ribonucleot 22.0 44 0.0011 12.4 3.4 46 326-387 4-51 (145)
257 pfam04397 LytTR LytTr DNA-bind 21.9 12 0.0003 16.6 -1.7 16 802-817 46-61 (98)
258 TIGR01927 menC_gamma/gm+ o-suc 21.9 32 0.00081 13.4 0.5 22 783-805 275-296 (336)
259 PRK12861 malic enzyme; Reviewe 21.8 44 0.0011 12.4 4.5 31 90-120 158-188 (762)
260 COG3961 Pyruvate decarboxylase 21.8 18 0.00046 15.2 -0.8 74 171-275 41-116 (557)
261 TIGR02353 NRPS_term_dom non-ri 21.7 44 0.0011 12.4 2.4 53 786-863 612-664 (719)
262 KOG2692 consensus 21.6 44 0.0011 12.4 2.2 57 503-560 153-212 (376)
263 KOG0024 consensus 21.5 31 0.00079 13.5 0.4 60 212-321 42-101 (354)
264 COG3199 Predicted inorganic po 21.4 45 0.0011 12.3 3.8 64 264-329 83-149 (355)
265 CHL00202 argB acetylglutamate 21.4 45 0.0011 12.3 2.9 135 468-608 56-196 (284)
266 TIGR01517 ATPase-IIB_Ca calciu 21.1 45 0.0012 12.3 3.0 27 156-182 142-168 (885)
267 PRK10712 fructose-specific PTS 21.1 45 0.0012 12.3 5.7 32 486-517 377-413 (563)
268 cd00390 Urease_gamma Urease ga 21.0 46 0.0012 12.3 1.8 52 447-502 10-63 (96)
269 cd04939 PA2301 PA2301 is an un 20.9 46 0.0012 12.3 1.8 38 503-543 88-125 (139)
270 TIGR01993 Pyr-5-nucltdase pyri 20.8 46 0.0012 12.2 3.7 27 469-495 107-134 (205)
271 TIGR03186 AKGDH_not_PDH alpha- 20.8 46 0.0012 12.2 2.3 20 768-787 820-839 (889)
272 COG0320 LipA Lipoate synthase 20.8 46 0.0012 12.2 3.3 76 463-538 23-125 (306)
273 KOG3865 consensus 20.8 46 0.0012 12.2 6.0 23 244-266 112-134 (402)
274 PRK13784 adenylosuccinate synt 20.7 46 0.0012 12.2 2.2 16 504-520 269-284 (428)
275 pfam08127 Propeptide_C1 Peptid 20.7 46 0.0012 12.2 1.6 20 774-797 18-37 (41)
276 PRK04346 tryptophan synthase s 20.7 46 0.0012 12.2 1.2 11 210-220 83-93 (392)
277 PRK07329 hypothetical protein; 20.6 37 0.00095 12.9 0.6 10 366-375 179-188 (246)
278 KOG0695 consensus 20.4 21 0.00053 14.8 -0.7 10 68-77 57-66 (593)
279 pfam02316 Mu_DNA_bind Mu DNA-b 20.3 47 0.0012 12.2 1.2 26 280-308 30-56 (136)
280 PRK13012 2-oxoacid dehydrogena 20.1 48 0.0012 12.1 2.4 98 680-787 738-849 (898)
281 pfam11920 DUF3438 Protein of u 20.0 7.5 0.00019 18.0 -3.0 96 81-189 75-180 (285)
No 1
>TIGR01341 aconitase_1 aconitate hydratase 1; InterPro: IPR006249 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents bacterial aconitase A (AcnA), eukaryotic cytosolic aconitase (cAcn/IRP1), iron regulatory protein 2 (IRP2), and a few mitochondrial aconitases (certain mAcn proteins, but not the majority of these enzymes). More information about these proteins can be found at Protein of the Month: Aconitase .; GO: 0051539 4 iron 4 sulfur cluster binding, 0008152 metabolic process.
Probab=100.00 E-value=0 Score=3168.18 Aligned_cols=874 Identities=60% Similarity=1.005 Sum_probs=850.2
Q ss_pred EEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHH
Q ss_conf 37998766878651577854457119999998874048665799999998612355457776636453252200000357
Q gi|254780451|r 19 IDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVP 98 (896)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~p 98 (896)
++|+||+|++++++|..++++|||||||||||++||+||..|+++||++|++|..+ ...+.||+|+|+||+||||||||
T Consensus 1 k~~~YYsL~~l~~~G~~ki~~LPySiriLLEs~~Rn~DG~~i~~eD~e~i~~W~~~-~~~d~Ei~FkP~RV~mQDFTGVP 79 (896)
T TIGR01341 1 KTYYYYSLKALEESGGGKISKLPYSIRILLESVLRNLDGFSIKEEDVEAILKWKKE-ELKDVEIAFKPARVVMQDFTGVP 79 (896)
T ss_pred CCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-CCCCCCCCCCCCEEEEECCCCCC
T ss_conf 97355770899846886500041479999999987638842067899888443113-54661467564136752437872
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 99999999999997199999928789813998683211005998899989998875426789999877421488078608
Q gi|254780451|r 99 AVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPP 178 (896)
Q Consensus 99 a~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pP 178 (896)
||||||||||+|+.+|+||++|||+||||||||||||||+||+.+||+.||++|||||.|||+||||||+||+||+||||
T Consensus 80 AVVDLA~mR~am~~LGgDp~kINP~vPVDLVIDHSVQVD~~G~~~Ale~N~~LEFeRN~ERY~FLKWa~~AF~N~~vVPP 159 (896)
T TIGR01341 80 AVVDLAAMRDAMKNLGGDPEKINPLVPVDLVIDHSVQVDYYGTEEALEKNMELEFERNLERYKFLKWAKKAFKNFKVVPP 159 (896)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCC
T ss_conf 78888999999998278812048876523377560675456886799997787521044677766778875314674159
Q ss_pred CCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEE
Q ss_conf 87621677898633511310368861798301320688764445201232034348999997077514116728999997
Q gi|254780451|r 179 GTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVT 258 (896)
Q Consensus 179 G~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~ 258 (896)
|+||||||||||||+|||..+.+|+.+|||||||||||||||+||||+||||||||||||+|||||++|.+||||||+|+
T Consensus 160 GtGI~HQVNLEYLa~VV~~~~~dG~~~aYPD~lVGTDSHTTMInGlGVLGWGVGGIEAEA~mLGqP~~~~~PeViG~kL~ 239 (896)
T TIGR01341 160 GTGIVHQVNLEYLAKVVFEAEKDGELVAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPVSMVVPEVIGVKLT 239 (896)
T ss_pred CCCCEEECCHHHHHHHHHHHHCCCCEEECCCEEEECCCCHHHHCCCEEECCCCCHHHHHHHHCCCCEEEECCCEEEEEEE
T ss_conf 88516401357889999875228846643652684686310024505612365468888886188628745866777877
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHH
Q ss_conf 67786443688999999984102212127999615500178756321200010037203775199899999986399988
Q gi|254780451|r 259 GSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNS 338 (896)
Q Consensus 259 G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~ 338 (896)
|||++|||||||||+|||+||++|||||||||||||++.||++||||||||||||||||||||+|++|++|||+|||+++
T Consensus 240 GKl~~G~TATDlVL~VTqmLRK~gVVgKFVEFfGpg~~~LslaDRATIANM~PEYGATcgfFPiD~~TL~YLrLTGR~~d 319 (896)
T TIGR01341 240 GKLREGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLKELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDED 319 (896)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 42586886211352310122113764423574067620077633010322782045542689734888877541584874
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC--CCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHH--HHHHCCCHH----
Q ss_conf 9999998746410236767667--88630699998031430122656656413677730116687--664001100----
Q gi|254780451|r 339 RVDLVEAYTKVQGMWREDIDYE--KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTE--MNEYYKKSH---- 410 (896)
Q Consensus 339 ~v~lve~Y~ka~~l~~~~~~d~--~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~--~~~~~~~~~---- 410 (896)
+|++||+|+|+|+||+++.+++ .+.|++++|||||+|||+||||+||||||+|++|+.+|..+ |........
T Consensus 320 ~v~~vekY~~aqglF~~P~s~~eskp~yt~~~ElDLs~vEp~~aGPKrPqdR~~L~~v~~~F~~~neL~~~~G~~~f~l~ 399 (896)
T TIGR01341 320 HVDLVEKYLRAQGLFYDPDSEEESKPKYTDVVELDLSDVEPSVAGPKRPQDRVPLKEVKASFKSSNELESNAGDKGFALR 399 (896)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 13886898996656268888745771020188863123550237867853257868878988755210146765442114
Q ss_pred -----HHHHH----CCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHH
Q ss_conf -----23210----245788888755544575310467654599987788999889864987586730797016189999
Q gi|254780451|r 411 -----TLDEK----YPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYE 481 (896)
Q Consensus 411 -----~~~~~----~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~ 481 (896)
+.... +..+|....|.||+|||||||||||||||+||+||||||||||+.||||+||||||+||||++|++
T Consensus 400 aeeenK~~~~k~~nfnfnG~~~~l~dGavVIAAITSCTNTSNP~VmlgAGLlAKKAVelGLkV~P~vKTSLAPGS~VVt~ 479 (896)
T TIGR01341 400 AEEENKEPKEKKLNFNFNGKELQLKDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTD 479 (896)
T ss_pred CHHHCCCHHHHEEEECCCCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH
T ss_conf 42212431252022001784015347888997202687775267999999888888515883188146740878635898
Q ss_pred HHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHH
Q ss_conf 99985885777750530205532242127776883022101136635878633676666546854331000597899999
Q gi|254780451|r 482 YLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAY 561 (896)
Q Consensus 482 ~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~ 561 (896)
||.++||++||++|||+++||||||||||||||++.|+++|.+|+|.++|||||||||||||||.+|+||||||||||||
T Consensus 480 YL~~sGLlpYL~~LGF~lVGYGCTTCIGNSGPL~~~~e~AI~~NdL~~~aVLSGNRNFEGRIHPLvK~NyLASPPLVVAY 559 (896)
T TIGR01341 480 YLAESGLLPYLEELGFNLVGYGCTTCIGNSGPLPEEVEEAIVKNDLVVVAVLSGNRNFEGRIHPLVKANYLASPPLVVAY 559 (896)
T ss_pred HHHHCCCCHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEEECCCCCCCEECCCCCCCCCCCCHHHHHH
T ss_conf 97430640368861972761443202068888878899896628828999831554633201600123534572579898
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 85161222310023554888863200156888578888876415832100012233478712201557877620567433
Q gi|254780451|r 562 ALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKS 641 (896)
Q Consensus 562 AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~S 641 (896)
||||+|++||.+||||+|++|++|||||||||.+||++++.+.|.|+||++.|..|++||++|+.|++|.|++|.||++|
T Consensus 560 ALAG~~~Inl~~~PIG~d~~Gk~VYl~DIWPS~~EI~~~V~~~V~pemF~k~Y~~~~~gN~~Wn~i~~~~~~~Y~WD~kS 639 (896)
T TIGR01341 560 ALAGNVDINLETDPIGTDKDGKPVYLKDIWPSNKEIAEVVNKAVKPEMFKKEYEEVTEGNERWNKIEVTSSDLYEWDEKS 639 (896)
T ss_pred HHCCCEEECCCCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCC
T ss_conf 51481355457787106877977886244775889999998512645678865222022033101368875554668875
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHH
Q ss_conf 342378876776545543324--358558999658857233164565554473788898749886563145653023577
Q gi|254780451|r 642 TYVRNPPYFETISKHIPEIVD--ICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEV 719 (896)
Q Consensus 642 tyI~~pPff~~~~~~~~~~~~--i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhev 719 (896)
||||+||||+.|..+|++..| |+|||||++||||||||||||||+|.+|||||+||+++||.|+||||||||||||||
T Consensus 640 TYIr~PPfF~e~~~~P~~~~dfrikgAr~Ll~lGDSiTTDHISPAGsI~kDSPAgkYL~e~GV~r~DFNSYGSRRGNHEV 719 (896)
T TIGR01341 640 TYIRNPPFFEEMKLEPEEVEDFRIKGARILLLLGDSITTDHISPAGSIKKDSPAGKYLQERGVSRRDFNSYGSRRGNHEV 719 (896)
T ss_pred CCCCCCCCCCCCEECCCCCCCEEEECCEEEEECCCCEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEE
T ss_conf 31268484467520588889714405488874088053165688887368875788886368886515767876687424
Q ss_pred HHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEE
Q ss_conf 76652036012232125777657722453899787379999989981998899946777867307999886676170899
Q gi|254780451|r 720 MMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSV 799 (896)
Q Consensus 720 M~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAV 799 (896)
|||||||||||||+|+ +|+|||||+|+|+++++|||||||+||++++|+||||||+||+|||||||||||+|||||||
T Consensus 720 MmRGTFANiRIkN~~v--~G~EGG~T~h~P~~~~~SvYDAAM~YK~eg~plvv~AGKeYGsGSSRDWAAKGt~LLGvkaV 797 (896)
T TIGR01341 720 MMRGTFANIRIKNLMV--KGKEGGYTVHLPDGEVLSVYDAAMKYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAV 797 (896)
T ss_pred CCCCCCCCHHEEEEEC--CCEECCEEEEECCCCCEEEHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCEEEE
T ss_conf 0467522600052240--66037856664188434500444341017888799942404898860466308854514799
Q ss_pred EECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCE--EEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHH
Q ss_conf 97647898885053552322331789898881989743--8997263225899738999981899679999998738999
Q gi|254780451|r 800 IAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDE--IINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLD 877 (896)
Q Consensus 800 IA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E--~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~ 877 (896)
||||||||||||||+||||||||++++++++|+|+|+| +++|.++.+|+|++.++|+.++.||+..+|++++|+||+.
T Consensus 798 IAeSFERIHRSNLVgMGviPl~f~~g~~a~TLGl~G~E~~~id~~~i~~~~Pg~~vtv~~~~~~G~~~t~~~~~R~Dt~v 877 (896)
T TIGR01341 798 IAESFERIHRSNLVGMGVIPLEFKQGEDAETLGLTGEELITIDVDDIKEIKPGKEVTVTLTNKDGEKETFECVLRIDTEV 877 (896)
T ss_pred EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEECCHH
T ss_conf 83253303323324304122105888871125787536999865886634889702589983689788997888725468
Q ss_pred HHHHHHCCCHHHHHHHHH
Q ss_conf 999999098368988872
Q gi|254780451|r 878 EINHLKNGGILQAVLRQL 895 (896)
Q Consensus 878 E~~~~~~GGiL~yvlr~l 895 (896)
|+.||+||||||||||++
T Consensus 878 El~Y~~~GGILqYVlr~~ 895 (896)
T TIGR01341 878 ELDYYKHGGILQYVLRKL 895 (896)
T ss_pred HHHHHHCCCCHHHHHHHH
T ss_conf 988863588315788740
No 2
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=0 Score=2734.06 Aligned_cols=888 Identities=59% Similarity=0.979 Sum_probs=862.7
Q ss_pred CCCCCCCCCEEEECCEEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 77770012144328837998766878651577854457119999998874048665799999998612355457776636
Q gi|254780451|r 4 SLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEVS 83 (896)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei~ 83 (896)
+.|||+++++|+++|++|+||+|+++++.+..++++|||||||||||+||||||..+++++++++++|.++ .....||+
T Consensus 1 ~~~~~~~~~~l~~~~~~~~y~~l~~~~~~~~~~~~~lP~s~rillEn~lR~~d~~~v~~~~v~~~~~w~~~-~~~~~ei~ 79 (896)
T PRK12881 1 AHNLLKTLKEFDVGSKTGKFYSLPALGAELGGDIERLPVSLRVLLENLLRNEDGKKVTEAHLRALANWLPE-AKRDDEIP 79 (896)
T ss_pred CCCCCCCCCEEEECCEEEEEEEHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC-CCCCCEEC
T ss_conf 99751364158989977899618997753389854388129999999987179876889999999852413-89874244
Q ss_pred CCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45325220000035799999999999997199999928789813998683211005998899989998875426789999
Q gi|254780451|r 84 YRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFL 163 (896)
Q Consensus 84 f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Fl 163 (896)
|+|+||+|||||||||+|||||||||++++|+||++|||++|||||||||||||+||+++|+++|+++||+||+|||+||
T Consensus 80 f~p~Rv~lqDftgvPa~vDlAamRda~~~~g~dp~~inP~~pvdlviDHSv~vd~~g~~~a~~~N~~~E~~RN~ERy~fl 159 (896)
T PRK12881 80 FVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFL 159 (896)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34335874337795187639989999998099977749999862586261788516885688876567765307888889
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCC
Q ss_conf 87742148807860887621677898633511310368861798301320688764445201232034348999997077
Q gi|254780451|r 164 KWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC 243 (896)
Q Consensus 164 kwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGq 243 (896)
||||++|+||||||||+||||||||||||+|||.++.++.+++||||||||||||||+||||||||||||+|||++|+||
T Consensus 160 kW~q~af~n~rvvPPg~GI~HQvNlEyla~vv~~~~~~~~~~~~pDtlvGTDSHT~minGLGvlgwGVGGieAeaaMlGq 239 (896)
T PRK12881 160 KWGMQAFDNFRVVPPGTGIVHQVNLEYLARVVHTKEEDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQ 239 (896)
T ss_pred HHHHHHHCCCEEECCCCCEEEEEEHHHHHHHEEEEECCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCC
T ss_conf 99998742745428998523433177641113752027884570564115677777678624788634649999987499
Q ss_pred CCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCC
Q ss_conf 51411672899999767786443688999999984102212127999615500178756321200010037203775199
Q gi|254780451|r 244 PISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVD 323 (896)
Q Consensus 244 p~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~D 323 (896)
|++|++||||||+|+|+|++|||||||||+|+++||++|||||||||||||+++||++||||||||+|||||||||||+|
T Consensus 240 P~~m~~P~VvGv~LtG~L~~gvTatDlvL~it~~Lr~~GvvGkfVEffG~G~~~LS~~dRATIaNM~pEyGAT~g~FP~D 319 (896)
T PRK12881 240 PVSMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFYGEGTASLSLGDRATIANMAPEYGATMGFFPVD 319 (896)
T ss_pred CEECCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEHHHCCCCCCCEEEECCCC
T ss_conf 55523775799998602699975889999999998654875279999773322456433000233172328724578988
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHH
Q ss_conf 89999998639998899999987464102367676678863069999803143012265665641367773011668766
Q gi|254780451|r 324 RGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMN 403 (896)
Q Consensus 324 e~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~ 403 (896)
++|++||++|||++++++++|+|+|+|+||+++ ++++.|++++|||||+|||+||||+||||+|++++++..|...+.
T Consensus 320 ~~Tl~YLr~TgR~~~~i~lve~y~k~q~L~~d~--~~~~~Y~~vieiDLs~veP~iAGP~rPqdrv~l~~~~~~f~~~~~ 397 (896)
T PRK12881 320 EKTLDYLRLTGRTEAEIALVEAYFKAQGLWGDP--KAEPDYTKTLTLDLSTVAPSLAGPKRPQDRIALGNVKSAFTDLFS 397 (896)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 799999998099889999999998755855588--988650327998812451023699980000244566788999864
Q ss_pred HHCCCHH-----HHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHH
Q ss_conf 4001100-----23210245788888755544575310467654599987788999889864987586730797016189
Q gi|254780451|r 404 EYYKKSH-----TLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQV 478 (896)
Q Consensus 404 ~~~~~~~-----~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~ 478 (896)
....+.. .........+..+.|+||+|+|||||||||||||++|+|||||||||+++|||++|||||+++|||+|
T Consensus 398 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~VvIAaItSCTNTSnp~vm~aAgLlAkkAv~~GLkvkp~VKtslaPGSrv 477 (896)
T PRK12881 398 KPVAENGFAKAAEDLPAQYTTGNGVDLKDGAVLIAAITSCTNTSNPSVLLAAGLLAKKAVEKGLTRKPWVKTSLAPGSKV 477 (896)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHH
T ss_conf 22101466655343332014665555577878999974335778688999999999999975995488731316887799
Q ss_pred HHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHH
Q ss_conf 99999985885777750530205532242127776883022101136635878633676666546854331000597899
Q gi|254780451|r 479 SYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLV 558 (896)
Q Consensus 479 V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lV 558 (896)
|++||+++||+++|+++||++++|||+|||||||||+++++++|.++++++++|+|||||||||+||.+++|||||||||
T Consensus 478 V~~yL~~~Gll~~L~~lGf~vvgyGC~tCIGnsGpL~~~i~~ai~~~~l~~~sVlSgNRNFeGRi~p~~~anyLaSP~LV 557 (896)
T PRK12881 478 VTEYLEKAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEEAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPPLV 557 (896)
T ss_pred HHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCHHH
T ss_conf 99999986888889976968954555324589888880555431127823877850577877567975100674180999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 99985161222310023554888863200156888578888876415832100012233478712201557877620567
Q gi|254780451|r 559 VAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWD 638 (896)
Q Consensus 559 vA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~ 638 (896)
+||||||+|+||+.+||||+|++|++|||+||||+++||++++.+.++|++|++.|..++++++.|+.|+++++++|+||
T Consensus 558 vAyAlaG~i~~d~~~dPlg~d~dG~~V~L~DiwPs~~EI~~~~~~~v~p~~f~~~y~~v~~g~~~w~~l~~~~~~~y~Wd 637 (896)
T PRK12881 558 VAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSEEIDALLAFAVDPEMFRKNYAEVFKGGELWQAIEGPQGQLYDWD 637 (896)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997297445655675443889984202355887567888875268977843301344578655542346887643458
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHH
Q ss_conf 43334237887677654554332435855899965885723316456555447378889874988656314565302357
Q gi|254780451|r 639 EKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHE 718 (896)
Q Consensus 639 ~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhe 718 (896)
++|||||+||||++++.++++..+|++||||++||||||||||||||+|+++||||+||+++||.++|||||||||||||
T Consensus 638 ~~StyI~~PPff~~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~SpAG~yL~~~gv~~~dfNsYgsRRgNhe 717 (896)
T PRK12881 638 PKSTYIRRPPFFDFSMGPAASIATVKGARPLAVLGDSVTTDHISPAGAIKADSPAGKYLKENGVQKADFNSYGSRRGNHE 717 (896)
T ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCHH
T ss_conf 88775407998665666777765643655999948976625507666667778226779871998444122343045546
Q ss_pred HHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEE
Q ss_conf 77665203601223212577765772245389978737999998998199889994677786730799988667617089
Q gi|254780451|r 719 VMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRS 798 (896)
Q Consensus 719 vM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkA 798 (896)
|||||||+||||+|+|+ +++|||||+|+|+|++|+||||||+|+++|+|||||||+|||+|||||||||||+||||||
T Consensus 718 vM~RGtFaNirl~N~l~--~~~eGg~t~~~p~ge~~~i~daA~~Y~~~g~plVVvAG~~YG~GSSRDwAAkgp~lLGVkA 795 (896)
T PRK12881 718 VMMRGTFANVRIKNLMA--PGKEGGLTLHQPSGEQLSIYDAAMRYQAEGTPLVVFAGEEYGTGSSRDWAAKGTRLLGVKA 795 (896)
T ss_pred HHHHHCCCCHHHHHHCC--CCCCCCEEEECCCCCEECHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCEEE
T ss_conf 65430013302331015--6666750465588855009999999998099769995475677408999985476548799
Q ss_pred EEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHH-HCCCCCEEEEEEEECCCCEEEEEEEEEECCHH
Q ss_conf 99764789888505355232233178989888198974389972632-25899738999981899679999998738999
Q gi|254780451|r 799 VIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLK-TISPRQESTLEIHYSDGTFKCVPIICCIDTLD 877 (896)
Q Consensus 799 VIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~-~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~ 877 (896)
||||||||||||||||||||||||++|++|++|+|+|+|+|+|.+++ +++|+++++|+++++||++++|++++|+||+.
T Consensus 796 VIAeSFeRIHrsNLvgmGVLPL~F~~g~~~~sL~L~G~E~~~I~gl~~~l~p~~~v~v~~~~~dG~~~~f~~~~ridT~~ 875 (896)
T PRK12881 796 VIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGSETFDIEGLGDDLKPRQTVTLVIHRADGSTQRVPVLCRIDTPI 875 (896)
T ss_pred EEEEEHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCHH
T ss_conf 99960788998751425635546569998766089977349884764567999868999994899689999999649999
Q ss_pred HHHHHHCCCHHHHHHHHHC
Q ss_conf 9999990983689888729
Q gi|254780451|r 878 EINHLKNGGILQAVLRQLS 896 (896)
Q Consensus 878 E~~~~~~GGiL~yvlr~la 896 (896)
|++||+||||||||||+|.
T Consensus 876 E~~y~~~GGiL~yVlr~~~ 894 (896)
T PRK12881 876 EVEYYKHGGILPYVLRQLL 894 (896)
T ss_pred HHHHHHCCCCHHHHHHHHH
T ss_conf 9999980891999999986
No 3
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=0 Score=2711.63 Aligned_cols=881 Identities=63% Similarity=1.041 Sum_probs=857.9
Q ss_pred CCCCCCCCCCEEEECCEEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77777001214432883799876687865157785445711999999887404866579999999861235545777663
Q gi|254780451|r 3 RSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEV 82 (896)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei 82 (896)
.++|+|+++++|+++|++|+||||+++++.+..++++|||||||||||+|||||+..+++++++++++|.. ....+.||
T Consensus 2 ~~~~~~~~~~~l~~~g~~~~y~~l~~~~~~~~~~~~~lP~sirvllEn~lR~~~~~~v~~~~v~~~~~w~~-~~~~~~ei 80 (884)
T PRK09277 2 SSLDSFKYRKTLEVGGKSYDYYDLKALEAIGLGDISRLPYSLRVLLENLLRNEDGRSVTEEDIEALAEWLP-KAKPDREI 80 (884)
T ss_pred CCCCCCCCCEEEEECCEEEEEEEHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-CCCCCCEE
T ss_conf 87787677507998998889963899876258985438812999999998607987688999999984342-28988525
Q ss_pred CCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64532522000003579999999999999719999992878981399868321100599889998999887542678999
Q gi|254780451|r 83 SYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRF 162 (896)
Q Consensus 83 ~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~F 162 (896)
||+|+||+|||||||||+|||||||||++++|+||++|||+||||||||||||||+||+++|+++|+++||+||+|||+|
T Consensus 81 ~f~p~Rv~lqDftgvPa~vDlAamRda~~~~G~dp~~inP~vpvdlviDHSv~vd~~g~~~a~~~N~~~Ef~RN~ERy~f 160 (884)
T PRK09277 81 PFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGDPDAFEKNVALEFERNEERYQF 160 (884)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53333587433779418763998999999819996774999986269757388623789689998888888765899999
Q ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCC
Q ss_conf 98774214880786088762167789863351131036886179830132068876444520123203434899999707
Q gi|254780451|r 163 LKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLG 242 (896)
Q Consensus 163 lkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlG 242 (896)
|||||++|+||||||||+||||||||||||+|||.++.+ ..++||||||||||||||+||||||||||||+|||++|+|
T Consensus 161 lkW~~~af~n~~vvPPg~GI~HQvNlE~la~vv~~~~~~-~~~~~pDtlvGTDSHTpminGLGvlgwGVGGieAeaaMlG 239 (884)
T PRK09277 161 LKWGQKAFDNFRVVPPGTGICHQVNLEYLAPVVWTRDGG-GLVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLG 239 (884)
T ss_pred HHHHHHHHCCCEEECCCCCEEEEEEHHHHCCEEEECCCC-CEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCC
T ss_conf 999998744767748998611000155525136861588-2599456200668766666752588862364999998748
Q ss_pred CCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 75141167289999976778644368899999998410221212799961550017875632120001003720377519
Q gi|254780451|r 243 CPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322 (896)
Q Consensus 243 qp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~ 322 (896)
||++|++||||||+|+|+|++|||||||||+|+++||++|||||||||||||+++||++||||||||+|||||||||||+
T Consensus 240 ~P~~~~~P~VvGv~LtG~L~~~vtatDlvL~it~~Lr~~GvvGkfVEffG~Gv~~LS~~dRATIaNM~pEyGAT~~~FP~ 319 (884)
T PRK09277 240 QPSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPI 319 (884)
T ss_pred CCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCHHHHHHCCCCCCCEEEECCC
T ss_conf 97585468689999851169997688999999999986386504999856513036620023333037344872557788
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHH
Q ss_conf 98999999863999889999998746410236767667886306999980314301226566564136777301166876
Q gi|254780451|r 323 DRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEM 402 (896)
Q Consensus 323 De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~ 402 (896)
|++|++||++|||++++++++|+|+|+|+||++. +++++.|++++|||||+|||+||||+||||+|++++++..|...+
T Consensus 320 D~~Tl~YL~~TGR~~~~v~lve~Y~k~qgL~~~~-~~~~~~Y~~vieiDLs~veP~iAGP~rP~d~v~ls~~~~~~~~~~ 398 (884)
T PRK09277 320 DEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDP-DSAEPVYTRVLELDLSTVEPSLAGPKRPQDRVPLSDLKEAFIKAL 398 (884)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC-CCCCCCCCEEEEEEHHHCEEECCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 8899999998399989999999999861731366-889975442699982004240158998331356888778888752
Q ss_pred HHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHH
Q ss_conf 64001100232102457888887555445753104676545999877889998898649875867307970161899999
Q gi|254780451|r 403 NEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEY 482 (896)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~ 482 (896)
...... ...+..+.|.||+|+|||||||||||||++|++||||||||+++|||++|||||+++|||+||++|
T Consensus 399 ~~~~~~--------~~~~~~~~l~~G~VvIAAItSCTNTSnp~~miaAgLlAkkAv~~GL~vkp~VKtslaPGS~vV~~y 470 (884)
T PRK09277 399 EAEAGN--------KGNGGEYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKRKPWVKTSLAPGSKVVTEY 470 (884)
T ss_pred CCCCCC--------CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHH
T ss_conf 221244--------677754224677379998621247887889999999999999739976887333338877999999
Q ss_pred HHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHH
Q ss_conf 99858857777505302055322421277768830221011366358786336766665468543310005978999998
Q gi|254780451|r 483 LVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYA 562 (896)
Q Consensus 483 L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~A 562 (896)
|+++||+++|+++||++++|||+|||||||||+++++++|.++++.+++|+|||||||||+||.+++|||||||||+|||
T Consensus 471 L~~~GLl~~L~~lGf~v~g~gC~tCIGnSGpL~~~i~~~I~~~~l~~~sVlSgNRNFeGRi~p~~~anyLaSP~LVvAyA 550 (884)
T PRK09277 471 LEKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASPPLVVAYA 550 (884)
T ss_pred HHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHH
T ss_conf 99868788999759789413342024788889815652023078446445515768776689651204622809999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 51612223100235548888632001568885788888764158321000122334787122015578776205674333
Q gi|254780451|r 563 LAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKST 642 (896)
Q Consensus 563 iaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~St 642 (896)
|||+|+||+.+||||+|++|++|||+||||+++||++++.++++|++|++.|..+++|++.|+.|++++|++|+|+++||
T Consensus 551 lAG~i~~d~~~dpLg~d~~G~~VyL~DiwPs~~EI~~~~~~~v~p~~f~~~y~~i~~g~~~w~~l~~~~~~~y~wd~~St 630 (884)
T PRK09277 551 LAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKVYADVFKGDEEWNEIQVPSGPLYDWDPDST 630 (884)
T ss_pred HHCEEECCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 74804136666875528999863143458982557899873479767556313445797333313479886435588875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 42378876776545543324358558999658857233164565554473788898749886563145653023577766
Q gi|254780451|r 643 YVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMR 722 (896)
Q Consensus 643 yI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~R 722 (896)
|||+||||++++.++++.++|++||||+++|||||||||||||+|+++||||+||+++||.++|||||||||||||||||
T Consensus 631 yI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~gv~~~dfNsYgsrRgNhevm~R 710 (884)
T PRK09277 631 YIRNPPYFEGMLAEPGPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVPPKDFNSYGSRRGNHEVMMR 710 (884)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCHHHCCCCCHHHHH
T ss_conf 42279864556677888767557658999489756155076777777880678999739975660130220267233210
Q ss_pred HHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEC
Q ss_conf 52036012232125777657722453899787379999989981998899946777867307999886676170899976
Q gi|254780451|r 723 GTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAE 802 (896)
Q Consensus 723 GtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~ 802 (896)
|||+||||+|+|+ ++++||||+|+|+|++|+||||||+||++|+|||||||+|||+|||||||||||+||||||||||
T Consensus 711 gtFaNiri~N~l~--~~~egg~T~~~p~g~~~~i~daA~~Y~~~g~plVViAG~nYG~GSSRDwAAkgp~lLGVkAVIAe 788 (884)
T PRK09277 711 GTFANIRIRNEMV--PGVEGGYTRHEPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGVKAVIAE 788 (884)
T ss_pred HCCCCHHHHHHCC--CCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCHHHCCEEEEEEE
T ss_conf 0113345664306--77668704755898540199999999982997699956766777528899745443257999995
Q ss_pred CHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHH
Q ss_conf 47898885053552322331789898881989743899726322589973899998189967999999873899999999
Q gi|254780451|r 803 SFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHL 882 (896)
Q Consensus 803 SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~ 882 (896)
||||||||||||||||||||.+|++|++|+|+|+|+|+|.++++++|+++++|+++++||++++|++++|+||+.|++||
T Consensus 789 SFeRIHrsNLvgmGVLPL~F~~g~~~~~L~l~g~E~~~I~g~~~l~p~~~v~v~~~~~dG~~~~~~~~~ridt~~E~~y~ 868 (884)
T PRK09277 789 SFERIHRSNLVGMGVLPLQFKPGENRKTLGLDGTETFDIIGLEELKPRATVTVVITRADGEVVEVPVTCRIDTAVEVDYY 868 (884)
T ss_pred EHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHHHH
T ss_conf 06889887505266254565799898772999773498746455799886899999389988999999964999999999
Q ss_pred HCCCHHHHHHHHHC
Q ss_conf 90983689888729
Q gi|254780451|r 883 KNGGILQAVLRQLS 896 (896)
Q Consensus 883 ~~GGiL~yvlr~la 896 (896)
+||||||||||+|.
T Consensus 869 ~~GGiL~yVlr~~l 882 (884)
T PRK09277 869 RNGGILQYVLRDLL 882 (884)
T ss_pred HCCCHHHHHHHHHH
T ss_conf 80891999999996
No 4
>PTZ00092 aconitate hydratase; Provisional
Probab=100.00 E-value=0 Score=2669.19 Aligned_cols=875 Identities=54% Similarity=0.902 Sum_probs=842.4
Q ss_pred CCCCC-CCCCEEEECCEEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77770-01214432883799876687865157785445711999999887404866579999999861235545777663
Q gi|254780451|r 4 SLNSF-NCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEV 82 (896)
Q Consensus 4 ~~~~~-~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei 82 (896)
+.|+| +++++|+++|++|+||+|++++.. ++++|||||||||||+|||||+..+++++++++++|... ...+.||
T Consensus 3 ~~~~~~~~~~~l~~~g~~~~y~~l~~l~~~---~~~~LP~s~rillEn~lR~~d~~~v~~~~v~~~~~w~~~-~~~~~ei 78 (887)
T PTZ00092 3 RPNPFEKVKKTLKVDGGTAKYYKLNELHDP---RYNSLPYSIRVLLESAVRNCDEFDVTSKDVENILNWKEN-CKKQIEI 78 (887)
T ss_pred CCCCHHHHHHHEEECCEEEEEEEHHHHCCC---CCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CCCCCEE
T ss_conf 898068887557479836999875783647---845388039999998876168876899999999731003-8988534
Q ss_pred CCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64532522000003579999999999999719999992878981399868321100599889998999887542678999
Q gi|254780451|r 83 SYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRF 162 (896)
Q Consensus 83 ~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~F 162 (896)
+|+|+||+|||||||||+||||||||+++++|+||++|||++|||||||||||||+||+++|+++|+++||+||+|||+|
T Consensus 79 ~f~p~Rv~lqDftgvP~~vDlAamR~a~~~~g~dp~~inP~~pvdlviDHSv~vd~~g~~~a~~~N~~~E~~RN~ERy~f 158 (887)
T PTZ00092 79 PFKPARVLLQDFTGVPCVVDLAAMRDAMKRLGGDPNKINPLIPVDLVIDHSVQVDFSRTPDALELNQKTEMERNRERFEF 158 (887)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEECEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 43332477342668319999998999999818996552899986169755388861688658888788887640687777
Q ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCC
Q ss_conf 98774214880786088762167789863351131036886179830132068876444520123203434899999707
Q gi|254780451|r 163 LKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLG 242 (896)
Q Consensus 163 lkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlG 242 (896)
|||||++|+||||||||+||||||||||||+|||.+ ++++||||||||||||||+||||||||||||+|||++|+|
T Consensus 159 lkW~q~af~n~rvvPPg~GI~HQvnLE~la~vv~~~----~~~~~pdtlvGTDSHTpminGLGvlgwGVGGieAeaaMlG 234 (887)
T PTZ00092 159 LKWGSQAFKNLLIVPPGSGIVHQVNLEYLARVVFNK----DGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEATMLG 234 (887)
T ss_pred HHHHHHHHCCCEECCCCCCEEEEEEHHHHHHHEECC----CCEECCCCEECCCCCCCCCCCCEEEEECCCHHHHHHHHCC
T ss_conf 788888743835428998644321065543524557----8656577521467777777852578864378999998758
Q ss_pred CCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 75141167289999976778644368899999998410221212799961550017875632120001003720377519
Q gi|254780451|r 243 CPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322 (896)
Q Consensus 243 qp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~ 322 (896)
||++|++||||||+|+|+|++|||||||||+|+++||++|||||||||||||+++||++||||||||+|||||||||||+
T Consensus 235 ~P~~~~~P~VvGv~LtG~L~~gvtatDlvL~it~~Lr~~GvvGkfVEffG~G~~~LS~~dRATIaNM~pEyGAT~~~FP~ 314 (887)
T PTZ00092 235 QPISMVLPQVVGFKLVGKLSEGCTATDLVLTVTSNLRKLGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPI 314 (887)
T ss_pred CCCEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCEEEECCC
T ss_conf 96041078389999883069997588999999988743276605999977752017723420002057433875577887
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHH
Q ss_conf 98999999863999889999998746410236767667886306999980314301226566564136777301166876
Q gi|254780451|r 323 DRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEM 402 (896)
Q Consensus 323 De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~ 402 (896)
|++|++||++|||++++++++|+|+|+|+||++. +++++|++++|||||+|||+||||+||||++++++++..|...+
T Consensus 315 D~~tl~YL~~TgR~~~~v~lve~y~k~q~l~~~~--~~~~~Y~~vieiDLs~veP~iAGP~rP~d~v~l~~~~~~f~~~~ 392 (887)
T PTZ00092 315 DNETIDYLLQTGRSAEKVELIEEYLKANGLFRTG--AEKIEYSDVLELDLSTVQPSVAGPKRPQDNVPLSDLKQDFTACL 392 (887)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCEEEEEEHHHCHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7789999998399889999999999863511268--77875453799894637132328998022446899788898865
Q ss_pred HHHCCCHH--------HHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
Q ss_conf 64001100--------2321024578888875554457531046765459998778899988986498758673079701
Q gi|254780451|r 403 NEYYKKSH--------TLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAP 474 (896)
Q Consensus 403 ~~~~~~~~--------~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~P 474 (896)
........ .....+...+.++.|.||+|+|||||||||||||++|+|||||||||+++|||++|||||+++|
T Consensus 393 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~G~VviAaItSCTNTSnp~vm~aAgLlAkkAv~~GL~v~p~VktslaP 472 (887)
T PTZ00092 393 TAKVGFKGFGIPEEEHAKKVKFTYDGQEYTLDHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSP 472 (887)
T ss_pred HCCCCCCCCCCCCHHCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
T ss_conf 13234456677500114443131157400027883899997253466877799999999999997698458970044688
Q ss_pred CCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECC
Q ss_conf 61899999998588577775053020553224212777688302210113663587863367666654685433100059
Q gi|254780451|r 475 GSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLS 554 (896)
Q Consensus 475 GS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaS 554 (896)
||++|++||+++||+++|+++||++++|||+|||||||||+++++++|.+++++++||+|||||||||+||.+++|||||
T Consensus 473 GS~vV~~yL~~~Gll~~L~~lGf~vvg~gC~tCIGnsGpl~~~i~~~i~~~~l~~~sVlSgNRNFeGRi~p~~~anyLaS 552 (887)
T PTZ00092 473 GSKVVTKYLEASGLQKYLEKLGFYTTGYGCMTCIGNSGELDPEVSECINNNDLVAAAVLSGNRNFEGRIHPLTRANYLAS 552 (887)
T ss_pred CHHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCEECCC
T ss_conf 67999999998686889997596892367856527778888303313345881598874378885445686301113168
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 78999998516122231002355488886320015688857888887641583210001223347871220155787762
Q gi|254780451|r 555 PPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESET 634 (896)
Q Consensus 555 P~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~ 634 (896)
||||+||||||+|+||+.+|||| +++|++|||+||||+++||++++.++++|++|++.|.++++|+++|+.|++|++++
T Consensus 553 P~lVvAyAlaG~i~~d~~~dplg-~~~G~~VyL~DiwPs~~Ei~~~~~~~v~p~~f~~~y~~i~~g~~~w~~l~~~~~~~ 631 (887)
T PTZ00092 553 PPLVVAFALAGRVNIDFASEPIG-VKTGKPVFLRDIWPSKEEISALENQYVKPQLFKEVYSNITTGNKQWNELQVPKGEL 631 (887)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 79999999718877766667665-77788422435689647665675345680111000356567884552035787666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 05674333423788767765455433243585589996588572331645655544737888987498865631456530
Q gi|254780451|r 635 YMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRR 714 (896)
Q Consensus 635 y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRR 714 (896)
|+||++|||||+||||++++.++++..+|++||||+++|||||||||||||+|+++||||+||.++||.++|||||||||
T Consensus 632 y~Wd~~STyI~~pPffd~~~~~~~~~~~i~~arvL~~lGDsiTTDHISPAG~I~~~sPagkyL~~~gv~~~dfNsygsRR 711 (887)
T PTZ00092 632 YEWDPKSTYIHHPPYFEGMTLEPPKIKPIKNAACLLLLGDSITTDHISPAGNIAKDSPAAKFLMEKGVERKDFNTYGSRR 711 (887)
T ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 77898764442798744334467767775687788862897582105815387667820556875698655521056652
Q ss_pred CCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 23577766520360122321257776577224538997873799999899819988999467778673079998866761
Q gi|254780451|r 715 GNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794 (896)
Q Consensus 715 gNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lL 794 (896)
|||||||||||+||||+|+|++ .+||||+|+|++++|+||||||+||++|+|||||||+|||+|||||||||||+||
T Consensus 712 gNhevM~RgtFaNiri~N~l~~---~~Gg~t~~~p~ge~~~iydaA~~Yk~~g~plVVvAGknYG~GSSRDwAAkgp~lL 788 (887)
T PTZ00092 712 GNDEVMVRGTFANTRLGNKLVP---QTGPNTVYVPTGELMSIFDAAMKYKQENTPLIVLAGKEYGSGSSRDWAAKGPYLQ 788 (887)
T ss_pred CCHHHHHHHHHCCCHHHHHCCC---CCCCCEEECCCCCEECHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCHHHC
T ss_conf 6717765310123202210056---6687424358885611799999999819975999467647875499997476553
Q ss_pred CEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEEC
Q ss_conf 70899976478988850535523223317898988819897438997263225899738999981899679999998738
Q gi|254780451|r 795 GVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCID 874 (896)
Q Consensus 795 GVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~d 874 (896)
||||||||||||||||||||||||||||++|++|++|+|+|+|+|+|.++++++|+++++++ +++..+|++++|+|
T Consensus 789 GVkAVIAeSFeRIHrsNLvgmGVLPL~F~~g~~~~~l~l~g~E~~~I~~~~~l~p~~~v~v~----~~~~~~f~~~~rid 864 (887)
T PTZ00092 789 GVKAVIAESFERIHRSNLVGMGILPLQFLNGESATSLGLTGKEKFTINLKGNLRPGQTVEVQ----TDTGKSFDTLLRID 864 (887)
T ss_pred CEEEEEEEEEHHHHHHHCCCCCEEEEEECCCCCHHHHCCCCCEEEEEECCCCCCCCCEEEEE----CCCCCEEEEEEECC
T ss_conf 86899994128887873142564645657999878748998628998456778999879998----79932899999589
Q ss_pred CHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 9999999990983689888729
Q gi|254780451|r 875 TLDEINHLKNGGILQAVLRQLS 896 (896)
Q Consensus 875 t~~E~~~~~~GGiL~yvlr~la 896 (896)
|+.|++||+||||||||||+|-
T Consensus 865 t~~E~~y~~~GGiL~yVlr~~l 886 (887)
T PTZ00092 865 TEIEVKYYKNGGILQYVLRKLI 886 (887)
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999983897999999972
No 5
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=0 Score=2438.16 Aligned_cols=860 Identities=62% Similarity=1.030 Sum_probs=835.1
Q ss_pred CCCCCCCEEEECCEEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 77001214432883799876687865157785445711999999887404866579999999861235545777663645
Q gi|254780451|r 6 NSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEVSYR 85 (896)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei~f~ 85 (896)
++|.++++|.++++.|+||+|++++..+ .+++||||+|||+||++|++|+ ++++++++++|... +..+.||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~y~~l~~~~~~~--~~~~Lp~s~kiL~e~l~r~~d~---~~~~i~~~~~w~~~-~~~~~ei~~~ 74 (861)
T COG1048 1 DSFKARKTLTVGGKTYYYYDLPKLEESG--KISKLPYSLKILLENLLRGEDG---TEEHIEALARWLPS-GKPEKEIAFR 74 (861)
T ss_pred CCCCHHHHCCCCCCEEEEEEHHHHHHCC--CCCCCCHHHHHHHHHHCCCCCC---CHHHHHHHHCCCCC-CCCCCCCCCC
T ss_conf 9531222115587335774266665204--5566871599999876156566---06678987503334-6755455654
Q ss_pred CCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32522000003579999999999999719999992878981399868321100599889998999887542678999987
Q gi|254780451|r 86 FSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKW 165 (896)
Q Consensus 86 p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkw 165 (896)
|+||+|||||||||+||+|+|||+++++|+||.+|||++|||||||||||||.+|.++||++|+++||+||.|||+||||
T Consensus 75 p~RVvmQD~tgvpa~vdla~mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w 154 (861)
T COG1048 75 PARVVMQDFTGVPAVVDLAAMRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKW 154 (861)
T ss_pred CCEEEEECCCCCCEEEEHHHHHHHHHHHCCCHHHCCCCCCCEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 23034420248781677415798999866894442887752046255056615787256553335675630688999999
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 74214880786088762167789863351131036886179830132068876444520123203434899999707751
Q gi|254780451|r 166 GQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPI 245 (896)
Q Consensus 166 a~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~ 245 (896)
+||+|+||+|||||+||||||||||||+|||... ++|||||+|||||||||+||||+|||||||+|||++||||||
T Consensus 155 ~~kaf~n~~vvPPGtGIiHQVnLE~la~vv~~~~----g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~ 230 (861)
T COG1048 155 AAKAFYNFRVVPPGTGIIHQVNLEYLAKVVWAKP----GVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPW 230 (861)
T ss_pred HHHHCCCCEEECCCCCEEEEEHHHHHCCEEECCC----CCCCCCCEEECCCCCCCCCCCEEEEECCCHHHHHHHHCCCCE
T ss_conf 9985178189789984653142744100010267----655667446426888776861578865652999999838965
Q ss_pred EECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHH
Q ss_conf 41167289999976778644368899999998410221212799961550017875632120001003720377519989
Q gi|254780451|r 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRG 325 (896)
Q Consensus 246 ~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~ 325 (896)
||++|+||||+|+|+|++|||||||||+|+++||++|||||||||||||+++||++||+|||||+|||||||||||+|++
T Consensus 231 ~~~iP~VvGVkLtGkl~~gvTatDlvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~ 310 (861)
T COG1048 231 YMLIPEVVGVKLTGKLPEGVTATDLVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEE 310 (861)
T ss_pred EEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCEEEECCCCCCCCCCCCCCCCHH
T ss_conf 84379678999734579997788999999989876274542899977736327766640010356211123154778889
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHH
Q ss_conf 99999863999889999998746410236767667886306999980314301226566564136777301166876640
Q gi|254780451|r 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEY 405 (896)
Q Consensus 326 T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~ 405 (896)
|++||++|||++++++++|+|+|+|+||++. ++++|+|++++|||||+|+|+||||+||||++++++++..|...+.+.
T Consensus 311 tl~YL~~tgR~~~~i~lve~y~~~~~l~~~~-~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~ 389 (861)
T COG1048 311 TLDYLRLTGRSEEQVALVEAYAKAQGLWYDP-ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREI 389 (861)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCEEEEEEHHHCCCCCCCCCCHHHCEEHHHHHHHHHHHHHHH
T ss_conf 9999998599567778999999973465776-666775240699885657301159998354208898888898755443
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 01100232102457888887555445753104676545999877889998898649875867307970161899999998
Q gi|254780451|r 406 YKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
..+.. +...+. .+.||+|+||+||||||||||++|+||+||||||+++|++++|||||+++|||++|++||++
T Consensus 390 ~~~~~-----~~~~~~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~ 462 (861)
T COG1048 390 EIKRV-----YSLLGK--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEK 462 (861)
T ss_pred HCCCC-----CCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 02210-----012455--47887589999840368997889999999876677605677997157657885899999997
Q ss_pred CCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHC
Q ss_conf 58857777505302055322421277768830221011366358786336766665468543310005978999998516
Q gi|254780451|r 486 AGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG 565 (896)
Q Consensus 486 ~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG 565 (896)
+||+++|+++||++++|||||||||||||+++++++|.+++++++||||||||||||+||.+++||||||+||+||||||
T Consensus 463 ~Gl~~~L~~lGf~iv~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG 542 (861)
T COG1048 463 AGLLPYLEKLGFNIVGYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAG 542 (861)
T ss_pred CCCHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHC
T ss_conf 58788999649788445564664899998705542345576178753014778886789746604115829999998752
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12223100235548888632001568885788888764158321000122334787122015578776205674333423
Q gi|254780451|r 566 NVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVR 645 (896)
Q Consensus 566 ~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~ 645 (896)
+|++|+.+||+|++.+|++|||+||||+.+||.+.+...+++++|++.|.++|+ |+.++++++++|.|++.||||+
T Consensus 543 ~i~~d~~~~~lg~~~~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~ 618 (861)
T COG1048 543 TINFDLTTDPLGTDNDGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIR 618 (861)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHHHCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 443686447445688888103210478817778887622485440010011003----3445678767300787674214
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 78876776545543324358558999658857233164565554473788898749886563145653023577766520
Q gi|254780451|r 646 NPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTF 725 (896)
Q Consensus 646 ~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtF 725 (896)
+||||+++..++.+ |++||+|++||||||||||||||+|+++||||+||.++||.+.||||||||||||||||||||
T Consensus 619 ~pP~f~~~~~~~~~---~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tf 695 (861)
T COG1048 619 LPPFFDGMGAEPKP---IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTF 695 (861)
T ss_pred CCCCCCCCCCCCCC---CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHH
T ss_conf 89866664345544---456425666368665476667877777885420244249973466421013453777645412
Q ss_pred CCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHH
Q ss_conf 36012232125777657722453899787379999989981998899946777867307999886676170899976478
Q gi|254780451|r 726 SNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFE 805 (896)
Q Consensus 726 aNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFe 805 (896)
+|||++|+|++. |||||+|+|+|+ ||||||+||++++|||||||+|||+|||||||||||+|||||||||||||
T Consensus 696 aNir~~n~~~~~---~gg~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFe 769 (861)
T COG1048 696 ANIRIRNEMVPG---EGGYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFE 769 (861)
T ss_pred CCCCCCCCCCCC---CCCCEEECCCCH---HHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCHHCCEEEEEEHHHH
T ss_conf 252000100366---676134247732---78999988874997599960468888638888427420373325303688
Q ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCC
Q ss_conf 98885053552322331789898881989743899726322589973899998189967999999873899999999909
Q gi|254780451|r 806 RIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNG 885 (896)
Q Consensus 806 RIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~G 885 (896)
|||||||||||||||||+++++|++|+++|+|.++|.++++++|+.++++++++.||.+.++.+.+|+||+.|++|||||
T Consensus 770 RIHrSNLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~G 849 (861)
T COG1048 770 RIHRSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLENLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAG 849 (861)
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHHHHHCC
T ss_conf 99886123441343640688776552778961576124456799726999997689856777622002989999999827
Q ss_pred CHHHHHHHHHC
Q ss_conf 83689888729
Q gi|254780451|r 886 GILQAVLRQLS 896 (896)
Q Consensus 886 GiL~yvlr~la 896 (896)
||||||+|++.
T Consensus 850 GiL~~v~~~~~ 860 (861)
T COG1048 850 GILNYVKRDLL 860 (861)
T ss_pred CHHHHHHHHHH
T ss_conf 66989999850
No 6
>KOG0452 consensus
Probab=100.00 E-value=0 Score=2410.67 Aligned_cols=877 Identities=52% Similarity=0.897 Sum_probs=844.9
Q ss_pred CCCCC-CCCCEEEECCEEEEEEEHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77770-01214432883799876687865157785445711999999887404866579999999861235545777663
Q gi|254780451|r 4 SLNSF-NCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEV 82 (896)
Q Consensus 4 ~~~~~-~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei 82 (896)
+-++| +...+|...+.-|+||||+++. .++++||||||||||+++||||++.++++|+++|++|. ++.....||
T Consensus 5 ~~~~f~~~~~~l~~~~~~~kyf~l~~l~----~ryd~LP~SIrvLLEsAvRnCD~f~v~k~DVe~IldW~-~t~~k~vEv 79 (892)
T KOG0452 5 SENPFAQLIETLPKPGGVYKYFDLPKLN----SRYDKLPYSIRVLLESAVRNCDNFHVKKKDVENILDWK-NTQKKQVEV 79 (892)
T ss_pred CCCCHHHHHHCCCCCCCCCEEEECCCCC----CCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCC-CCCCCCEEE
T ss_conf 3050899974157888854055432346----53353754379999998744744043387788873766-567553252
Q ss_pred CCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64532522000003579999999999999719999992878981399868321100599889998999887542678999
Q gi|254780451|r 83 SYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRF 162 (896)
Q Consensus 83 ~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~F 162 (896)
||+|+||+|||||||||+|||||||||+.++|+||+||||.+|+|||||||||||+.++++|+++|+++||+||+|||.|
T Consensus 80 pFkPARViLQDFTGvPavVD~AaMRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~F 159 (892)
T KOG0452 80 PFKPARVILQDFTGVPAVVDFAAMRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTF 159 (892)
T ss_pred CCCCCEEEEECCCCCCHHEEHHHHHHHHHHCCCCHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHCCEEEEECCHHHHHH
T ss_conf 35641566200469825303798999998718997774988875347621168731338777752450022004445135
Q ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCC
Q ss_conf 98774214880786088762167789863351131036886179830132068876444520123203434899999707
Q gi|254780451|r 163 LKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLG 242 (896)
Q Consensus 163 lkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlG 242 (896)
|||++++|+|+.|+|||+||+|||||||||||||..+ .++|||++|||||||||++|||++|||||||||||+|||
T Consensus 160 lKWgs~af~NmlivPPGsGivHQvNLEYLaRvVF~~~----~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLG 235 (892)
T KOG0452 160 LKWGSRAFDNMLIVPPGSGIVHQVNLEYLARVVFESK----DLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLG 235 (892)
T ss_pred HHHHHHHHCCEEEECCCCCEEEEEEHHHHHHEEECCC----CEECCCCCCCCCCCCEEECCCCEEECCCCCEEHHHHHHC
T ss_conf 4153476444387679986357750663221033467----535565401456751466264243023465313245516
Q ss_pred CCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 75141167289999976778644368899999998410221212799961550017875632120001003720377519
Q gi|254780451|r 243 CPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322 (896)
Q Consensus 243 qp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~ 322 (896)
||+.|.+|+|||++|+|+|.++||++|++|+||++||+.||+||||||||+|+++||+.||+||+||+||||||.||||+
T Consensus 236 qpiSmvlP~ViG~~L~Gkl~~~vTstDlVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPv 315 (892)
T KOG0452 236 QPISMVLPEVIGYKLTGKLSPLVTSTDLVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPV 315 (892)
T ss_pred CCHHEECCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHCCCEEEEEEECCCCCEECHHHHHHHHHCCCCCCCEEEEECC
T ss_conf 85201044203578615667873010003569999887364213588854862003011366664228000645332003
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHH
Q ss_conf 98999999863999889999998746410236767667-88630699998031430122656656413677730116687
Q gi|254780451|r 323 DRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE-KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTE 401 (896)
Q Consensus 323 De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~-~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~ 401 (896)
|+.|+.||++|||+++.++.+|+|.|+.++|++..+.. ++.|++++++||++++|+|+||+||||||++++|+.+|..|
T Consensus 316 D~vtl~yl~~Tgrs~~~~~~i~~yLka~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~sc 395 (892)
T KOG0452 316 DEVTLQYLKQTGRSEEKLDIIEKYLKAVKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSC 395 (892)
T ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 24678999870874778899999999876655035744685300689984473432168999975543065677789986
Q ss_pred HHHHCC--------CHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 664001--------100232102457888887555445753104676545999877889998898649875867307970
Q gi|254780451|r 402 MNEYYK--------KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCA 473 (896)
Q Consensus 402 ~~~~~~--------~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~ 473 (896)
+++... +.......+...|..++|.||+|||||||||||||||++|++||||||||+++||+|+||+|||++
T Consensus 396 L~~~vgFKgFai~~e~q~~~v~f~~~g~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLs 475 (892)
T KOG0452 396 LDSKVGFKGFAIAPEAQSKSVEFQYDGTTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLS 475 (892)
T ss_pred HCCCCCCCCCCCCHHHHHCEEEEEECCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEECCEEECCCC
T ss_conf 35766633222485675033899988966674168599998710348999277645668877888647602310540448
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEC
Q ss_conf 16189999999858857777505302055322421277768830221011366358786336766665468543310005
Q gi|254780451|r 474 PGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLL 553 (896)
Q Consensus 474 PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLa 553 (896)
|||.+|+.||.++|+++||+++||.|+||||++||||||||++.+..+|.+++|++++|+|||||||||+||.+++||||
T Consensus 476 PGSgvVt~YL~~SGv~pyL~klGF~IvGYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLA 555 (892)
T KOG0452 476 PGSGVVTKYLSESGVLPYLEKLGFDIVGYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLA 555 (892)
T ss_pred CCCCHHHHHHHHCCCHHHHHHCCCEEECCCCCEECCCCCCCCHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHCC
T ss_conf 99743032354435366798619426533221211688878878987533388489988406877665116641000014
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 97899999851612223100235548888632001568885788888764158321000122334787122015578776
Q gi|254780451|r 554 SPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633 (896)
Q Consensus 554 SP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~ 633 (896)
|||||+||||||++++|+.+||||++++|+.|||+|||||++||++++.++|.|.||++.|+.|..|++.|+.|++|++.
T Consensus 556 SPpLvvaYaiaGtV~IDfe~eplg~~~~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~ 635 (892)
T KOG0452 556 SPPLVVAYAIAGTVNIDFETEPLGVDPDGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSK 635 (892)
T ss_pred CCHHHHHHHHCCEEECCEECCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCCC
T ss_conf 86477664442513501002554318998768875147877999999886002899999999886167114420277663
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 20567433342378876776545543324358558999658857233164565554473788898749886563145653
Q gi|254780451|r 634 TYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTR 713 (896)
Q Consensus 634 ~y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsR 713 (896)
+|+||++||||+.||||++|+.++|..++|++|+||+.|||+||||||||||+|.++|||++||.+||+.|+||||||||
T Consensus 636 Ly~Wd~~STYI~~ppfF~~mT~~~p~~~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsR 715 (892)
T KOG0452 636 LYPWDPKSTYIKEPPFFEGMTRDLPGPQSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSR 715 (892)
T ss_pred EECCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCC
T ss_conf 02158887511078301131237998310101168886067433256487753133788888887669983440220135
Q ss_pred CCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH
Q ss_conf 02357776652036012232125777657722453899787379999989981998899946777867307999886676
Q gi|254780451|r 714 RGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRL 793 (896)
Q Consensus 714 RgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~l 793 (896)
|||++||.|||||||||.|+++. +.|..|.|.|+||++.||||||+|+++|+|+||+||++||+|||||||||||.|
T Consensus 716 RGND~vMaRGTFANIrlvNkl~~---k~gP~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~L 792 (892)
T KOG0452 716 RGNDAVMARGTFANIRLVNKLLS---KVGPKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFL 792 (892)
T ss_pred CCCHHHHHCCCCHHHHHHHHHHC---CCCCCEEECCCCCEECHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCHH
T ss_conf 57534531454005588998741---569854756898751175689988755995699932434788743312139612
Q ss_pred CCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHH-CCCCCEEEEEEEECCCCEEEEEEEEE
Q ss_conf 17089997647898885053552322331789898881989743899726322-58997389999818996799999987
Q gi|254780451|r 794 LGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKT-ISPRQESTLEIHYSDGTFKCVPIICC 872 (896)
Q Consensus 794 LGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~-l~p~~~v~v~i~~~~g~~~~~~~~~r 872 (896)
||||||||||||||||||||||||+||||..|+|+|+|+|+|.|+|+|...++ |+|++.++|.. .+|+ .|++++|
T Consensus 793 lGvKAViaeS~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~~lkPgq~i~v~~--d~Gk--~F~~~~r 868 (892)
T KOG0452 793 LGVKAVIAESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPENILKPGQDITVTT--DTGK--VFVCTLR 868 (892)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHCCCCCCEEEEEECCCCCCCCCCEEEEEE--CCCC--EEEEEEE
T ss_conf 44699998889888763544420344442489970111766604689867734478986589992--5895--8999998
Q ss_pred ECCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 389999999990983689888729
Q gi|254780451|r 873 IDTLDEINHLKNGGILQAVLRQLS 896 (896)
Q Consensus 873 ~dt~~E~~~~~~GGiL~yvlr~la 896 (896)
+||+.|+.||+||||||||+|+|+
T Consensus 869 FdteVeltyy~~GGiL~y~iRk~~ 892 (892)
T KOG0452 869 FDTEVELTYYKNGGILNYMIRKLS 892 (892)
T ss_pred CCCCEEEEEEECCCCHHHHHHHCC
T ss_conf 045168999716888899786319
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent; InterPro: IPR012708 This entry represents Fe/S-dependent 2-methylisocitrate dehydratase (AcnD; 4.2.1.99 from EC), which is part of the 2-methylcitrate (2-MC) cycle that occurs in certain fungi and bacteria. The 2-MC cycle is involved in the degradation of propionyl-CoA via 2-methylcitrate, with AcnD functioning after PrpD and before PrpB. AcnD acts to catalyse the dehydration of 2-methylcitrate and citrate to 2-methyl-cis-aconitate and cis-aconitate, respectively, as well as to catalyse the hydration of cis-aconitate. However, 2-methylisocitrate and isocitrate were not substrates for AcnD, indicating that AcnD only catalyses the first half of the aconitase-like dehydration reactions . The enzyme from the fungus Yarrowia lipolytica (Candida lipolytica) does not act on isocitrate. AcnD is homologous to aconitases A and B. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (IPR004406 from INTERPRO) . Information about related proteins can be found at Protein of the Month: Aconitase ..
Probab=100.00 E-value=0 Score=1678.09 Aligned_cols=853 Identities=44% Similarity=0.778 Sum_probs=799.2
Q ss_pred CCCEEEECCEEEEEEEHHH-HHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 1214432883799876687-865157785445711999999887404866579999999861235545777663645325
Q gi|254780451|r 10 CRSILSVGGIDYVYYSLPK-AEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSR 88 (896)
Q Consensus 10 ~~~~l~~~~~~~~~~~l~~-~~~~~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~R 88 (896)
.|+.| .+....|||-.+ ++...+..+++|||+-|||.||++|+|+...+.+ .+..++. . +.+.+.|++|+|
T Consensus 4 yrk~l--~~~~~~yfd~r~a~e~~~PG~y~~lPyt~r~laenlv~~~~~~~l~~-~l~q~ie---~--k~~ldfPW~Par 75 (864)
T TIGR02333 4 YRKAL--PGTDLDYFDARAAVEAIKPGAYDKLPYTSRVLAENLVRRCDPETLSA-SLKQLIE---R--KRDLDFPWYPAR 75 (864)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH-HHHHHHH---H--HHCCCCCCCCHH
T ss_conf 33357--85310255678999740887532365167888999874168779999-9999873---1--211688866502
Q ss_pred HHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2200000357999999999999971999999287898139986832110059-988999899988754267899998774
Q gi|254780451|r 89 VLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSG-NKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896)
Q Consensus 89 v~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g-~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896)
|+|||..|+.||||||.+||++++.||||.++||.|+++|++|||+.|++.| .++|+++|.+.|-+||.+||.|+.|++
T Consensus 76 vvChdilGqtalvdlaGlrdaia~~GGdPa~vnPvv~~qlivdhslave~~G~d~~af~knr~~edrrnedrfhfi~W~~ 155 (864)
T TIGR02333 76 VVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVETQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTK 155 (864)
T ss_pred EEHHHHHCHHHHHHHHHHHHHHHHCCCCCCEECCEEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 00012301145566653579998438895200440224456631000110477878887543343100211257789998
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEE
Q ss_conf 21488078608876216778986335113103688617983013206887644452012320343489999970775141
Q gi|254780451|r 168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISM 247 (896)
Q Consensus 168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~ 247 (896)
++|+|+.|+|+|+||+||+|||.+++||..+ +|++|||++||||||||.+.+||++++||||.|||.+|||.+.+|
T Consensus 156 ~af~nv~vi~~GnGimhqinle~msPv~~~~----~GvafPd~~vGtdshtPhvd~lGv~~~GvGGleae~vmlGr~s~m 231 (864)
T TIGR02333 156 KAFKNVDVIPAGNGIMHQINLEKMSPVVQVK----NGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMM 231 (864)
T ss_pred HHHHHCEEECCCCCEEEEECHHHCCCEEEEC----CCCCCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCEEECCCHHH
T ss_conf 8754200001688424431031417412414----653257530026677763113104466305410010211450010
Q ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH
Q ss_conf 16728999997677864436889999999841022121279996155001787563212000100372037751998999
Q gi|254780451|r 248 LLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI 327 (896)
Q Consensus 248 ~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~ 327 (896)
++|++|||+|+|+.++++||+|++|.+++.||+.-+++.++||||+|.++|++.||+||+||+||||||+++|.+|++|+
T Consensus 232 rlP~ivGv~l~G~~~~~itatd~vlalteflr~~~vv~~y~ef~GeGa~~l~~Gdratisnm~Pe~Gata~mf~id~qt~ 311 (864)
T TIGR02333 232 RLPDIVGVELTGKRQPGITATDIVLALTEFLRKEKVVSAYLEFFGEGARALTLGDRATISNMTPEYGATAAMFAIDEQTI 311 (864)
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 07523445651655666427889999999876424665556650565101211430011015742001466777667778
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCC
Q ss_conf 99986399988999999874641023676766788630699998031430122656656413677730116687664001
Q gi|254780451|r 328 DYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYK 407 (896)
Q Consensus 328 ~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~ 407 (896)
+||++|||++++++|||.|+|+.|||.+.. ..+.|.++++||||++.-.+|||.+|+.|++.+++...-.....+
T Consensus 312 ~yl~ltGr~~~qv~lve~yak~~GlW~d~l--~~a~y~r~l~fdlssv~r~~aGPsnPh~r~~t~~l~a~G~~~~~~--- 386 (864)
T TIGR02333 312 DYLKLTGREEEQVKLVETYAKAAGLWADSL--KQAVYERVLEFDLSSVVRNLAGPSNPHARLATSDLAAKGIAKEVE--- 386 (864)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHH--CCHHHHHHEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHCCHHHH---
T ss_conf 777523885688888877765402105544--000000110110222221016888731123223444310102345---
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCC
Q ss_conf 10023210245788888755544575310467654599987788999889864987586730797016189999999858
Q gi|254780451|r 408 KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAG 487 (896)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~G 487 (896)
.......+..+.||+|.||+||||||||||...+||+||||+|..+||+.+||||++++|||+++.-||+++|
T Consensus 387 -------~~~~~~~~G~mPdG~viiaaitsCtntsnPrnv~aa~lla~~an~~Gl~r~PWvk~s~aPGsk~~~lyl~ea~ 459 (864)
T TIGR02333 387 -------EREAQEAEGLMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANKLGLKRKPWVKSSLAPGSKVVKLYLEEAG 459 (864)
T ss_pred -------HHHHCCCCCCCCCCCEEEEEEHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHH
T ss_conf -------5320033677886403333202202567606889999998888753774277200025762355566566520
Q ss_pred CHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC
Q ss_conf 85777750530205532242127776883022101136635878633676666546854331000597899999851612
Q gi|254780451|r 488 LVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 (896)
Q Consensus 488 ll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I 567 (896)
|+..|+++||-|++|.|++|-||||.|+|.|.+.|-+.+|..++|+||||||.||+||..++.||||||||+||||+|+|
T Consensus 460 l~~ele~lGfGiv~faCttCnGmsGaldP~iq~e~i~rdlyatavlsGnrnfdGrihPyakqaflasPPlvvaya~aG~~ 539 (864)
T TIGR02333 460 LLKELEQLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTI 539 (864)
T ss_pred HHHHHHHCCCEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 46788751650010112102555321253788987643444322100463567631502443432276266565553211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22310023554888863200156888578888876415832100012233478712201557877620567433342378
Q gi|254780451|r 568 RKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP 647 (896)
Q Consensus 568 ~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~p 647 (896)
.||+.+|-||.|.+|++|+|++|||+++||+.++...++|+.|++.|...|+-+.. .....+++|+|.|.|||||+|
T Consensus 540 rfdie~d~lG~d~~Gk~~~l~~~WP~d~eidavv~~~vkP~qf~~~y~~mf~~~~~---~~~~~~PlydWrP~styirrP 616 (864)
T TIGR02333 540 RFDIEKDVLGVDADGKEIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLEVD---AQKKVSPLYDWRPMSTYIRRP 616 (864)
T ss_pred EEEHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCCCCCEECCC
T ss_conf 01001000152568865787303887246899998520846899999998853333---033457630247764110178
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 87677654554332435855899965885723316456555447378889874988656314565302357776652036
Q gi|254780451|r 648 PYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSN 727 (896)
Q Consensus 648 Pff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaN 727 (896)
|||++. ......++++|+|++|+|||||||+||+.+|-.+|.||+||...|++++|||||.++||.|-...|.||+|
T Consensus 617 PyWeGa---la~~rtl~~mrPla~l~dnittdhlsPsnai~~~saaGeyl~kmG~PeedfnsyathrGdhltaqratfan 693 (864)
T TIGR02333 617 PYWEGA---LAGERTLKGMRPLAVLGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFAN 693 (864)
T ss_pred CCCCCC---CCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 863320---00134553136411205532213367125777644322578764897112111231144301232333215
Q ss_pred CHHHHHHCCCC-C--CCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCH
Q ss_conf 01223212577-7--65772245389978737999998998199889994677786730799988667617089997647
Q gi|254780451|r 728 IRICNYMLGEE-G--KKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESF 804 (896)
Q Consensus 728 irl~N~l~~~~-~--~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SF 804 (896)
++|.|+|+..+ | ++|++.+..|+|+.+.+|||-+.|.++++|||||||.+||+||||||||||.||-||.|++||.|
T Consensus 694 Pkl~nem~~~~~G~~~qGslar~ePeG~~~rmWeaietym~rkqPli~~aGadyGqGssrdWaakGvrlaGveaivaeGf 773 (864)
T TIGR02333 694 PKLFNEMVKNDDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGF 773 (864)
T ss_pred CHHHHHHHHCCCCCEEECCEEEECCCCCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHCCCEEEHHHHHHHHHH
T ss_conf 13566666305883220511455578631046889999870589679994265688764025544602000343334102
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHC
Q ss_conf 89888505355232233178989888198974389972632258997389999818996799999987389999999990
Q gi|254780451|r 805 ERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKN 884 (896)
Q Consensus 805 eRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~ 884 (896)
|||||+||||||||||+|+.+.+..+++|+|+|.||+.| ...|+.++++.+++.+|+..++.++|++||..|+..|.+
T Consensus 774 erihrtnlvGmGvlPl~fk~~~~r~~~~ldG~e~~dv~G--~~~P~~~l~~v~~r~nGe~~~v~vtC~ldta~ev~~y~a 851 (864)
T TIGR02333 774 ERIHRTNLVGMGVLPLEFKPGTNRKTLGLDGTEVFDVVG--EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEA 851 (864)
T ss_pred HHHHHHHEEECCEEECCCCCCCCCCEEECCCCHHHHHHC--CCCCCCEEEEEEEECCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf 344322111100000012477663001116402223320--557875079999825887776566875226330355403
Q ss_pred CCHHHHHHHH
Q ss_conf 9836898887
Q gi|254780451|r 885 GGILQAVLRQ 894 (896)
Q Consensus 885 GGiL~yvlr~ 894 (896)
||+|+-..+.
T Consensus 852 GGvlqrfaqd 861 (864)
T TIGR02333 852 GGVLQRFAQD 861 (864)
T ss_pred CCHHHHHHHH
T ss_conf 5257888887
No 8
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=0 Score=1568.74 Aligned_cols=645 Identities=31% Similarity=0.497 Sum_probs=565.1
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH
Q ss_conf 66579999999861235545777663645325220000035799999999999997199999928789813998683211
Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896)
+.+++|+++..|+.. .+..++.||.|+|+||+|||+||+||++||++| |.++-++ |.+ + .+|||+++.
T Consensus 2 ~~Tl~eKIl~~h~~~--~~v~~G~~i~~~~d~v~~~D~Tg~~a~~~~~a~-------G~~~~~~-~~~-v-~~~DH~~~~ 69 (648)
T PRK07229 2 PLNLTEKILYAHLVE--GELEPGEEIAIRIDQTLTQDATGTMAYLQFEAM-------GLDRVKT-ELS-V-QYVDHNLLQ 69 (648)
T ss_pred CCCHHHHHHHHHCCC--CCCCCCCEEEEECCEEEEECCCCHHHHHHHHHC-------CCCCCCC-CCE-E-EEECCCCCC
T ss_conf 966899999973488--876799879998358998747659999999985-------9997899-884-7-883899876
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEE-EEEEECC
Q ss_conf 005998899989998875426789999877421488078608876216778986335113103688617983-0132068
Q gi|254780451|r 137 DYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVGTD 215 (896)
Q Consensus 137 d~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~P-dtlVGtD 215 (896)
. ..||.|||+||||++++| |++++|||+|||||||+|+ +++| +++||||
T Consensus 70 ~---------------~~~n~e~~~~l~~~~~~~-gi~~~~pg~GI~Hqv~~E~--------------~a~PG~~ivGtD 119 (648)
T PRK07229 70 A---------------DFENADDHRFLQSVAAKY-GIYFSKPGNGICHQVHLER--------------FAVPGKTLLGSD 119 (648)
T ss_pred C---------------CHHHHHHHHHHHHHHHHC-CCEEECCCCCEEEEECHHH--------------CCCCCCEEEECC
T ss_conf 7---------------613189999999999981-9768789983351672210--------------457985698367
Q ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCC
Q ss_conf 87644452012320343489999970775141167289999976778644368899999998410221212799961550
Q gi|254780451|r 216 SHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295 (896)
Q Consensus 216 SHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi 295 (896)
|||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++|||+|||||+|++.|+.+|++||+|||+|||+
T Consensus 120 SHT~~~galG~la~GvG~~e~~~~m~~~~~~~~vPevv~v~l~G~l~~gvtakDviL~i~~~l~~~G~~~k~vEf~G~gv 199 (648)
T PRK07229 120 SHTPTAGGLGMLAIGAGGLDVALAMAGGPYELKMPKVVGVKLTGKLPPWVSAKDVILEVLRRLTVKGGVGKIFEYFGPGV 199 (648)
T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 77666662312687057999999971877999788589999971079998889999999998375776656999967740
Q ss_pred CCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 01787563212000100372037751998999999863999889999998746410236767667886306999980314
Q gi|254780451|r 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNV 375 (896)
Q Consensus 296 ~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~i 375 (896)
++||+++|||||||++||||||||||+|++|++||+.|||++++. ...+|++|.|+++++||||+|
T Consensus 200 ~~Ls~~~R~Ti~NM~~E~GA~~g~fp~D~~t~~yl~~~gR~~~~~--------------~l~~D~~a~Y~~~i~iDls~v 265 (648)
T PRK07229 200 ASLSVTERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWV--------------ELAADPDAEYDEVIEIDLSEL 265 (648)
T ss_pred CCCCHHHHHHHHHCCHHHCCEEEEECCCHHHHHHHHHCCCCHHCC--------------CCCCCCCCCEEEEEEEEHHHC
T ss_conf 338888876676412632651678678743899998729812111--------------034799996148999984323
Q ss_pred CCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 30122656656413677730116687664001100232102457888887555445753104676545999877889998
Q gi|254780451|r 376 SPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLAR 455 (896)
Q Consensus 376 eP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAk 455 (896)
+|+||||++|||++++++++. .+|.+|+|||||||||+++|+||++|
T Consensus 266 ~P~va~P~~P~~~~~v~e~~~-------------------------------~~id~a~IgSCTN~~~~dl~~aA~il-- 312 (648)
T PRK07229 266 EPLIAGPHSPDNVVPVSEVAG-------------------------------IKVDQVLIGSCTNSSYEDLMRAASIL-- 312 (648)
T ss_pred CEEEECCCCCCCCEEHHHHCC-------------------------------CEEEEEEEECCCCCCHHHHHHHHHHH--
T ss_conf 045416999554238899379-------------------------------61459999457899839999999987--
Q ss_pred HHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECC
Q ss_conf 89864987586730797016189999999858857777505302055322421277768830221011366358786336
Q gi|254780451|r 456 NAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSG 535 (896)
Q Consensus 456 kAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~Sg 535 (896)
+|++|+||||++++|||++|++||+++||+++|+++||.+++||||+||||++... +++ ++|+|+
T Consensus 313 ----kg~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~v~~~gC~~CiG~~~~~~--------~~~---~~v~s~ 377 (648)
T PRK07229 313 ----KGKTVHPKVSFVINPGSRQVLEMLARDGALADLIAAGARILENACGPCIGMGQAPA--------TGN---VSLRTF 377 (648)
T ss_pred ----HCCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHHCCEEEECCCCCCCCCCCCCCC--------CCC---EEEECC
T ss_conf ----41687888149985785999999998785666886896993871420107299898--------883---688515
Q ss_pred CCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 76666546854331000597899999851612223100235548888632001568885788888764158321000122
Q gi|254780451|r 536 NRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYS 615 (896)
Q Consensus 536 NRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~ 615 (896)
||||+||||+..+.+|||||++|+||||+|+| +||.+++..+.+.+.+..||+..++++ .
T Consensus 378 NRNF~gR~g~~~~~~yLaSP~~vaA~AiaG~i-----tdp~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 437 (648)
T PRK07229 378 NRNFPGRSGTKNAHVYLASPETAAASALTGVI-----TDPRDLDELPNMDGPKVKLPEPFLVDD---------------A 437 (648)
T ss_pred CCCCCCCCCCCCCCEEECCHHHHHHHHHCCEE-----CCCCCCCCCCCCCCCCCCCCCCCCCCC---------------C
T ss_conf 54457776886664487588999998726623-----376123444567776534776532251---------------0
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHH
Q ss_conf 33478712201557877620567433342378876776545543324358558999658857233164565554473788
Q gi|254780451|r 616 DVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAAS 695 (896)
Q Consensus 616 ~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~ 695 (896)
.+..+.+.|..++.+.++ +|+++|+|+. ..++.++|||+++|||||||||||||+ +
T Consensus 438 ~~~~~~~~~~~~~~~~~p---------~i~~~p~~~p-------~~~~~~~~vl~~lgD~vTTDhIsPAG~--------~ 493 (648)
T PRK07229 438 MIIAPAEDGSGVEVIRGP---------NIKPLPLLDP-------LPDSLEGKVLIKVGDNITTDHIMPAGA--------K 493 (648)
T ss_pred CEECCCCCCCCEEEECCC---------CCCCCCCCCC-------CCCCCCCEEEEECCCCCCHHCCCCCCC--------C
T ss_conf 021577665632675489---------8777665677-------654446668986079987312887987--------4
Q ss_pred HHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECC
Q ss_conf 89874988656314565302357776652036012232125777657722453899787379999989981998899946
Q gi|254780451|r 696 YLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAG 775 (896)
Q Consensus 696 yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG 775 (896)
|| ++|||||+|.|+||+|+. | .++++|++|+ |+|||||
T Consensus 494 ~l--------------~~Rgn~~~i~~~~~~~~~--~----------------------~f~~~a~~~~----~~iivaG 531 (648)
T PRK07229 494 WL--------------PYRSNIPNISEFVFEGVD--N----------------------TFPERAKEYK----GGIIVGG 531 (648)
T ss_pred CC--------------CCCCCHHHHHHHHHCCCC--C----------------------HHHHHHHHCC----CCEEEEC
T ss_conf 33--------------556868999766524677--0----------------------6999998609----9799976
Q ss_pred CCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEE
Q ss_conf 77786730799988667617089997647898885053552322331789898881989743899726322589973899
Q gi|254780451|r 776 VEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTL 855 (896)
Q Consensus 776 ~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v 855 (896)
+|||+|||||||||+|+||||||||||||||||||||||||||||||.+++||++|++ +|+++|.++.++.|++++++
T Consensus 532 ~~YG~GSSRd~AAk~~~lLGvkAVIA~SFeRIhrsNLv~mGvLPL~f~~~~~~~~l~~--~d~~~i~~~~~~~~~~~~~v 609 (648)
T PRK07229 532 ENYGQGSSREHAALAPRYLGVKAVIAKSFARIHKANLINFGILPLTFADEADYDKIEE--GDELEIEDLREFLEGGPLTV 609 (648)
T ss_pred CCCCCCCHHHHHHHCHHHCCEEEEEEEEHHHHHHHHCCCCCEEEEEECCCCCHHHCCC--CCEEEECCHHHCCCCCCEEE
T ss_conf 7678886299998578873868999824688997537424345368779668877599--98899728244288995599
Q ss_pred EEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHHHC
Q ss_conf 99818996799999987389999999990983689888729
Q gi|254780451|r 856 EIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 (896)
Q Consensus 856 ~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~la 896 (896)
++++.+|. +|++.+++ |+.|++||+||||||||+||+.
T Consensus 610 ~~~~~~g~--~~~~~~~~-t~~E~ey~~~GGiL~yv~rk~~ 647 (648)
T PRK07229 610 VLNHGKGE--EIEVRHTL-SERQIEILLAGGALNLIKEKQK 647 (648)
T ss_pred EEECCCCC--EEEEEEEC-CHHHHHHHHHCCHHHHHHHHHC
T ss_conf 99928994--89998618-9999999985889999999753
No 9
>PRK11413 hypothetical protein; Provisional
Probab=100.00 E-value=0 Score=1507.45 Aligned_cols=708 Identities=20% Similarity=0.253 Sum_probs=593.3
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHH
Q ss_conf 65799999998612355457776636453252200000357999999999999971999999287898139986832110
Q gi|254780451|r 58 CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVD 137 (896)
Q Consensus 58 ~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd 137 (896)
.+++-.++++|..+.+ ..++..+||||.|||+|.||+++||.|. |. |+. .||..|++||..+..
T Consensus 35 ~t~~~~il~~h~~~~~-----~~~l~l~~d~~~~~d~t~~~~~~~~~as-------g~-~~~---~vp~~~~~~h~~~~~ 98 (751)
T PRK11413 35 GTIAWSILSSHNTSGN-----MDKLKIKFDSLASHDITFVGIVQTAKAS-------GM-ERF---PLPYVLTNCHNSLCA 98 (751)
T ss_pred CCCHHHHHHHHCCCCC-----HHHCCCCCCCHHCCHHHHHHHHHHHHHC-------CC-CCC---CCCEEEECCCHHHHH
T ss_conf 7542999997366898-----4530005530012136899999999986-------99-867---675566335116776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCC
Q ss_conf 059988999899988754267899998774214880786088762167789863351131036886179830-1320688
Q gi|254780451|r 138 YSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDS 216 (896)
Q Consensus 138 ~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDS 216 (896)
..|+ -|+|.|.||.++.++| |+.|||||+||||||+|| +||+|| ++|||||
T Consensus 99 vgg~-------------iN~ddh~Fl~saa~Ky-G~~f~~Pg~gIiHQ~~lE--------------~~a~pG~~~iGTDS 150 (751)
T PRK11413 99 VGGT-------------INGDDHVFGLSAAQRY-GGIFVPPHIAVIHQYMRE--------------MMAGGGKMILGSDS 150 (751)
T ss_pred HCCC-------------CCHHHHHHHHHHHHHH-CCEECCCCCCEECHHHHH--------------HCCCCCCEEEECCC
T ss_conf 3785-------------6778899999999972-917618998223098786--------------12589976886165
Q ss_pred CCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC-CEEEEEEECCC
Q ss_conf 76444520123203434899999707751411672899999767786443688999999984102212-12799961550
Q gi|254780451|r 217 HTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVV-SKFVEFFGSGF 295 (896)
Q Consensus 217 HT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvv-gk~vEf~G~gi 295 (896)
||+ +||||+|||||||+||+++|+||||+|++||||||+|+|+|++|||||||||+|+++||++|+| ||||||||||+
T Consensus 151 HT~-~ggLG~la~GVGG~Ea~~aMlG~P~~l~~P~VIGV~LtG~L~~gvtakDviL~i~~~L~~kG~v~gkiVEf~GpGv 229 (751)
T PRK11413 151 HTR-YGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGV 229 (751)
T ss_pred CCC-CCCHHHEEECCCHHHHHHHHCCCEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHEECCCEEEEEEEEECCCC
T ss_conf 657-7663342781669999999869835720797899999711798977899999999997005715107999978661
Q ss_pred CCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 01787563212000100372037751998999999863999889999998746410236767667886306999980314
Q gi|254780451|r 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNV 375 (896)
Q Consensus 296 ~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~i 375 (896)
++||++||+|||||+|||||||||||+|++|++||++|||+++++++ .+++++.||+++|||||+|
T Consensus 230 ~~LS~~dRaTI~NM~~E~GATtsiFP~De~t~~YL~~tgR~e~~~~L--------------~~d~~a~Yd~vieiDLS~l 295 (751)
T PRK11413 230 AALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQL--------------NPQPMAYYDGCISVDLSAI 295 (751)
T ss_pred CCCCCCCCCCCCCCCHHHCCEEEEECCCHHHHHHHHHCCCHHHHHHH--------------CCCCCCCCCCEEEEECCCC
T ss_conf 22670333311012274584677515688999999870983777750--------------4688774240799984661
Q ss_pred CCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEE--EEEECCCCCCCHHHHHHHHHH
Q ss_conf 301226566564136777301166876640011002321024578888875554457--531046765459998778899
Q gi|254780451|r 376 SPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAI--ASITSCTNTFNPSVMIGAGLL 453 (896)
Q Consensus 376 eP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvI--AaIgSCTNtSnp~~miaAgll 453 (896)
||+||||++|||++++++++.+|...+.+...+...............++.+|++.| |+||||||||||++|+||++|
T Consensus 296 eP~IAGP~~P~~~~~i~el~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~IgSCTNsSy~d~~~aA~il 375 (751)
T PRK11413 296 KPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANAL 375 (751)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 35245898813221868766659887665432001245665432334334488840315899605789837699999997
Q ss_pred HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEE
Q ss_conf 98898649875867307970161899999998588577775053020553224212777688302210113663587863
Q gi|254780451|r 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVL 533 (896)
Q Consensus 454 AkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~ 533 (896)
++|++. +++|+++++|||++|++||+++|++++|+++||++++||||||||+ |+.+. .++ .||+
T Consensus 376 ~~k~v~-----~~~v~~sv~PGS~~V~~~L~r~Gll~~L~~~G~~v~~~gCgpCIG~-gd~p~-------~~~---~sv~ 439 (751)
T PRK11413 376 RGQSCG-----NDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGA-GDTPI-------NNG---LSIR 439 (751)
T ss_pred HCCCCC-----CCCCCEEECCCHHHHHHHHHHCCCHHHHHHCCCEEECCCCCCCCCC-CCCCC-------CCC---CEEE
T ss_conf 154356-----8840248818879999999987888999974988915767355388-88788-------885---1576
Q ss_pred CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC-
Q ss_conf 3676666546854331000597899999851612223100235548888632001568885788888764158321000-
Q gi|254780451|r 534 SGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKK- 612 (896)
Q Consensus 534 SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~- 612 (896)
|+||||+||+||..+++|||||+||+||||||++..+-.. .+....|+||+.+|+. .++..|.+
T Consensus 440 s~NRNF~gR~~~~~~~~~laSp~Lv~A~aiAgt~~~~g~l---------~~~~~~d~~~~~~e~~------~~~~~~~~~ 504 (751)
T PRK11413 440 HTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYL---------TSASELDCWDNVPEYA------FDVTPYKNR 504 (751)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCHHCCHHHHHEECCCCCCC---------CCCCCCCCCCCCCCEE------CCCCCCCCC
T ss_conf 4055888878996543554681433588763330037767---------9853357899865440------267622142
Q ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CHHHCCCCCCCCCCC
Q ss_conf 1223347871220155787762056743334237887677654554332435855899965885-723316456555447
Q gi|254780451|r 613 KYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKI-TTDHISPAGSIPLQS 691 (896)
Q Consensus 613 ~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~i-TTDHISPAG~I~~~s 691 (896)
.|..+.++++.|+.+..|. .++|++ .++...++ .++++++++|+| |||||||||.|.+..
T Consensus 505 ~~~~~~~~~~~~~~~~~P~--i~~wp~----------------~~~l~~~i-~~kv~~ki~d~v~TTDHIsPAG~~~~~r 565 (751)
T PRK11413 505 VYQGFVKGATQQPLIYGPN--IKDWPE----------------LGALTDNI-VLKVCSKILDEVTTTDELIPSGETSSYR 565 (751)
T ss_pred CCCCCCCCCCCCEEECCCC--CCCCCC----------------CCCCCCCH-HHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 3335668864443643898--888877----------------78776303-3433324159865656768998532356
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEE
Q ss_conf 37888987498865631456530235777665203601223212577765772245389978737999998998199889
Q gi|254780451|r 692 AAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLV 771 (896)
Q Consensus 692 pAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plV 771 (896)
....+|.+.++.++|||+||+||+||+++.+..+.+.. +....+++. ..+..++ ++.|++.+++++
T Consensus 566 ~~~~~lse~~~~r~d~~~~g~~~~~~~~~~~~~~g~~~---------~~~~~~~~~----~~~~~~~-~~~~~~~~ig~v 631 (751)
T PRK11413 566 SNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVS---------ELTEVFARI----KQIAGQE-HIDPLQTEIGSM 631 (751)
T ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC---------CCCCCCCCC----CCCCCHH-HHHHHHCCCCEE
T ss_conf 78657865463656743676522057765541257645---------546655435----5554133-434554266449
Q ss_pred EECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHH-HHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHH--CC
Q ss_conf 9946777867307999886676170899976478-98885053552322331789898881989743899726322--58
Q gi|254780451|r 772 VFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFE-RIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKT--IS 848 (896)
Q Consensus 772 ViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFe-RIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~--l~ 848 (896)
|+|+ +||+|||||||||+||||||||||||||| |||||||||||||||||.++.||+. .|.++|.++.+ ..
T Consensus 632 v~a~-k~G~GSSRE~AA~~prlLGvkAVIAkSFa~RIHrSNLi~~GvLPL~F~~~~dy~~-----~D~i~i~gl~~~~~~ 705 (751)
T PRK11413 632 VYAV-KPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEV-----GDYIYIPGIKAALDN 705 (751)
T ss_pred EEEC-CCCCCCHHHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCCC-----CCEEEECCHHHHHHC
T ss_conf 9967-7898603999996467434799998120899998736522527578868766889-----987985681235428
Q ss_pred CCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHH
Q ss_conf 9973899998189967999999873899999999909836898887
Q gi|254780451|r 849 PRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQ 894 (896)
Q Consensus 849 p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~ 894 (896)
|++++++.+++.||+.++|++++|++|+.|++||+|||+|||+.++
T Consensus 706 ~~~~v~~~i~~~dG~~~ei~l~~~~~t~~E~e~~~aGg~Lny~r~k 751 (751)
T PRK11413 706 PGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNR 751 (751)
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHCCHHHCCCCC
T ss_conf 9986899999689968999998348999999999851886600359
No 10
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial; InterPro: IPR006248 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents mitochondrial aconitase (mAcn), as well as close homologues such as certain bacterial aconitase A (AcnA) enzymes. More information about these proteins can be found at Protein of the Month: Aconitase .; GO: 0003994 aconitate hydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0006099 tricarboxylic acid cycle.
Probab=100.00 E-value=0 Score=1474.67 Aligned_cols=717 Identities=29% Similarity=0.441 Sum_probs=611.5
Q ss_pred CCCCCCHHHHHHHHHCCCCCCC----C------CCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCC
Q ss_conf 8665799999998612355457----7------76636453252200000357999999999999971999999287898
Q gi|254780451|r 56 DGCTVTKEQIHAFVKWLDNKGT----V------ESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVP 125 (896)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~~~~----~------~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp 125 (896)
...+.+|+.+++||+..++.-. . ..-.-++||||.|||+|+||||+||++- ..-.+.||
T Consensus 18 ~pLTlaEKiLYSHLddp~~S~~S~d~~Gr~~RG~~yLkL~PDRVamQDA~AQMAlLQFm~~-----------gL~~~~~P 86 (761)
T TIGR01340 18 RPLTLAEKILYSHLDDPEESLLSQDISGRDVRGKSYLKLRPDRVAMQDASAQMALLQFMTA-----------GLPQVAVP 86 (761)
T ss_pred CCCHHHHHHHHHCCCCHHHCEEECCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC-----------CCCCCCCC
T ss_conf 9722555556420467202303024565322145454448860001036789999999865-----------88887646
Q ss_pred EEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEE
Q ss_conf 13998683211005998899989998875426789999877421488078608876216778986335113103688617
Q gi|254780451|r 126 VDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENI 205 (896)
Q Consensus 126 ~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~ 205 (896)
+.+|||| +++-..|.+..|.+-.+ -|+|+|.||.+|.++| |+.||+||+||+||+.|| ||
T Consensus 87 a~iHCDH-LI~~~~G~~kDL~~~~~----~N~EVfDFL~s~~~kY-gi~FW~PGsGIIHQivLE--------------Ny 146 (761)
T TIGR01340 87 ASIHCDH-LIVGQKGGEKDLARAIA----TNKEVFDFLESAAKKY-GIGFWKPGSGIIHQIVLE--------------NY 146 (761)
T ss_pred CCCCCCC-EEECCCCCCHHHHHHHH----HHHHHHHHHHHHHHHC-CCCCCCCCCCEEEHHHHH--------------HC
T ss_conf 5012451-05547786034788886----4015778899766541-886468888404132123--------------10
Q ss_pred EEEE-EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 9830-132068876444520123203434899999707751411672899999767786443688999999984102212
Q gi|254780451|r 206 AYPD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVV 284 (896)
Q Consensus 206 a~Pd-tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvv 284 (896)
|+|| +|+|||||||++||||++++||||.||+.||+|.||.||.|+|+||+|||||+.|+|+|||||+|+++|+++|++
T Consensus 147 a~PGllMlGTDSHtPNaGGL~~~~IGVGGADAVd~l~g~PWELKaPKilGV~LTGkl~gW~~pKDvIlklag~LTV~GGT 226 (761)
T TIGR01340 147 AFPGLLMLGTDSHTPNAGGLGAIAIGVGGADAVDALAGLPWELKAPKILGVKLTGKLNGWTSPKDVILKLAGLLTVRGGT 226 (761)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHEECCCCHHHHHHHCCCCHHHCCCCEEEEEEEEEECCCCCHHHHHHHHCCCEEECCCC
T ss_conf 24641000456788862213312002673558899718873143880565554101368776224552120411510785
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCH--HHHHHHHHHHHHHHC--CCCCCCCC
Q ss_conf 12799961550017875632120001003720377519989999998639998--899999987464102--36767667
Q gi|254780451|r 285 SKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSN--SRVDLVEAYTKVQGM--WREDIDYE 360 (896)
Q Consensus 285 gk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~--~~v~lve~Y~ka~~l--~~~~~~d~ 360 (896)
|++|||||+||++||+.+.+|||||++|.|||+++||+.|...+||++|+|.. +...-.|.|.|-.+. +.-..+|+
T Consensus 227 G~IvEYfG~Gv~slSCtGm~TiCNMGAEIGATTS~FPf~~~~~~YLkaT~R~~~~~~A~nfenftkG~~~~~~~~~~aD~ 306 (761)
T TIGR01340 227 GYIVEYFGPGVESLSCTGMATICNMGAEIGATTSLFPFNEAMKRYLKATNRAEIAEEAKNFENFTKGVAKYKFELLKADK 306 (761)
T ss_pred CEEEEEECCCCCCEECCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 40898855884741226621232144302000367865578899862217557889988766664223467899875046
Q ss_pred CCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 88630699998031430122656656413677730116687664001100232102457888887555445753104676
Q gi|254780451|r 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTN 440 (896)
Q Consensus 361 ~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTN 440 (896)
+|+||++||||||+|||||.||++||..+|+|+.++... .+.+|. +|....||||||
T Consensus 307 ~a~YD~lIEI~Ls~lEPHvNGPFTPDLs~PiS~~~e~~~-------------~~~wP~----------~~~~GLIGSCTN 363 (761)
T TIGR01340 307 GAEYDELIEIDLSKLEPHVNGPFTPDLSTPISKFKEKVK-------------KNGWPE----------KLSAGLIGSCTN 363 (761)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHCCCC----------EEEEEEEECCCC
T ss_conf 888652675111227887687887221432678876565-------------517952----------254423541356
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 54599987788999889864987586730797016189999999858857777505302055322421277768830221
Q gi|254780451|r 441 TFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISE 520 (896)
Q Consensus 441 tSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~ 520 (896)
|| |+||-++..++|+|...|+|.+ +.+.|+|||+|++..|||+|.++.|++.|..|++++||||||+ |+++..
T Consensus 364 SS-YeDM~R~~si~k~A~~~G~K~~--~~F~vTPGSEqIRATlERDg~~~~f~~~Gg~vLaNACGPCIGQ---W~R~D~- 436 (761)
T TIGR01340 364 SS-YEDMSRCASIVKDAEKAGLKPK--IPFFVTPGSEQIRATLERDGILQTFEKFGGVVLANACGPCIGQ---WDRKDV- 436 (761)
T ss_pred CC-HHHHHHHHHHHHHHHHCCCCCC--CCCEECCCCCCCEEEEEECCHHHHHHHCCCEEEECCCCCCCCC---CCCCCC-
T ss_conf 66-3145789999999994889755--6732468862100011117668998646878973466888776---553146-
Q ss_pred HCCCCCEEEEEEECCCCCCCCCC--CCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 01136635878633676666546--8543310005978999998516122231002355488886320015688857888
Q gi|254780451|r 521 VIHQKSLVVAGVLSGNRNFEGRI--SPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQ 598 (896)
Q Consensus 521 ~i~~~~l~~~sV~SgNRNFeGR~--~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~ 598 (896)
.+.+++-. +-++|+||||.||. ++.+ ++||+||++|+|+++||+..|||+||.| +++|||+++|+- |+.+|..
T Consensus 437 s~~kg~~N-~I~tSyNRNF~gRND~N~~T-~~Fl~SPelVtAm~~aG~~~FNPlTD~~-~~~dGK~FKl~a--P~GdelP 511 (761)
T TIGR01340 437 SVKKGEPN-TILTSYNRNFRGRNDGNPAT-MNFLASPELVTAMSYAGSLKFNPLTDSL-KTPDGKEFKLKA--PKGDELP 511 (761)
T ss_pred CCCCCCCC-CEEEECCCCCCCCCCCCHHH-HCCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCC--CCCCCCC
T ss_conf 32578975-14740366766647467323-1001567898898760657457653200-188885004683--5788878
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 887641583210001223347871220155787762056743334237-8876776545543324358558999658857
Q gi|254780451|r 599 SFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRN-PPYFETISKHIPEIVDICGARILCLLGDKIT 677 (896)
Q Consensus 599 ~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~-pPff~~~~~~~~~~~~i~~arvL~~lGD~iT 677 (896)
+-- .+.=++.|..-.. +.--.++++ .-+|+|+.+|. -|| ++.+.+|+.+.+||+|+.++||
T Consensus 512 ~~G-----F~~Gr~~f~~~~~-~kP~~nv~v------av~P~S~RLqLLePF------~~w~g~dl~g~~vL~Kv~GKcT 573 (761)
T TIGR01340 512 EKG-----FEAGRDTFQAPPD-SKPDENVEV------AVDPKSDRLQLLEPF------EPWNGKDLKGLRVLIKVEGKCT 573 (761)
T ss_pred CCC-----CCCCCCCEECCCC-CCCCCCCEE------EECCCCCHHHHCCCC------CCCCCCCCCCCEEEEEECCCCC
T ss_conf 887-----6246651315867-888885337------867885278651777------7788863237757898414237
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCE---EECCCCCEE
Q ss_conf 23316456555447378889874988656314565302357776652036012232125777657722---453899787
Q gi|254780451|r 678 TDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYT---IHYPSKEEL 754 (896)
Q Consensus 678 TDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T---~~~p~~~~~ 754 (896)
|||||-|| +||+||||++++.| |.|++|.+.|.|.. .+.-+|+..
T Consensus 574 TDhISaAG---------pWLKYkGHL~NIS~-----------------------N~LigA~N~e~gE~N~~~~~~~G~~~ 621 (761)
T TIGR01340 574 TDHISAAG---------PWLKYKGHLDNISN-----------------------NTLIGAVNAETGEVNKAYDLFDGSKG 621 (761)
T ss_pred CCCCCCCC---------CCCCCCCCCHHHHH-----------------------HHHHHHCCHHCCCCHHHHHCCCCCCC
T ss_conf 46301367---------62123678312222-----------------------33543013000640101102688634
Q ss_pred EHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCC
Q ss_conf 37999998998199889994677786730799988667617089997647898885053552322331789898881989
Q gi|254780451|r 755 FIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIK 834 (896)
Q Consensus 755 ~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~ 834 (896)
.|++.||+||++|+||||||.+|||+||||||||+.||+||.+++|.|||||||++||++||||||||.+++|||+ |+
T Consensus 622 ~iP~~a~~yK~~g~~W~vva~~NYGEGSaREHAAL~PR~LGg~~i~~kSFARIHETNLKKQG~lPLTFAn~~DYDk--I~ 699 (761)
T TIGR01340 622 DIPELARDYKARGVKWVVVAEHNYGEGSAREHAALEPRHLGGRIIIVKSFARIHETNLKKQGVLPLTFANEADYDK--IQ 699 (761)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCCCCCCCCCCCC--CC
T ss_conf 6137999997579846998016578765355640586100745777601001221112104766533577233454--48
Q ss_pred CCEEEEEECHHHCCC-----CCEEEEEEEECC-CCEEEEEEEEEECCHHHHHHHHCCCHHHHH
Q ss_conf 743899726322589-----973899998189-967999999873899999999909836898
Q gi|254780451|r 835 GDEIINIRKLKTISP-----RQESTLEIHYSD-GTFKCVPIICCIDTLDEINHLKNGGILQAV 891 (896)
Q Consensus 835 G~E~~~i~~~~~l~p-----~~~v~v~i~~~~-g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv 891 (896)
..+.+++.++.+|.+ +++++++|++++ |++.++++.+.+ ++.|++||++|++||++
T Consensus 700 ~~d~~~~lnl~~l~~kd~~~g~~~~~~v~~k~tg~~~~iK~~Ht~-~~~Qi~ffkaGSAlN~~ 761 (761)
T TIGR01340 700 PGDEVELLNLVELLKKDNNNGGEVDLRVTKKNTGKVFEIKLKHTL-SKDQIGFFKAGSALNLL 761 (761)
T ss_pred CCCEEEEECHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCC-CHHHHHHHHHHHHHCCC
T ss_conf 876164200233454118898647899752899956887411255-76678998754664159
No 11
>KOG0453 consensus
Probab=100.00 E-value=0 Score=1242.44 Aligned_cols=708 Identities=30% Similarity=0.442 Sum_probs=593.7
Q ss_pred CCCCCHHHHHHHHHCCCCCC--CCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCC
Q ss_conf 66579999999861235545--7776636453252200000357999999999999971999999287898139986832
Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKG--TVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSL 134 (896)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~--~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv 134 (896)
..+++|++++.++.-.+... ....-+..+|+||+|||+|++||++||++. |. .|+ .+|+.+||||.+
T Consensus 58 p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~LqFms~-------Gl--~kv--avPstIhCdhli 126 (778)
T KOG0453 58 PLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQFMSS-------GL--KKV--AVPSTIHCDHLI 126 (778)
T ss_pred CCHHHHHHHHHHCCCCCCCCEECCCCEEEECCCCEECCCCHHHHHHHHHHHC-------CC--CCC--CCCCEEEECCEE
T ss_conf 7305688887622488655422255338876402023354144899999755-------86--424--477457732322
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEE
Q ss_conf 110059988999899988754267899998774214880786088762167789863351131036886179830-1320
Q gi|254780451|r 135 IVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVG 213 (896)
Q Consensus 135 ~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVG 213 (896)
+....|..| +++..+-|+|.|+||..+.++| |+.|||||+||+||++|| +||||+ ++||
T Consensus 127 ~a~~gg~~D-----l~~a~~~Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlE--------------nYAfPG~m~ig 186 (778)
T KOG0453 127 EAQVGGDKD-----LQRASDLNKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE--------------NYAFPGLMMIG 186 (778)
T ss_pred EECCCCCCH-----HHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCEEEEEEEE--------------CCCCCCCEEEE
T ss_conf 101377600-----3456554079999999888754-877658987601422310--------------03577525773
Q ss_pred CCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 68876444520123203434899999707751411672899999767786443688999999984102212127999615
Q gi|254780451|r 214 TDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGS 293 (896)
Q Consensus 214 tDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~ 293 (896)
|||||+++||||+|++||||.||+++|+++||.++.|+|+||+|+|+|+.|+++|||||++.+.|..+|++|++||||||
T Consensus 187 TDSHTpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~iiEy~G~ 266 (778)
T KOG0453 187 TDSHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGHIIEYFGP 266 (778)
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHCCCCCEECCCCEEEEEEEEECCCCCCHHHHHHHHHCEEEECCCCCEEEEEECC
T ss_conf 15778888863402104566109899638972213885677887611389887457787550525643766536788568
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 50017875632120001003720377519989999998639998899999987464102367676678863069999803
Q gi|254780451|r 294 GFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLG 373 (896)
Q Consensus 294 gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs 373 (896)
|+.+||++.|+|||||++|.|||+++||+|+.+++||+.|||.+ ..+..++|.++ -+.+|++|+||++||||||
T Consensus 267 Gv~slSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~-ia~~a~~~~~~-----~l~AD~~a~Ydk~ieIdLs 340 (778)
T KOG0453 267 GVNSLSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNE-IAREARETLDA-----ILAADKGAHYDKIIEIDLS 340 (778)
T ss_pred CCCEECCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CHHHHHHHHHH-----CCCCCCCCCCCEEEEEEHH
T ss_conf 64401224400101153301220565678789999999849531-02456776641-----0468888771028998764
Q ss_pred CCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 14301226566564136777301166876640011002321024578888875554457531046765459998778899
Q gi|254780451|r 374 NVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLL 453 (896)
Q Consensus 374 ~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgll 453 (896)
+|+|+|+||++|+-.-|++++.+... . ++.. .+|..++||||||+| +++|-.|+.+
T Consensus 341 tL~P~vnGPfTpdl~~pvskl~e~~~-------------k-----n~wp-----~~i~~gligSCTNSs-yeDm~raa~i 396 (778)
T KOG0453 341 TLEPHVNGPFTPDLSTPVSKLGENSE-------------K-----NGWP-----IKIKVGLIGSCTNSS-YEDMSRAADI 396 (778)
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHH-------------H-----CCCC-----EEEEEEEEEEECCCC-HHHHHHHHHH
T ss_conf 36645679998554673999867765-------------1-----3875-----056453798615855-7778889999
Q ss_pred HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEE
Q ss_conf 98898649875867307970161899999998588577775053020553224212777688302210113663587863
Q gi|254780451|r 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVL 533 (896)
Q Consensus 454 AkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~ 533 (896)
+|+|..+|+|.+ |.+.++|||.||+..++|+|.++.|+++|..+++++||||||+ |++. .+.+++.. +-|+
T Consensus 397 v~~a~~~glk~~--v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGq---w~r~---dvk~GE~n-tivt 467 (778)
T KOG0453 397 VKQAKGKGLKPK--VPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQ---WDRK---DIKKGEKN-TIVT 467 (778)
T ss_pred HHHHHHCCCCCC--CCEEECCCHHHHHHHHHHCCHHHHHHHCCCEECCCCCCCCCCC---CCCC---CCCCCCCC-CEEE
T ss_conf 999874577878--6157646738765567506628999864998866676772145---5510---04677767-5553
Q ss_pred CCCCCCCCCC--CCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 3676666546--85433100059789999985161222310023554888863200156888578888876415832100
Q gi|254780451|r 534 SGNRNFEGRI--SPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYK 611 (896)
Q Consensus 534 SgNRNFeGR~--~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~ 611 (896)
|+||||.||+ +|.+ .+||+||++|+|+||+|+++||+++|.| ++.+|+.|.|+- |..+|+.+
T Consensus 468 s~NRNFtgRnd~np~t-~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~lp~------------ 531 (778)
T KOG0453 468 SYNRNFTGRNDANPAT-HAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDELPK------------ 531 (778)
T ss_pred EECCCCCCCCCCCCCH-HHCCCCHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCCCCC--CCCCCCCC------------
T ss_conf 3245653567898311-0011688999999985336689754201-267754320147--75777750------------
Q ss_pred CCCCCCCCCCHHHCCCCCCCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCC
Q ss_conf 012233478712201557877-620567433342378-876776545543324358558999658857233164565554
Q gi|254780451|r 612 KKYSDVFKGDSSWWNIEVPES-ETYMWDEKSTYVRNP-PYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPL 689 (896)
Q Consensus 612 ~~y~~i~~g~~~w~~l~~~~~-~~y~w~~~StyI~~p-Pff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~ 689 (896)
+.|. .|...++..+.+.+ ...+-||.|..+|.- || .+...+|+++..||+++.++|||||||-||
T Consensus 532 ~g~d---~g~~ty~ap~~~~~~~~v~v~p~s~rlqlLepF------~~w~gkd~edl~ilikv~gkCttDhIsaaG---- 598 (778)
T KOG0453 532 KGFD---PGQDTYQAPPSSSSVVEVDVDPTSDRLQLLEPF------DKWDGKDLEDLKILIKVKGKCTTDHISAAG---- 598 (778)
T ss_pred CCCC---CCCCCCCCCCCCCCCCEEECCCCCCCHHHCCCC------CCCCCCCCCCCEEEEEEECCCCCCCCCCCC----
T ss_conf 1368---875652189987776123127863300113788------742455500053789993356765504678----
Q ss_pred CCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCC---EEECCCCCEEEHHHHHHHHHHC
Q ss_conf 4737888987498865631456530235777665203601223212577765772---2453899787379999989981
Q gi|254780451|r 690 QSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGY---TIHYPSKEELFIYDAAMRYKVD 766 (896)
Q Consensus 690 ~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~---T~~~p~~~~~~iydaA~~Y~~~ 766 (896)
+||+++||+++..| |.|+++.++|.+- ..++.++|.+++.+.|+.||+.
T Consensus 599 -----pwlkY~Ghl~nisn-----------------------n~~igain~En~e~n~~~n~~~ge~~~vp~~~~~yk~~ 650 (778)
T KOG0453 599 -----PWLKYRGHLENISN-----------------------NDLIGAINKENGEANCVKNYLTGEFGTVPDTARDYKKH 650 (778)
T ss_pred -----CCEECCCHHHHCCC-----------------------CHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHC
T ss_conf -----61343653540234-----------------------21320022655324433201455447768636667753
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHH
Q ss_conf 99889994677786730799988667617089997647898885053552322331789898881989743899726322
Q gi|254780451|r 767 QVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKT 846 (896)
Q Consensus 767 ~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~ 846 (896)
|++||+|+++|||+||||||||..||+||.+|||.+||+|||++||+++|+|||+|.++.||++| +-.+.+++.++..
T Consensus 651 g~~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi--~~~d~~~~~~L~~ 728 (778)
T KOG0453 651 GIRWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKI--RPADKVSIKGLTR 728 (778)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHCHHHCCCCEEEEEHHHHHHHHHHHHCCEEEEECCCHHHHHHC--CHHCCCCHHHHHH
T ss_conf 86069974554677850455430556429737985246778774054435213650697886434--8110446221454
Q ss_pred CCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 5899738999981899679999998738999999999098368988872
Q gi|254780451|r 847 ISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895 (896)
Q Consensus 847 l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~l 895 (896)
+.|+++++++|++.||+..++++. ++.+..|++|||+|+.||++ ++|
T Consensus 729 ~~~gkp~t~~vt~~dg~~~~~kl~-ht~n~~Qi~~fkaGsaln~~-~e~ 775 (778)
T KOG0453 729 RTPGKPLTVVVTKKDGKEVEIKLN-HTGNKLQIEWFKAGSALNVM-KEL 775 (778)
T ss_pred HCCCCCEEEEEECCCCCEEEEECC-CCCCHHHHHHHHCCHHHHHH-HHH
T ss_conf 268984269997799947888604-43334566764441477777-786
No 12
>TIGR01342 acon_putative aconitate hydratase, putative; InterPro: IPR006250 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents a small family of proteins homologous and likely functionally equivalent to aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterised. More information about these proteins can be found at Protein of the Month: Aconitase ..
Probab=100.00 E-value=0 Score=1252.94 Aligned_cols=642 Identities=31% Similarity=0.498 Sum_probs=539.8
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEE---EECC-C
Q ss_conf 57999999986123554577766364532522000003579999999999999719999992878981399---8683-2
Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHS-L 134 (896)
Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlv---iDHs-v 134 (896)
+++++++++|| ..++..++.||....|++|.||+||+|+.++|.|| +. |.|.++|. |||. +
T Consensus 1 T~~~KI~~~HL--V~G~l~PGEEI~I~IDQTL~QD~TGTM~yL~FEAl-------~~------~EV~TEL~~~Y~DH~~~ 65 (658)
T TIGR01342 1 TLAEKILDDHL--VEGDLEPGEEIAIKIDQTLSQDATGTMVYLEFEAL-------EV------DEVKTELAVSYIDHNTL 65 (658)
T ss_pred CCHHHEHHCCE--ECCCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEC-------CC------CHHHHEEEEEEECCCHH
T ss_conf 90232212001--21557887235357535225676530677764313-------78------50001000000012001
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEE
Q ss_conf 110059988999899988754267899998774214880786088762167789863351131036886179830-1320
Q gi|254780451|r 135 IVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVG 213 (896)
Q Consensus 135 ~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVG 213 (896)
|.|| ||.+.|+||+++.++| ++++..||||||||||+|+ ||.|| ||+|
T Consensus 66 Q~DF----------------~N~DDH~yL~S~A~~y-G~ylS~PGNGICH~VH~E~--------------FA~PGKTLLG 114 (658)
T TIGR01342 66 QFDF----------------KNADDHKYLRSVAKKY-GIYLSKPGNGICHNVHKER--------------FAKPGKTLLG 114 (658)
T ss_pred CCCC----------------CCCCHHHHHHHHHHHC-CEEEECCCCCCCCCCCCHH--------------CCCCCCCCCC
T ss_conf 0234----------------4452147999865215-7257468796322313020--------------1788772036
Q ss_pred CCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 68876444520123203434899999707751411672899999767786443688999999984102212127999615
Q gi|254780451|r 214 TDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGS 293 (896)
Q Consensus 214 tDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~ 293 (896)
+||||||.||||+||+|.||+|.+++|.|.|+|+++|+||+|+|.|+||+|||||||||.|+++|..+|++||++||+|+
T Consensus 115 SDSHTPT~GGlG~LAIGAGG~D~A~AM~G~~yY~~MP~~V~V~L~G~lPEW~TAKD~ILELLRRL~VKGG~GK~lEY~G~ 194 (658)
T TIGR01342 115 SDSHTPTAGGLGQLAIGAGGLDVAVAMAGEAYYLKMPKVVNVRLKGKLPEWVTAKDVILELLRRLSVKGGLGKVLEYFGE 194 (658)
T ss_pred CCCCCCCCCCCCHHHHCCCHHHHHHHHCCCCEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHEECCCCCEEEEECCC
T ss_conf 67788888653304122551687865078823742780887786155885201689999987650002675216752188
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 50017875632120001003720377519989999998639998899999987464102367676678863069999803
Q gi|254780451|r 294 GFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLG 373 (896)
Q Consensus 294 gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs 373 (896)
||++||+++|+||+||++|.|||++|||.|+.|.+||+..+|++++|+| .+|+||+|+++|+||||
T Consensus 195 GV~~LSVPER~TITNMG~ELGAT~SIFP~D~~T~~yL~~~~RE~~~V~L--------------~~D~DAEY~~~I~~~LS 260 (658)
T TIGR01342 195 GVKELSVPERATITNMGAELGATSSIFPSDDITRDYLAAFDREDDFVDL--------------LADADAEYDDVIVVDLS 260 (658)
T ss_pred CCCCCCCCCCCCHHHCCHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHC--------------CCCCCCCCCCEEEEECC
T ss_conf 7120368863220102421324444578716799999850770024422--------------78898753466788302
Q ss_pred CCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 14301226566564136777301166876640011002321024578888875554457531046765459998778899
Q gi|254780451|r 374 NVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLL 453 (896)
Q Consensus 374 ~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgll 453 (896)
+|||.||-|++|||+|||.|+.. ..++ ..-||||||+|+.+++-||.+|
T Consensus 261 ~LEPLIA~P~~PDNVVPVRE~~G-------------~~V~------------------QV~~GSCTN~~y~D~~~AAKlL 309 (658)
T TIGR01342 261 DLEPLIAEPSSPDNVVPVREVEG-------------IKVD------------------QVVVGSCTNSAYVDLLRAAKLL 309 (658)
T ss_pred CCCCCCCCCCCCCCCCCCEEECC-------------EEEE------------------EEEEEECCCCHHHHHHHHHHHH
T ss_conf 47852257663687111022057-------------0761------------------3888501462077788776651
Q ss_pred HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEE
Q ss_conf 98898649875867307970161899999998588577775053020553224212777688302210113663587863
Q gi|254780451|r 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVL 533 (896)
Q Consensus 454 AkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~ 533 (896)
-|++|++.|.+.++|||+|..+.|.+.|.+..|.+||+++....||+|||+ |..|+.- .+||.
T Consensus 310 ------EGR~V~~~~~~~VAPGSKQA~El~~~~G~~~~~l~AG~~~~E~~CG~CIG~-G~~P~~~----------~VS~R 372 (658)
T TIGR01342 310 ------EGRRVSKDVVFIVAPGSKQALELLAREGALLEFLKAGVRILEAACGACIGI-GFVPASD----------SVSLR 372 (658)
T ss_pred ------CCCEECCCEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCC----------CEEEE
T ss_conf ------486425752799758855789997504468999884045544227851034-3217998----------55641
Q ss_pred CCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCC
Q ss_conf 367666654685433100059789999985161222310023554-888863200156-888578888876415832100
Q gi|254780451|r 534 SGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGE-DQQGSPVYLRDI-WPKDSEIQSFVNKYVTCDLYK 611 (896)
Q Consensus 534 SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~-~~~G~~v~L~Di-wPs~~Ei~~~~~~~v~~~~f~ 611 (896)
|+||||+||.|-....+|||||++.+|+||||-| -||--. +..| |+ ||. .=-|+-|.
T Consensus 373 ~FNRNF~GR~G~~D~~VYL~SPE~~~A~AIAGEI-----~DPR~L~~~~G------d~~~~~----------~EM~~~y~ 431 (658)
T TIGR01342 373 SFNRNFKGRAGIEDDKVYLASPEVAVAAAIAGEI-----VDPRDLADDLG------DLKAIR----------VEMGEKYS 431 (658)
T ss_pred EECCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC-----CCCHHHHHCCC------CEEEEE----------EECCCCCC
T ss_conf 1045677888887670674270589898761565-----37355541048------624422----------10687688
Q ss_pred CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCC
Q ss_conf 01223347871220155787762056743334237887677654554332435855899965885723316456555447
Q gi|254780451|r 612 KKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQS 691 (896)
Q Consensus 612 ~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~s 691 (896)
-.|..-+- .+-.++ + .....|-+-|.+..+|...|-..+|.| -+++++.||||||||.|||+
T Consensus 432 ~Gy~~~~~------~~~~~E-E-----~~~~~~~~GPNI~~~P~~~PL~~~~~G-E~~L~~~DNITTDHI~PA~~----- 493 (658)
T TIGR01342 432 YGYDEADI------DILTKE-E-----RIDVDLIKGPNIKSLPVKDPLGEDVRG-EVLLKVEDNITTDHIIPATA----- 493 (658)
T ss_pred CCCCCCCC------CCCCCC-C-----CCCCCEECCCCCCCCCCCCCCCCCCCE-EEEEEEECCCCCCCCCCCCC-----
T ss_conf 87676667------888854-4-----545330018688648886868885210-18899715765253256641-----
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEE
Q ss_conf 37888987498865631456530235777665203601223212577765772245389978737999998998199889
Q gi|254780451|r 692 AAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLV 771 (896)
Q Consensus 692 pAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plV 771 (896)
+-|+.| +|-+-+ .| ||.++-+.+ +-+.+++.++.|.--|
T Consensus 494 ---~IL~lR--------------SNI~~~-------------------SE--y~~~~~D~~---F~~R~K~~~~kGkaG~ 532 (658)
T TIGR01342 494 ---DILKLR--------------SNIEAL-------------------SE--YVLSRVDDE---FVERAKKLDEKGKAGV 532 (658)
T ss_pred ---CHHHHH--------------HHHHHH-------------------HH--HHHHHCCHH---HHHHHHHHHHCCCEEE
T ss_conf ---011013--------------457887-------------------55--754202735---7899998750587348
Q ss_pred EECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEEC--HHHCCC
Q ss_conf 994677786730799988667617089997647898885053552322331789898881989743899726--322589
Q gi|254780451|r 772 VFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRK--LKTISP 849 (896)
Q Consensus 772 ViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~--~~~l~p 849 (896)
+|||+||||||||||||++|++|||++|||+||+|||++||+|+|||||+|++.++|+++. .||| +.|.. ++.++.
T Consensus 533 ~~~GENYGQGSSREHAAl~P~FLGV~~V~A~SFARIH~ANL~NFG~~PL~~~n~E~Y~~~~-~GD~-~E~~~d~~~~~~~ 610 (658)
T TIGR01342 533 LVAGENYGQGSSREHAALAPRFLGVRAVLAKSFARIHKANLVNFGVLPLEIDNKEDYDKIE-LGDD-VEVVDDLIEALKD 610 (658)
T ss_pred EECCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHC-CCCC-EECHHHHHHHHHC
T ss_conf 9735447888644688627512106888877676665430000220002246743446541-7981-3226899899847
Q ss_pred CCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHH
Q ss_conf 973899998189967999999873899999999909836898887
Q gi|254780451|r 850 RQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQ 894 (896)
Q Consensus 850 ~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~ 894 (896)
|++. ++|++.++ +++.++..+ |++|.+.+-+||-|+|+.++
T Consensus 611 G~~~-l~~~~~~~--~E~~~T~~~-~~~~~~~L~AGG~L~~~K~~ 651 (658)
T TIGR01342 611 GEDI-LVVRKTDD--EEILATLDL-SEVEKRILIAGGKLSLIKNK 651 (658)
T ss_pred CCEE-EEEEECCC--CEEEEEECC-CHHHHHHEECCCCHHHHHHH
T ss_conf 9748-99973488--436654047-83221210017601112201
No 13
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=0 Score=1228.81 Aligned_cols=404 Identities=72% Similarity=1.169 Sum_probs=396.6
Q ss_pred HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52200000357999999999999971999999287898139986832110059988999899988754267899998774
Q gi|254780451|r 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896)
Q Consensus 88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896)
||+||||||+||++|||||||+++++|+||++|||.+|+|||||||||||++|+++++++|+++||+||+|||+||||+|
T Consensus 1 Rvl~QD~Tg~~a~~dlaamr~~~~~~g~dp~~i~p~vp~~lviDHsv~~d~~~~~~~~~~n~~~e~~rn~Ery~flk~~~ 80 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQ 80 (404)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 94000055744999999989999971899544488898749978851016778855676636788875489999999999
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEE
Q ss_conf 21488078608876216778986335113103688617983013206887644452012320343489999970775141
Q gi|254780451|r 168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISM 247 (896)
Q Consensus 168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~ 247 (896)
++|+||+|||||+||||||||||||+|||.++.++++|+||||||||||||||+||||+|||||||+|++++|+|||+||
T Consensus 81 ~~f~~~~~~pPG~GI~HQv~lE~~~~~v~~~~~~~~~~a~P~tlVGtDSHT~t~GalG~la~GvGg~da~~~m~g~~~~~ 160 (404)
T cd01586 81 KAFKNLRVVPPGTGIIHQVNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISM 160 (404)
T ss_pred HHHCCEEEECCCCCEECHHHHHHCCCEEEEECCCCCCEECCCCEEECCCCCCCCCHHHHHEECCCHHHHHHHHHCCEEEE
T ss_conf 97487788579997140888764022267521378864579989875335653346677557247999999984588898
Q ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH
Q ss_conf 16728999997677864436889999999841022121279996155001787563212000100372037751998999
Q gi|254780451|r 248 LLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI 327 (896)
Q Consensus 248 ~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~ 327 (896)
++||+|||+|+|+|++|||||||||+|+++||++|++||+|||+|||+++||++||||||||++|+||||||||+|
T Consensus 161 ~vPevi~v~l~G~L~~gvtaKDviL~i~~~l~~~G~~gk~vEf~G~gi~~LS~~~R~TI~NM~~E~GAt~gifp~D---- 236 (404)
T cd01586 161 LLPEVVGVKLTGKLRPGVTATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---- 236 (404)
T ss_pred ECCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCCHHHHHHHHHCCHHHCCEEEEECCC----
T ss_conf 6686899999714699977889999999985506853599998686231299888666762442006544455677----
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCC
Q ss_conf 99986399988999999874641023676766788630699998031430122656656413677730116687664001
Q gi|254780451|r 328 DYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYK 407 (896)
Q Consensus 328 ~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~ 407 (896)
++++|||||+|||+||||++|||+++++
T Consensus 237 -------------------------------------~~vieiDLs~leP~va~P~~P~~~v~v~--------------- 264 (404)
T cd01586 237 -------------------------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH--------------- 264 (404)
T ss_pred -------------------------------------CEEEEEEHHHCCEECCCCCCHHHCCCCC---------------
T ss_conf -------------------------------------7499999687753046898843346356---------------
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCC
Q ss_conf 10023210245788888755544575310467654599987788999889864987586730797016189999999858
Q gi|254780451|r 408 KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAG 487 (896)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~G 487 (896)
++|++|+||||||+||+++|++|++|||||+++|+|++||||++++|||++|++|++++|
T Consensus 265 --------------------~~i~~a~IgSCTN~s~~dl~~aA~lla~~av~~G~kv~p~Vk~~v~PgS~~V~~~l~~~G 324 (404)
T cd01586 265 --------------------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASG 324 (404)
T ss_pred --------------------CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCC
T ss_conf --------------------753067764666888766999999999899976880177730899379799999998777
Q ss_pred CHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC
Q ss_conf 85777750530205532242127776883022101136635878633676666546854331000597899999851612
Q gi|254780451|r 488 LVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 (896)
Q Consensus 488 ll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I 567 (896)
++++|+++||.|++|||++||||+|||+++++++|.++++++++|+|+||||+|||||..+++|||||++|+||||+|+|
T Consensus 325 l~~~l~~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~v~S~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G~I 404 (404)
T cd01586 325 LLPYLEKLGFHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred HHHHHHHCCCEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCC
T ss_conf 39999973988858816213186999880565433049847964137488978679999898796798999999806409
No 14
>pfam00330 Aconitase Aconitase family (aconitate hydratase).
Probab=100.00 E-value=0 Score=1029.66 Aligned_cols=463 Identities=35% Similarity=0.505 Sum_probs=416.1
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHC
Q ss_conf 57999999986123554577766364532522000003579999999999999719999992878981399868321100
Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDY 138 (896)
Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~ 138 (896)
+++++++.+|+.|.. ....+.+|.|+|+|++|||+||.||+.+|++|++.+.+ |++ +++++||+|+++.
T Consensus 1 Tl~eKI~~~H~~~~~-~~~~~~~i~~~vDr~l~hD~T~p~a~~~l~~~g~~v~~----~~~------~~~~~DH~vp~~~ 69 (464)
T pfam00330 1 TLYEKILDAHVDDPA-NERGTPYLYIRPDRVLMQDVTSPQAFLGLRAAGRPVRR----VPG------TTITCDHNIPTQD 69 (464)
T ss_pred CHHHHHHHHHCCCCC-CCCCCCEEEEECCEEEEECCCHHHHHHHHHHCCCCCCC----CCC------EEEEECCCCCCCC
T ss_conf 977899998558754-57888449997668877645629999999976997638----898------3699597887676
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCCC
Q ss_conf 59988999899988754267899998774214880786088762167789863351131036886179830-13206887
Q gi|254780451|r 139 SGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSH 217 (896)
Q Consensus 139 ~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDSH 217 (896)
+++ .|+.+|++||+|+|+||||++++|.+..+.|||.||||||++| .+++.|| ++||||||
T Consensus 70 ~~~-----~~~~~~~~~~~e~~~~l~~~~k~~gi~~~~~~~~GI~Hqv~~E-------------~g~~~PG~~ivG~DSH 131 (464)
T pfam00330 70 GGE-----KDLNIAIERNKEQYDFLEKNVKAFGVGFWGPGSTGIVHQIGLE-------------NGFTLPGLTLVGTDSH 131 (464)
T ss_pred CCC-----CCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEEHHH-------------CCCCCCCCEEEECCCC
T ss_conf 444-----4312345778999999999999829945579998668477334-------------0865799579865556
Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC
Q ss_conf 64445201232034348999997077514116728999997677864436889999999841022121279996155001
Q gi|254780451|r 218 TTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFES 297 (896)
Q Consensus 218 T~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~ 297 (896)
|||+||||+||||||++|++++|++|++||++||+|+|+|+|+|++|||+|||||+|++.||.+|++||+|||+|||+++
T Consensus 132 T~t~GalG~la~GvG~td~a~~l~t~~~~~~vPe~i~v~l~G~l~~gvtaKDliL~ii~~l~~~G~~g~~vEf~G~~i~~ 211 (464)
T pfam00330 132 TPTHGGLGALAFGVGGSEAEHVLAGQPWEQKKPKVMGIKLTGKLNGGITAKDVILKVIGKLTVKGGTGKIVEFFGEGIDD 211 (464)
T ss_pred CCCCCHHHHEEECCCHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECHHHHH
T ss_conf 67657556616716899999998368489863647899887776999876689999999846077650799996535442
Q ss_pred CCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 78756321200010037203775199899999986399988999999874641023676766788630699998031430
Q gi|254780451|r 298 MVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSP 377 (896)
Q Consensus 298 LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP 377 (896)
||+++|||||||++|+|||+||||+|++|++||+.++|+++..++.|+|.+.+.|| +|++|.|+++++||||+|||
T Consensus 212 Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~~~~~~~~~~~~~~l~----~D~dA~Y~~~i~iDls~leP 287 (464)
T pfam00330 212 LSMEGRMTICNMAIEIGATTGLFPPDETTFKYLKGTGRAPKAEEADEAVAKWKTLK----SDKDAQYDKVIEIDLSDIEP 287 (464)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC----CCCCCEEEEEEEEECCCCEE
T ss_conf 57555555654014216647998156667899855578825999999997522342----58877062157881466115
Q ss_pred HHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 12265665641367773011668766400110023210245788888755544575310467654599987788999889
Q gi|254780451|r 378 SVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNA 457 (896)
Q Consensus 378 ~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkA 457 (896)
+||||++|+|+++++++..++....+...+ .......+........+.++.|.+|+||||||++++++++||++|+++
T Consensus 288 ~va~P~~P~~~~~v~e~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~l~~~~Id~afIGSCTNgr~~Dl~~AA~iLkg~- 365 (464)
T pfam00330 288 HVTGPTTPQDAVPISEVPPDPNNFLDPVVK-SMEKALAYMGLWPGTPLKDIKVDKAFIGSCTNSSYEDLRRAAAIVKGA- 365 (464)
T ss_pred EECCCCCCCCEEEHHHCCCCHHHHCCHHHH-HHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH-
T ss_conf 625998933124956707553430212455-677777640578885036874899998145799964799999998634-
Q ss_pred HHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCC
Q ss_conf 86498758673079701618999999985885777750530205532242127776883022101136635878633676
Q gi|254780451|r 458 VRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNR 537 (896)
Q Consensus 458 v~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNR 537 (896)
+|+|++||||++++|||++|+++++++|++++|+++||.|.+|||++|+||++..+. + ..+++ ++|+|+||
T Consensus 366 --~~~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~pgCg~C~G~~~~~~~-~---~~~ge---~~vsT~NR 436 (464)
T pfam00330 366 --AGKGLKPWVKATVVPGSEQVKATAERDGLDKIFDEAGFEWRANGCSPCIGMNDRPDI-I---KGEKN---TCVSSSNR 436 (464)
T ss_pred --CCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCHHCCCCCCCCCC-C---CCCCC---EEEEEECC
T ss_conf --246778873699989989999999988629999975988899775003370998764-3---57887---89982088
Q ss_pred CCCCCCCCCCCCEEECCHHHHHHHHHHC
Q ss_conf 6665468543310005978999998516
Q gi|254780451|r 538 NFEGRISPDVEANYLLSPPLVVAYALAG 565 (896)
Q Consensus 538 NFeGR~~p~~~~~yLaSP~lVvA~AiaG 565 (896)
||+||||+..+++|||||++|+||||+|
T Consensus 437 NF~GR~G~~~~~~yLaSP~~vaAsAi~G 464 (464)
T pfam00330 437 NFEGRQGANGRTHWLASPAMVAAAAIAG 464 (464)
T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHCC
T ss_conf 9887889898868963999999998439
No 15
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=0 Score=1027.86 Aligned_cols=410 Identities=31% Similarity=0.482 Sum_probs=358.2
Q ss_pred HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52200000357999999999999971999999287898139986832110059988999899988754267899998774
Q gi|254780451|r 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896)
Q Consensus 88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896)
||+|||+||+||++||++| |.+ ++.+|++|+|||+||++++++. |+..+++||+|||+||||++
T Consensus 1 Rv~~~D~Tg~~A~~~~~~~-------G~~----~~~~P~~v~~DH~v~~~~~~~~-----~~~~~~~~n~e~~~flk~~~ 64 (412)
T cd01584 1 RVAMQDATAQMALLQFMSS-------GLP----KVAVPSTIHCDHLIEAQVGGEK-----DLKRAKDINKEVYDFLASAG 64 (412)
T ss_pred CCEEEECCHHHHHHHHHHC-------CCC----CCCCCCEEEECCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf 9015756518999999976-------999----8999873880786200236642-----07888776599999999999
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE-EEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCE
Q ss_conf 2148807860887621677898633511310368861798301-320688764445201232034348999997077514
Q gi|254780451|r 168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPIS 246 (896)
Q Consensus 168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdt-lVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~ 246 (896)
++| |++++|||+|||||||+| ++++||+ +|||||||||+||||+|||||||+|++++|+|||||
T Consensus 65 ~~~-g~~~~~pg~GI~Hqv~~E--------------~~a~PG~~ivGtDSHT~t~GalG~~a~GvG~~e~~~~m~g~~~~ 129 (412)
T cd01584 65 AKY-GIGFWKPGSGIIHQIVLE--------------NYAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWE 129 (412)
T ss_pred HHC-CCEEECCCCEEEEEECCC--------------CCCCCCCEEEECCCCCCCCCHHHHEEEECCHHHHHHHHCCCEEE
T ss_conf 980-976889997038247554--------------76579977985135666646466427703899999998198787
Q ss_pred ECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHH
Q ss_conf 11672899999767786443688999999984102212127999615500178756321200010037203775199899
Q gi|254780451|r 247 MLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326 (896)
Q Consensus 247 ~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T 326 (896)
|++||||+|+|+|+|++|||||||||+|++.|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|
T Consensus 130 ~~vPe~i~v~l~G~l~~gV~akDviL~ii~~l~~~g~~~k~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T 209 (412)
T cd01584 130 LKCPKVIGVKLTGKLSGWTSPKDVILKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERM 209 (412)
T ss_pred EECCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHHH
T ss_conf 12797899999814799977889999999985317743179999785314488877553531664558513343686679
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHC
Q ss_conf 99998639998899999987464102367676678863069999803143012265665641367773011668766400
Q gi|254780451|r 327 IDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYY 406 (896)
Q Consensus 327 ~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~ 406 (896)
++||+.+||++ ..+..+.| + |....+|++|+|+++++||||+|+|+||||++|++++|+++++.....
T Consensus 210 ~~YL~~~gr~~-~~~~~~~~-~----~~~l~~D~~a~Y~~~ieiDls~ieP~VA~P~~P~~~~pv~~~~~~~~~------ 277 (412)
T cd01584 210 KKYLKATGRAE-IADLADEF-K----DDLLVADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK------ 277 (412)
T ss_pred HHHHHHCCCCH-HHHHHHHH-H----HHCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHH------
T ss_conf 99988659727-89999998-8----633578999845699999801147861599896546616887688986------
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHC
Q ss_conf 11002321024578888875554457531046765459998778899988986498758673079701618999999985
Q gi|254780451|r 407 KKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQA 486 (896)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~ 486 (896)
. +. ..+|.+++||||||+++++ |.+|+.++|+|+.+|++ |.||++++|||++|++||+++
T Consensus 278 -------~-----~~-----~~~i~~~~IGSCTNgr~~D-l~~AA~ilk~a~~~g~~--~~v~~~v~PgS~~V~~~~~~~ 337 (412)
T cd01584 278 -------N-----GW-----PLDLRVGLIGSCTNSSYED-MGRAASIAKQALAHGLK--CKSIFTITPGSEQIRATIERD 337 (412)
T ss_pred -------C-----CC-----CCCCCEEEEECCCCCCCHH-HHHHHHHHHHHHHCCCC--CCCEEEECCCCHHHHHHHHHC
T ss_conf -------2-----88-----6432235761235888457-99999999999856887--661389668988999999988
Q ss_pred CCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCC-CEEECCHHHHHHHHHHC
Q ss_conf 88577775053020553224212777688302210113663587863367666654685433-10005978999998516
Q gi|254780451|r 487 GLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVE-ANYLLSPPLVVAYALAG 565 (896)
Q Consensus 487 Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~-~~yLaSP~lVvA~AiaG 565 (896)
||+++|+++||.|.+||||+|+||++... +..++ ..++|+|+||||+||||+... .+|||||++|+||||+|
T Consensus 338 Gl~~~l~~aG~~v~~~gCg~C~G~~~~~~------~~~g~-~~~~vss~NRNF~GR~g~~~~~~~YLaSP~~vaAsAi~G 410 (412)
T cd01584 338 GLLQTFRDAGGIVLANACGPCIGQWDRKD------IKKGE-KNTIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAG 410 (412)
T ss_pred CCHHHHHHCCCEECCCCCHHCCCCCCCCC------CCCCC-CCEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCC
T ss_conf 73899997798888882433108298767------78777-766995448897778999998558978999999999632
Q ss_pred CC
Q ss_conf 12
Q gi|254780451|r 566 NV 567 (896)
Q Consensus 566 ~I 567 (896)
+|
T Consensus 411 ~I 412 (412)
T cd01584 411 TL 412 (412)
T ss_pred CC
T ss_conf 09
No 16
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=0 Score=995.74 Aligned_cols=458 Identities=26% Similarity=0.349 Sum_probs=393.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH
Q ss_conf 66579999999861235545777663645325220000035799999999999997199999928789813998683211
Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896)
+.++.|+++.+|+-- ..++.++-+++||+++||+||.||+.+|++|+..+ .+|...+ +++||+|++
T Consensus 3 ~~Tl~eKI~~~h~~~----~~~~~~~~~~vD~~l~hD~T~p~a~~~l~~~~~~v---------~~p~~~~-~~~DH~vp~ 68 (472)
T PRK12466 3 PRTLYDKLWDSHVVA----RLDDGAVLLYIDRHLLHEYTSPQAFAGLRARGRTV---------RRPDLTL-AVVDHVVPT 68 (472)
T ss_pred CCCHHHHHHHHHCCC----CCCCCCEEEEEEEEEEECCCHHHHHHHHHHCCCCC---------CCCCCCE-EEECCCCCC
T ss_conf 624999999984686----56898378991167663364699999999759984---------4799972-840989887
Q ss_pred HCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEE
Q ss_conf 005998---8999899988754267899998774214880786088762167789863351131036886179830-132
Q gi|254780451|r 137 DYSGNK---DAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCV 212 (896)
Q Consensus 137 d~~g~~---~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlV 212 (896)
+..... +...+++..++++|.+||. +++|++++||.||||||++| +|+++|| ++|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lr~~a~~~g--------i~~f~~~~~~~GI~H~v~~E-------------~g~~~PG~~iv 127 (472)
T PRK12466 69 RPGRDRGITDPGGALQVDYLRENCADHG--------IRLFDVDDPRQGIVHVVAPE-------------LGLTLPGMTIV 127 (472)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHC--------CCCCCCCCCCCCEEEEECCC-------------CCCCCCCEEEE
T ss_conf 6554455468679999999999999839--------71047899998768376443-------------57566883798
Q ss_pred ECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 06887644452012320343489999970775141167289999976778644368899999998410221212799961
Q gi|254780451|r 213 GTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFG 292 (896)
Q Consensus 213 GtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G 292 (896)
||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|++.|++.|++||+|||+|
T Consensus 128 gtDSHT~t~GalGala~GvG~td~~~~m~tg~~~~~vPe~i~v~l~G~l~~gVtaKDliL~ii~~l~~~G~~g~~vEF~G 207 (472)
T PRK12466 128 CGDSHTTTYGAFGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIEFAG 207 (472)
T ss_pred ECCCCCCCCCCCCEEEECCCHHHHHHHHHCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEC
T ss_conf 35666556675322574687999999983493786567189999947798998651899999999643773148999987
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 55001787563212000100372037751998999999863999889999998746410236767667886306999980
Q gi|254780451|r 293 SGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDL 372 (896)
Q Consensus 293 ~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDL 372 (896)
||+++||+++|||||||++|||||+||||+|++|++||+.++|.+.. +.|.++...|+...+|++|+|+++++|||
T Consensus 208 ~gi~~Ls~~~R~Ti~NMa~E~GA~~gif~~D~~t~~YL~~r~~~~~~----~~~~~~~~~~~~~~~D~da~Y~~~i~iDl 283 (472)
T PRK12466 208 EAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPFAPKG----ALWEAALAYWRTLRSDADAVFDREVEIDA 283 (472)
T ss_pred HHHCCCCHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCHHH----HHHHHHHHHHHHCCCCCCCCCCEEEEEEC
T ss_conf 35402898775535305502162377755768899998636664257----89999999986346787886566999988
Q ss_pred CCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 31430122656656413677730116687664001100232102457888887555445753104676545999877889
Q gi|254780451|r 373 GNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGL 452 (896)
Q Consensus 373 s~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgl 452 (896)
|+|+|+||||++|||++++++...++....+...+........+........+.+..|.+|+||||||+|++++++||++
T Consensus 284 s~leP~Va~P~~P~~~v~v~e~~p~~~~~~~~~~~~~~~~a~~y~~l~~~~~~~~~~Id~a~IGSCTNgr~~Dl~~aA~i 363 (472)
T PRK12466 284 ADIAPQVTWGTSPDQALPIDGRVPDPAAEADPARRAALERALDYMGLTPGQPLAGIPIDRVFIGSCTNGRIEDLRAAAAV 363 (472)
T ss_pred CCCEEECCCCCCCCCEEECCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 87612215899986146763357882451475667678876653268899433574551799946789983799999999
Q ss_pred HHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEE
Q ss_conf 99889864987586730797016189999999858857777505302055322421277768830221011366358786
Q gi|254780451|r 453 LARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGV 532 (896)
Q Consensus 453 lAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV 532 (896)
| +|+||+||||++++|||++|+.|++++|++++|+++||.|.+||||+|+|++|.+..+ ++ .++
T Consensus 364 l------kG~kv~~~Vr~~v~PgS~~V~~~~~~~Gl~~~l~~aGa~i~~~gCg~C~G~~~~~~~~-------ge---~~v 427 (472)
T PRK12466 364 L------RGRKVAPGVRALVVPGSGAVKRQAEAEGLDRIFIAAGFEWREPGCSMCLAMNGDVLAP-------GE---RCA 427 (472)
T ss_pred H------HCCCCCCCCCEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCHHHHCCCCCCCCC-------CC---EEE
T ss_conf 7------3786388877799689899999999877588999769789987643224809887999-------99---899
Q ss_pred ECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 3367666654685433100059789999985161222310023
Q gi|254780451|r 533 LSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896)
Q Consensus 533 ~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896)
+|+||||+|||||..+ +|||||++|+||||+|+| +||
T Consensus 428 st~NRNF~GR~g~~~~-~yLaSP~~vaAsAi~G~i-----tdp 464 (472)
T PRK12466 428 STTNRNFEGRQGPGAR-THLMSPAMAAAAAVAGHI-----VDV 464 (472)
T ss_pred EEECCCCCCCCCCCCC-EEECCHHHHHHHHHCEEE-----CCH
T ss_conf 7027898888997985-897699999999847273-----678
No 17
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=0 Score=959.84 Aligned_cols=454 Identities=26% Similarity=0.342 Sum_probs=379.3
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH
Q ss_conf 66579999999861235545777663645325220000035799999999999997199999928789813998683211
Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896)
+.++.++++.+|+-- . .++.++-.+.||+++||.||.+|+-.|..+ ...-.||++ +-.++||.++.
T Consensus 2 ~~Tl~eKI~~~H~v~--~--~~~~~~~l~iD~~~~hd~t~p~a~~~l~~~----g~~v~~p~~------~~~~~DH~vpt 67 (466)
T PRK05478 2 AKTLYDKLWDAHVVH--E--LEDGTDLLYIDRHLVHEVTSPQAFEGLRLA----GRKVRRPDK------TFATMDHNVPT 67 (466)
T ss_pred CCCHHHHHHHHHCCC--C--CCCCCEEEEEEHHHHHCCCHHHHHHHHHHC----CCCCCCCCC------EEEECCCCCCC
T ss_conf 855899999972265--5--689826999440566317689999999985----996368888------79963899988
Q ss_pred HCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHCCCEEEECCCCCEEEEEE-E
Q ss_conf 00599--88999899988754267899998774214880786088---762167789863351131036886179830-1
Q gi|254780451|r 137 DYSGN--KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPG---TGICHQINLEYLGQSVWTKNENGENIAYPD-T 210 (896)
Q Consensus 137 d~~g~--~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG---~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-t 210 (896)
..... .+... ++-+++|+-..+.| +++++.+| .||||||..| +|++.|| +
T Consensus 68 ~~~~~~~~~~~~----------~~~~~~l~~~~~~~-gi~~~~~~~~~~GI~H~v~~E-------------~G~~~PG~~ 123 (466)
T PRK05478 68 TDINRPIADPVA----------RIQVETLEKNCKEF-GITLFDLGDPRQGIVHVIGPE-------------QGLTLPGMT 123 (466)
T ss_pred CCCCCCCCCHHH----------HHHHHHHHHHHHHH-CCCCCCCCCCCCCEEEEECCC-------------CCCCCCCCE
T ss_conf 774555689789----------99999999999982-971246899998757787421-------------273689877
Q ss_pred EEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 32068876444520123203434899999707751411672899999767786443688999999984102212127999
Q gi|254780451|r 211 CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEF 290 (896)
Q Consensus 211 lVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf 290 (896)
+|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++|||||||||+|+++||.+|++||+|||
T Consensus 124 ivg~DSHT~t~GalGala~GvG~te~~~vmat~~~~~~vPe~i~v~l~G~L~~gVtaKDliL~ii~~l~~~G~~gk~vEF 203 (466)
T PRK05478 124 IVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKAKTMKIEVDGKLPPGVTAKDIILAIIGKIGTAGGTGYVIEF 203 (466)
T ss_pred EEEECCCCCCCCHHHHHEECCCHHHHHHHHCCCEEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 99624576654777887046679999999807837885672899998178899987799999999985646778559999
Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 61550017875632120001003720377519989999998639998899999987464102367676678863069999
Q gi|254780451|r 291 FGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKL 370 (896)
Q Consensus 291 ~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~viei 370 (896)
+|||+++||+++|||||||++||||||||||+|++|++||+ ||+ .....+.|.+++.+|+...+|++|+|+++++|
T Consensus 204 ~G~gv~~Ls~~~R~TI~NMa~E~GA~~gifp~D~~T~~YL~--gR~--~~p~~~~~~~a~~~~~~l~~D~~a~Y~~~i~i 279 (466)
T PRK05478 204 AGEAIRALSMEGRMTVCNMSIEGGARAGLVAPDETTFEYLK--GRP--FAPKGEDWDKAVAYWKTLKSDEDAVFDKVVTL 279 (466)
T ss_pred ECCCCCCCCHHHHHHHHCCCHHHCCEEEEECCCHHHHHHHH--CCC--CCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 46510214787865564033734867999657787999986--166--67308999999987641346888712169999
Q ss_pred ECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 80314301226566564136777301166876640011002321024578888875554457531046765459998778
Q gi|254780451|r 371 DLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGA 450 (896)
Q Consensus 371 DLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaA 450 (896)
|||+|||+||||++|||+++++++..++....+............++.......+.+.+|.+|+||||||++++++++||
T Consensus 280 Dls~leP~Va~p~~P~~~v~v~~~~p~~~~~~~~~~~~~~~~a~~ym~~~~g~~~~~~~Id~a~IGSCTNgr~~Dl~~AA 359 (466)
T PRK05478 280 DAADIAPQVTWGTNPGQVISIDGKVPDPEDEADPVKRASAERALAYMGLKPGQPITDIKIDKVFIGSCTNSRIEDLRAAA 359 (466)
T ss_pred EHHHCCEEECCCCCHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 84313011128988443407523478824303634556787765531667895114771017999216899806899999
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCC-CCCCCCCHHHHHCCCCCEEE
Q ss_conf 89998898649875867307970161899999998588577775053020553224212-77768830221011366358
Q gi|254780451|r 451 GLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVV 529 (896)
Q Consensus 451 gllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiG-nsG~l~~~i~~~i~~~~l~~ 529 (896)
+++ ||+||+||||++++|||++|++||+++||+++|+++||.|++|||++||| |+|.+.+ ++
T Consensus 360 ~il------kG~kv~~~Vr~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~GC~~CiG~~~~~l~~--------ge--- 422 (466)
T PRK05478 360 AVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGFEWREPGCSMCLAMNPDRLPP--------GE--- 422 (466)
T ss_pred HHH------CCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHCCCEECCCCCHHCCCCCCCCCCC--------CC---
T ss_conf 997------6986578832999789899999999867599999769688688353024869887999--------98---
Q ss_pred EEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7863367666654685433100059789999985161222310023
Q gi|254780451|r 530 AGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896)
Q Consensus 530 ~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896)
.+++|+||||+|||||..+ +|||||++|+||||+|+| +||
T Consensus 423 ~~vSt~NRNF~GR~g~~~~-~yLaSP~~vaAsAi~G~I-----tdp 462 (466)
T PRK05478 423 RCASTSNRNFEGRQGKGGR-THLVSPAMAAAAAITGHF-----VDV 462 (466)
T ss_pred EEEEEECCCCCCCCCCCCC-EEECCHHHHHHHHHCCCC-----CCH
T ss_conf 8998748897888898988-787899999999966154-----885
No 18
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=0 Score=877.76 Aligned_cols=410 Identities=30% Similarity=0.462 Sum_probs=346.8
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH
Q ss_conf 66579999999861235545777663645325220000035799999999999997199999928789813998683211
Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896)
|.++.|+++..++.- ..-.++..|-.+++|+++||+||.+++.+|..|- .+.-.||++ +-+++||.++.
T Consensus 2 g~Tl~EKIl~~h~~~--~~v~~Gd~v~~~vD~~~~hD~t~p~a~~~~~~~g---~~~v~~p~k------v~~~~DH~vp~ 70 (419)
T PRK00402 2 GMTLAEKILAAHAGR--EPVSPGEVVEAKVDLVMAHDITGPLAIKELEELG---ADKVFDPDR------VVLVIDHFTPA 70 (419)
T ss_pred CCCHHHHHHHHHHCC--CCCCCCCEEEEECCEEEEEECCHHHHHHHHHHCC---CCCCCCCCC------EEEECCCCCCC
T ss_conf 868899999996099--8789998899977899997055899999999819---986788777------88977889979
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCEE--EECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEE
Q ss_conf 0059988999899988754267899998-7742148807--86088762167789863351131036886179830-132
Q gi|254780451|r 137 DYSGNKDAVTRNKDLEYQRNEERYRFLK-WGQKSFKNFR--VVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCV 212 (896)
Q Consensus 137 d~~g~~~a~~~n~~~e~~rN~Ery~Flk-wa~~~f~~~~--v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlV 212 (896)
.... +.+.+++++ |+++ + +++ +.+|+.||||||++| ++++.|| ++|
T Consensus 71 ~~~~---------------~a~~~~~~r~fa~~-~-gi~~~~d~~~~GI~Hqv~~E-------------~g~~~PG~~iv 120 (419)
T PRK00402 71 KDIK---------------SAEQQKILRDFARE-H-GIPHFFDVGRMGICHALLPE-------------KGLVRPGDVVV 120 (419)
T ss_pred CCHH---------------HHHHHHHHHHHHHH-H-CCCCCCCCCCCCEEEEEECC-------------CCCCCCCCEEE
T ss_conf 9856---------------79999999999998-4-97603248998688786000-------------27446882798
Q ss_pred ECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 06887644452012320343489999970775141167289999976778644368899999998410221212799961
Q gi|254780451|r 213 GTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFG 292 (896)
Q Consensus 213 GtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G 292 (896)
||||||||+||||+||||||++|++++|+++++|+++||+|+|+|+|+|++||++|||+|+|++.|+.+|++||+|||+|
T Consensus 121 g~DSHT~t~GalGala~GvG~td~~~~latg~~w~~vPe~v~v~l~G~l~~gv~akDviL~i~~~l~~~g~~~~~vEf~G 200 (419)
T PRK00402 121 GADSHTCTYGALGAFATGMGSTDLAAAMATGKTWFRVPETIKVVLNGKLPPGVYAKDVILHLIGQIGVDGATYKAMEFTG 200 (419)
T ss_pred ECCCCCCCCCCCCEEEECCCHHHHHHHHCCCCEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 35888776675523663467799999980292677078578999947489997799999999987385777876999938
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 55001787563212000100372037751998999999863999889999998746410236767667886306999980
Q gi|254780451|r 293 SGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDL 372 (896)
Q Consensus 293 ~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDL 372 (896)
||+++||+++|||||||++|+||++||||+|++|++||+.+++.+ |....+|++|.|+++++|||
T Consensus 201 ~~i~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~---------------~~~~~~D~da~Y~~~~~iDl 265 (419)
T PRK00402 201 EAIEALSMDERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAKRD---------------YKPWRSDPDAKYERVIEIDL 265 (419)
T ss_pred CCCCCCCHHHHHHHHCCCHHHCCEEEEECCCHHHHHHHHHHCCCC---------------CCCCCCCCCCCEEEEEEEEH
T ss_conf 630348988964454021433443466668688999999725365---------------40102799984227989857
Q ss_pred CCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf 31430122656656413677730116687664001100232102457888887555445753104676545999877889
Q gi|254780451|r 373 GNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGL 452 (896)
Q Consensus 373 s~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgl 452 (896)
|+|+|+||+|++|+|+++++++.. ..|.+++||||||++++++++||.+
T Consensus 266 s~l~P~va~P~~P~n~~~v~e~~g-------------------------------~~Id~~~IGSCTngr~~Dl~~aA~i 314 (419)
T PRK00402 266 SKLEPQVAAPHSPDNVKPVSEVEG-------------------------------TKVDQVFIGSCTNGRLEDLRIAAEI 314 (419)
T ss_pred HHCCCEECCCCCCCCEEECHHHCC-------------------------------CCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 876602208989221327556459-------------------------------8343999960678988899999898
Q ss_pred HHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCC-CCCCCHHHHHCCCCCEEEEE
Q ss_conf 99889864987586730797016189999999858857777505302055322421277-76883022101136635878
Q gi|254780451|r 453 LARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNS-GALKKEISEVIHQKSLVVAG 531 (896)
Q Consensus 453 lAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGns-G~l~~~i~~~i~~~~l~~~s 531 (896)
| +|+||+||||++++|||++|+.+++++|++++|.++||.|.+|||++|+|++ |++.+ ++ ++
T Consensus 315 l------kg~~v~~~vr~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~gCg~C~G~~~g~~~~--------ge---~~ 377 (419)
T PRK00402 315 L------KGRKVAPGVRLIVIPASQKIYKQALKEGLIEILIEAGAVVSPPTCGPCLGGHMGVLAD--------GE---VC 377 (419)
T ss_pred H------CCCCCCCCCEEEECCCCHHHHHHHHHCCCHHHHHHCCCEECCCCCHHHHCCCCCCCCC--------CC---EE
T ss_conf 6------4887788722786178499999999877698999779889588454213809887999--------98---89
Q ss_pred EECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 63367666654685433100059789999985161222310023
Q gi|254780451|r 532 VLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896)
Q Consensus 532 V~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896)
|+|+||||+||||+....+|||||++|+||||+|+| +||
T Consensus 378 vst~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i-----tdp 416 (419)
T PRK00402 378 LSTTNRNFVGRMGSPESEVYLASPAVAAASAVAGRI-----TDP 416 (419)
T ss_pred EEECCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCC-----CCC
T ss_conf 985588987668998882797899999999968257-----891
No 19
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=0 Score=860.86 Aligned_cols=388 Identities=36% Similarity=0.569 Sum_probs=344.2
Q ss_pred HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52200000357999999999999971999999287898139986832110059988999899988754267899998774
Q gi|254780451|r 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896)
Q Consensus 88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896)
||++||.||.+|+.+|..|+. +.++.....+.+++||+++.+. .+|.|+|+||+|..
T Consensus 1 Rvl~hD~Tgp~a~~~~~~~~~--------~~~v~dp~~v~~v~DH~~p~~~---------------~~~~~~~~~lr~f~ 57 (389)
T cd01351 1 RVMLQDATGPMAMKAFEILAA--------LGKVADPSQIACVHDHAVQLEK---------------PVNNEGHKFLSFFA 57 (389)
T ss_pred CEEEEECCCHHHHHHHHHCCC--------CCCCCCCCCEEEEECCCCCCCC---------------HHHHHHHHHHHHHH
T ss_conf 946774653999999997489--------8877898667998688788888---------------66599999999999
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCE
Q ss_conf 214880786088762167789863351131036886179830-1320688764445201232034348999997077514
Q gi|254780451|r 168 KSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPIS 246 (896)
Q Consensus 168 ~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~ 246 (896)
+.+ ++++++||+||||||++|. ++.|| ++|||||||||+||||+||||||++|++++|+++++|
T Consensus 58 ~~~-gi~~~~~g~GI~H~v~~E~--------------~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~~~ 122 (389)
T cd01351 58 ALQ-GIAFYRPGVGIIHQIMVEN--------------LALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAW 122 (389)
T ss_pred HHC-CCEEECCCCCCCCEECHHC--------------CCCCCCEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCC
T ss_conf 982-9848898996175360301--------------6899987983786766688332379767899999998149362
Q ss_pred ECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHH
Q ss_conf 11672899999767786443688999999984102212127999615500178756321200010037203775199899
Q gi|254780451|r 247 MLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326 (896)
Q Consensus 247 ~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T 326 (896)
+++||+|+|+|+|+|++||++|||||+|++.++++|++||++||+|+++++||+++|||||||++|+||++||||+|++|
T Consensus 123 ~~vPeti~v~l~G~l~~gv~~KDviL~i~~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~tl~NMa~E~GA~~gi~~~D~~t 202 (389)
T cd01351 123 LKKPEVVGVNLTGKLSPGVTGKDVVLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTT 202 (389)
T ss_pred CCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 54897899999833699988999999999997326766279999771122389888654542001047407996586889
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHC
Q ss_conf 99998639998899999987464102367676678863069999803143012265665641367773011668766400
Q gi|254780451|r 327 IDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYY 406 (896)
Q Consensus 327 ~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~ 406 (896)
++||+.+||.+......+. |....+|++|+|+++++||||+|||+||+|++|+|++|++++.
T Consensus 203 ~~yl~~~~~~~~~~~~~~~-------~~~l~~D~dA~Y~~~i~iDls~leP~vA~P~~pdnv~~v~e~~----------- 264 (389)
T cd01351 203 LKWLEATGRPLLKNLWLAF-------PEELLADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVE----------- 264 (389)
T ss_pred HHHHHHCCCCHHHHHHHHH-------HHHCCCCCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCHHHHC-----------
T ss_conf 9999875997278899998-------9755689998565899998111343678999822244988816-----------
Q ss_pred CCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHC
Q ss_conf 11002321024578888875554457531046765459998778899988986498758673079701618999999985
Q gi|254780451|r 407 KKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQA 486 (896)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~ 486 (896)
...|.+++||||||++..++..||.+| ||+||+||||++++|||++|+.+++++
T Consensus 265 --------------------~~~Id~v~IGSCTngr~eDl~~AA~il------kg~kv~~~vr~~V~P~S~~v~~~a~~~ 318 (389)
T cd01351 265 --------------------GTKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLSRE 318 (389)
T ss_pred --------------------CCCEEEEEECCCCCCCCHHHHHHHHHH------HCCCCCCCEEEEEECCCHHHHHHHHHC
T ss_conf --------------------555589995054689978899999987------357668825899945988999999987
Q ss_pred CCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCC
Q ss_conf 88577775053020553224212777688302210113663587863367666654685433100059789999985161
Q gi|254780451|r 487 GLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN 566 (896)
Q Consensus 487 Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~ 566 (896)
|++++|.++||.|..|||++|+|+++.+.. +++ ++++|+||||+||||+....+||+||++|+|+||+|+
T Consensus 319 G~~~~l~~aGa~i~~pgCg~C~G~~~~~~~-------~ge---~~vsT~NRNF~GRmG~~~~~~yLaSP~~vaasAi~G~ 388 (389)
T cd01351 319 GYYEILVDSGARILPPGCGPCMGNGARLVA-------DGE---VGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGK 388 (389)
T ss_pred CCHHHHHHCCCEECCCCCCCCCCCCCCCCC-------CCC---EEEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHCCC
T ss_conf 659899976978888835146060998799-------998---8998479898878998978279899999999986543
Q ss_pred C
Q ss_conf 2
Q gi|254780451|r 567 V 567 (896)
Q Consensus 567 I 567 (896)
|
T Consensus 389 I 389 (389)
T cd01351 389 I 389 (389)
T ss_pred C
T ss_conf 9
No 20
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=0 Score=864.84 Aligned_cols=379 Identities=34% Similarity=0.553 Sum_probs=339.9
Q ss_pred CHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 25220000035799999999999997199999928789813998683211005998899989998875426789999877
Q gi|254780451|r 87 SRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWG 166 (896)
Q Consensus 87 ~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa 166 (896)
||+++||.||.+|+.+|.. +|. .+++|...+ .++||.+.... .+|.++|+||||-
T Consensus 1 D~~~~hD~T~p~a~~~l~~-------~g~--~~~~~~~~v-~~~DH~~p~~~---------------~~~a~~~~~lr~f 55 (380)
T cd01585 1 DQTLTQDATGTMAYLQFEA-------MGV--DRVRTELSV-SYVDHNTLQTD---------------FENADDHRFLQTV 55 (380)
T ss_pred CCCEEEECCHHHHHHHHHH-------CCC--CCCCCCCEE-EEECCCCCCCC---------------CCCHHHHHHHHHH
T ss_conf 9633400448999999998-------499--852899748-97088998988---------------4388999999999
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 4214880786088762167789863351131036886179830-132068876444520123203434899999707751
Q gi|254780451|r 167 QKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPI 245 (896)
Q Consensus 167 ~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~ 245 (896)
.++| |+.+++||.||||||++| +++.|| ++||+||||||+||||+||||||++|++++|+++++
T Consensus 56 a~~~-gi~~~~~g~GI~Hqv~~E--------------~~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~ 120 (380)
T cd01585 56 AARY-GIYFSRPGNGICHQVHLE--------------RFAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPY 120 (380)
T ss_pred HHHH-CCEECCCCCCEEEEECCC--------------CCCCCCCEEEECCCCCCCCCCCCCCEECCCHHHHHHHHCCCEE
T ss_conf 9981-980628999768478642--------------5668998798476566878721126878689999999816868
Q ss_pred EECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHH
Q ss_conf 41167289999976778644368899999998410221212799961550017875632120001003720377519989
Q gi|254780451|r 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRG 325 (896)
Q Consensus 246 ~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~ 325 (896)
||++||+|+|+|+|+|++||++|||||+|++.|+.+|++||++||+|+++++||+++|||||||++|+||++||||+|++
T Consensus 121 w~~vPeti~v~l~G~l~~gV~aKDviL~ii~~lg~~g~~~~~iEF~G~~i~~ls~~~R~Tl~NMa~E~GA~~gi~~~De~ 200 (380)
T cd01585 121 YIPMPKVVGVRLTGELPPWVTAKDVILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDER 200 (380)
T ss_pred EEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCHH
T ss_conf 88789789999982379997789999999999744466536999967420228887754565155234552667447389
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHH
Q ss_conf 99999863999889999998746410236767667886306999980314301226566564136777301166876640
Q gi|254780451|r 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEY 405 (896)
Q Consensus 326 T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~ 405 (896)
|++||+.+||+.++ ....+|+||+|+++++||||+|||+||+|++|+|++|++++..
T Consensus 201 t~~yl~~~~~~~~~--------------~~l~~D~dA~Y~~~i~iDls~leP~vA~P~~pdnv~~v~e~~g--------- 257 (380)
T cd01585 201 TREFLAAQGREDDW--------------VELAADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG--------- 257 (380)
T ss_pred HHHHHHHHCCHHHH--------------HHCCCCCCCCEEEEEEEEHHHCCEEECCCCCCCCEEECCCCCC---------
T ss_conf 99999872980443--------------1035899997138999986546233269989876668622379---------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 01100232102457888887555445753104676545999877889998898649875867307970161899999998
Q gi|254780451|r 406 YKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
..|..++||||||+++++++++|.+| +|+||+|+||++++|||++|+.++++
T Consensus 258 ----------------------~~Id~vfIGSCTngr~eDl~~aA~iL------kg~kv~~~Vr~~V~P~S~~V~~~a~~ 309 (380)
T cd01585 258 ----------------------IKVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLAR 309 (380)
T ss_pred ----------------------CCEEEEEEEECCCCCCHHHHHHHHHH------CCCCCCCCCCEECCCCCHHHHHHHHH
T ss_conf ----------------------61267686532799987899999997------49987887543038986899999998
Q ss_pred CCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHC
Q ss_conf 58857777505302055322421277768830221011366358786336766665468543310005978999998516
Q gi|254780451|r 486 AGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG 565 (896)
Q Consensus 486 ~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG 565 (896)
+|++++|.++||.|.+||||+|+|+++.+. +++ ++|+|+||||+||||+....+|||||++|+|+||+|
T Consensus 310 ~G~~~~~~~aG~~i~~pgCg~C~G~~~~~~--------~ge---v~vsT~NRNF~GRmG~~~~~~yLaSP~~vaasAi~G 378 (380)
T cd01585 310 NGALADLLAAGARILESACGPCIGMGQAPP--------TGG---VSVRTFNRNFEGRSGTKDDLVYLASPEVAAAAALTG 378 (380)
T ss_pred CCCHHHHHHCCCEECCCCCHHHHCCCCCCC--------CCC---EEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHCC
T ss_conf 788878997697888874554338299899--------998---899730789876789988968977999999999554
Q ss_pred CC
Q ss_conf 12
Q gi|254780451|r 566 NV 567 (896)
Q Consensus 566 ~I 567 (896)
+|
T Consensus 379 ~I 380 (380)
T cd01585 379 VI 380 (380)
T ss_pred CC
T ss_conf 39
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=0 Score=864.37 Aligned_cols=379 Identities=31% Similarity=0.470 Sum_probs=330.8
Q ss_pred HHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52200000357999999999999971999999287898139986832110059988999899988754267899998774
Q gi|254780451|r 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQ 167 (896)
Q Consensus 88 Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~ 167 (896)
++++||.||.+|+-.| |+.-.+...||+|+ -+++||+++.. +....++..++++|.++
T Consensus 1 l~~~hD~t~p~a~~~~---~~~g~~~v~dp~kv------~~~~DH~vp~~-----~~~~a~~~~~~r~~a~~-------- 58 (382)
T cd01583 1 LHLVHDVTSPQAFEGL---REAGREKVWDPEKI------VAVFDHNVPTP-----DIKAAEQVKTLRKFAKE-------- 58 (382)
T ss_pred CCEEEECCHHHHHHHH---HHCCCCCCCCCCCE------EEECCCCCCCC-----CHHHHHHHHHHHHHHHH--------
T ss_conf 9235506279999999---98088656798777------89758898898-----98899999999999998--------
Q ss_pred HHCCCEEEECCC-CCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCC
Q ss_conf 214880786088-762167789863351131036886179830-132068876444520123203434899999707751
Q gi|254780451|r 168 KSFKNFRVVPPG-TGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPI 245 (896)
Q Consensus 168 ~~f~~~~v~pPG-~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~ 245 (896)
| +++++.+| .||||||++| ++++.|| ++|||||||||+||||+||||||++|++++|+++++
T Consensus 59 --~-gi~~~~~g~~GI~H~v~~E-------------~G~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~ 122 (382)
T cd01583 59 --F-GINFFDVGRQGICHVILPE-------------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKL 122 (382)
T ss_pred --H-CCCEECCCCCCEEEEEHHH-------------CCCCCCCCEEEECCCCCCCCCCCHHEEECCCHHHHHHHHCCCCE
T ss_conf --4-9743279997388578200-------------57557995798367676778730313866689999999812926
Q ss_pred EECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHH
Q ss_conf 41167289999976778644368899999998410221212799961550017875632120001003720377519989
Q gi|254780451|r 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRG 325 (896)
Q Consensus 246 ~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~ 325 (896)
||++||+|+|+|+|+|++||++|||||+|++.|+..|++||+|||+|+|+++||+++|||||||++|+||++||||+|++
T Consensus 123 ~~~vPetv~v~l~G~l~~gv~aKDliL~ii~~lg~~g~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~ 202 (382)
T cd01583 123 WFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDET 202 (382)
T ss_pred EEECCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHH
T ss_conf 73278589999956589998889999999987084766726999957540338988865565046001653567668758
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHH
Q ss_conf 99999863999889999998746410236767667886306999980314301226566564136777301166876640
Q gi|254780451|r 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEY 405 (896)
Q Consensus 326 T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~ 405 (896)
|++||+.++|.+ |+...+|++|.|+++++||||+|||+||+|++|+|+++++++..
T Consensus 203 t~~yl~~r~~~~---------------~~~~~~D~da~Y~~~i~iDls~leP~va~P~~P~n~~~v~~~~~--------- 258 (382)
T cd01583 203 TFEYLKGRGKAY---------------WKELKSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEG--------- 258 (382)
T ss_pred HHHHHHHCCCCC---------------CHHHCCCCCCCCCEEEEEEHHHCCEEECCCCCCCCEEECCCCCC---------
T ss_conf 999998565542---------------11104799985227999877768754328989441558510289---------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 01100232102457888887555445753104676545999877889998898649875867307970161899999998
Q gi|254780451|r 406 YKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
..|..++||||||++++++++||.+| +|+||+||||++++|||++|++++++
T Consensus 259 ----------------------~~Id~~~IGSCTngr~~Dl~~aA~iL------~g~kv~~~Vr~~v~PgS~~V~~~a~~ 310 (382)
T cd01583 259 ----------------------IKIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAEK 310 (382)
T ss_pred ----------------------CCCCEEEECCCCCCCCHHHHHHHHHH------CCCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf ----------------------73568996336689987999999986------37887886248861587899999998
Q ss_pred CCCHHHHHHHCCEECCCCCCCCCCC-CCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 5885777750530205532242127-776883022101136635878633676666546854331000597899999851
Q gi|254780451|r 486 AGLVEYLEALGFSLVGFGCTTCIGN-SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALA 564 (896)
Q Consensus 486 ~Gll~~L~~aGf~i~~~GCg~CiGn-sG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~Aia 564 (896)
+|++++|+++||.|.+||||+|+|+ .|.+.+ ++ ++++|+||||+||||+..+.+|||||++|+||||+
T Consensus 311 ~Gl~~~l~~aG~~i~~pgCg~C~G~~~g~l~~--------ge---~~vsT~NRNF~GR~G~~~a~~yLaSP~~vaAsAi~ 379 (382)
T cd01583 311 EGLIEIFIEAGAEVRPPGCGACLGGHMGVLAP--------GE---RCVSTSNRNFKGRMGSPGARIYLASPATAAASAIT 379 (382)
T ss_pred CCCHHHHHHCCCEECCCCCCCCCCCCCCCCCC--------CC---EEEEEECCCCCCCCCCCCCEEEECCHHHHHHHHHC
T ss_conf 77499999779789588460362809887999--------98---89984088987678999893898899999999846
Q ss_pred CCC
Q ss_conf 612
Q gi|254780451|r 565 GNV 567 (896)
Q Consensus 565 G~I 567 (896)
|+|
T Consensus 380 G~I 382 (382)
T cd01583 380 GEI 382 (382)
T ss_pred CCC
T ss_conf 539
No 22
>TIGR01343 hacA_fam homoaconitate hydratase family protein; InterPro: IPR006251 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry represents the large subunit of 3-isopropylmalate dehydratase (LeuC), as well as homoaconitase, certain aconitases and uncharacterised proteins, and is a subgroup of those represented in IPR012095. Homoaconitase, aconitase and 3-isopropylmalate dehydratase have similar overall structures and domain organisation . All are dehydratases that bind a [4Fe-4S]-cluster. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterised member is T. thermophilus homoaconitase, an enzyme of a non-aspartate pathway of lysine biosynthesis. Information about related proteins can be found at Protein of the Month: Aconitase .; GO: 0016836 hydro-lyase activity, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process.
Probab=100.00 E-value=0 Score=847.82 Aligned_cols=422 Identities=29% Similarity=0.438 Sum_probs=354.7
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHC
Q ss_conf 57999999986123554577766364532522000003579999999999999719999992878981399868321100
Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDY 138 (896)
Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~ 138 (896)
||.|++|-....- ..-.++-=|--..|.+++||-|+.-|+=.|.-+ --+.-.||+|| .+++||+|+.+.
T Consensus 1 TiaEKILs~~sg~--k~V~aGdli~a~iD~~m~~D~TaPlai~~L~e~---g~~~V~~Peri------~~~~DH~vPa~~ 69 (432)
T TIGR01343 1 TIAEKILSKKSGK--KEVYAGDLIVAEIDLAMVHDITAPLAIKALEEY---GIDKVFDPERI------VIVVDHAVPAKT 69 (432)
T ss_pred CCHHHHHHHHCCC--CEECCCCEEEEEEEEEEECCCCHHHHHHHHHHH---CCCCCCCCCCE------EEEECCCCCCCC
T ss_conf 9111334753688--702487668870204041056048999999983---57677588714------998438899643
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCEE-EECCC-CCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEEC
Q ss_conf 5998899989998875426789999-87742148807-86088-762167789863351131036886179830-13206
Q gi|254780451|r 139 SGNKDAVTRNKDLEYQRNEERYRFL-KWGQKSFKNFR-VVPPG-TGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGT 214 (896)
Q Consensus 139 ~g~~~a~~~n~~~e~~rN~Ery~Fl-kwa~~~f~~~~-v~pPG-~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGt 214 (896)
-.+ .|.++|+ +|+++ .+++ |+++| .||||||..| ++|+.|| ++||+
T Consensus 70 ---ik~------------A~~~k~~~efvkk--~Gi~~F~~~GreGI~HqvL~E-------------~glv~PG~~vvGa 119 (432)
T TIGR01343 70 ---IKA------------AEMQKLAREFVKK--KGIKYFFDVGREGICHQVLPE-------------EGLVKPGDLVVGA 119 (432)
T ss_pred ---HHH------------HHHHHHHHHHHHH--HCHHHCCCCCCCCCEEEEECC-------------CCEECCCCEEEEC
T ss_conf ---789------------9998999999986--160223778885416898326-------------8700678779934
Q ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 88764445201232034348999997077514116728999997677864436889999999841022121279996155
Q gi|254780451|r 215 DSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSG 294 (896)
Q Consensus 215 DSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~g 294 (896)
|||||||||||+||+|||+||.+.+++....||||||+|+|+|+|+|+||||||||||.+++.|+.+|++|+++||.|+.
T Consensus 120 DSHTCTyGA~GAFaTG~GsTD~A~a~A~Gk~W~rVPEs~~v~~~G~L~p~V~aKDviL~~I~~iG~DGAtY~a~Ef~Ge~ 199 (432)
T TIGR01343 120 DSHTCTYGALGAFATGVGSTDIAYAIATGKVWFRVPESIKVQLTGKLNPGVTAKDVILEVIGEIGVDGATYKAMEFHGET 199 (432)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCE
T ss_conf 73122345576541374458999999828610215718999988303899650366632226544787520689981732
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCC-CC--HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
Q ss_conf 0017875632120001003720377519989999998639-99--88999999874641023676766788630699998
Q gi|254780451|r 295 FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSG-RS--NSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLD 371 (896)
Q Consensus 295 i~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tG-R~--~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiD 371 (896)
+++|||++||||||||+|+|||+|||.|||+|++||+..| +. +|.+.. .+-|+...+||||+|.+++|||
T Consensus 200 ~~~~~~~~R~TlaNMAiEaGgKtGii~~De~T~~Y~~~~Gv~~~~dedi~~-------~~~~~v~~~DedA~Y~~e~EiD 272 (432)
T TIGR01343 200 VKNMDMEERLTLANMAIEAGGKTGIIEPDEKTIEYLKERGVAKESDEDIAK-------LKPFRVYKSDEDAEYAKEVEID 272 (432)
T ss_pred EEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCCHHHHCC-------CCCEEEECCCCCCCCCEEEEEE
T ss_conf 452664346679889998188314773672799999971787544023405-------7753885188886500489987
Q ss_pred CCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf 03143012265665641367773011668766400110023210245788888755544575310467654599987788
Q gi|254780451|r 372 LGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAG 451 (896)
Q Consensus 372 Ls~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAg 451 (896)
+|+|||.||+||.|||+-+++|+.. |-.|..+|||||||.+..|+..||.
T Consensus 273 ~~~~eP~va~Ph~vdNV~~vse~~G------------------------------~~~vdQvfIGsCTNGRl~DLr~AAk 322 (432)
T TIGR01343 273 ASQLEPVVAVPHNVDNVKPVSEVEG------------------------------RIEVDQVFIGSCTNGRLEDLRVAAK 322 (432)
T ss_pred EECCCCEECCCCCCCCCCCCCCCCC------------------------------CEEEEEEEEEECCCCCHHHHHHHHH
T ss_conf 1046843223777988731355678------------------------------6066058884023774678999999
Q ss_pred HHHHHHHHCCCC-CCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCC-CCCCCCCHHHHHCCCCCEEE
Q ss_conf 999889864987-5867307970161899999998588577775053020553224212-77768830221011366358
Q gi|254780451|r 452 LLARNAVRAGLK-SKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVV 529 (896)
Q Consensus 452 llAkkAv~~Glk-v~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiG-nsG~l~~~i~~~i~~~~l~~ 529 (896)
.| |.|...|+| |+++||++++|+||+|+.++.++||+++|.++|+.+..||||||+| ++|.|.|. +
T Consensus 323 iL-kaalkqGr~GV~~~VrliViPAS~~vy~qAL~eGli~~F~~AGa~v~~PgCGpClG~H~GVLA~G--------E--- 390 (432)
T TIGR01343 323 IL-KAALKQGRKGVAPDVRLIVIPASKAVYLQALKEGLIEIFVEAGAVVSTPGCGPCLGAHQGVLAPG--------E--- 390 (432)
T ss_pred HH-HHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHCCEEECCCCCCHHHHCCCCCCCCC--------C---
T ss_conf 99-99975367552788439998464689999850036889977792870888410220456642588--------7---
Q ss_pred EEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7863367666654685433100059789999985161222310023
Q gi|254780451|r 530 AGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896)
Q Consensus 530 ~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896)
+||||+||||+||||...+..|||||.+|||+|+.|+| +||
T Consensus 391 vCiSTsNRNF~GRMG~~~a~IYLASPa~aAAsAV~G~i-----a~P 431 (432)
T TIGR01343 391 VCISTSNRNFKGRMGDPNAEIYLASPATAAASAVKGYI-----ADP 431 (432)
T ss_pred EEECCCCCCCCCCCCCCCCCEEECCHHHHHHHHCCEEE-----ECC
T ss_conf 78615577887888885652250475686421110056-----388
No 23
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit; InterPro: IPR011826 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry represents the large subunit of 3-isopropylmalate dehydratase (LeuC), as well as homoaconitase enzymes, from prokaryotes. Homoaconitase, aconitase and 3-isopropylmalate dehydratase have similar overall structures and domain organisation . All are dehydratases that bind a [4Fe-4S]-cluster. Information about related proteins can be found at Protein of the Month: Aconitase .; GO: 0003861 3-isopropylmalate dehydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009098 leucine biosynthetic process.
Probab=100.00 E-value=0 Score=828.11 Aligned_cols=418 Identities=29% Similarity=0.450 Sum_probs=351.2
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHH----HCCCCHHHCCCCCCEEEEEECCC
Q ss_conf 57999999986123554577766364532522000003579999999999999----71999999287898139986832
Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIV----VLGGDPQNINPLVPVDLVIDHSL 134 (896)
Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~----~~g~dp~~inp~vp~dlviDHsv 134 (896)
+++|+++....-- .-.++.-|--++|-+++||-|+-+++ -+||+... ..-.+|+| +-++|||++
T Consensus 2 TL~EKILS~kvG~---~V~aGE~V~v~VD~am~hDGt~p~~i---~~l~~~g~rGG~~~v~~p~k------~v~~fDH~~ 69 (431)
T TIGR02086 2 TLAEKILSEKVGR---PVEAGEIVEVEVDLAMAHDGTGPLAI---KALRELGERGGMAKVEDPEK------IVIVFDHVV 69 (431)
T ss_pred CHHHHHHHHHCCC---CCCCCCEEEEECCEEEEECCCHHHHH---HHHHHHHHCCCCCCCCCCCE------EEEEEECCC
T ss_conf 6477888985679---87886579970259999648717899---99999973478676646864------899982688
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE-E
Q ss_conf 11005998899989998875426789999877421488078-608876216778986335113103688617983013-2
Q gi|254780451|r 135 IVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRV-VPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-V 212 (896)
Q Consensus 135 ~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v-~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl-V 212 (896)
+.-. -.-|-.+++.+||-| . +++.+ +--|.||||||.+| +|||.|+.+ |
T Consensus 70 P~~~--v~~A~~Q~~~REF~K------------~--~gI~~f~~~g~GIcHQ~L~E-------------~Gya~PG~vvv 120 (431)
T TIGR02086 70 PAPT--VEAAELQKEIREFAK------------R--HGIKVFFDVGEGICHQVLVE-------------KGYAEPGMVVV 120 (431)
T ss_pred CCCC--HHHHHHHHHHHHHHH------------H--CCCCEEEECCCEEEEEEEEE-------------CCCCCCCEEEE
T ss_conf 9965--677887789998887------------6--68705998798027788653-------------06247761899
Q ss_pred ECCCCCCCCCCCHHHHCCCCHHHHHH-HHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 06887644452012320343489999-97077514116728999997677864436889999999841022121279996
Q gi|254780451|r 213 GTDSHTTMINALGILGWGVGGIEAEA-AMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFF 291 (896)
Q Consensus 213 GtDSHT~~~galG~la~GVGg~eaea-~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~ 291 (896)
|+||||||+||+|+||+|+|+||++. +.+|+ +|++|||+|+|.|+|+|++||+||||+|+|++.|+..|.+|++||||
T Consensus 121 G~DSHT~T~GA~GAFA~GmGATDvA~a~~~G~-~W~~VPe~~~V~~~G~l~~~v~AKDv~L~~~~~lg~~gatY~a~E~~ 199 (431)
T TIGR02086 121 GADSHTCTSGALGAFATGMGATDVAIALATGK-TWLKVPESIKVVVEGKLEEGVTAKDVALEIVGELGADGATYMAIEFF 199 (431)
T ss_pred ECCCCCCHHHCHHHEEECCCHHHHHHHHHHCC-CEEECCEEEEEEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf 52677400000023042578689999998286-13645808999987216986022488989999848787640169870
Q ss_pred ECC-CCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 155-0017875632120001003720377519989999998639-99889999998746410236767667886306999
Q gi|254780451|r 292 GSG-FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSG-RSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMK 369 (896)
Q Consensus 292 G~g-i~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tG-R~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vie 369 (896)
|.- +++|++++||||||||+|+|||+|+|+||++|++|||... ++++.++.+.+ ||...+|||+.|++++|
T Consensus 200 g~~G~e~m~~~~RlTl~NmavE~GAK~g~~~p~e~~~eY~k~~~g~~Dediakl~e-------~r~~~~d~~a~Y~~eie 272 (431)
T TIGR02086 200 GLPGIEAMSVDERLTLCNMAVEAGAKAGLVEPDEETLEYLKKRRGEEDEDIAKLKE-------FRILKPDPDAKYEDEIE 272 (431)
T ss_pred CCCCCCCCCCCCCEEEECCCCEECCCEEEECCCCCHHHHHHCCCCCCHHHHHHHCC-------CCEEECCCCCCCCEEEE
T ss_conf 67783015777631102000000562464358873345653047884246765311-------54110488886121789
Q ss_pred EECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 98031430122656656413677730116687664001100232102457888887555445753104676545999877
Q gi|254780451|r 370 LDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIG 449 (896)
Q Consensus 370 iDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~mia 449 (896)
||||+|||+||.||+|||+.+|++|... .. .|...|||||||.+..++.+|
T Consensus 273 iD~~~LeP~Va~Ph~VDNV~~V~~VeGe-----------k~------------------~iDqVFiGSCTNGR~~Dl~~A 323 (431)
T TIGR02086 273 IDLSDLEPLVAVPHSVDNVKPVSDVEGE-----------KT------------------KIDQVFIGSCTNGRLEDLRIA 323 (431)
T ss_pred EECCCCCCEEECCCCCCCCEECCEEECC-----------EE------------------EEEEEEECCEECCCHHHHHHH
T ss_conf 8636888720048748777351004075-----------55------------------884789702003408999999
Q ss_pred HHHHHHHHHHCCCC-CCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCC-CCCCCCCHHHHHCCCCCE
Q ss_conf 88999889864987-5867307970161899999998588577775053020553224212-777688302210113663
Q gi|254780451|r 450 AGLLARNAVRAGLK-SKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSL 527 (896)
Q Consensus 450 AgllAkkAv~~Glk-v~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiG-nsG~l~~~i~~~i~~~~l 527 (896)
|..| +|++ +|||||++++|+|++|.+.+.++|+++.|.+||+.|..||||||+| |.|.|.+ ++
T Consensus 324 aeiL------~g~~GvH~dVR~iV~PAS~~V~~~A~e~G~i~~lv~aGa~i~~PGCGPCLG~HmGVLg~--------gE- 388 (431)
T TIGR02086 324 AEIL------KGRRGVHPDVRLIVVPASRKVYEKALEEGIIETLVEAGAIICPPGCGPCLGAHMGVLGD--------GE- 388 (431)
T ss_pred HHHH------CCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEECC--------CC-
T ss_conf 9984------13788576303898201478899998741788887493588072387434331567268--------98-
Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 5878633676666546854331000597899999851612223100235
Q gi|254780451|r 528 VVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPI 576 (896)
Q Consensus 528 ~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dpl 576 (896)
++|+++||||+||||...+.+|||||.++|++|+.|.| |||.
T Consensus 389 --v~~ST~NRNF~GRMG~~~a~IYLASP~vAA~SA~~G~i-----T~P~ 430 (431)
T TIGR02086 389 --VCVSTTNRNFKGRMGSPDAEIYLASPAVAAASAVEGYI-----TDPR 430 (431)
T ss_pred --EEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCC-----CCCC
T ss_conf --89973478888888687662781675898885632211-----1889
No 24
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=0 Score=786.76 Aligned_cols=359 Identities=30% Similarity=0.476 Sum_probs=311.1
Q ss_pred HHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22000003579999999999999719999992878981399868321100599889998999887542678999987742
Q gi|254780451|r 89 VLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQK 168 (896)
Q Consensus 89 v~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~ 168 (896)
||+||.||-.| ++|..|+ .+.-.||+| +-+++||.++... .++.+.+++++--.+
T Consensus 2 ~m~hd~t~p~a-~~~~~~g---~~~v~~p~~------~~~~~DH~~p~~~---------------~~~~~~~~~~~~~a~ 56 (363)
T cd01582 2 CMTHDNSWPVA-LKFMSIG---ATKIHNPDQ------IVMTLDHDVQNKS---------------EKNLKKYKNIESFAK 56 (363)
T ss_pred CCCCCCCHHHH-HHHHHHC---CCCCCCCCC------EEEEECCCCCCCC---------------HHHHHHHHHHHHHHH
T ss_conf 56323768999-9999828---995669887------7897188999997---------------340999999999999
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE-EEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEE
Q ss_conf 148807860887621677898633511310368861798301-3206887644452012320343489999970775141
Q gi|254780451|r 169 SFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISM 247 (896)
Q Consensus 169 ~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdt-lVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~ 247 (896)
++ |+.+++||.||||||++| +++++||+ +|||||||||+||||+||||||++|++++|+++++||
T Consensus 57 ~~-gi~~~~~g~GI~H~v~~E-------------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~l~tg~~~~ 122 (363)
T cd01582 57 KH-GIDFYPAGRGIGHQIMIE-------------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWW 122 (363)
T ss_pred HC-CCCEECCCCCEEEEECCC-------------CCCCCCCCEEECCCCCCCCCCHHHHHEECCCHHHHHHHHHCCCEEE
T ss_conf 82-997668999758677200-------------3842799779807655576643676336737999999981392632
Q ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH
Q ss_conf 16728999997677864436889999999841022121279996155001787563212000100372037751998999
Q gi|254780451|r 248 LLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI 327 (896)
Q Consensus 248 ~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~ 327 (896)
++||+|+|+|+|+|++||++|||||+|++.|+..|++||+|||+|||+++||+++|+|||||++|+||++||||+|+++
T Consensus 123 ~vPe~v~V~l~G~l~~gV~~kDliL~i~~~l~~~g~~~~~vEf~G~~v~~Ls~~~R~ti~NMa~E~GA~~gi~~~D~~~- 201 (363)
T cd01582 123 QIPPVAKVELKGQLPKGVTGKDVIVALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTDAKH- 201 (363)
T ss_pred CCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHH-
T ss_conf 0895899999721799976889999999996216766559999744033178777778977657655366634777422-
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCC
Q ss_conf 99986399988999999874641023676766788630699998031430122656656413677730116687664001
Q gi|254780451|r 328 DYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYK 407 (896)
Q Consensus 328 ~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~ 407 (896)
++||||+|+|+||+|++|+++.+++++..
T Consensus 202 ----------------------------------------~~iDls~leP~va~P~~~~~~~~~~~~~~----------- 230 (363)
T cd01582 202 ----------------------------------------LILDLSTLSPYVSGPNSVKVSTPLKELEA----------- 230 (363)
T ss_pred ----------------------------------------CCCCHHHCCCEECCCCCCCCCCCHHHHCC-----------
T ss_conf ----------------------------------------03778889616159998556883466320-----------
Q ss_pred CHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCEEEEECCCHHHHHHHHHC
Q ss_conf 1002321024578888875554457531046765459998778899988986498-758673079701618999999985
Q gi|254780451|r 408 KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGL-KSKPWVKTSCAPGSQVSYEYLVQA 486 (896)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Gl-kv~p~Vkt~l~PGS~~V~~~L~~~ 486 (896)
.+..|..++||||||+++++++.||.+|.++.+.+++ +|+||||++++|||++|+.+++++
T Consensus 231 ------------------~~i~Id~a~IGSCTNgr~eDl~~AA~iL~g~~~~~~~~~v~p~Vr~~v~PgS~~V~~~a~~~ 292 (363)
T cd01582 231 ------------------QNIKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKN 292 (363)
T ss_pred ------------------CCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEECCCHHHHHHHHHC
T ss_conf ------------------36732479997579999889999999998655403785018981499843848889999987
Q ss_pred CCHHHHHHHCCEECCCCCCCCCCC-CCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHC
Q ss_conf 885777750530205532242127-7768830221011366358786336766665468543310005978999998516
Q gi|254780451|r 487 GLVEYLEALGFSLVGFGCTTCIGN-SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG 565 (896)
Q Consensus 487 Gll~~L~~aGf~i~~~GCg~CiGn-sG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG 565 (896)
|++++|+++||.|.+||||+|+|+ +|++.+ ++ ++++|+||||+||||+....+|||||++|+||||+|
T Consensus 293 Gl~~~f~~aGa~i~~pgCg~C~G~~~g~l~~--------ge---~~isT~NRNF~GR~G~~~a~~yLaSP~~vaAsAi~G 361 (363)
T cd01582 293 GDWQTLLEAGATPLPAGCGPCIGLGQGLLEP--------GE---VGISATNRNFKGRMGSTEALAYLASPAVVAASAISG 361 (363)
T ss_pred CCHHHHHHCCCEECCCCCHHHHCCCCCCCCC--------CC---EEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHCC
T ss_conf 6098999879889888015100859987999--------98---899820889876789988818989999999999664
Q ss_pred CC
Q ss_conf 12
Q gi|254780451|r 566 NV 567 (896)
Q Consensus 566 ~I 567 (896)
+|
T Consensus 362 ~I 363 (363)
T cd01582 362 KI 363 (363)
T ss_pred CC
T ss_conf 49
No 25
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=777.37 Aligned_cols=412 Identities=29% Similarity=0.452 Sum_probs=344.2
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHH
Q ss_conf 65799999998612355457776636453252200000357999999999999971999999287898139986832110
Q gi|254780451|r 58 CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVD 137 (896)
Q Consensus 58 ~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd 137 (896)
.++.++++..+.-- ....++.-+-.++++++.||-|+-.|+ ..||++-. .-.+|++ +-+++||.|..+
T Consensus 3 ~Tl~eKI~~~h~~~--~~~~~G~~~~~~iD~~l~HdvTsP~a~---~~lr~~g~-kV~~p~k------~~~~~DH~vPt~ 70 (423)
T COG0065 3 KTLYEKILDAHVGK--EEVGAGETVLLYIDLHLVHDVTSPQAF---EGLREAGR-KVRDPEK------TVATFDHNVPTP 70 (423)
T ss_pred CCHHHHHHHHHCCC--CCCCCCCCEEEEEEEEEEECCCCHHHH---HHHHHHCC-CCCCCCC------EEEEECCCCCCC
T ss_conf 43899999874165--557899837999402545336548999---99998398-1247351------699704779985
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-EEEECCC-CCCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEEC
Q ss_conf 05998899989998875426789999877421488-0786088-762167789863351131036886179830-13206
Q gi|254780451|r 138 YSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKN-FRVVPPG-TGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGT 214 (896)
Q Consensus 138 ~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~-~~v~pPG-~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVGt 214 (896)
. .++. ++..++++|.+ .| + ..+.+-| .||||||..| +|++.|| ++||.
T Consensus 71 ~---~~~a--~~~~~lr~~~k----------e~-Gi~~~~~~g~~GI~H~v~pE-------------~G~~~PG~~Iv~g 121 (423)
T COG0065 71 D---IKAA--EQQKELRENAK----------EF-GIVNFYDVGDQGIVHQVGPE-------------QGLTLPGMTIVGG 121 (423)
T ss_pred C---HHHH--HHHHHHHHHHH----------HH-CCEEEECCCCCCEEEEEECC-------------CCCCCCCCEEEEC
T ss_conf 5---7789--99999999999----------84-99045037888577897122-------------2666898689942
Q ss_pred CCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 88764445201232034348999997077514116728999997677864436889999999841022121279996155
Q gi|254780451|r 215 DSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSG 294 (896)
Q Consensus 215 DSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~g 294 (896)
||||||+||||+||+|+|++|++++|+.|++|+++||+++|+++|+|++|||||||||+|++.++..|++|+++||+|+.
T Consensus 122 DSHT~T~GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~G~t~~aiEf~Ge~ 201 (423)
T COG0065 122 DSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEA 201 (423)
T ss_pred CCCCCCCHHHHHHHCCCCHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 66764442357651076689999999819564545614899993425899539999999999856387635899996554
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 00178756321200010037203775199899999986399988999999874641023676766788630699998031
Q gi|254780451|r 295 FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGN 374 (896)
Q Consensus 295 i~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ 374 (896)
+++|||++|||||||++|+||++|+|+||++|++||+ +|.++...|+...+|+||+|+++++||+|+
T Consensus 202 i~~lsme~RmTicNMaIE~GAkaGii~pDe~T~~Y~k-------------~~~~a~~~~~~l~sD~dA~y~~~v~~d~s~ 268 (423)
T COG0065 202 IRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLK-------------EWDGAVAYWKTLKSDEDAVYDKVVELDASD 268 (423)
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHH-------------HHHCCCCCCCEECCCCCCCEEEEEEEECCC
T ss_conf 2328922210053554652662202477676899999-------------874122455040379997035899988123
Q ss_pred CCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 43012265665641367773011668766400110023210245788888755544575310467654599987788999
Q gi|254780451|r 375 VSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLA 454 (896)
Q Consensus 375 ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllA 454 (896)
|+|+|+||++|+|+++++++...+ ..|...+||||||++..++.+||.+|
T Consensus 269 leP~Va~p~~p~nv~~v~e~~~~~-----------------------------i~iDqVFIGSCTNgRieDLr~AA~Il- 318 (423)
T COG0065 269 LEPQVAWPTNPDNVVPVSEVEPDP-----------------------------IKIDQVFIGSCTNGRIEDLRAAAEIL- 318 (423)
T ss_pred CCCEEECCCCCCCCEECCCCCCCC-----------------------------EEEEEEEEECCCCCCHHHHHHHHHHH-
T ss_conf 771144797702110644446886-----------------------------15345999566775579999999996-
Q ss_pred HHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCC-CCCCCCHHHHHCCCCCEEEEEEE
Q ss_conf 88986498758673079701618999999985885777750530205532242127-77688302210113663587863
Q gi|254780451|r 455 RNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGN-SGALKKEISEVIHQKSLVVAGVL 533 (896)
Q Consensus 455 kkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGn-sG~l~~~i~~~i~~~~l~~~sV~ 533 (896)
+|+|++++||++++|||+.|+++++++||+++|.+|||.|..||||||+|+ .|.|.+. + .+++
T Consensus 319 -----kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gvL~~g--------E---~c~S 382 (423)
T COG0065 319 -----KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGVLGPG--------E---RCAS 382 (423)
T ss_pred -----CCCCCCCCCEEEEECCCHHHHHHHHHCCHHHHHHHCCCEECCCCCCCCCCCCCCCCCCC--------C---EEEE
T ss_conf -----36766888159996596999999998067999996690884798740205598737999--------7---7853
Q ss_pred CCCCCCCCCCC-CCCCCEEECCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 36766665468-5433100059789999985161222310023
Q gi|254780451|r 534 SGNRNFEGRIS-PDVEANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896)
Q Consensus 534 SgNRNFeGR~~-p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896)
++||||+|||| |..+ .||+||++++|+|+.|.| +||
T Consensus 383 TSNRNF~GRqG~~~a~-~yL~SPA~AAAaAv~G~i-----~dp 419 (423)
T COG0065 383 TSNRNFEGRQGSPGAR-TYLASPAMAAAAAVEGEI-----VDP 419 (423)
T ss_pred CCCCCCCCCCCCCCCE-EEECCHHHHHHHHHCCEE-----CCH
T ss_conf 2688877667999875-884598999998850785-----673
No 26
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=0 Score=748.66 Aligned_cols=407 Identities=22% Similarity=0.310 Sum_probs=313.3
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCC
Q ss_conf 79999999861235545777663645325220000035799999999999997199999928789813998683211005
Q gi|254780451|r 60 VTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYS 139 (896)
Q Consensus 60 ~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~ 139 (896)
++|+++..+.. ...-+++..|-..++.+++||.||.+++..|..| .....||++ +-+++||.+++..
T Consensus 1 i~EKIla~~~g--~~~V~~Ge~v~~~vD~~m~hD~t~p~~~~~~~~~----g~~~~~~~~------~v~~~dH~~p~~~- 67 (436)
T cd01581 1 LAQKIVGRACG--VKGVRPGTYCEPKMTTVGSQDTTGPMTRDELKEL----ACLGFSADL------VMQSFCHTAAYPK- 67 (436)
T ss_pred CCHHHHHHHHC--CCCCCCCCEEEEECCEEEEECCCHHHHHHHHHHH----CCCCCCCCC------EEEECCCCCCCCC-
T ss_conf 90899998609--9983699989984788854047548899999980----895558875------6786377888998-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE-EECCCC
Q ss_conf 998899989998875426789999-877421488078608876216778986335113103688617983013-206887
Q gi|254780451|r 140 GNKDAVTRNKDLEYQRNEERYRFL-KWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGTDSH 217 (896)
Q Consensus 140 g~~~a~~~n~~~e~~rN~Ery~Fl-kwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl-VGtDSH 217 (896)
.. +.+.++++ +|+++ + +..++.||.|||||| || +++.||++ ||+|||
T Consensus 68 --~~------------~~~~~~~~~~f~~~-~-g~~~~~~g~GIcH~v-l~--------------~~~~PG~~ivG~DSH 116 (436)
T cd01581 68 --PV------------DVKTHRTLPDFISN-R-GGVALRPGDGVIHSW-LN--------------RMLLPDTVGTGGDSH 116 (436)
T ss_pred --HH------------HHHHHHHHHHHHHH-C-CCCCCCCCCCEEEEE-EC--------------CCCCCCCEEEEECCC
T ss_conf --78------------89999999999998-0-986448999636411-01--------------664799369834577
Q ss_pred CCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC------------CCC
Q ss_conf 64445201232034348999997077514116728999997677864436889999999841022------------121
Q gi|254780451|r 218 TTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEG------------VVS 285 (896)
Q Consensus 218 T~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~G------------vvg 285 (896)
|||++|+ |||+|+.|++.+|+++++|++|||+|+|+|+|+|++||++|||||+|+..+...| ..|
T Consensus 117 T~~~~g~---a~g~G~~~~a~a~atG~~w~~vPeti~v~l~G~l~~gv~aKDvil~i~~~~~~~~~~~~~~~~~~~~f~G 193 (436)
T cd01581 117 TRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIQQGLLTVEKKGKKNVFNG 193 (436)
T ss_pred CCCCCCE---EECCCHHHHHHHHHCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCE
T ss_conf 8887681---2355489999999617167747978999998647999887789999888875312056411476322232
Q ss_pred EEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH-HHHHHCCCCHHHHHHHHHHHHHH---------HCCC-
Q ss_conf 279996155001787563212000100372037751998999-99986399988999999874641---------0236-
Q gi|254780451|r 286 KFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTI-DYLRLSGRSNSRVDLVEAYTKVQ---------GMWR- 354 (896)
Q Consensus 286 k~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~-~YL~~tGR~~~~v~lve~Y~ka~---------~l~~- 354 (896)
+++|| +|+++|||++|||||||++|+|||+|+||+|++|+ +||+.+... .+..+.+.|..++ .-|.
T Consensus 194 ~~ie~--~Gv~~Ls~~~R~Ti~NMaiE~GAk~gi~~~D~~T~~~Yl~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 270 (436)
T cd01581 194 RILEI--EGLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVL-MKIMIANGYDDARTLLRRIIAMEEWLA 270 (436)
T ss_pred EEEEE--CCCCCCCHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHHHHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 68996--267777865665110501553662323616828899999852356-677665056525567766567898850
Q ss_pred ---CCCCCCCCCCCEEEEEECCCC-CCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCE
Q ss_conf ---767667886306999980314-3012265665641367773011668766400110023210245788888755544
Q gi|254780451|r 355 ---EDIDYEKVAFTKKMKLDLGNV-SPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDV 430 (896)
Q Consensus 355 ---~~~~d~~a~Y~~vieiDLs~i-eP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~V 430 (896)
...+|++|+|+++++||||+| ||+||+|++|+|+.+++++... .|
T Consensus 271 ~~~~~~~D~da~Y~~~i~iDls~l~EP~vA~P~~pdnv~~v~e~~g~-------------------------------~I 319 (436)
T cd01581 271 NPPLLEPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAGK-------------------------------KI 319 (436)
T ss_pred CCCCCCCCCCCCCCEEEEEEHHHCCCCCCCCCCCCHHCCCHHHHCCC-------------------------------CC
T ss_conf 87642079999753189950787767756899981110342443388-------------------------------54
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCC
Q ss_conf 57531046765459998778899988986498758673079701618999999985885777750530205532242127
Q gi|254780451|r 431 AIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGN 510 (896)
Q Consensus 431 vIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGn 510 (896)
..++|||||| +..++..||.+| +|+|+++ |+++++|||++|+++++++|++++|.++||.|.+||||+|+||
T Consensus 320 D~vfIGSCT~-r~~Dl~~AA~iL------kg~k~~~-vr~~V~PgS~~V~~~a~~~Gl~~~f~~AGa~v~~pgCg~CiG~ 391 (436)
T cd01581 320 DEVFIGSCMT-NIGHFRAAAKIL------RGKEFKP-TRLWVAPPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLCMGN 391 (436)
T ss_pred CEEEEECCCC-CHHHHHHHHHHH------HCCCCCC-CCEEEECCCHHHHHHHHHCCHHHHHHHCCCEECCCCCHHHHCC
T ss_conf 0224412578-826899999998------1677788-6589979979999999985819899966969878761542480
Q ss_pred CCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC
Q ss_conf 776883022101136635878633676666546854331000597899999851612
Q gi|254780451|r 511 SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 (896)
Q Consensus 511 sG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I 567 (896)
.+.+. +++ ++++|+||||+||||+..+ +|||||++|+||||+|+|
T Consensus 392 ~~~~~--------~ge---~~iSTsNRNF~GRmG~~a~-vyLaSP~~vAAsAi~G~I 436 (436)
T cd01581 392 QARVA--------DGA---TVFSTSTRNFDNRVGKGAE-VYLGSAELAAVCALLGRI 436 (436)
T ss_pred CCCCC--------CCC---EEEEEECCCCCCCCCCCCC-EEECCHHHHHHHHHCCCC
T ss_conf 88689--------999---8997228898988999984-897899999999951729
No 27
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit; InterPro: IPR004430 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . Members of this entry are 3-isopropylmalate dehydratase, large subunit, or the large subunit domain of single-chain forms. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases (4.2.1 from EC) and bind a [4Fe-4S]-cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The archaeal leuC-like proteins are not included in group.; GO: 0003861 3-isopropylmalate dehydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=100.00 E-value=0 Score=737.16 Aligned_cols=452 Identities=26% Similarity=0.376 Sum_probs=374.3
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHC
Q ss_conf 57999999986123554577766364532522000003579999999999999719999992878981399868321100
Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDY 138 (896)
Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~ 138 (896)
++-|+.-.+|.=. ..+ +.---+|.+|=|.|.-|.==|. ..||. .|..-.+++--. =.+||+|....
T Consensus 4 TlyeK~fD~HvV~---~~E-~~~~LLYIdrHLvHEVTSPQAF---eGLr~----~gR~VR~~~~Tf---ATmDHni~T~~ 69 (472)
T TIGR00170 4 TLYEKLFDAHVVY---EAE-GETPLLYIDRHLVHEVTSPQAF---EGLRQ----AGRKVRRVDKTF---ATMDHNIPTQS 69 (472)
T ss_pred CHHHHHCCCEEEE---CCC-CCCCCEEEECEEEEECCCCHHH---HHHHH----CCCCCCCCCCCE---EEECCCCCCCC
T ss_conf 2111213530577---267-8885145406155401670324---79986----778015468703---23126557554
Q ss_pred CCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE-
Q ss_conf 5998899989--------9988754267899998774214880786088762167789863351131036886179830-
Q gi|254780451|r 139 SGNKDAVTRN--------KDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD- 209 (896)
Q Consensus 139 ~g~~~a~~~n--------~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd- 209 (896)
-..-.++..| +-.|.+||-+.| +-+ =|...-+-.||+|-| -|++|+-.||
T Consensus 70 rknfkslD~~~~~~~a~~Qv~~L~~N~k~f-----Gv~---l~dl~~~~QGIVHv~-------------GPE~GlTLPG~ 128 (472)
T TIGR00170 70 RKNFKSLDVNIKDEVAKIQVKELEKNCKEF-----GVK---LFDLSSAEQGIVHVV-------------GPEQGLTLPGM 128 (472)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCE---EECCCCCCCCEEEEE-------------CCCCCCCCCCC
T ss_conf 310112001331135789999987557871-----932---105778887469986-------------78888538887
Q ss_pred EEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 13206887644452012320343489999970775141167289999976778644368899999998410221212799
Q gi|254780451|r 210 TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVE 289 (896)
Q Consensus 210 tlVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vE 289 (896)
|+||.||||.||||||+||||+|.+|+|||+++|++|.--|++++|++.|+|.+|||||||||+|++..+..|++|++||
T Consensus 129 TiVCGDSHTsTHGAFGaLAFGIGTSEVEHVLaTQTl~Q~r~K~m~i~V~Gk~~~GiTaKD~iLaiIGk~g~agGTG~ViE 208 (472)
T TIGR00170 129 TIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKDIILAIIGKTGVAGGTGHVIE 208 (472)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 58858876302345566651576203233234435642688505899855766888456666654333125887506884
Q ss_pred EEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
Q ss_conf 96155001787563212000100372037751998999999863999889999998746410236767667886306999
Q gi|254780451|r 290 FFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMK 369 (896)
Q Consensus 290 f~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vie 369 (896)
|+|+.++.|||++|||+||||+|+||++|++.|||.|++|+| +|.. ..--++|-||+..|+.++.|++|.||.+|.
T Consensus 209 f~GEai~~lsMe~RMt~CNMaIE~GArAGliaPDEtTF~Y~K--~R~~--aPKG~ef~~AVayWKtL~tD~gA~fD~~i~ 284 (472)
T TIGR00170 209 FCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEYVK--GRPH--APKGKEFDKAVAYWKTLKTDEGAKFDTVIT 284 (472)
T ss_pred CCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCC--CCCC--CCCCCCHHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 010686413702100144577886322276288402466207--6888--888776789999875336988872363688
Q ss_pred EECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 98031430122656656413677730116687664001100232102457888887555445753104676545999877
Q gi|254780451|r 370 LDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIG 449 (896)
Q Consensus 370 iDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~mia 449 (896)
||..+|.|+|+|..+|++++||.+--.++....++..++.......|+.......|++..|.--|||||||++..++.-|
T Consensus 285 l~a~~i~P~vTWGtnPg~vl~v~~~vP~P~~~~dp~~k~~aerAl~YmGL~p~~~l~~ikvd~VFIGSCTNsRieDLR~A 364 (472)
T TIGR00170 285 LEAEDISPQVTWGTNPGQVLPVNEEVPDPKSFADPVKKASAERALAYMGLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAA 364 (472)
T ss_pred ECCEEECCEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHH
T ss_conf 52513155465378998267337888775123784457789999997088988861037750568724556057899999
Q ss_pred HHHHHHHHHHCCCCCCCCCE-EEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEE
Q ss_conf 88999889864987586730-79701618999999985885777750530205532242127776883022101136635
Q gi|254780451|r 450 AGLLARNAVRAGLKSKPWVK-TSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLV 528 (896)
Q Consensus 450 AgllAkkAv~~Glkv~p~Vk-t~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~ 528 (896)
|.+ .||+|+++.|| .+++|||..|+.++|++||+++|.+|||.|..+||++|+||+-..-++ .+ .
T Consensus 365 A~~------~kG~K~A~~v~~alVVPGSg~VK~QAE~EGLDkIF~eAGfEWR~~GCSmCL~MN~D~l~~-------~E-R 430 (472)
T TIGR00170 365 AAV------VKGRKVADNVKLALVVPGSGLVKKQAEKEGLDKIFIEAGFEWREPGCSMCLGMNNDVLDE-------GE-R 430 (472)
T ss_pred HHH------HCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCCEECCCCCCCCCC-------CC-C
T ss_conf 998------478101543758989578823678873316217888717000146772430577675865-------55-4
Q ss_pred EEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCC
Q ss_conf 87863367666654685433100059789999985161
Q gi|254780451|r 529 VAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN 566 (896)
Q Consensus 529 ~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~ 566 (896)
|+| ++|||||||+|...|+ +|+||+|++|.||+|+
T Consensus 431 CAS--TSNRNFEGRQG~~~RT-HLvSPAMAAaAai~Gh 465 (472)
T TIGR00170 431 CAS--TSNRNFEGRQGRGGRT-HLVSPAMAAAAAIAGH 465 (472)
T ss_pred CCC--CCCCCCCCCCCCCCCC-CCCCHHHHHHHHHCCC
T ss_conf 214--5677765536888663-5440899989861576
No 28
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit; InterPro: IPR011823 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry represents the large subunit of 3-isopropylmalate dehydratase (LeuC) from prokaryotes. Homoaconitase, aconitase and 3-isopropylmalate dehydratase have similar overall structures and domain organisation . All are dehydratases that bind a [4Fe-4S]-cluster. Information about related proteins can be found at Protein of the Month: Aconitase .; GO: 0003861 3-isopropylmalate dehydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009098 leucine biosynthetic process.
Probab=100.00 E-value=0 Score=684.03 Aligned_cols=405 Identities=30% Similarity=0.441 Sum_probs=341.7
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHC
Q ss_conf 57999999986123554577766364532522000003579999999999999719999992878981399868321100
Q gi|254780451|r 59 TVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDY 138 (896)
Q Consensus 59 ~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~ 138 (896)
+++++++..++.- ..-+++.=|-..+|=++--|.|.=-|+-.|- +.-.+.-.||+| +.||.||--+
T Consensus 2 T~~~KILa~~AG~--~~V~pg~l~~~~~D~~lgND~TtP~Aik~Fk---~~g~~KV~d~~~------~~~V~DHFtP--- 67 (419)
T TIGR02083 2 TLAEKILADKAGL--EEVEPGELILAKLDLVLGNDVTTPLAIKAFK---EIGVKKVFDKDK------VALVLDHFTP--- 67 (419)
T ss_pred CHHHHHHHHHCCC--CCCCCCCEEEEECCEEEECCCCCHHHHHHHH---HCCCEECCCCCC------EEEEECCCCC---
T ss_conf 4245678644251--4457565776512410206665157999898---606500104661------7897157898---
Q ss_pred CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHCCCEEEECCCCCEEEEEE-EEEE
Q ss_conf 59988---9998999887542678999987742148807860887-62167789863351131036886179830-1320
Q gi|254780451|r 139 SGNKD---AVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT-GICHQINLEYLGQSVWTKNENGENIAYPD-TCVG 213 (896)
Q Consensus 139 ~g~~~---a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~-GI~HQvnlE~la~vv~~~~~~~~~~a~Pd-tlVG 213 (896)
+.| |.+-.+.++|.|..+--.|.. + |+ ||=|-+ .|++|++.|| .+||
T Consensus 68 --NKDIK~A~~~k~~R~FA~~~~I~~ffe--------~-----G~~G~EH~L-------------lPE~G~v~~GdliiG 119 (419)
T TIGR02083 68 --NKDIKAAEQCKMIREFAKEQGIEKFFE--------I-----GNMGVEHAL-------------LPEKGLVLPGDLIIG 119 (419)
T ss_pred --CHHHHHHHHHHHHHHHHHHCCCHHHHC--------C-----CCCCEEEEE-------------CCCCCCEEECCEEEE
T ss_conf --723567898899887665314223311--------5-----762135774-------------377773132667882
Q ss_pred CCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 68876444520123203434899999707751411672899999767786443688999999984102212127999615
Q gi|254780451|r 214 TDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGS 293 (896)
Q Consensus 214 tDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~ 293 (896)
+|||||||||||+|++|||++|.+..|+....||||||.|+|.|.|++++|||+|||||++++.++.+|+.+|.+||.|+
T Consensus 120 ADSHTCTYGALGaF~TGVGSTD~Av~~~~G~aWF~VP~~IK~~l~G~~~~~V~~KD~iL~~Ig~iGVdGA~YK~~Ef~G~ 199 (419)
T TIGR02083 120 ADSHTCTYGALGAFATGVGSTDLAVGMATGKAWFKVPEAIKFVLKGKLKPWVTGKDLILHIIGKIGVDGALYKSMEFSGE 199 (419)
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 67652101200000046552777877651520463471689887146200022136777768773457310245664160
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 50017875632120001003720377519989999998639998899999987464102367676678863069999803
Q gi|254780451|r 294 GFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLG 373 (896)
Q Consensus 294 gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs 373 (896)
|++.|||++|+||+|||+|+||++|+||+|++|++|.| ||..+..+ -..+|+||+|.+++|+|||
T Consensus 200 g~~~ls~d~R~ti~NMAIEAGaK~Gi~~vD~~TI~Y~k--gR~~~~~~-------------~y~~D~DA~Y~~~~e~Dls 264 (419)
T TIGR02083 200 GLKELSMDDRLTIANMAIEAGAKTGIFEVDEKTIEYVK--GRAKRELK-------------IYKADEDAKYERVIEIDLS 264 (419)
T ss_pred HHEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHC--CCCHHHHH-------------CCCCCCCCCEEEEEEEEHH
T ss_conf 02003105520031345540666687562202321001--45401332-------------1477666414456552330
Q ss_pred CCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 14301226566564136777301166876640011002321024578888875554457531046765459998778899
Q gi|254780451|r 374 NVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLL 453 (896)
Q Consensus 374 ~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgll 453 (896)
+|+|+||.||-|+|..+++++... .- .|..+-||||||.+-.++.+||.+|
T Consensus 265 ~~~p~VAfPhLP~Nt~~~~~~~k~-----------~i------------------kiDQvVIGSCTNGRleDlr~AA~iL 315 (419)
T TIGR02083 265 ELEPQVAFPHLPENTKEIDEAGKE-----------EI------------------KIDQVVIGSCTNGRLEDLRLAAEIL 315 (419)
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHH-----------EE------------------EEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 148610356685323325533111-----------12------------------2104898146676078999999985
Q ss_pred HHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCC-CCCCCCCHHHHHCCCCCEEEEEE
Q ss_conf 98898649875867307970161899999998588577775053020553224212-77768830221011366358786
Q gi|254780451|r 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAGV 532 (896)
Q Consensus 454 AkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiG-nsG~l~~~i~~~i~~~~l~~~sV 532 (896)
+|++|+||||+++.|||+.|+..+.+.||+++|.+||+.+-.|.||||+| +.|-|.. ++ .+|
T Consensus 316 ------~g~~v~~~~R~Ii~P~~~~vY~~a~~~Gl~~~Fi~AG~~vstPTCGPCLGGHMGiLA~--------gE---~a~ 378 (419)
T TIGR02083 316 ------KGKKVAKDVRLIIIPGSQNVYLEALKEGLLEIFIEAGAVVSTPTCGPCLGGHMGILAE--------GE---RAV 378 (419)
T ss_pred ------CCCEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHCCC--------CC---EEE
T ss_conf ------4871357620899639817999998520688788678666676888767630210107--------87---467
Q ss_pred ECCCCCCCCCC-CCCCCCEEECCHHHHHHHHHHCCC
Q ss_conf 33676666546-854331000597899999851612
Q gi|254780451|r 533 LSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAGNV 567 (896)
Q Consensus 533 ~SgNRNFeGR~-~p~~~~~yLaSP~lVvA~AiaG~I 567 (896)
+++||||-||| ||. +.+|||||..++|+||.|.|
T Consensus 379 STTNRNFVGRMGH~~-S~VyLaSP~VAAASAi~G~i 413 (419)
T TIGR02083 379 STTNRNFVGRMGHPK-SEVYLASPAVAAASAIKGKI 413 (419)
T ss_pred EECCCCCCCCCCCCC-CEEEECCHHHHHHHHHCCCC
T ss_conf 413766301457876-40674375688787524402
No 29
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=0 Score=591.91 Aligned_cols=171 Identities=62% Similarity=1.016 Sum_probs=168.1
Q ss_pred EECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 96588572331645655544737888987498865631456530235777665203601223212577765772245389
Q gi|254780451|r 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPS 750 (896)
Q Consensus 671 ~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~ 750 (896)
+|||+||||||||||+|+++||||+||.++||.++||||||||||||||||||||+|+||+|+|+ ++.+||+|+++|+
T Consensus 1 ilGDsiTTDHISPAG~I~~~spAg~yL~~~gv~~~dfNsygsRRgNhevM~RgtFaNirl~N~~~--~~~~gg~t~~~p~ 78 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLV--PGTEGGTTHHPPT 78 (171)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHCCCHHHHCCC--CCCCCCEEEECCC
T ss_conf 98887761355878778889836899998399833314510013578999877435740321047--7887850887799
Q ss_pred CCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHH
Q ss_conf 97873799999899819988999467778673079998866761708999764789888505355232233178989888
Q gi|254780451|r 751 KEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 (896)
Q Consensus 751 ~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~ 830 (896)
+++|+||||||+|+++++|||||||+|||+|||||||||+|+|||||||||||||||||+|||+||||||||++++++++
T Consensus 79 g~~~~i~daA~~Y~~~~~pliivag~~yG~GSSRd~Aa~~~~~lGv~aVia~Sf~rIh~~NLv~mGvlPL~F~~g~~~~~ 158 (171)
T cd01580 79 GEVMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADS 158 (171)
T ss_pred CCEECHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCEEEEEECCCCCHHH
T ss_conf 82640999999999819975998214225666188899879980987999726999999751225325677569999867
Q ss_pred HCCCCCEEEEEEC
Q ss_conf 1989743899726
Q gi|254780451|r 831 LNIKGDEIINIRK 843 (896)
Q Consensus 831 L~l~G~E~~~i~~ 843 (896)
|+|+|+|+|+|.+
T Consensus 159 L~L~G~E~~~I~G 171 (171)
T cd01580 159 LGLTGEETYDIIG 171 (171)
T ss_pred CCCCCCEEEEEEC
T ss_conf 0888754788649
No 30
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=0 Score=392.68 Aligned_cols=149 Identities=34% Similarity=0.480 Sum_probs=129.9
Q ss_pred EECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 96588572331645655544737888987498865631456530235777665203601223212577765772245389
Q gi|254780451|r 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPS 750 (896)
Q Consensus 671 ~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~ 750 (896)
|++|+|||||||||| +||++||+.+ .|.+.+| ++..|.+ +.+.+.+++.++
T Consensus 1 Kv~~k~TTDHISPAG---------p~lkyRg~~~--------------~is~~~~--~~~~n~~----~~~~~~~~~~~~ 51 (149)
T cd01578 1 KAKGKCTTDHISAAG---------PWLKYRGHLD--------------NISNNLL--IGAINAE----NGKANSVKNQVT 51 (149)
T ss_pred CCCCCCCCCCCCCCC---------CCHHCCCCHH--------------HHHHCCC--CCCEECC----CCCCCCEECCCC
T ss_conf 999976501658787---------2121156478--------------8860771--0212000----224575124889
Q ss_pred CCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHH
Q ss_conf 97873799999899819988999467778673079998866761708999764789888505355232233178989888
Q gi|254780451|r 751 KEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 (896)
Q Consensus 751 ~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~ 830 (896)
|+.++||||||+|+++|+|||||||+|||+|||||||||+|++||||||||+|||||||+||++||||||||.+++||++
T Consensus 52 g~~~~i~daA~~y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rIh~~Nl~~~Gilpl~f~~~~d~d~ 131 (149)
T cd01578 52 GEYGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDK 131 (149)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHC
T ss_conf 96756899999999849977998255235686176799999971967999725999999741434643588658266640
Q ss_pred HCCCCCEEEEEECHHHCCCC
Q ss_conf 19897438997263225899
Q gi|254780451|r 831 LNIKGDEIINIRKLKTISPR 850 (896)
Q Consensus 831 L~l~G~E~~~i~~~~~l~p~ 850 (896)
|+++|+++|.++++|.||
T Consensus 132 --i~~~d~i~i~gl~~L~PG 149 (149)
T cd01578 132 --IHPDDKVDILGLTDFAPG 149 (149)
T ss_pred --CCCCCEEEEECHHHCCCC
T ss_conf --799987986483314898
No 31
>TIGR00139 h_aconitase homoaconitase; InterPro: IPR004418 Homoaconitase (cis-homoaconitase; 4.2.1.36 from EC) catalyses the dehydration of cis-homoaconitate to homoisocitric acid. It is an enzyme from the alpha-aminoadipate pathway of lysine biosynthesis, and has been identified in higher fungi and several archaea and one thermophilic species of bacteria, Thermus thermophilus . Like aconitase, this enzyme binds a [4Fe-4S]-cluster, and it has a similar domain architecture to aconitase and isopropylmalate isomerase family proteins, although it catalyses a different reaction . Homoaconitase is found in the mitochondria of certain fungi. Information about related proteins can be found at Protein of the Month: Aconitase .; GO: 0004409 homoaconitate hydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0009085 lysine biosynthetic process.
Probab=100.00 E-value=0 Score=372.54 Aligned_cols=610 Identities=25% Similarity=0.347 Sum_probs=414.9
Q ss_pred CCCHHHHHHHHHCCCCC--CCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH
Q ss_conf 57999999986123554--5777663645325220000035799999999999997199999928789813998683211
Q gi|254780451|r 59 TVTKEQIHAFVKWLDNK--GTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896)
Q Consensus 59 ~~~~~~~~~~~~w~~~~--~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896)
+++++.+....--++.. ...+.-+.+.|.|.+.||-.- |+.+.|..+ ...++.---.+-..+||.+|-
T Consensus 3 ~~~~~~~~~~~~~~p~g~~~~~gd~~~~~p~~c~~~d~~w-p~~~~~~~~---------g~~~~~~p~~~~~~~d~d~~~ 72 (712)
T TIGR00139 3 NLTEKIVQKYAVGLPEGKFVHSGDYVTIKPHHCLTHDNSW-PCALKFLGL---------GATKLHNPDQIVTTLDHDVQN 72 (712)
T ss_pred CHHHHHHHHHHCCCCCCCEEECCCEEEECCHHHHCCCCCC-CEEEEEECC---------CCHHCCCCCHHEEECCHHHCC
T ss_conf 2355677654126765633315740341321210256655-300000002---------401115720200000000102
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE-EECC
Q ss_conf 005998899989998875426789999877421488078608876216778986335113103688617983013-2068
Q gi|254780451|r 137 DYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGTD 215 (896)
Q Consensus 137 d~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl-VGtD 215 (896)
.. ++|..+|+-+.--.+. +++.++|.|.||-||+.+| +++++|.++ +.+|
T Consensus 73 ~~---------------~~~~~~~~~~~~~~~~-~~~~~~p~g~g~g~~~~~~-------------~g~~~p~~~~~~~d 123 (712)
T TIGR00139 73 KS---------------DKNLKKYKNIEEFAKK-HGVDFYPAGRGIGHQILIE-------------EGFAWPGNLAVASD 123 (712)
T ss_pred CC---------------HHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCEEEEE-------------CCCCCCCCEEEECC
T ss_conf 21---------------1234666666766755-1542134555655223430-------------35334430122024
Q ss_pred CCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE--C
Q ss_conf 87644452012320343489999970775141167289999976778644368899999998410221212799961--5
Q gi|254780451|r 216 SHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFG--S 293 (896)
Q Consensus 216 SHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G--~ 293 (896)
||..++||+|++|.-+--+|+.+++.....|..+|.+..+.+.|.|++|++.||+++.+++.+..+.+..+.+||.| +
T Consensus 124 ~~~~~~gg~g~~g~p~~~~d~~~~w~~g~~ww~~pp~~~~~~~g~~p~g~~g~d~~~~~cg~~~~d~~~~~~~~~~g~~~ 203 (712)
T TIGR00139 124 SHSNTYGGLGCLGTPIVRTDAAAVWATGKTWWQIPPVAKVELKGVLPPGVTGKDVIVALCGLFNNDDVLNHAIEFTGSED 203 (712)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHH
T ss_conf 33321245332355300011012200464100157531023313367887630244333310242023322221146501
Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCC--------HHHHHHHHHHH--HHHHCCCCC-CCCCCC
Q ss_conf 5001787563212000100372037751998999999863999--------88999999874--641023676-766788
Q gi|254780451|r 294 GFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRS--------NSRVDLVEAYT--KVQGMWRED-IDYEKV 362 (896)
Q Consensus 294 gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~--------~~~v~lve~Y~--ka~~l~~~~-~~d~~a 362 (896)
.+..|+++.|.||+||..|+|+..|+||+|....+|++..... +......+.|. ....++..+ ..|.++
T Consensus 204 ~~~~~~~d~~~~~~~~~~~wg~~~g~~p~d~~~~~w~~~~~~~~~~g~~~~p~~~~~~~~~~~p~~~~~~~~p~~~d~~~ 283 (712)
T TIGR00139 204 TLNALPVDHRLTIANLTTEWGALSGLFPVDKTLKGWLKGKATLAKLGLNDGPFKNPKAERFTHPLLEELFENPLKADKGA 283 (712)
T ss_pred HHHHCCCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 22211322101110011000000023202467776540102344421456643230234443256787651343234330
Q ss_pred CCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 63069999803143012265665641367773011668766400110023210245788888755544575310467654
Q gi|254780451|r 363 AFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTF 442 (896)
Q Consensus 363 ~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtS 442 (896)
.|.+.+-+||+++.|.++||.+-.-..++.++.. .+..+.-+++-||||+.
T Consensus 284 ~~~~~~~~d~~~~~~~~~gp~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~c~~~~ 334 (712)
T TIGR00139 284 HYAKELFLDLATLTPYVSGPNSVKVANPLKDLEA-----------------------------QDIKVDKAYLVSCTNSR 334 (712)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEECCCHHHHHHH-----------------------------HCCCCCCEEEEEECCCH
T ss_conf 3456665534331000167553010111455432-----------------------------10101200134202211
Q ss_pred CHHHHHHHHHHHHHHHH-CC---CCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCC-CCCCCH
Q ss_conf 59998778899988986-49---87586730797016189999999858857777505302055322421277-768830
Q gi|254780451|r 443 NPSVMIGAGLLARNAVR-AG---LKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNS-GALKKE 517 (896)
Q Consensus 443 np~~miaAgllAkkAv~-~G---lkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGns-G~l~~~ 517 (896)
. +++.+|+-+.+.+.+ .| -+++|.|+..++..|..+....+..|-++.|.++|..-+..||+||+|.. |.+.+.
T Consensus 335 ~-~d~~~~~~~~~~~~~~~gg~~~~~~pg~~~~~~~~~~~~~~~~~~~g~w~~~~~~g~~~~p~gcgpc~g~g~g~~~pg 413 (712)
T TIGR00139 335 L-SDLAAAADVFCPAGDLNGGKVPKVHPGVEFYVAAASSPEELDAEGNGDWEKLLEAGCTPLPAGCGPCIGLGAGLLEPG 413 (712)
T ss_pred H-HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCC
T ss_conf 3-456666665420000256645422455112211013313332013531578875045225655552000344334633
Q ss_pred HHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCC-CCCC----CCCCCCCCCCCCCCC
Q ss_conf 22101136635878633676666546854331000597899999851612223100-2355----488886320015688
Q gi|254780451|r 518 ISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIK-DPIG----EDQQGSPVYLRDIWP 592 (896)
Q Consensus 518 i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~-dplg----~~~~G~~v~L~DiwP 592 (896)
+ +.+...||||+||++......||+||.+++|.++.|++.---.. .|-| .-.+|.-+.-.|-.-
T Consensus 414 --------~---~g~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~g~~~~p~~~~~~~gw~~~~~~~g~g~~~~~~~~ 482 (712)
T TIGR00139 414 --------E---VGISATNRNFKGRLGSKDALAYLGSPEVVAASALLGKLSGPGWYLTPEGWTEVPFGEGDGVKEEDRLL 482 (712)
T ss_pred --------C---CCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf --------1---13101354323334530234431351244444442012576310045653101035676643022332
Q ss_pred CHHHHHH-HHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 8578888-876415832100012233478712201557877620567433342378876776545543324358558999
Q gi|254780451|r 593 KDSEIQS-FVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCL 671 (896)
Q Consensus 593 s~~Ei~~-~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~pPff~~~~~~~~~~~~i~~arvL~~ 671 (896)
+++|.-+ ++...-++ +.++..+.+ -+.|.... .....+. .+.+++ ..+.+ .+++-
T Consensus 483 ~~~~~~~~~~g~~~~~---------~~~~~~~~~-~~~p~~~~----~~~g~~~---~~~g~p------~~~~g-~~~~c 538 (712)
T TIGR00139 483 TNEEALEKIIGILDDP---------VADGEKNFA-TEAPKVEE----SEQGLTE---ILPGFP------EEFSG-ELVLC 538 (712)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHH-HCCCCCHH----HHCCHHH---HHCCCC------HHHCC-CEEEE
T ss_conf 0056789886544322---------210022211-01432000----1200355---422542------01056-36774
Q ss_pred ECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCC
Q ss_conf 65885723316456555447378889874988656314565302357776652036012232125777657722453899
Q gi|254780451|r 672 LGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSK 751 (896)
Q Consensus 672 lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~ 751 (896)
-.|++.||-|-|. +|.....+++.. |.|-.. .|.- .+...+.
T Consensus 539 d~d~~~~dg~~pg----------~~~~~dd~p~~~-------------~~~~c~-----~~~d-----~~~~~~~----- 580 (712)
T TIGR00139 539 DADNVNTDGIYPG----------KYTYQDDVPPEK-------------LARVCL-----ENYD-----PEFRTKA----- 580 (712)
T ss_pred ECCCCCCCCCCCC----------CCCCCCCCCHHH-------------HHHHHH-----HHCC-----CCCCCCC-----
T ss_conf 0565555642466----------423334466567-------------888876-----4136-----1010213-----
Q ss_pred CEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 78737999998998199889994677786730799988667617089997647898885053552322331789
Q gi|254780451|r 752 EELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKG 825 (896)
Q Consensus 752 ~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~ 825 (896)
...-+++.|-|||+||||+.||.....-|+..|+.-||..|...|-++..++.|+.+.-
T Consensus 581 ---------------~~gd~~~~g~~~g~g~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~p~~ 639 (712)
T TIGR00139 581 ---------------HPGDILVSGFNFGCGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLGLEVPAL 639 (712)
T ss_pred ---------------CCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf ---------------55623663123466752245556555315542651343320000110012433225789
No 32
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=6e-37 Score=289.02 Aligned_cols=422 Identities=23% Similarity=0.344 Sum_probs=293.9
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCH
Q ss_conf 86657999999986123554577766364532522000003579999999999999719999992878981399868321
Q gi|254780451|r 56 DGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLI 135 (896)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~ 135 (896)
.|++..++.+-.-..- + .-.++....-+..-|=-||.||-|.--.| +++.. +- --+|++. |
T Consensus 369 ~G~TlaqKmvgkAcG~-~-gv~pG~~cep~~ttVGSQDTTGpMTrdEl-------k~lA~----l~--f~adlvm----Q 429 (841)
T PRK09238 369 KGFTLAQKMVGRACGV-P-GVRPGTYCEPKMTTVGSQDTTGPMTRDEL-------KDLAC----LG--FSADLVM----Q 429 (841)
T ss_pred CCEEHHHHHHHHHCCC-C-CCCCCCCEEEEEEEECCCCCCCCCCHHHH-------HHHHC----CC--CCCCHHH----H
T ss_conf 7513999998873399-8-76778710257752147768886638999-------97651----38--6733333----1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE-EEC
Q ss_conf 1005998899989998875426789999877421488078608876216778986335113103688617983013-206
Q gi|254780451|r 136 VDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGT 214 (896)
Q Consensus 136 vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl-VGt 214 (896)
- |-...|+-+-.+.+. ...--+|+. .| +---..||.||+|-+. - .+..|||+ .|.
T Consensus 430 S--fCHTAaypkp~d~~~--~~~Lp~F~~----~r-GgvslrpgdgvIHswL----N-----------rm~lpDtvgtGG 485 (841)
T PRK09238 430 S--FCHTAAYPKPVDVKT--HHTLPDFIM----NR-GGVSLRPGDGVIHSWL----N-----------RMLLPDTVGTGG 485 (841)
T ss_pred C--CCCCCCCCCHHHHHH--HHHHHHHHH----HC-CCEECCCCCCCHHHHH----H-----------HCCCCCCEECCC
T ss_conf 3--434445687465552--455799998----56-9853159986089998----6-----------142775233278
Q ss_pred CCCCCCCCCCHHHHCCCCH-HHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHH-HHHC----------CCC
Q ss_conf 8876444520123203434-899999707751411672899999767786443688999999-9841----------022
Q gi|254780451|r 215 DSHTTMINALGILGWGVGG-IEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTIT-QMLR----------KEG 282 (896)
Q Consensus 215 DSHT~~~galG~la~GVGg-~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~-~~Lr----------~~G 282 (896)
||||-+-=|+ +++.|+ +=|-|+.+|. ..|.+||.|.|+++|++++|+|=.|||-.|- ..+. ++.
T Consensus 486 DSHTRfp~Gi---sFpagSGlVAfaaatG~-mpl~mPESVlVrFkG~mqpgitlRDlV~Aip~~aik~glltv~k~~k~N 561 (841)
T PRK09238 486 DSHTRFPIGI---SFPAGSGLVAFAAATGV-MPLDMPESVLVRFKGKMQPGITLRDLVNAIPYYAIKQGLLTVEKKGKKN 561 (841)
T ss_pred CCCCCCCCCE---EECCCCCHHHHHHHCCC-CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCC
T ss_conf 6555542330---10588730256776187-6678875079997135689962999998889999970552122227840
Q ss_pred C-CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHH-HHHHHH----------CCCC-----HHHHHHHHH
Q ss_conf 1-2127999615500178756321200010037203775199899-999986----------3999-----889999998
Q gi|254780451|r 283 V-VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT-IDYLRL----------SGRS-----NSRVDLVEA 345 (896)
Q Consensus 283 v-vgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T-~~YL~~----------tGR~-----~~~v~lve~ 345 (896)
+ .|+++|--| +..|.++.-++++.-++|..|..+.+--++++ .+||+. .|-. +..++..|+
T Consensus 562 iF~GRilEieg--l~~L~veQAFelsDasAErsaa~cti~l~~e~v~eyl~sni~ll~~MI~~Gy~d~~tl~rRi~~m~~ 639 (841)
T PRK09238 562 IFSGRILEIEG--LPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLRSNIVLLKWMIAEGYGDARTLERRIAAMEE 639 (841)
T ss_pred EECCEEEEECC--CCCCCHHHHEECCHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 22232789715--7763366521013123432105776864888899999999999999998268886899999999998
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEEEECCCC-CCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC
Q ss_conf 746410236767667886306999980314-3012265665641367773011668766400110023210245788888
Q gi|254780451|r 346 YTKVQGMWREDIDYEKVAFTKKMKLDLGNV-SPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFH 424 (896)
Q Consensus 346 Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~i-eP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (896)
|.....|. .+|++|+|..+|||||++| ||.+|+|..|||+.++|++..+ .
T Consensus 640 wl~~p~ll---~~D~~A~Yaa~ieidl~~i~EPila~PndpDdv~~lS~v~~~-------------~------------- 690 (841)
T PRK09238 640 WLANPELL---EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT-------------K------------- 690 (841)
T ss_pred HHCCCCCC---CCCCCCCEEEEEEECHHHCCCCEECCCCCCCHHHHHHHHHCC-------------C-------------
T ss_conf 74495236---789999657899974788288755288993113207776067-------------4-------------
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCC
Q ss_conf 75554457531046765459998778899988986498758673079701618999999985885777750530205532
Q gi|254780451|r 425 LKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 (896)
Q Consensus 425 l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GC 504 (896)
|.-.+||||- .|-..+.|||-+.++ ..-..-+++.++|-.+-..++|.++|+..+|.++|+++--|||
T Consensus 691 -----idevFiGSCM--tniGh~ra~~~~l~~-----~~~~~~~rlwv~pPT~md~~~L~~Eg~y~i~~~~gar~E~PGC 758 (841)
T PRK09238 691 -----IDEVFIGSCM--TNIGHFRAAGKLLEG-----KGGQLPTRLWVAPPTKMDADQLTEEGYYSIFGKAGARIEMPGC 758 (841)
T ss_pred -----CCEEEEEECC--CCHHHHHHHHHHHHH-----CCCCCCCCEEECCCCCCCHHHHHHCCHHHHHHHCCCCCCCCCC
T ss_conf -----5547763110--351579999999972-----5778886469679973249998753159998742642028875
Q ss_pred CCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24212777688302210113663587863367666654685433100059789999985161222310023554888863
Q gi|254780451|r 505 TTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSP 584 (896)
Q Consensus 505 g~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~ 584 (896)
+-|+||... +.++.. + ++++.|||++|++... .+||+|-++++..|+-|++
T Consensus 759 sLCMGNQar--------v~~~~t-V--~sTSTRnF~nRlg~~a-~vyLgSaelaav~a~LGr~----------------- 809 (841)
T PRK09238 759 SLCMGNQAR--------VADGAT-V--FSTSTRNFPNRLGKGA-NVYLGSAELAAVCALLGRL----------------- 809 (841)
T ss_pred CCCCCCHHH--------CCCCCE-E--EEECCCCCCCCCCCCC-EEEEEHHHHHHHHHHHCCC-----------------
T ss_conf 303266510--------279998-9--8714567876446886-3897302799999986579-----------------
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 2001568885788888764
Q gi|254780451|r 585 VYLRDIWPKDSEIQSFVNK 603 (896)
Q Consensus 585 v~L~DiwPs~~Ei~~~~~~ 603 (896)
|+.+|-.+++.+
T Consensus 810 -------Pt~eEY~~~~~~ 821 (841)
T PRK09238 810 -------PTVEEYQAYVAE 821 (841)
T ss_pred -------CCHHHHHHHHHH
T ss_conf -------999999999986
No 33
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=5.5e-35 Score=274.69 Aligned_cols=415 Identities=25% Similarity=0.362 Sum_probs=282.2
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEE---EECC
Q ss_conf 6657999999986123554577766364532522000003579999999999999719999992878981399---8683
Q gi|254780451|r 57 GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHS 133 (896)
Q Consensus 57 ~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlv---iDHs 133 (896)
|++..++.+-.-.. ++ .-.++....-+-.-|=-||.||-|.--.|-.| +-+|-+ +|+| +=|.
T Consensus 372 G~TlaqKmvgrAcG-v~-girpGtycepkmttVGSQDTTGpMTrdElk~l----Aclgfs---------aD~vmQSfCHT 436 (852)
T COG1049 372 GFTLAQKMVGRACG-VP-GIRPGTYCEPKMTTVGSQDTTGPMTRDELKDL----ACLGFS---------ADLVMQSFCHT 436 (852)
T ss_pred CCCHHHHHHHHCCC-CC-CCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH----HHHCCC---------CHHHHHHCCCC
T ss_conf 41399987410248-76-20678733514553045667887648999987----763326---------02554410132
Q ss_pred CHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE--CCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE
Q ss_conf 2110059988999899988754267899998774214880786--08876216778986335113103688617983013
Q gi|254780451|r 134 LIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVV--PPGTGICHQINLEYLGQSVWTKNENGENIAYPDTC 211 (896)
Q Consensus 134 v~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~--pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl 211 (896)
- .|.. +.+. .-..+--.|+ .|++.| .||.|++|-.. - .+..|||+
T Consensus 437 A--aypk-pvdv--------~th~~Lp~Fi-------~~rGgVslrpgdGVIHswL----N-----------rmllpDtv 483 (852)
T COG1049 437 A--AYPK-PVDV--------KTHHTLPDFI-------MNRGGVSLRPGDGVIHSWL----N-----------RMLLPDTV 483 (852)
T ss_pred C--CCCC-CCCH--------HCCCCCHHHH-------HHCCCEECCCCCCCHHHHH----H-----------HCCCCCCE
T ss_conf 3--4688-2001--------1255326778-------6168630279996388988----7-----------44487430
Q ss_pred -EECCCCCCCCCCCHHHHCCCCHH-HHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHH------HHHCC---
Q ss_conf -20688764445201232034348-99999707751411672899999767786443688999999------98410---
Q gi|254780451|r 212 -VGTDSHTTMINALGILGWGVGGI-EAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTIT------QMLRK--- 280 (896)
Q Consensus 212 -VGtDSHT~~~galG~la~GVGg~-eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~------~~Lr~--- 280 (896)
.|.||||-+-=|+ +++.|+- =|-|+.+|. ..|.+||.|.|++.|+++||+|-.||+-.|- +.|..
T Consensus 484 gtGGDSHTRfpiGi---sFpAgSGlVAfAaatGv-mpldmPeSVlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~ 559 (852)
T COG1049 484 GTGGDSHTRFPIGI---SFPAGSGLVAFAAATGV-MPLDMPESVLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKK 559 (852)
T ss_pred ECCCCCCCCCCCCC---EECCCCCHHHHHHHCCC-CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEECCC
T ss_conf 03886555542330---00588731345675186-457887217998603557986799987663799987400110015
Q ss_pred --CCC-CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEE-ECCCHHHHHHHHHC----------CCCH-----HHHH
Q ss_conf --221-212799961550017875632120001003720377-51998999999863----------9998-----8999
Q gi|254780451|r 281 --EGV-VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGF-FPVDRGTIDYLRLS----------GRSN-----SRVD 341 (896)
Q Consensus 281 --~Gv-vgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gi-fp~De~T~~YL~~t----------GR~~-----~~v~ 341 (896)
+.+ .|+++|-. |+..|-++.-++++.-++|..|.... --.+|...+||+.. |-.+ ..++
T Consensus 560 ~k~NiFsGRIlEie--glp~LkveQAFeltDasAErsaa~ctikl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~ 637 (852)
T COG1049 560 GKKNIFSGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRID 637 (852)
T ss_pred CCCCEECCEEEEEC--CCCCCCHHHHEECCCHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 76431112268861--6875116553312301243210466686270259999998899999999830332788999999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC-CCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC
Q ss_conf 9998746410236767667886306999980314-301226566564136777301166876640011002321024578
Q gi|254780451|r 342 LVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNV-SPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 (896)
Q Consensus 342 lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~i-eP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (896)
..|+|...-.| +.+|.||+|..+|||||.+| ||.+++|..|||+..++++..+.
T Consensus 638 ~me~wla~p~l---le~D~dAeYaavIeidL~~IkEPila~PNdpDd~r~lse~~~~~---------------------- 692 (852)
T COG1049 638 KMEAWLANPEL---LEADADAEYAAVIEIDLADIKEPILAAPNDPDDVRLLSEVAGDK---------------------- 692 (852)
T ss_pred HHHHHHCCCCC---CCCCCCCCEEEEEEEEHHHCCCCEECCCCCCHHHHHHHHHCCCC----------------------
T ss_conf 99986528401---47888874268999606771787542899902766667751773----------------------
Q ss_pred CCCCCCCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEE
Q ss_conf 8888755544575310467-654599987788999889864987586730797016189999999858857777505302
Q gi|254780451|r 421 CDFHLKHGDVAIASITSCT-NTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSL 499 (896)
Q Consensus 421 ~~~~l~~g~VvIAaIgSCT-NtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i 499 (896)
|.-.+||||- |-. ....++.+|.+ + +| .++ .+..++|-++-..++|.++|...+|-++|+++
T Consensus 693 ---------idevFiGSCMtniG--h~ra~~klL~~-~--~~-~~~--~rLwvapPTkmd~~qL~~EG~y~ifg~agar~ 755 (852)
T COG1049 693 ---------IDEVFIGSCMTNIG--HFRAAGKLLEN-A--KG-ELP--TRLWVAPPTKMDAAQLTEEGYYSIFGKAGARI 755 (852)
T ss_pred ---------CCEEEEEHHHCCCH--HHHHHHHHHHC-C--CC-CCC--CCEEECCCCCCCHHHHHHCCHHHHHHHCCCEE
T ss_conf ---------31134410112521--49999999960-7--66-777--64596488623499986530688876313331
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 05532242127776883022101136635878633676666546854331000597899999851612223100235548
Q gi|254780451|r 500 VGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGED 579 (896)
Q Consensus 500 ~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~ 579 (896)
--|||+-|+||.. .+.++..+ ++++.|||++|++.+.. +||+|-++++.+||-|+|
T Consensus 756 E~PGCsLCMGNQa--------rv~dgatV---~sTSTRnF~nRlg~~a~-vyL~Saelaav~aiLGki------------ 811 (852)
T COG1049 756 EMPGCSLCMGNQA--------RVADGATV---FSTSTRNFPNRLGKGAN-VYLASAELAAVCAILGKI------------ 811 (852)
T ss_pred CCCCCCCCCCCHH--------HHCCCCEE---EEECCCCCCCCCCCCCC-EEECCCHHHHHHHHHCCC------------
T ss_conf 1787520226674--------63369879---86224567742246632-244000799999987589------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 888632001568885788888764
Q gi|254780451|r 580 QQGSPVYLRDIWPKDSEIQSFVNK 603 (896)
Q Consensus 580 ~~G~~v~L~DiwPs~~Ei~~~~~~ 603 (896)
||-+|-..++.+
T Consensus 812 ------------Pt~eEY~~~v~~ 823 (852)
T COG1049 812 ------------PTVEEYMAYVAK 823 (852)
T ss_pred ------------CCHHHHHHHHHH
T ss_conf ------------988999999987
No 34
>KOG0454 consensus
Probab=100.00 E-value=6.6e-36 Score=281.40 Aligned_cols=381 Identities=20% Similarity=0.246 Sum_probs=244.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCC
Q ss_conf 98746410236767667886306999980314301226566564136777301166876640011002321024578888
Q gi|254780451|r 344 EAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDF 423 (896)
Q Consensus 344 e~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (896)
-+|.++..+|..+.+|+.+.|+..++|..-++.|.+.|..+|||..|+..-..++.+..+...........+++......
T Consensus 12 ~~we~avaywktl~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd~i~a~~~ersL~ymGl~pnt 91 (502)
T KOG0454 12 CKWESAVAYWKTLFPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTDKILARASERSLVYMGLNPNT 91 (502)
T ss_pred CCHHHHHHHHHCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCEEECCCCCCC
T ss_conf 41566656551226764431100100020112324552488665788677689974213688875533110202678886
Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE-EEEECCCHHHHHHHHHCCCHHHHHHHCCEECCC
Q ss_conf 8755544575310467654599987788999889864987586730-797016189999999858857777505302055
Q gi|254780451|r 424 HLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVK-TSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGF 502 (896)
Q Consensus 424 ~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vk-t~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~ 502 (896)
.+.--.+.-.+||||||....++..+|+ |-+|.|+.-.+| .+++|||+.|+...+..||.+++..+||.|..-
T Consensus 92 ~v~s~~~dkVfigsctn~riedlr~aAa------Vv~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~eagF~wrea 165 (502)
T KOG0454 92 NVDSLMTDKVFIGSCTNIRIEDLREAAA------VVDGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFNEAGFYWREA 165 (502)
T ss_pred CCCEEEECCEECCCCCCCCHHHHHHHHH------CCCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHCEEHHHC
T ss_conf 5204662334415555420887765441------2054045753651388068316676888876678877613201322
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC-CCCCCCCCCCCCCC
Q ss_conf 32242127776883022101136635878633676666546854331000597899999851612-22310023554888
Q gi|254780451|r 503 GCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV-RKNLIKDPIGEDQQ 581 (896)
Q Consensus 503 GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I-~~d~~~dplg~~~~ 581 (896)
||+.|+||.-.--...+. +-++.|||||||+|.+.++ .||||.+..|..|.|+- ++-.. +
T Consensus 166 gcs~clgmnpd~l~~yer----------castsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~~~~~~-----~--- 226 (502)
T KOG0454 166 GCSFCLGMNPDGLCHYER----------CASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDLGFREF-----T--- 226 (502)
T ss_pred CCCCCCCCCCHHCCHHHH----------HHHCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCCCCCCCCC-----C---
T ss_conf 664113688000137887----------5423687861001655432-22205677525546532463445-----5---
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CHH-HCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCC--
Q ss_conf 863200156888578888876415832100012233478-712-201557877620567433342378---8767765--
Q gi|254780451|r 582 GSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKG-DSS-WWNIEVPESETYMWDEKSTYVRNP---PYFETIS-- 654 (896)
Q Consensus 582 G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g-~~~-w~~l~~~~~~~y~w~~~StyI~~p---Pff~~~~-- 654 (896)
| +|. ..+.|.+|.. ++| .+. .++.....+ .-.+.||.|-+- +| ++.+
T Consensus 227 ~-----k~~------------~~~~Ps~~l~-----~~g~s~sv~~~~~li~~---ia~ds~t~i~~~at~e~-~s~~sS 280 (502)
T KOG0454 227 G-----KDS------------LKVSPSPFLT-----LKGESPSVLPAKDLIVS---IATDSSTDIPRVATMEF-SSTTSS 280 (502)
T ss_pred C-----CCC------------CCCCCCCEEE-----ECCCCCCCCCCCCCHHH---HHCCCCCCCCCEECCCC-CCCCCC
T ss_conf 6-----421------------2479983587-----27988653334443011---10122222431002557-886443
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHH
Q ss_conf 45543324358558999658857233164565554473788898749886563145653023577766520360122321
Q gi|254780451|r 655 KHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYM 734 (896)
Q Consensus 655 ~~~~~~~~i~~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l 734 (896)
...++...+. .++.|||.||.|.|+. ||...-+.+.+ |+.|..+++.-.
T Consensus 281 l~m~~F~tLc-----~vv~dNiDTD~IIP~q----------fltli~~~~~~---------------~~~f~~~~~dg~- 329 (502)
T KOG0454 281 LGMETFHTLC-----GVVADNIDTDQIIPAQ----------FLTLIPSTGLI---------------LSCFYEVALDGL- 329 (502)
T ss_pred CCCCCEEEEE-----HHHHHHCCCCCCCCHH----------HHCCCCCCHHH---------------HHHHHHHEECCC-
T ss_conf 3574300110-----0145307767635755----------52015553665---------------532122102478-
Q ss_pred CCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCC
Q ss_conf 25777657722453899787379999989981998899946777867307999886676170899976478988850535
Q gi|254780451|r 735 LGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIG 814 (896)
Q Consensus 735 ~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~ 814 (896)
++ -=.|.+...+|..+=| .|+++|+|+|||||||||-..-...|.|++||.||+||.-.|-+.
T Consensus 330 ----~k-~~~~dFv~~vE~~~~~------------siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN~~a 392 (502)
T KOG0454 330 ----PK-SFVTDFVLPVEPLRKY------------SIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRNSVA 392 (502)
T ss_pred ----CH-HHCCCEECCCCCCCEE------------EEEECCCCCCCCCCCCCCCCHHHHCCCCEECCHHHHHHHHHHHHH
T ss_conf ----23-3122322146556436------------799645775555545557302322123141160389999976775
Q ss_pred CEEEEEECC
Q ss_conf 523223317
Q gi|254780451|r 815 MGVIPFAFG 823 (896)
Q Consensus 815 mGiLPL~F~ 823 (896)
-|.||..-.
T Consensus 393 tG~l~~~~s 401 (502)
T KOG0454 393 TGELPPLPS 401 (502)
T ss_pred CCCCCCCCC
T ss_conf 287468985
No 35
>pfam00694 Aconitase_C Aconitase C-terminal domain. Members of this family usually also match to pfam00330. This domain undergoes conformational change in the enzyme mechanism.
Probab=100.00 E-value=1.7e-34 Score=271.15 Aligned_cols=129 Identities=40% Similarity=0.602 Sum_probs=124.7
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEEC
Q ss_conf 88987498865631456530235777665203601223212577765772245389978737999998998199889994
Q gi|254780451|r 695 SYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFA 774 (896)
Q Consensus 695 ~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViA 774 (896)
+|++.+|+...++++++.++.++.+|++++|.|.++.|.+. .+.+++.+.+.|+++..++++++++|++++++|||||
T Consensus 3 ~f~~~~G~a~~~~~~nidtd~iip~~~l~~~~~~glg~~lf--~~~r~~~~~~~~~~~~~~f~ln~~~yk~~~~~~ilva 80 (131)
T pfam00694 3 KFLTLRGVCTPDFISNVDTDLIIPKQFLGTIANIGLGNILF--DGWRANKTTHLPTGENPDFVDAAERYKQHGAPILVIG 80 (131)
T ss_pred CCCHHCCEECCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 81520485014466656763413889847766777999835--7553676556889978885551699987599879982
Q ss_pred CCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 677786730799988667617089997647898885053552322331789
Q gi|254780451|r 775 GVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKG 825 (896)
Q Consensus 775 G~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~ 825 (896)
|+||||||||||||++++.+|||||||+||||||++|+++||||||+|++|
T Consensus 81 g~nfG~GSSREhA~~al~~~Gi~~via~Sf~~If~~N~~~~GlLPi~lp~g 131 (131)
T pfam00694 81 GKNYGCGSSREHAAWAPRDLGIKAVIAKSFARIHRNNLIKNGLLPLTFPNG 131 (131)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCEEEEEECCC
T ss_conf 476677754899999999839959998139999998888678345751899
No 36
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.97 E-value=1.9e-31 Score=248.84 Aligned_cols=120 Identities=40% Similarity=0.673 Sum_probs=94.1
Q ss_pred EECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCC
Q ss_conf 96588572331645655544737888987498865631456530235777665203601223212577765772245389
Q gi|254780451|r 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPS 750 (896)
Q Consensus 671 ~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~ 750 (896)
|+||+|+||||+||+. +||..+ .|.+.|.+.+|...+ |
T Consensus 1 k~GDnIdTD~IiPa~~--------~~~~~~--------------~~~~~~~~~~~~~~~-------------------p- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPLR--------------SNIPAISEFVFHRVD-------------------P- 38 (121)
T ss_pred CCCCCCCHHHCCCCCC--------CCCCCC--------------CCHHHHHHHHHHCCC-------------------H-
T ss_conf 9999667554268997--------724516--------------998999743251488-------------------3-
Q ss_pred CCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHH
Q ss_conf 97873799999899819988999467778673079998866761708999764789888505355232233178989888
Q gi|254780451|r 751 KEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 (896)
Q Consensus 751 ~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~ 830 (896)
+-+.++ +.+.+.|||||+|||||||||||+++++.+|||||||+||+|||++|+++||+|||+|.+++++++
T Consensus 39 -------~f~~~~-~~~~~~IiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~in~Gllpl~~~~~~~~~~ 110 (121)
T cd01579 39 -------TFAERA-KAAGPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDR 110 (121)
T ss_pred -------HHHHHC-CCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf -------477643-458981999667567897289999999983945999758999999878877862088648767887
Q ss_pred HCCCCCEEEEEE
Q ss_conf 198974389972
Q gi|254780451|r 831 LNIKGDEIINIR 842 (896)
Q Consensus 831 L~l~G~E~~~i~ 842 (896)
++ +|+| ++|.
T Consensus 111 i~-~GD~-levD 120 (121)
T cd01579 111 FE-QGDQ-LELP 120 (121)
T ss_pred HC-CCCE-EEEC
T ss_conf 46-9998-9840
No 37
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=99.95 E-value=1.1e-26 Score=214.14 Aligned_cols=155 Identities=26% Similarity=0.427 Sum_probs=110.2
Q ss_pred EEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEE
Q ss_conf 58999658857233164565554473788898749886563145653023577766520360122321257776577224
Q gi|254780451|r 667 RILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTI 746 (896)
Q Consensus 667 rvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~ 746 (896)
|+ .++||+|+||+|.|+ +||... +.+.|.+..|.+.+ + .|.
T Consensus 3 rv-~~~GDnIdTD~I~P~----------~~l~~~---------------~~~~l~~~~f~~~~--------p----~f~- 43 (163)
T PRK00439 3 RV-WKFGDNIDTDVIIPG----------RYLNTS---------------DPDELAKHAMEDAD--------P----EFA- 43 (163)
T ss_pred CE-EECCCCCCHHHCCCH----------HHHCCC---------------CHHHHHHHCCCCCC--------C----CCC-
T ss_conf 16-877999886437527----------665659---------------97788774135668--------6----400-
Q ss_pred ECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 53899787379999989981998899946777867307999886676170899976478988850535523223317898
Q gi|254780451|r 747 HYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGI 826 (896)
Q Consensus 747 ~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~ 826 (896)
.+++. + -|||||+|||||||||||+.+.+.+||+||||+||+|||+.|++++|+++|+.++
T Consensus 44 --------------~~~~~-g--dIiVaG~NFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~in~Gl~~i~~~~-- 104 (163)
T PRK00439 44 --------------KKVKP-G--DIIVAGKNFGCGSSREHAPLALKAAGVSAVIAKSFARIFFRNAINIGLPVLECPE-- 104 (163)
T ss_pred --------------CCCCC-C--CEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCEEECCC--
T ss_conf --------------14668-7--5899688516888679999999985987998523789998328877995680565--
Q ss_pred CHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHH
Q ss_conf 98881989743899726322589973899998189967999999873899999999909836898887
Q gi|254780451|r 827 SWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQ 894 (896)
Q Consensus 827 ~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~ 894 (896)
.+.+. +|+ .++|. +..+ . ++ ...+|.+..++ .+ ++.+.+++++||+++|+.|.
T Consensus 105 -~~~i~-~gd-~i~vD----~~~g-~--v~-n~t~g~~~~~~---pl-~~~~~eii~aGGl~~y~kk~ 157 (163)
T PRK00439 105 -ADKIE-DGD-EVEVD----LETG-V--IK-NLTKGEEYKAK---PI-PEFLLEILKEGGLLEYLKKH 157 (163)
T ss_pred -HHHCC-CCC-EEEEE----CCCC-E--EE-ECCCCEEEEEE---CC-CHHHHHHHHCCCHHHHHHHH
T ss_conf -65446-899-99997----7799-8--99-75698499853---59-99999999839999999986
No 38
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.93 E-value=4.6e-26 Score=209.51 Aligned_cols=71 Identities=42% Similarity=0.659 Sum_probs=65.1
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEE
Q ss_conf 8999467778673079998866761708999764789888505355232233178989888198974389972
Q gi|254780451|r 770 LVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIR 842 (896)
Q Consensus 770 lVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~ 842 (896)
+|+|||+|||||||||||+++++++|++||||+||+|||+.|++++|+|||+|.+++||++|. +| |.++|.
T Consensus 17 ~iiVag~nfG~GSSRE~A~~~l~~~Gi~~ViA~SfarIf~~N~~n~Gllpl~~~~~~d~~~i~-~g-D~l~i~ 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKLH-TG-DELDIY 87 (88)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCEEEEECCHHHHHCCC-CC-CEEEEC
T ss_conf 799966754778518899999998496199973299999999987892148867988995079-99-889861
No 39
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit; InterPro: IPR011827 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry is most closely related to the 3-isopropylmalate dehydratase IPR004431 from INTERPRO. It also includes members, which cluster with other genes of leucine biosynthesis. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=99.92 E-value=4.4e-25 Score=202.32 Aligned_cols=154 Identities=27% Similarity=0.372 Sum_probs=109.6
Q ss_pred EEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCC-HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEC
Q ss_conf 9965885723316456555447378889874988-656314565302357776652036012232125777657722453
Q gi|254780451|r 670 CLLGDKITTDHISPAGSIPLQSAAASYLRQRGVK-EKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHY 748 (896)
Q Consensus 670 ~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~-~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~ 748 (896)
.||||+|.||.|.|+ +||+. .. +..|-+| .|.-++ - -|+
T Consensus 4 wkFGDdvDTD~IIPG----------rYLR~--~~D~~eLA~h-------------aM~g~~--P----------eF~--- 43 (159)
T TIGR02087 4 WKFGDDVDTDVIIPG----------RYLRT--TDDPDELASH-------------AMEGID--P----------EFA--- 43 (159)
T ss_pred EECCCCCCCCEECCC----------CCCCC--CCCHHHHHHH-------------CCCCCC--C----------CHH---
T ss_conf 760686467704585----------22575--4777889987-------------055899--6----------313---
Q ss_pred CCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECC-CCCC
Q ss_conf 899787379999989981998899946777867307999886676170899976478988850535523223317-8989
Q gi|254780451|r 749 PSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFG-KGIS 827 (896)
Q Consensus 749 p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~-~~~~ 827 (896)
++-...=|||||||||||||||.||++-+.+||+|||||||+||.-.|=||.|+-++... +..+
T Consensus 44 ---------------~kvr~GDviVAGkNFGcGSSREQA~~ALK~aGv~aviA~SFARIFYRNAIN~GLP~i~~~e~vte 108 (159)
T TIGR02087 44 ---------------KKVREGDVIVAGKNFGCGSSREQAALALKAAGVAAVIAESFARIFYRNAINIGLPLIEAKEDVTE 108 (159)
T ss_pred ---------------HHCCCCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEEEECCCHHHHHHHHCCCCEEEECCCCEE
T ss_conf ---------------40789978871416477887788999997479048985201660103233325202631689650
Q ss_pred HHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHHHH
Q ss_conf 8881989743899726322589973899998189967999999873899999999909836898887
Q gi|254780451|r 828 WKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQ 894 (896)
Q Consensus 828 ~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvlr~ 894 (896)
. ++ +||+ ++|.... + .++. ..+++ ++ .++-.++-.++.++.||+|+|+.|.
T Consensus 109 ~--~~-dGD~-V~vdl~~----g---eir~-~~~~~--~~--~~~~~~df~L~Il~~GGLl~y~kK~ 159 (159)
T TIGR02087 109 L--IK-DGDE-VEVDLEK----G---EIRK-VNGKE--VY--KGRPLPDFLLEILEEGGLLEYLKKR 159 (159)
T ss_pred E--EC-CCCE-EEEECCC----C---EEEE-ECCCE--EE--ECCCCCCHHHHHHHCCCEEEECCCC
T ss_conf 2--13-7887-8997576----6---0888-57950--78--6468985589998718802201259
No 40
>KOG0454 consensus
Probab=99.88 E-value=1.7e-23 Score=190.75 Aligned_cols=421 Identities=19% Similarity=0.141 Sum_probs=266.4
Q ss_pred CCCCCCHHHHHHHHHCCCCCCC-CCCCCCCCCCHHHEECCCCHHHHH--HHHHHHHHHHHCCCCHHHCCCCCCEEEEEEC
Q ss_conf 8665799999998612355457-776636453252200000357999--9999999999719999992878981399868
Q gi|254780451|r 56 DGCTVTKEQIHAFVKWLDNKGT-VESEVSYRFSRVLMQDFTGVPAVV--DLAAMRDAIVVLGGDPQNINPLVPVDLVIDH 132 (896)
Q Consensus 56 ~~~~~~~~~~~~~~~w~~~~~~-~~~ei~f~p~Rv~~qD~Tg~pa~v--dlaamR~~~~~~g~dp~~inp~vp~dlviDH 132 (896)
|+.+++++++.+-.. .... .+-+ +..+--++|-|--..+... -..-+|++++ -.|++|| -+.+||
T Consensus 65 dp~~vtd~i~a~~~e---rsL~ymGl~-pnt~v~s~~~dkVfigsctn~riedlr~aAa--Vv~g~Ki------a~n~k~ 132 (502)
T KOG0454 65 DPMTVTDKILARASE---RSLVYMGLN-PNTNVDSLMTDKVFIGSCTNIRIEDLREAAA--VVDGEKI------AVNPKH 132 (502)
T ss_pred CCCCCCHHHHHHHHH---HCEEECCCC-CCCCCCEEEECCEECCCCCCCCHHHHHHHHH--CCCCCEE------EECCCC
T ss_conf 974213688875533---110202678-8865204662334415555420887765441--2054045------753651
Q ss_pred CCHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE
Q ss_conf 32110059988--9998999887542678999987742148807860887621677898633511310368861798301
Q gi|254780451|r 133 SLIVDYSGNKD--AVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDT 210 (896)
Q Consensus 133 sv~vd~~g~~~--a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdt 210 (896)
.+.|--.|.-. +..+-..++| | |-| .-|-..-- +|-.-|-=.|.||- ++...+.+.++++
T Consensus 133 am~vpgsglvkk~aeaegld~if--~-eag--F~wreagc-s~clgmnpd~l~~y------ercastsnRnfEg------ 194 (502)
T KOG0454 133 AMFVPGSGLVKKVAEAEGLDRIF--N-EAG--FYWREAGC-SFCLGMNPDGLCHY------ERCASTSNRNFEG------ 194 (502)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH--H-HHC--EEHHHCCC-CCCCCCCCHHCCHH------HHHHHCCCCCCCC------
T ss_conf 38806831667688887667887--7-613--20132266-41136880001378------8754236878610------
Q ss_pred EEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 32068876444520123203434899999707751411672899999767786443688999999984102212127999
Q gi|254780451|r 211 CVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEF 290 (896)
Q Consensus 211 lVGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf 290 (896)
+.|+|||||+.++.+.++.|+|+.++.-........+++|..+.+.+.|+.+.-..++|+++-++.-.-..+...+..||
T Consensus 195 rqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~~ia~ds~t~i~~~at~e~ 274 (502)
T KOG0454 195 RQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIVSIATDSSTDIPRVATMEF 274 (502)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCEECCCC
T ss_conf 01655432222056775255465324634455642124799835872798865333444301110122222431002557
Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 61550017875632120001003720377519989999998639998899999987464102367676678863069999
Q gi|254780451|r 291 FGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKL 370 (896)
Q Consensus 291 ~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~viei 370 (896)
-+-.. +|+|+.|+|+|||..+-+-|-+|+|++-.|+-|-...+++ .+.+ |+.+. ..+.|...+.+
T Consensus 275 ~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~----~f~~--------~~~dg--~~k~~~~dFv~ 339 (502)
T KOG0454 275 SSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILS----CFYE--------VALDG--LPKSFVTDFVL 339 (502)
T ss_pred CCCCC-CCCCCCEEEEEHHHHHHCCCCCCCCHHHHCCCCCCHHHHH----HHHH--------HEECC--CCHHHCCCEEC
T ss_conf 88644-3357430011001453077676357555201555366553----2122--------10247--82331223221
Q ss_pred ECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 80314301226566564136777301166876640011002321024578888875554457531046765459998778
Q gi|254780451|r 371 DLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGA 450 (896)
Q Consensus 371 DLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaA 450 (896)
|.+.++|...-++. ||. |..-+-+|-.|.+.++|+|+-..-.+-|+
T Consensus 340 ~vE~~~~~siii~~-DNF-------------------------------GCGSSREHAPv~L~~~GakaivA~Sya~I-- 385 (502)
T KOG0454 340 PVEPLRKYSIIIGG-DNF-------------------------------GCGSSREHAPVCLGAAGAKAIVAPSYARI-- 385 (502)
T ss_pred CCCCCCEEEEEECC-CCC-------------------------------CCCCCCCCCCCHHHHCCCCEECCHHHHHH--
T ss_conf 46556436799645-775-------------------------------55554555730232212314116038999--
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCHHHHH-----HHHHCC---CHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 8999889864987586730797016189999-----999858---85777750530205532242127776883022101
Q gi|254780451|r 451 GLLARNAVRAGLKSKPWVKTSCAPGSQVSYE-----YLVQAG---LVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVI 522 (896)
Q Consensus 451 gllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~-----~L~~~G---ll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i 522 (896)
.+|+-++.|++++. -+.+.|.-+-++. .+..+| ++.+.+..+..-+.|-|..|.++. ++ .+-...
T Consensus 386 --FfrN~~atG~l~~~--~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~k~~f~lkP~~~aclV~~--ad-~I~~~~ 458 (502)
T KOG0454 386 --FFRNSVATGELPPL--PSEVRVCDECVTGDVYTVELSVDGGNQLINHTTGKVYFKLKPFGDACLVID--AD-GIFAYA 458 (502)
T ss_pred --HHHHHHHCCCCCCC--CCEEEECCCCEECCEEEEECCCCCCCEEEEEECCCCEEECCCCCCCCCCCC--CH-HHHHHH
T ss_conf --99767752874689--850465100022012357713577650466505643230475545476557--03-787763
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCC
Q ss_conf 13663587863367666654685433100059789999985161
Q gi|254780451|r 523 HQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGN 566 (896)
Q Consensus 523 ~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~ 566 (896)
++. ..|.|.||||++||+-.-.+.|||||.+|+|++++|+
T Consensus 459 ~ke----~mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454 459 RKE----GMISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred CCC----CCCCHHHHCCCCCCCCCCCCEEECCCCCHHHHHHCCC
T ss_conf 311----3502455508433673335357705563123431278
No 41
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=99.88 E-value=9.7e-22 Score=177.92 Aligned_cols=164 Identities=25% Similarity=0.397 Sum_probs=112.9
Q ss_pred EEEEEC-CCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEE
Q ss_conf 899965-8857233164565554473788898749886563145653023577766520360122321257776577224
Q gi|254780451|r 668 ILCLLG-DKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTI 746 (896)
Q Consensus 668 vL~~lG-D~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~ 746 (896)
...+|+ |||.||+|.|+ +||+. +.+..| .++.|...|..- ..|.+
T Consensus 10 ~~~pl~~dnIDTD~IIP~----------~fLk~--i~~~gl-------------~k~~f~~~r~~~---------PdF~~ 55 (191)
T COG0066 10 RVWPLGRDNVDTDQIIPK----------RFLKT--ITRTGL-------------GKHLFEDWRYLD---------PDFVL 55 (191)
T ss_pred EEEECCCCCCCCCCCCCH----------HHHCC--CCHHHH-------------HHCCCCCCCCCC---------CCHHH
T ss_conf 597068887760438628----------87453--687466-------------421531010249---------64321
Q ss_pred ECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 53899787379999989981998899946777867307999886676170899976478988850535523223317898
Q gi|254780451|r 747 HYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGI 826 (896)
Q Consensus 747 ~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~ 826 (896)
+.|. || ..-|+|||+|||||||||||+.+-+-.|++||||+||+||+..|.++-|+||+.-.+++
T Consensus 56 n~~~------------yq---~g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~ 120 (191)
T COG0066 56 NVPP------------YQ---GGDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEED 120 (191)
T ss_pred CCCC------------CC---CCCEEEECCCCCCCCCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCCCCEECCHHH
T ss_conf 5886------------67---86489966887788527789999997592499936299998701565086755518388
Q ss_pred CHHHHCC-CCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCC----CHHHHHHHHH
Q ss_conf 9888198-9743899726322589973899998189967999999873899999999909----8368988872
Q gi|254780451|r 827 SWKNLNI-KGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNG----GILQAVLRQL 895 (896)
Q Consensus 827 ~~~~L~l-~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~G----GiL~yvlr~l 895 (896)
--+.+.. .|+ .+++.. + .+ +|+..++....|+. .+--.+.+++| |++.|..+++
T Consensus 121 ~~~l~~~~~g~-~i~VDL-~----~~----~v~~~~~~~~~f~i-----~~f~~~~L~~GlD~iGlt~~~~~~i 179 (191)
T COG0066 121 VTELFEDVPGD-EVTVDL-E----TG----EVTNPTGGEEPFEI-----DDFRREILLNGLDDIGLTLQHKKEI 179 (191)
T ss_pred HHHHHHHCCCC-EEEEEC-C----CC----EEEECCCCEEECCC-----CHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99998757898-899986-8----89----69817998787259-----9899999985884113599988766
No 42
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.86 E-value=3.3e-22 Score=181.35 Aligned_cols=70 Identities=33% Similarity=0.544 Sum_probs=58.7
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEE
Q ss_conf 99946777867307999886676170899976478988850535523223317898988819897438997
Q gi|254780451|r 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINI 841 (896)
Q Consensus 771 VViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i 841 (896)
|+|||+|||||||||||+++.+.+|+|||||+||+|||++|++++|+||+++.+.+ .+.+..+..+.++|
T Consensus 20 Ilvag~NFG~GSSREhA~~al~~~Gi~~VIa~SFa~If~~N~~n~GlLpi~~~~~~-~~~~~~~~g~ei~V 89 (91)
T cd01577 20 IIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADED-VEEVEAKPGDEVEV 89 (91)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCEEEECHHH-HHHHHCCCCCEEEE
T ss_conf 89956865778528999999998495499972399999998887785128868899-99997099988998
No 43
>TIGR00117 acnB aconitate hydratase 2; InterPro: IPR004406 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents bacterial aconitase B (AcnB) enzymes, which can switch between aconitase enzyme activity and post-translational gene regulation. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase .; GO: 0003994 aconitate hydratase activity, 0005515 protein binding, 0051539 4 iron 4 sulfur cluster binding, 0006099 tricarboxylic acid cycle.
Probab=99.83 E-value=7.6e-19 Score=156.75 Aligned_cols=453 Identities=24% Similarity=0.331 Sum_probs=281.6
Q ss_pred HHHCCCHHHHHHHHHHHHCC-------------------CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCH
Q ss_conf 54457119999998874048-------------------66579999999861235545777663645325220000035
Q gi|254780451|r 37 ISRLPCSMKVLLENLLRFED-------------------GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGV 97 (896)
Q Consensus 37 ~~~lP~s~rillEn~~R~~~-------------------~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~ 97 (896)
-.++|..+---+.+-.|..- |.++.++.+-....- ..-.++.-..-....+-.||.||-
T Consensus 344 ~g~~p~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~cg~--~g~~pg~~c~p~~~~~g~~d~~g~ 421 (864)
T TIGR00117 344 GGRIPLLIGRGLTDKAREALGLGPSPLFKKPSAPADDGKGFTLAQKLVGKACGV--KGIRPGTYCEPKLTTVGSQDTTGP 421 (864)
T ss_pred CCCCEEEECCCCHHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 674113430310023466516872100004444322344303566665323032--224676433531000366444443
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 79999999999999719999992878981399868321100599889998999887542678999987742148807860
Q gi|254780451|r 98 PAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVP 177 (896)
Q Consensus 98 pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~p 177 (896)
+.--++.- ++-+|.+...+ + ..|-...++.+-..... +...-.|+. + .+--...
T Consensus 422 ~~~d~~~~----~~~~~~~~~~~---------~------~~~c~~~~~p~p~d~~~--~~~~p~~~~--~---~gg~~~~ 475 (864)
T TIGR00117 422 LTRDELKE----LACLGFDADLV---------L------QSFCHTAAYPKPVDVST--HATLPDFIT--N---RGGVALR 475 (864)
T ss_pred CCHHHHHH----HHHHCCCCCHH---------H------HHHHHHHCCCCCCCCCC--CCCCCHHHH--C---CCCEEEC
T ss_conf 20566666----66512563134---------5------54443303676443310--001212343--1---5760224
Q ss_pred CCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEE-EECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEE
Q ss_conf 8876216778986335113103688617983013-206887644452012320343489999970775141167289999
Q gi|254780451|r 178 PGTGICHQINLEYLGQSVWTKNENGENIAYPDTC-VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFE 256 (896)
Q Consensus 178 PG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdtl-VGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~ 256 (896)
||.|++|.-.- .+..||++ .|.||||..-=|+. |-.|-| +-+-++.+|. .-+.+|+.+-++
T Consensus 476 pgdg~~~~w~~---------------~~~~pd~~g~ggd~~~~~p~g~~-~p~g~g-~~~~~~~~g~-~p~~~p~~~~~~ 537 (864)
T TIGR00117 476 PGDGVIHSWLN---------------RLLLPDTLGTGGDSHTRFPLGIS-FPAGSG-LVAFAAATGV-LPLDLPESVLVR 537 (864)
T ss_pred CCCCHHHHHHH---------------HHCCCCCCCCCCCCCCCCCCEEC-CCCCCC-HHHHHHHHCC-CCCCCCCCEEEE
T ss_conf 66413677665---------------41265223578754321211001-456552-3334454313-325664000011
Q ss_pred EECCCCCCCCHHHHHHHHHHHHCCCCC------------CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCH
Q ss_conf 976778644368899999998410221------------21279996155001787563212000100372037751998
Q gi|254780451|r 257 VTGSLQEGVTATDLVLTITQMLRKEGV------------VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDR 324 (896)
Q Consensus 257 L~G~L~~gVtakDiiL~i~~~Lr~~Gv------------vgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De 324 (896)
++|+++||++-+|++-.+--..-+.|. .|+++|.- |+-.+.++...-+.....|-.+....+...+
T Consensus 538 ~~g~~~pg~~~~d~~~~~p~~~~~~g~~~~~~~~~~~~~~g~~~~~~--g~pd~~~~~~~~~~d~~~~~~~~~~~~~~~~ 615 (864)
T TIGR00117 538 FKGELQPGITLRDLVNAIPWYAIKQGLLTVEKKGKVNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNK 615 (864)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCEEEEC--CCCCCHHHHHHHHCCCHHHHHHCCCEEECCH
T ss_conf 21334667227777654223444202201025662010145123314--7774102222211000011100110232130
Q ss_pred H-HHHHHHHC----------CCCHH-----HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCC-CCHHCCCCCCCC
Q ss_conf 9-99999863----------99988-----9999998746410236767667886306999980314-301226566564
Q gi|254780451|r 325 G-TIDYLRLS----------GRSNS-----RVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNV-SPSVAGPRRPES 387 (896)
Q Consensus 325 ~-T~~YL~~t----------GR~~~-----~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~i-eP~VAgP~~P~d 387 (896)
+ ..+||+.. |-.+. .+...++|.....+. ..|.+++|..++++|+.++ +|.+++|..|+|
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~w~~~p~~~---~~d~~~~~~~~~~~~~~~~~~p~~~~p~dpd~ 692 (864)
T TIGR00117 616 EPVIEYLKSNIVLLKWLIAEGYGDKRTLLRRIDGLEEWLANPELL---EGDADAEYAAVIEIDLAEIKEPILAAPNDPDD 692 (864)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHCCHHHHCCCCEECCCCCHH
T ss_conf 257887630156666776404312688999988888752361010---56554201332110244511220106897212
Q ss_pred EEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 13677730116687664001100232102457888887555445753104676545999877889998898649875867
Q gi|254780451|r 388 RLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPW 467 (896)
Q Consensus 388 ~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~ 467 (896)
..+++++..+. ..+..+.+++ .+||||.. |-.-..+++-+.+ +..-..-
T Consensus 693 ~~~~~~~~~~~------~g~~p~~~~~------------------~~~g~c~~--~~g~~~~~~~~~~-----~~~g~~~ 741 (864)
T TIGR00117 693 VKPLSEVLGDT------TGKRPHAIDE------------------VFIGSCLT--NIGHFRAAGKLLD-----GAPGPLP 741 (864)
T ss_pred HHHHHHHHHHC------CCCCCCHHHH------------------HHHHHHHH--HHHHHHHHHHHHH-----CCCCCCC
T ss_conf 56777764101------3666420223------------------33323443--2234556677763-----2687545
Q ss_pred CEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 30797016189999999858857777505302055322421277768830221011366358786336766665468543
Q gi|254780451|r 468 VKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDV 547 (896)
Q Consensus 468 Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~ 547 (896)
.+..+.|-++.-...+.+.|+...|-++|+..--|||..|+||.... .++. . .+.+..|||..|++...
T Consensus 742 ~~~w~~pp~~~d~~~~~~~g~~~~~~~~g~~~~~pgc~~c~g~~~~~--------~d~~-~--~~~~~~~~~~~~~g~g~ 810 (864)
T TIGR00117 742 GRLWVAPPTRLDEQELTEEGYYGIFGAAGARTEVPGCSLCLGNQARV--------EDGA-T--VFSTSTRNFPNRLGKGA 810 (864)
T ss_pred CEEEECCCCCCCHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCCCHH--------CCCC-E--EEEECCCCCCCCCCCCC
T ss_conf 31574175422057765322021010245421167410002651000--------0561-4--76402344430026652
Q ss_pred CCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 310005978999998516122231002355488886320015688857888887641583
Q gi|254780451|r 548 EANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTC 607 (896)
Q Consensus 548 ~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~ 607 (896)
+. ||+|.++.++.|+.|++ |+.+|...++.+.+.+
T Consensus 811 ~~-~~~~~~~~~~~~~~g~~------------------------p~~~~~~~~~~~~~~~ 845 (864)
T TIGR00117 811 KV-YLGSAELAAVCALLGKL------------------------PTPEEYLTLVSEKLEP 845 (864)
T ss_pred EE-EECHHHHHHHHHHHHCC------------------------CCHHHHHHHHHHHHHH
T ss_conf 02-21114677899876046------------------------7667888888766433
No 44
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.81 E-value=2e-20 Score=168.37 Aligned_cols=99 Identities=25% Similarity=0.372 Sum_probs=74.2
Q ss_pred CCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCC
Q ss_conf 58857233164565554473788898749886563145653023577766520360122321257776577224538997
Q gi|254780451|r 673 GDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKE 752 (896)
Q Consensus 673 GD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~ 752 (896)
.|||.||.|.|+ +||......+. .|.+..|.+.+ ..+
T Consensus 3 ~DNIDTD~IiP~----------ryl~~~~~~~~-------------~~~~~~~~~~d--p~f------------------ 39 (129)
T cd01674 3 ADNLNTDGIYPG----------KYTYQDDITPE-------------KMAEVCMENYD--SEF------------------ 39 (129)
T ss_pred CHHCCHHHCCCH----------HHCCCCCCCHH-------------HHHHHHCCCCC--CCC------------------
T ss_conf 234666325155----------54587789877-------------87344321369--753------------------
Q ss_pred EEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCC
Q ss_conf 873799999899819988999467778673079998866761708999764789888505355232233178
Q gi|254780451|r 753 ELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGK 824 (896)
Q Consensus 753 ~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~ 824 (896)
+.++++ .-|+|||+|||||||||||+.+.+.+|++||||+||+|||..|.++.|+||++.++
T Consensus 40 -------~~~~k~---g~ILVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~iNnGLlpI~lP~ 101 (129)
T cd01674 40 -------STKTKQ---GDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred -------CCCCCC---CCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCEEECHH
T ss_conf -------333678---88899668657673488999999984997999852999999777871888687649
No 45
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.71 E-value=9.5e-17 Score=141.46 Aligned_cols=158 Identities=24% Similarity=0.361 Sum_probs=103.0
Q ss_pred EEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCC-CCE
Q ss_conf 5899965885723316456555447378889874988656314565302357776652036012232125777657-722
Q gi|254780451|r 667 RILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKG-GYT 745 (896)
Q Consensus 667 rvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~eg-g~T 745 (896)
...-+.++||.||-|.|| +||+. +....| -.+.|.+.|... .|.+. .|-
T Consensus 10 ~a~pl~~~nIDTD~IiP~----------rfLk~--~~~~gl-------------g~~lF~d~R~~~-----~g~~~~dF~ 59 (201)
T PRK01641 10 LAVPLDRANVDTDQIIPK----------QFLKR--ITRTGF-------------GKHLFDDWRYLD-----DGQPNPDFV 59 (201)
T ss_pred EEEECCCCCCCCCCCCHH----------HHCCC--CCHHHH-------------HHHHCCCCCCCC-----CCCCCCCCC
T ss_conf 998468777772128269----------87597--886265-------------886220121468-----999787755
Q ss_pred EECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 45389978737999998998199889994677786730799988667617089997647898885053552322331789
Q gi|254780451|r 746 IHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKG 825 (896)
Q Consensus 746 ~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~ 825 (896)
.+.|. |+.+. |+|||+|||||||||||..+-+-.|+|||||.||+.|++.|-.+.|+||++...
T Consensus 60 LN~~~------------~~~a~---ILvag~NFGCGSSREhAvwAL~d~Gir~VIA~SFadIF~~Nc~kNGlLpI~L~~- 123 (201)
T PRK01641 60 LNQPR------------YQGAS---ILLAGENFGCGSSREHAPWALADYGFRVVIAPSFADIFYGNCFKNGLLPIVLPE- 123 (201)
T ss_pred CCCCC------------CCCCE---EEEECCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCEEECCH-
T ss_conf 67756------------68981---899678767775088999999985998999725999999889874976065099-
Q ss_pred CCHHHHC----CCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCC
Q ss_conf 8988819----89743899726322589973899998189967999999873899999999909
Q gi|254780451|r 826 ISWKNLN----IKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNG 885 (896)
Q Consensus 826 ~~~~~L~----l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~G 885 (896)
++.+.|- -+....++|.. + .+.+ +..+ ....|+ + .+.-.+.+.+|
T Consensus 124 ~~i~~L~~~~~~~p~~~i~IDL-~----~q~I----~~~~-~~~~F~----I-d~~~k~~LL~G 172 (201)
T PRK01641 124 EEVDELFKLVEANPGAELTVDL-E----AQTV----TAPD-KTYPFE----I-DEFRRHCLLNG 172 (201)
T ss_pred HHHHHHHHHHHCCCCCEEEEEE-C----CCEE----EECC-EEEEEE----E-CHHHHHHHHHC
T ss_conf 9999999999719997468970-4----5889----9399-458889----8-99999999919
No 46
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit; InterPro: IPR011824 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry contains predominantly bacterial 3-isopropylmalate dehydratase enzymes. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases 4.2.1 from EC and bind a [4Fe-4S]-cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=99.39 E-value=8.5e-14 Score=119.88 Aligned_cols=153 Identities=28% Similarity=0.368 Sum_probs=100.1
Q ss_pred EEEECCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEC
Q ss_conf 99965885723316456555447378889874988656314565302357776652036012232125777657722453
Q gi|254780451|r 669 LCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHY 748 (896)
Q Consensus 669 L~~lGD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~ 748 (896)
..++||+|.||.|.|| +||... .+.++-.| +|- ..+-.|.
T Consensus 3 ~~~~Gdn~~td~iiPa----------rylnt~--~~~ela~~--------~me-----------------d~~~~f~--- 42 (156)
T TIGR02084 3 VLKYGDNVDTDVIIPA----------RYLNTS--DPKELAKH--------CME-----------------DLDKEFK--- 42 (156)
T ss_pred EEEECCCCCCCCCCCH----------HHHCCC--CHHHHHHH--------HHH-----------------HHHHHHH---
T ss_conf 2540575464511221----------331135--76789999--------886-----------------3356776---
Q ss_pred CCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf 89978737999998998199889994677786730799988667617089997647898885053552322331789898
Q gi|254780451|r 749 PSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISW 828 (896)
Q Consensus 749 p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~ 828 (896)
++....-|+++|+|||+|||||||....+.-||.+||||||+||.-.|-++.|+-=++..+ ..
T Consensus 43 ---------------~~~~~G~i~v~G~nfG~GssrehaP~~ik~~G~~~~iaksfarif~rn~iniGl~i~e~~e--~~ 105 (156)
T TIGR02084 43 ---------------KKVKEGDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGLPIVESEE--AV 105 (156)
T ss_pred ---------------HHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH--HH
T ss_conf ---------------5421575687214336777644342221003720002446777876534541213200467--88
Q ss_pred HHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCEEEEEEEEEECCHHHHHHHHCCCHHHHHH
Q ss_conf 8819897438997263225899738999981899679999998738999999999098368988
Q gi|254780451|r 829 KNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVL 892 (896)
Q Consensus 829 ~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yvl 892 (896)
+.+. .|+ .+.+...+.+-. .++ .+ .+|.. +-+-+.=.+.++++|.++|+.
T Consensus 106 ~~~~-~Gd-~~~vd~~~G~~~------n~~--~~--~~~~~--~~fP~~~~~i~~~~G~~~~~~ 155 (156)
T TIGR02084 106 DEIE-EGD-EVEVDLEKGIIK------NVT--KG--KEYKA--QPFPEFLQEILKAGGLLNYVK 155 (156)
T ss_pred HHHH-CCC-EEEEEHHHHHHH------HHH--CC--CCCCC--CCCHHHHHHHHHCCCHHHHHC
T ss_conf 6530-587-588733022666------520--46--42112--112189999985154444651
No 47
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit; InterPro: IPR004431 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry represents a region of the small subunit. The structure of the Pyrococcus horikoshii small subunit (O59393 from SWISSPROT) has recently been determined . As expected the structure of this polypeptide is similar to that of aconitase domain 4, though one alpha helix is replaced by a short loop with relatively high temperature factor values. This loop region is thought to be important for substrate recognition. Unlike other aconitase family proteins, this subunit formed a tetramer through disulphide linkages, though it is not expected to interfere with its interaction with the large subunit. These disulphide linkages would be expected to confer thermostability on the enzyme, reflecting the thermophilic lifestyle of the organism. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures. All are dehydratases (4.2.1 from EC) and bind a [4Fe-4S]-cluster. 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The archaeal leuD-like proteins are not included in group.; GO: 0003861 3-isopropylmalate dehydratase activity, 0009098 leucine biosynthetic process, 0009316 3-isopropylmalate dehydratase complex.
Probab=97.84 E-value=6.2e-06 Score=62.44 Aligned_cols=119 Identities=22% Similarity=0.402 Sum_probs=76.0
Q ss_pred CCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCC
Q ss_conf 58857233164565554473788898749886563145653023577766520360122321257776577224538997
Q gi|254780451|r 673 GDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKE 752 (896)
Q Consensus 673 GD~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~ 752 (896)
.-++.||.|.|. +||+. +....| -++.|..-|.....-+ ....-.+...+|..+
T Consensus 17 ~~~~d~d~~~p~----------~~l~~--~~~~g~-------------g~~~~~~w~~~~d~~g-~~p~p~~~l~~p~~~ 70 (194)
T TIGR00171 17 AANVDTDAIIPK----------QFLKR--ITRTGF-------------GKHLFYDWRFLKDDEG-KEPNPDFVLNFPPYQ 70 (194)
T ss_pred CCCCCCHHHHHH----------HHHHH--HHHCCC-------------CCHHHHHHHHHCCCCC-CCCCCCEEECCCCCC
T ss_conf 122540010027----------88877--764022-------------0011111111001257-777763464144435
Q ss_pred EEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHH
Q ss_conf 8737999998998199889994677786730799988667617089997647898885053552322331789898881
Q gi|254780451|r 753 ELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNL 831 (896)
Q Consensus 753 ~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L 831 (896)
+...++..|+|+||||||+||.....-.|.|.+||.||+-|...|-.+.|+||+......--+.+
T Consensus 71 --------------g~~~l~~~g~~~gcg~~~~~~pw~l~d~g~~~~~~p~~~d~~~~~~~~~~~lp~~~~~~~~~~~~ 135 (194)
T TIGR00171 71 --------------GASILLAGGENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLPEDEVEELF 135 (194)
T ss_pred --------------CCEEEEECCCCCCCCCCCCCCCCEECCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf --------------61478862763456766444661000136246651311123312322345110002677888776
No 48
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=96.46 E-value=0.018 Score=37.15 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=12.4
Q ss_pred EECCHHHHHHHHHHCCCCCCC
Q ss_conf 005978999998516122231
Q gi|254780451|r 551 YLLSPPLVVAYALAGNVRKNL 571 (896)
Q Consensus 551 yLaSP~lVvA~AiaG~I~~d~ 571 (896)
|=|---||+-.|-.|.+-.|+
T Consensus 497 FpagSGlVAfaaatG~mpl~m 517 (841)
T PRK09238 497 FPAGSGLVAFAAATGVMPLDM 517 (841)
T ss_pred ECCCCCHHHHHHHCCCCCCCC
T ss_conf 058873025677618766788
No 49
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=95.36 E-value=0.066 Score=33.04 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=18.9
Q ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHH--HCCEEEEEECCHH
Q ss_conf 8199889994677786730799988667--6170899976478
Q gi|254780451|r 765 VDQVPLVVFAGVEYGNGSSRDWAAKGTR--LLGVRSVIAESFE 805 (896)
Q Consensus 765 ~~~~plVViAG~~YG~GSSRdwAAkgp~--lLGVkAVIA~SFe 805 (896)
+-|+| +|||=..|-+-+-.|.++..-. -+|+++++++.|+
T Consensus 369 ~fG~p-vVVAIN~F~~DT~~Ei~~i~~~~~~~g~~~~~s~~wa 410 (555)
T pfam01268 369 KFGVP-VVVAINRFPTDTDAELALVRELCEEAGAEAAVSEHWA 410 (555)
T ss_pred HCCCC-EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHH
T ss_conf 71997-6999447899879999999999998699899940454
No 50
>pfam04412 DUF521 Protein of unknown function (DUF521). Family of hypothetical proteins.
Probab=95.27 E-value=0.094 Score=31.91 Aligned_cols=65 Identities=31% Similarity=0.371 Sum_probs=49.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCC
Q ss_conf 7531046765459998778899988986498758673079701618999999985885777750530205532
Q gi|254780451|r 432 IASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 (896)
Q Consensus 432 IAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GC 504 (896)
+.+|| |---|..++..-|.++ +|+|+++.|++.+ --||.|++.+++.|+.+.|+++|..++.=.|
T Consensus 289 lV~lG-cPH~Sl~El~~la~ll------~gr~~~~~~~~~V-~Tsr~v~~~a~~~G~~~~LE~aGv~vv~DTC 353 (397)
T pfam04412 289 LVALG-CPHASLEELRELAELL------AGRKKAPGVPLWV-TTSRAVYSKAERAGYVDRLEAAGVKVVTDTC 353 (397)
T ss_pred EEEEC-CCCCCHHHHHHHHHHH------HCCCCCCCCEEEE-ECCHHHHHHHHHCCHHHHHHHCCCEEEEEEC
T ss_conf 79977-9999999999999997------2677789962999-8589999987766889999975998990265
No 51
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=94.45 E-value=0.14 Score=30.65 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=15.7
Q ss_pred CEECCC-CEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 141167-2899999767786443688999999
Q gi|254780451|r 245 ISMLLP-EVVGFEVTGSLQEGVTATDLVLTIT 275 (896)
Q Consensus 245 ~~~~vP-evigv~L~G~L~~gVtakDiiL~i~ 275 (896)
+...+| |-|..++||.+..=.+|..++-.++
T Consensus 113 ysqv~PmediNLHfTGD~hAit~AhNLlaA~i 144 (556)
T PRK13505 113 YAQVLPMEDINLHFTGDFHAITSANNLLAALI 144 (556)
T ss_pred CEEECCHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 20332167705645672889998888999999
No 52
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=94.39 E-value=0.082 Score=32.32 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=47.5
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCC
Q ss_conf 457531046765459998778899988986498758673079701618999999985885777750530205532
Q gi|254780451|r 430 VAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 (896)
Q Consensus 430 VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GC 504 (896)
+.+.+|| |---|..++..-|.++ +|+++++.+++.+. -||.|+ +++.|+.+.|+++|..++.=.|
T Consensus 279 ~DlV~lG-cPH~Sl~El~~la~ll------~gr~~~~~~~~~I~-Tsr~v~--a~~~G~~~~lE~aGv~vv~DTC 343 (389)
T cd01355 279 PDLVVLG-CPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTC 343 (389)
T ss_pred CCEEEEC-CCCCCHHHHHHHHHHH------HCCCCCCCCEEEEE-CCHHHH--HHHCCHHHHHHHCCCEEEEEEC
T ss_conf 1089977-9999999999999998------36777899629998-799999--7615889999974998993146
No 53
>pfam06434 Aconitase_2_N Aconitate hydratase 2 N-terminus. This family represents the N-terminal region of several bacterial Aconitate hydratase 2 proteins and is found in conjunction with pfam00330.
Probab=94.15 E-value=0.12 Score=31.08 Aligned_cols=118 Identities=24% Similarity=0.331 Sum_probs=63.0
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEE------------EEEECCHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9999899819988999467778673079998866761708------------9997647898885053552322331789
Q gi|254780451|r 758 DAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVR------------SVIAESFERIHRSNLIGMGVIPFAFGKG 825 (896)
Q Consensus 758 daA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLGVk------------AVIA~SFeRIHrsNLv~mGiLPL~F~~~ 825 (896)
+.-+..|+.+.|++-+ |.--|+||||--|.-.-..-+.+ .||---.+-|.-.-+---|-||++-
T Consensus 44 ~~I~~Lk~kg~~la~v-gdvvGtGSSRkSa~NsvLW~~g~diP~VPnkr~ggiv~G~kIAPIFfnT~edsGalPie~--- 119 (204)
T pfam06434 44 EQIAELKKKGHPLAYV-GDVVGTGSSRKSATNSVLWHIGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIEA--- 119 (204)
T ss_pred HHHHHHHHCCCCEEEE-CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCEECCEEEEECCCCCCEEEEE---
T ss_conf 9999998709978995-660256756421100256515688877872576686875634326884103368724686---
Q ss_pred CCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCCE-EEEEEEEEECCHHHHHHHHCCCHHHHHH-HHH
Q ss_conf 898881989743899726322589973899998189967-9999998738999999999098368988-872
Q gi|254780451|r 826 ISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGTF-KCVPIICCIDTLDEINHLKNGGILQAVL-RQL 895 (896)
Q Consensus 826 ~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~~-~~~~~~~r~dt~~E~~~~~~GGiL~yvl-r~l 895 (896)
|..++. +|+ .++|.-.+. ++...+|+. .+|. +-++.=.+.+||||-.+.|. |+|
T Consensus 120 -dv~~l~-tGd-vi~I~p~~g---------~i~~~~g~v~~~f~----l~p~~l~DevRAGGri~LIiGr~L 175 (204)
T pfam06434 120 -DVSSLN-TGD-VITIYPYEG---------KITKEDGEVISTFE----LKPNTLLDEVRAGGRIPLIIGRGL 175 (204)
T ss_pred -ECCCCC-CCC-EEEEECCCC---------EEECCCCCEEEEEE----CCCCCHHHHHHCCCCEEEEECHHH
T ss_conf -403166-798-899965788---------69769997898876----277427888754883799973456
No 54
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=93.37 E-value=0.092 Score=31.98 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=10.0
Q ss_pred EECCHHHHHHHHHHCCCCCCC
Q ss_conf 005978999998516122231
Q gi|254780451|r 551 YLLSPPLVVAYALAGNVRKNL 571 (896)
Q Consensus 551 yLaSP~lVvA~AiaG~I~~d~ 571 (896)
|=|---||+-.|-+|.+-.|+
T Consensus 499 FpAgSGlVAfAaatGvmpldm 519 (852)
T COG1049 499 FPAGSGLVAFAAATGVMPLDM 519 (852)
T ss_pred ECCCCCHHHHHHHCCCCCCCC
T ss_conf 058873134567518645788
No 55
>COG1679 Predicted aconitase [General function prediction only]
Probab=92.84 E-value=0.55 Score=26.31 Aligned_cols=212 Identities=17% Similarity=0.265 Sum_probs=109.0
Q ss_pred CEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHCCC-CCE------ECCCCEEEEEEECCCCCCCC
Q ss_conf 11310368861798301320688764445201232034348999997077-514------11672899999767786443
Q gi|254780451|r 194 SVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC-PIS------MLLPEVVGFEVTGSLQEGVT 266 (896)
Q Consensus 194 vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GVGg~eaea~mlGq-p~~------~~vPevigv~L~G~L~~gVt 266 (896)
+.|.+. .-++|-.+++|. +|.-.||...| .++|.|. |.| -+.|+ +-|++...+..-
T Consensus 137 ~AWaES---sAV~fANSVlGA--rTnReggp~aL---------~aAi~Gr~P~yG~hl~EnR~~~-~~v~ve~~~~~~-- 199 (403)
T COG1679 137 LAWAES---SAVSFANSVLGA--RTNREGGPLAL---------AAAITGRTPLYGLHLDENRRPT-VIVEVEFPPKED-- 199 (403)
T ss_pred EEEECC---CHHHHHHHHHHH--HCCCCCCHHHH---------HHHHHCCCCCCCCCCCCCCCCE-EEEEEECCCCCC--
T ss_conf 234201---112222232101--00566888999---------9999688852000233256604-999982477764--
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEE--EECCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 6889999999841022121279996155001787563212000100372037--75199899999986399988999999
Q gi|254780451|r 267 ATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCG--FFPVDRGTIDYLRLSGRSNSRVDLVE 344 (896)
Q Consensus 267 akDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~g--ifp~De~T~~YL~~tGR~~~~v~lve 344 (896)
|.-.-+++. ++|+.+.+.=|-+.....+++--+--|++-++++.+ +|-+...|=+|
T Consensus 200 --d~~~~~lGy-----~~G~~~~d~IP~~~~~~~p~~d~lKalgAA~atsgavam~HvegvTPE~--------------- 257 (403)
T COG1679 200 --DSEYGALGY-----LAGEAAGDGIPYFRLALFPSEDELKALGAAMATSGAVAMYHVEGVTPEA--------------- 257 (403)
T ss_pred --HHHHHHHHH-----HHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC---------------
T ss_conf --156678889-----9987605898725068999989999988987504760489861778665---------------
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC
Q ss_conf 87464102367676678863069999803143012265665641367773011668766400110023210245788888
Q gi|254780451|r 345 AYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFH 424 (896)
Q Consensus 345 ~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (896)
+. ....+ -.+.++|+..++.- .... + .
T Consensus 258 ---------~~-~~~~d--~~e~i~i~~~d~~d-------------------a~~~-l---------------------~ 284 (403)
T COG1679 258 ---------RA-LAFGD--KAEKIEIEREDIDD-------------------AWER-L---------------------N 284 (403)
T ss_pred ---------CC-CCCCC--CCCEEEEEHHHHHH-------------------HHHH-H---------------------H
T ss_conf ---------54-45356--67524630777899-------------------9998-6---------------------1
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCC
Q ss_conf 75554457531046765459998778899988986498758673079701618999999985885777750530205532
Q gi|254780451|r 425 LKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 (896)
Q Consensus 425 l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GC 504 (896)
..++.+.+.+|| |---|..+++--|.++ +|++.++.+.+. +--|++|...+.+.|+++.|+++|..++ |
T Consensus 285 ~~~~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~-V~~sr~v~~~a~~~G~~~~le~~g~~vv---~ 353 (403)
T COG1679 285 TADGEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLY-VTTSRAVYAQARKEGYLAKLEELGVKVV---S 353 (403)
T ss_pred CCCCCCCEEEEC-CCCCCHHHHHHHHHHH------HCCCCCCCCCEE-EECCHHHHHHHHHHHHHHHHHHCCCEEE---C
T ss_conf 578888879957-9998889999999997------415778898789-9807999988764206889997099890---4
Q ss_pred CCCC
Q ss_conf 2421
Q gi|254780451|r 505 TTCI 508 (896)
Q Consensus 505 g~Ci 508 (896)
.+|.
T Consensus 354 DtC~ 357 (403)
T COG1679 354 DTCM 357 (403)
T ss_pred CCEE
T ss_conf 7314
No 56
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=92.04 E-value=0.43 Score=27.07 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=18.9
Q ss_pred CCHHHHHHHCC-CCCEEEEEECCCCCCHHHHCC
Q ss_conf 64789888505-355232233178989888198
Q gi|254780451|r 802 ESFERIHRSNL-IGMGVIPFAFGKGISWKNLNI 833 (896)
Q Consensus 802 ~SFeRIHrsNL-v~mGiLPL~F~~~~~~~~L~l 833 (896)
+.|+..+.-|| |+|-=-|.-|.+ |..-++-
T Consensus 470 ~~~~~~g~d~lPiCmAKTqYS~Sd--dp~llg~ 500 (554)
T COG2759 470 KTFEKQGFDNLPICMAKTQYSFSD--DPSLLGA 500 (554)
T ss_pred HHHHHHCCCCCCEEEECCCCCCCC--CHHHCCC
T ss_conf 999981888775367637566568--9766399
No 57
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=87.25 E-value=0.87 Score=24.83 Aligned_cols=71 Identities=23% Similarity=0.228 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHH-CCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHH
Q ss_conf 999989981998899946777867307999886676-17089997647898885053552322331789898881
Q gi|254780451|r 758 DAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRL-LGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNL 831 (896)
Q Consensus 758 daA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~l-LGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L 831 (896)
+.-++.++.+.|+.. +|+-.|+||||--|.-.-++ .|-..--.--| | ---=.++-+|-|+-|.--+|.-.|
T Consensus 41 ~~i~~lk~~g~~~~~-vgdvvGtGSSRkSa~Nsv~w~~G~~ip~vpnk-~-~ggv~~g~~IaPIFfnT~edsGal 112 (131)
T cd01576 41 VAIAQLKPKGHPVAY-VGDVVGTGSSRKSATNSVLWHTGKDIPFVPNK-R-AGGVVLGGKIAPIFFNTAEDSGAL 112 (131)
T ss_pred HHHHHHHHCCCEEEE-EECCEECCCCCHHHHHHHHHHHCCCCCCCCCC-C-CCEEEECCCCCCEEEECCCCCCCE
T ss_conf 999999664983899-81657668362544416199708878888986-6-776886881753577211225760
No 58
>PRK01550 truB tRNA pseudouridine synthase B; Provisional
Probab=83.67 E-value=2.1 Score=22.02 Aligned_cols=109 Identities=16% Similarity=0.302 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12777688302210113663587863367666654685433100059789999985161222310023554888863200
Q gi|254780451|r 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYL 587 (896)
Q Consensus 508 iGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L 587 (896)
+|++|-|+|-.+ ++...++-...| |-.-+....|. | .+++.+...||. .|.+|+-+.-
T Consensus 31 vGH~GTLDP~At------GvL~i~iG~aTK-l~~~l~~~~K~-Y------------~a~~~lG~~TdT--~D~~G~vi~~ 88 (307)
T PRK01550 31 IGHTGTLDPDVT------GVLPICVGRATK-IAQFLTSETKT-Y------------EGEVTLGFSTTT--EDASGEVVET 88 (307)
T ss_pred CCCCCCCCCCCE------EEEEEEECCCHH-HCHHHCCCCCE-E------------EEEEEEEEECCC--CCCCCCEEEE
T ss_conf 464746798662------169999780000-13444667834-8------------999999764687--6778776640
Q ss_pred CCCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1568--88578888876415832100012233478712201557877620567433342378
Q gi|254780451|r 588 RDIW--PKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP 647 (896)
Q Consensus 588 ~Diw--Ps~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~p 647 (896)
++++ ++.++|++++.+.... +.+-++.+-++.+..-.+|.+.-+-..|.+|
T Consensus 89 ~~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySA~Kv~GkrlY~lAR~G~~ve~~ 141 (307)
T PRK01550 89 KHVDRVITRKEVEEVLAELTGT---------IEQMPPMFSAVKVNGKKLYEYARAGQEVERP 141 (307)
T ss_pred CCCCCCCCHHHHHHHHHHCCCC---------EEECCCHHHHHHHCCHHHHHHHHCCCCCCCC
T ss_conf 4788899999999999967873---------6351888997543347699998778823468
No 59
>PRK01528 truB tRNA pseudouridine synthase B; Provisional
Probab=81.51 E-value=2.5 Score=21.55 Aligned_cols=127 Identities=17% Similarity=0.209 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEC
Q ss_conf 16189999999858857777505302055322421277768830221011366358786336766665468543310005
Q gi|254780451|r 474 PGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLL 553 (896)
Q Consensus 474 PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLa 553 (896)
+-|..|...+.+. | | .-=+|++|-|+|-.+ ++..+++-...| +-.-+....|. |
T Consensus 14 ~TS~~vv~~vkk~-----~---~--------~~KvGH~GTLDP~At------GvL~i~~g~aTK-~~~~~~~~~K~-Y-- 67 (293)
T PRK01528 14 ISSAKLVSIVKKI-----L---G--------KVKIGHAGTLDVEAE------GILPLAVGEATK-LIQLLIDAKKT-Y-- 67 (293)
T ss_pred CCHHHHHHHHHHH-----H---C--------CCCCCCCCCCCCCCC------CEEEEEECHHHH-HHHHHCCCCEE-E--
T ss_conf 9989999999998-----4---8--------980576867887570------158999786650-33786579806-9--
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 97899999851612223100235548888632001568885788888764158321000122334787122015578776
Q gi|254780451|r 554 SPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633 (896)
Q Consensus 554 SP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~ 633 (896)
-+++.+...||. .|.+|+-+.-.+.-|+.+|+.+++.+.+.. +.+-++..-++.+..-.
T Consensus 68 ----------~~~~~~G~~TdT--~D~eG~ii~~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySAvKv~Gkr 126 (293)
T PRK01528 68 ----------IFTVKFGKQTDS--GDYAGKVIATKDYIPSQEEAYAVCSKFIGN---------VTQIPPAFSALKVNGVR 126 (293)
T ss_pred ----------EEEEEECCCCCC--CCCCCCEEECCCCCCCHHHHHHHHHHCCCC---------EEEECCHHHHHCCCCHH
T ss_conf ----------999997884798--886775874157899999999999857782---------79908889962006760
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 20567433342378
Q gi|254780451|r 634 TYMWDEKSTYVRNP 647 (896)
Q Consensus 634 ~y~w~~~StyI~~p 647 (896)
.|++.-+-..+..+
T Consensus 127 aY~lAR~G~~vel~ 140 (293)
T PRK01528 127 AYKLAREGKEVELK 140 (293)
T ss_pred HHHHHHCCCEEECC
T ss_conf 99998669724427
No 60
>PRK00989 truB tRNA pseudouridine synthase B; Provisional
Probab=80.04 E-value=3.2 Score=20.69 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCC---CCCCCCCCE
Q ss_conf 16189999999858857777505302055322421277768830221011366358786336766665---468543310
Q gi|254780451|r 474 PGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEG---RISPDVEAN 550 (896)
Q Consensus 474 PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeG---R~~p~~~~~ 550 (896)
+-|..|...+.+. | |.. =+|++|-|+|-.+ ++..+++ ||++.- -.....|.
T Consensus 20 ~TS~~vv~~vkk~-----l---~~k--------KvGH~GTLDP~At------GvLiv~i---G~~~Tkl~~~~~~~~K~- 73 (235)
T PRK00989 20 RTSFSLIRALTKL-----I---GVK--------KIGHAGTLDPFAT------GVMVMLI---GRKFTRLSDILLFEDKE- 73 (235)
T ss_pred CCHHHHHHHHHHH-----H---CCC--------CCCCCCCCCCCCC------CEEEEEC---CCCCCCHHHHHCCCCCE-
T ss_conf 9989999999998-----5---877--------4687867797443------5288840---74511278986757846-
Q ss_pred EECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 00597899999851612223100235548888632001568885788888764158321000122334787122015578
Q gi|254780451|r 551 YLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVP 630 (896)
Q Consensus 551 yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~ 630 (896)
|. +++.+...||. .|.+|+-+.-.+.-|+.+||.+.+.++... +.+-++..-++.+.
T Consensus 74 Y~------------a~i~lG~~TdT--~D~eG~i~~~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySAiKv~ 130 (235)
T PRK00989 74 YA------------AIAHLGTTTDS--YDCDGKVVGRSKKIPTLEEVLEAASYFQGE---------IQQVPPMFSAKKVQ 130 (235)
T ss_pred EE------------EEEEECCCCCC--CCCCCCEEEECCCCCCHHHHHHHHHHHCCC---------EEECCCCCEEEEEC
T ss_conf 99------------99998984777--666785532148899999999999973387---------31418862058884
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 77620567433342
Q gi|254780451|r 631 ESETYMWDEKSTYV 644 (896)
Q Consensus 631 ~~~~y~w~~~StyI 644 (896)
.-..|.|.-+-..+
T Consensus 131 Gkr~Y~lAR~g~~v 144 (235)
T PRK00989 131 GKKLYEYARQGLSI 144 (235)
T ss_pred CCCHHHHHHCCCEE
T ss_conf 70689998678601
No 61
>PRK05389 truB tRNA pseudouridine synthase B; Provisional
Probab=79.88 E-value=3 Score=20.91 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEC
Q ss_conf 16189999999858857777505302055322421277768830221011366358786336766665468543310005
Q gi|254780451|r 474 PGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLL 553 (896)
Q Consensus 474 PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLa 553 (896)
+-|..|...+.+. | |. -=+|++|-|+|-.. ++..+++-...|= -.-+....|. |.
T Consensus 24 ~TS~~vv~~vkk~-----~---~~--------kKvGH~GTLDP~At------GvL~i~~G~aTk~-~~~~~~~~K~-Y~- 78 (305)
T PRK05389 24 MTSTEAVSKVKWL-----F---DA--------QKAGHAGTLDPLAS------GVLPIALGEATKT-VPYVMDGTKR-YR- 78 (305)
T ss_pred CCHHHHHHHHHHH-----H---CC--------CCCCCCCCCCCCCC------CEEEEEECHHHHH-HHHHCCCCEE-EE-
T ss_conf 9989999999998-----5---88--------85677867798660------2388998877623-3676568807-99-
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 97899999851612223100235548888632001568885788888764158321000122334787122015578776
Q gi|254780451|r 554 SPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633 (896)
Q Consensus 554 SP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~ 633 (896)
+++.+...||. .|.+|+-+.-.+.-|+.++|.+.+.+.... +.+-++.+-++.+..-.
T Consensus 79 -----------~~~~lG~~TdT--~D~~G~v~~~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySAiKv~Gkr 136 (305)
T PRK05389 79 -----------FTVAWGEERDT--DDLEGEVTATSDKRPTDEEIRALLPAFTGV---------IMQVPPQFSAIKIDGER 136 (305)
T ss_pred -----------EEEEECCCCCC--CCCCCCEEEECCCCCCHHHHHHHHHHCCCC---------EEECCCHHHHHHHCCHH
T ss_conf -----------99998431335--666885456258997599999999968761---------78728878964436801
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 205674333423788
Q gi|254780451|r 634 TYMWDEKSTYVRNPP 648 (896)
Q Consensus 634 ~y~w~~~StyI~~pP 648 (896)
.|+|.-+-..+..+|
T Consensus 137 ~Y~lAR~G~~ve~~~ 151 (305)
T PRK05389 137 AYDLAREGETVELPP 151 (305)
T ss_pred HHHHHHCCCCCCCCC
T ss_conf 999987798213563
No 62
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=79.03 E-value=4.2 Score=19.87 Aligned_cols=72 Identities=32% Similarity=0.218 Sum_probs=43.8
Q ss_pred CCEEEEECC--CHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCC--CEEEEEEECCCCCCCCC
Q ss_conf 730797016--18999999985885777750530205532242127776883022101136--63587863367666654
Q gi|254780451|r 467 WVKTSCAPG--SQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQK--SLVVAGVLSGNRNFEGR 542 (896)
Q Consensus 467 ~Vkt~l~PG--S~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~--~l~~~sV~SgNRNFeGR 542 (896)
.+...+.|| |-.+...+++.|+++.|.+.=.. .-|--|||-|+- -|..++.+..... ++.-+.| +||.=||
T Consensus 38 ~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~-G~Pv~GTCAGlI-lLakei~~~~~~~~Lg~mdi~V---~RNAfGR 112 (194)
T COG0311 38 GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIAD-GLPVFGTCAGLI-LLAKEILDGPEQPLLGLLDVTV---RRNAFGR 112 (194)
T ss_pred CCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHC-CCCEEEECHHHH-HHHHHHCCCCCCCCCCEEEEEE---ECCCCCC
T ss_conf 3767895495078999999873848999999976-996477514256-5346550898775212278999---8136554
Q ss_pred C
Q ss_conf 6
Q gi|254780451|r 543 I 543 (896)
Q Consensus 543 ~ 543 (896)
+
T Consensus 113 Q 113 (194)
T COG0311 113 Q 113 (194)
T ss_pred C
T ss_conf 3
No 63
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=78.71 E-value=1.8 Score=22.50 Aligned_cols=111 Identities=26% Similarity=0.318 Sum_probs=61.8
Q ss_pred EEECCCCCCCCCCCHHHHCCCCHHHHHHHHC------CCCCEECCCCEEEEEEE-----CCCCCCC---CHHHHHHHH--
Q ss_conf 3206887644452012320343489999970------77514116728999997-----6778644---368899999--
Q gi|254780451|r 211 CVGTDSHTTMINALGILGWGVGGIEAEAAML------GCPISMLLPEVVGFEVT-----GSLQEGV---TATDLVLTI-- 274 (896)
Q Consensus 211 lVGtDSHT~~~galG~la~GVGg~eaea~ml------Gqp~~~~vPevigv~L~-----G~L~~gV---takDiiL~i-- 274 (896)
+|.+=|=.||.||| |.+.+.- -..+.+-.|||+-=-|= =+||.-+ ++=|+.||=
T Consensus 111 iVAAI~GsClGGGL----------ElAlaChYRIAtkD~KT~LglPEVlLGlLPGaGgTqRLPKl~~vp~aLDm~LTGk~ 180 (740)
T TIGR02441 111 IVAAISGSCLGGGL----------ELALACHYRIATKDRKTLLGLPEVLLGLLPGAGGTQRLPKLTGVPAALDMMLTGKK 180 (740)
T ss_pred EEEEECCCCCCHHH----------HHHHHCCCCEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 58752263104168----------99875044112236545346506898248898644236401000235513325873
Q ss_pred --HHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHC---------------CCCH
Q ss_conf --99841022121279996155001787563212000100372037751998999999863---------------9998
Q gi|254780451|r 275 --TQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLS---------------GRSN 337 (896)
Q Consensus 275 --~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~t---------------GR~~ 337 (896)
.-+-++-|.|.+.|+=-|||+ =|+.+.|++||+.+ .|+.
T Consensus 181 i~ADrAKk~GiVD~lv~PLGpGl------------------------~Pae~~TieYLEe~Av~~A~~LA~~kl~~~R~K 236 (740)
T TIGR02441 181 IRADRAKKLGIVDQLVDPLGPGL------------------------KPAEENTIEYLEEVAVKFAKGLANGKLSVNRDK 236 (740)
T ss_pred CCCCCCCCCCCEEEEECCCCCCC------------------------CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 01230011443002234687788------------------------875666799999999999988415863440050
Q ss_pred -HHHHHHHHHHHHHHCCCC
Q ss_conf -899999987464102367
Q gi|254780451|r 338 -SRVDLVEAYTKVQGMWRE 355 (896)
Q Consensus 338 -~~v~lve~Y~ka~~l~~~ 355 (896)
-.+..+..|.-...++++
T Consensus 237 sGlv~k~t~~vM~~~fv~~ 255 (740)
T TIGR02441 237 SGLVSKITSYVMTTPFVRQ 255 (740)
T ss_pred CHHHHHHHHHHHCCHHHHH
T ss_conf 1288999998611212322
No 64
>TIGR02846 spore_sigmaK RNA polymerase sigma-K factor; InterPro: IPR014209 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . The sporulation-specific transcription factor sigma-K (also called sigma-27) is expressed in the mother cell compartment of endospore-forming bacteria such as Bacillus subtilis. Like its close homologue sigma-E (sigma-29, see IPR014200 from INTERPRO), also specific to the mother cell compartment, it must be activated by a proteolytic cleavage. Note: that in Bacillus subtilis (and apparently also in Clostridium tetani), but not in other endospore forming species such as Bacillus anthracis, the sigK gene is generated by a non-germline (mother cell only) chromosomal rearrangement that recombines coding regions for the N-terminal and C-terminal regions of sigma-K .; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=77.51 E-value=0.92 Score=24.67 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCC
Q ss_conf 00235548888632001568885-78888876415832100
Q gi|254780451|r 572 IKDPIGEDQQGSPVYLRDIWPKD-SEIQSFVNKYVTCDLYK 611 (896)
Q Consensus 572 ~~dplg~~~~G~~v~L~DiwPs~-~Ei~~~~~~~v~~~~f~ 611 (896)
+.||+|.|+.|+.+-|-||.-|+ +.|.+.+...++-+...
T Consensus 129 L~DPIG~DKEGNEIsL~DiL~~~~d~v~e~v~~~~~~~~l~ 169 (228)
T TIGR02846 129 LQDPIGVDKEGNEISLIDILGSDEDSVIEQVEKKLEIKKLY 169 (228)
T ss_pred ECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 10788867676423000001688731688888644599999
No 65
>PRK02755 truB tRNA pseudouridine synthase B; Provisional
Probab=76.38 E-value=4.2 Score=19.83 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=61.7
Q ss_pred CCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12777688302210113663587863367666654685433100059789999985161222310023554888863200
Q gi|254780451|r 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYL 587 (896)
Q Consensus 508 iGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L 587 (896)
+|++|-|+|-.+ ++..+++-...|=. .||.++ -..-+++.+...||. .|.+|+-+.-
T Consensus 31 vGH~GTLDP~At------GvL~i~~G~aTk~~----------~~l~~~-----K~Y~~~~~lG~~TdT--~D~~G~i~~~ 87 (291)
T PRK02755 31 VGHGGTLDPAAT------GVLPIAVGKATRLL----------PYLPSG-----KAYKATVRFGLQTTT--DDLTGEILAS 87 (291)
T ss_pred CCCCCCCCCCCC------CEEEEEECHHHEEC----------CCCCCC-----CEEEEEEEECCCCCC--CCCCCCCEEE
T ss_conf 677857797550------52899976576643----------004899-----589999998974665--6667871133
Q ss_pred CCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1568-88578888876415832100012233478712201557877620567433342378
Q gi|254780451|r 588 RDIW-PKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP 647 (896)
Q Consensus 588 ~Diw-Ps~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~p 647 (896)
++.- ++.++|.+++.+++.. +.+-++..-++.+..-..|.+.-+-..|..|
T Consensus 88 ~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySAiKv~GkrlY~lAR~G~~ve~~ 139 (291)
T PRK02755 88 QPASHLSLAAVETALPQFLGK---------IEQIPPQYSAIQVEGKRLYDLARQGEAVEVP 139 (291)
T ss_pred CCCCCCCHHHHHHHHHHCCCC---------EEECCCHHHHHHCCCHHHHHHHHCCCCCCCC
T ss_conf 679989999999999973682---------6254897895101572099998669803367
No 66
>PRK05033 truB tRNA pseudouridine synthase B; Provisional
Probab=75.97 E-value=4.4 Score=19.74 Aligned_cols=127 Identities=12% Similarity=0.101 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEC
Q ss_conf 16189999999858857777505302055322421277768830221011366358786336766665468543310005
Q gi|254780451|r 474 PGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLL 553 (896)
Q Consensus 474 PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLa 553 (896)
+-|..|...+.+.- +. -=+|++|-|+|-.. ++..+++-...| |-.-.....|. |
T Consensus 23 ~TS~~~v~~~kk~~--------~~--------kKvGH~GTLDP~At------GvL~i~~G~aTK-~~~~~~~~~K~-Y-- 76 (314)
T PRK05033 23 MSSNDALQKVKRIY--------NA--------NKAGHTGALDPLAT------GMLPICLGEATK-FSQFLLDSDKR-Y-- 76 (314)
T ss_pred CCHHHHHHHHHHHH--------CC--------CCCCCCCCCCCCCC------CEEEEEECHHHH-HHHHHCCCCCE-E--
T ss_conf 99899999999985--------88--------85687857797560------218999888870-40886689917-9--
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 97899999851612223100235548888632001568885788888764158321000122334787122015578776
Q gi|254780451|r 554 SPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633 (896)
Q Consensus 554 SP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~ 633 (896)
-+++.+...||. .|.+|+-+.-.++-++.++|.+++.+++.. +.+-++.+-++.+..-.
T Consensus 77 ----------~~~~~lG~~TdT--~D~eG~i~~~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySA~Kv~Gkr 135 (314)
T PRK05033 77 ----------RVIAKLGQRTDT--SDADGQVVEERPVTFSAEQLAAALETFRGD---------IEQIPSMYSALKYQGKP 135 (314)
T ss_pred ----------EEEEEECCCCCC--CCCCCCEEECCCCCCCHHHHHHHHHHCCCC---------EEECCCHHHHEEECCHH
T ss_conf ----------999997886566--788887720368999999999999975584---------52458878954257860
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 20567433342378
Q gi|254780451|r 634 TYMWDEKSTYVRNP 647 (896)
Q Consensus 634 ~y~w~~~StyI~~p 647 (896)
.|.|.-+-..|.++
T Consensus 136 ~Y~lAR~G~~ve~~ 149 (314)
T PRK05033 136 LYEYARQGIEVPRE 149 (314)
T ss_pred HHHHHHCCCCEEEC
T ss_conf 99998779841420
No 67
>PRK00130 truB tRNA pseudouridine synthase B; Provisional
Probab=75.88 E-value=5 Score=19.27 Aligned_cols=127 Identities=12% Similarity=0.169 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEC
Q ss_conf 16189999999858857777505302055322421277768830221011366358786336766665468543310005
Q gi|254780451|r 474 PGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLL 553 (896)
Q Consensus 474 PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLa 553 (896)
+-|..|...+.+.= +. -=+|++|-|+|-.+ ++..+++-...| |-.-+....|. |.|
T Consensus 13 ~TS~~vv~~vkk~l--------~~--------kKvGH~GTLDP~At------GvL~v~~G~aTK-~~~~~~~~~K~-Y~a 68 (289)
T PRK00130 13 MTSFDVVRKIRKIA--------KI--------KKVGHTGTLDPLAS------GVLPVCLGKATK-IVDYIMEGKKV-YRV 68 (289)
T ss_pred CCHHHHHHHHHHHH--------CC--------CCCCCCCCCCCCCC------CEEEEEECHHHH-HHHHHCCCCEE-EEE
T ss_conf 99899999999984--------88--------85577846798560------428999787761-43676799907-999
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 97899999851612223100235548888632001568885788888764158321000122334787122015578776
Q gi|254780451|r 554 SPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633 (896)
Q Consensus 554 SP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~ 633 (896)
++.+...||. .|.+|+-+.-.+.-|+.++|.+++.+.... +.+-++..-++.+..-.
T Consensus 69 ------------~~~lG~~TdT--~D~~G~i~~~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~~SA~Kv~Gkr 125 (289)
T PRK00130 69 ------------ELKLGTTTDT--YDREGEVLEEKEVSITEDEVEEAINSFIGE---------IDQVPPMYSALKINGVR 125 (289)
T ss_pred ------------EEEECCCCCC--CCCCCCEEEECCCCCCHHHHHHHHHHCCCC---------EEECCCHHHHHHHCCHH
T ss_conf ------------9997875776--546797876458998999999999975682---------62528878962415986
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 20567433342378
Q gi|254780451|r 634 TYMWDEKSTYVRNP 647 (896)
Q Consensus 634 ~y~w~~~StyI~~p 647 (896)
.|.|.-+-..+.++
T Consensus 126 lY~lAR~G~~ve~~ 139 (289)
T PRK00130 126 LYELARKGIEVERE 139 (289)
T ss_pred HHHHHHCCCCCCCC
T ss_conf 99999758755668
No 68
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=74.63 E-value=4.7 Score=19.48 Aligned_cols=10 Identities=60% Similarity=0.640 Sum_probs=9.1
Q ss_pred CCCEEEEEEC
Q ss_conf 8981399868
Q gi|254780451|r 123 LVPVDLVIDH 132 (896)
Q Consensus 123 ~vp~dlviDH 132 (896)
.|||-||.||
T Consensus 87 ~VPVaLHLDH 96 (345)
T cd00946 87 GVPVVLHTDH 96 (345)
T ss_pred CCCEEEECCC
T ss_conf 9988997356
No 69
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=73.84 E-value=4 Score=20.02 Aligned_cols=67 Identities=24% Similarity=0.262 Sum_probs=40.4
Q ss_pred CEEEEECC--CHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 30797016--189999999858857777505302055322421277768830221011366358786336766665468
Q gi|254780451|r 468 VKTSCAPG--SQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRIS 544 (896)
Q Consensus 468 Vkt~l~PG--S~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~ 544 (896)
+.-.+.|| |-.....+.+.||.+.|.+.- -..|--|||-|+= -|.+. ++.+. +.-..| .||+=||+-
T Consensus 40 idgLIiPGGESTti~~ll~~~~L~~~l~~~~--~~~Pv~GTCAGlI-LLak~-~~~lg---~ldi~V---~RNayGrQ~ 108 (179)
T PRK13526 40 IDRLVIPGGESTTLLNLLNKHQIFDKLYNFC--SSKPVFGTCAGSI-ILSKG-EGYLN---LLDLEV---QRNAYGRQV 108 (179)
T ss_pred CCEEEECCCCHHHHHHHHHHCCCHHHHHHHH--HCCCEEEECCEEE-EEECC-CCCCC---CEEEEE---EECCCCCCC
T ss_conf 7758975997789999976755499999998--5899088612068-98269-87667---135899---825545743
No 70
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=72.81 E-value=5.1 Score=19.25 Aligned_cols=10 Identities=60% Similarity=0.610 Sum_probs=8.9
Q ss_pred CCCEEEEEEC
Q ss_conf 8981399868
Q gi|254780451|r 123 LVPVDLVIDH 132 (896)
Q Consensus 123 ~vp~dlviDH 132 (896)
.|||-||.||
T Consensus 85 ~VPVaLHlDH 94 (340)
T cd00453 85 GVPVILHTDH 94 (340)
T ss_pred CCCEEEECCC
T ss_conf 9988997677
No 71
>PRK01851 truB tRNA pseudouridine synthase B; Provisional
Probab=71.11 E-value=5.8 Score=18.80 Aligned_cols=124 Identities=13% Similarity=0.146 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEC
Q ss_conf 16189999999858857777505302055322421277768830221011366358786336766665468543310005
Q gi|254780451|r 474 PGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLL 553 (896)
Q Consensus 474 PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLa 553 (896)
+-|..|...+.+. | |. -=+|++|-|+|-.+ ++..+++-...| |-.-+....|. |.
T Consensus 28 ~TS~~vv~~vk~~-----~---~~--------kKvGH~GTLDP~At------GvL~v~~G~aTK-~~~~~~~~~K~-Y~- 82 (310)
T PRK01851 28 LSSNDALIRAKRL-----L---LA--------KKAGHTGTLDPLAS------GLLPLCFGEATK-FSQDLLEADKT-YE- 82 (310)
T ss_pred CCHHHHHHHHHHH-----H---CC--------CCCCCCCCCCCCCC------CEEEEEECHHHH-HHHHHCCCCCE-EE-
T ss_conf 9989999999998-----5---88--------84577867797340------406899788773-31775769808-99-
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 97899999851612223100235548888632001568885788888764158321000122334787122015578776
Q gi|254780451|r 554 SPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633 (896)
Q Consensus 554 SP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~ 633 (896)
+++.+...||. .|.+|+-+.-+++-|+.++|++++.++... +.+-++..-++.+..-.
T Consensus 83 -----------~~~~lG~~TdT--~D~~G~v~~~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySAiKv~Gkr 140 (310)
T PRK01851 83 -----------ATMRLGVRTTT--GDAEGEVLDTRPVSCDRAAVEAALARFVGE---------IVQVPPMYSALKRDGKP 140 (310)
T ss_pred -----------EEEEECCCCCC--CCCCCCEECCCCCCCCHHHHHHHHHHCCCC---------EEECCCHHHHEEECCHH
T ss_conf -----------99998986777--787787720367999999999999967751---------67659706834445887
Q ss_pred CCCCCCCCCCC
Q ss_conf 20567433342
Q gi|254780451|r 634 TYMWDEKSTYV 644 (896)
Q Consensus 634 ~y~w~~~StyI 644 (896)
.|++.-+-..+
T Consensus 141 lY~lAR~G~~v 151 (310)
T PRK01851 141 LYEYARAGQTV 151 (310)
T ss_pred HHHHHHCCCCE
T ss_conf 89998578860
No 72
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=67.41 E-value=8.4 Score=17.65 Aligned_cols=41 Identities=27% Similarity=0.250 Sum_probs=24.5
Q ss_pred CCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHC
Q ss_conf 8997873799999899819988999467778673079998866761
Q gi|254780451|r 749 PSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794 (896)
Q Consensus 749 p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lL 794 (896)
|+-....|.+.++.|++.+-..|| | .|-||+-| |||+-+++
T Consensus 521 pdPt~~~V~~G~~~~~~~~~D~II-a---lGGGS~iD-aAKai~~~ 561 (862)
T PRK13805 521 PDPTLSTVRKGAELMRSFKPDTII-A---LGGGSPMD-AAKIMWLF 561 (862)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEE-E---ECCCCHHH-HHHHHHHH
T ss_conf 993979999999999864999999-9---47834889-99999999
No 73
>TIGR01824 PabB-clade2 para-aminobenzoate synthase component I; InterPro: IPR010118 This clade of sequences is more closely related to TrpE (anthranilate synthase, IPR005256 from INTERPRO, IPR010116 from INTERPRO, IPR005257 from INTERPRO) than to the better characterised group of PabB enzymes (IPR005802 from INTERPRO, IPR010117 from INTERPRO). This clade includes one characterised enzyme from Lactococcus and the conserved function across the clade is supported by these pieces of evidence: 1) all genomes with a member in this clade also have a separate TrpE gene, 2) none of these genomes contain an apparent PabB from any of the other PabB clades, 3) none of these sequences are found in a region of the genome in association with other Trp biosynthesis genes, 4) all of these genomes apparently contain most if not all of the steps of the folate biosynthetic pathway (for which PABA is a precursor). Many of the sequences are annotated as TrpE enzymes, however, we believe that all members of this clade are, in fact, PabB. The sequences from Bacillus halodurans and B.subtilus, are also likely to be PabB enzymes, but are too closely related to TrpE to be separated at this time..
Probab=66.69 E-value=2.2 Score=21.94 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=18.5
Q ss_pred CCCCCEEEEEECCCCCHHHCCCCCCCCCCC
Q ss_conf 435855899965885723316456555447
Q gi|254780451|r 662 DICGARILCLLGDKITTDHISPAGSIPLQS 691 (896)
Q Consensus 662 ~i~~arvL~~lGD~iTTDHISPAG~I~~~s 691 (896)
-|+ -+|-..|-+.++--|+--|. +|..|
T Consensus 259 HLV-S~V~G~L~~~~~~~dl~~A~-FPgGs 286 (373)
T TIGR01824 259 HLV-SRVTGRLREGLTLADLIAAL-FPGGS 286 (373)
T ss_pred EEE-EEEEEECCCCCCHHHHHHHC-CCCCC
T ss_conf 888-76678427777888999642-87874
No 74
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=66.55 E-value=7.2 Score=18.13 Aligned_cols=80 Identities=25% Similarity=0.248 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHCC----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 19999998874048----66579999999861235545777663645325220000035799999999999997199999
Q gi|254780451|r 43 SMKVLLENLLRFED----GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQ 118 (896)
Q Consensus 43 s~rillEn~~R~~~----~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~ 118 (896)
++|=||.-+..+.- =....-+.+++++.=-+..+.+ .=|.+.| -..+.++|...++ +|..+++ .
T Consensus 5 ~~k~ll~~A~~~~yAV~AfNv~n~e~~~Avi~AAee~~sP-vIlq~s~--~~~~~~~g~~~~~---~~~~~~~------~ 72 (285)
T PRK07709 5 SMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSP-VILGVSE--GAARHMTGFKTVV---AMVKALI------E 72 (285)
T ss_pred CHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCC-EEEECCC--CHHHHCCCHHHHH---HHHHHHH------H
T ss_conf 6899999999889079997889999999999999997889-9999374--5887656778999---9999999------9
Q ss_pred HCCCCCCEEEEEECCC
Q ss_conf 9287898139986832
Q gi|254780451|r 119 NINPLVPVDLVIDHSL 134 (896)
Q Consensus 119 ~inp~vp~dlviDHsv 134 (896)
..++.|||-||.||.-
T Consensus 73 ~~~~~VPV~lHLDH~~ 88 (285)
T PRK07709 73 EMNITVPVAIHLDHGS 88 (285)
T ss_pred HHCCCCCEEEECCCCC
T ss_conf 8389998898899999
No 75
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=65.40 E-value=3.9 Score=20.09 Aligned_cols=41 Identities=39% Similarity=0.736 Sum_probs=25.8
Q ss_pred CCCCCCCCHHHHHCC--CCCEEEEE-EECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC
Q ss_conf 277768830221011--36635878-633676666546854331000597899999851612
Q gi|254780451|r 509 GNSGALKKEISEVIH--QKSLVVAG-VLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 (896)
Q Consensus 509 GnsG~l~~~i~~~i~--~~~l~~~s-V~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I 567 (896)
|.+|.+++++-.-+. .|.-.+-+ +-||||||-. +||+||++
T Consensus 54 ~~~~~Vp~~vi~FLn~~~Nr~~~rGViaSGN~NfG~------------------~f~~Ag~~ 97 (141)
T COG1780 54 GTVGAVPKQVIRFLNNEHNRALCRGVIASGNRNFGD------------------NFALAGDV 97 (141)
T ss_pred CCCCCCCHHHHHHHCCCCCHHHEEEEEECCCCCHHH------------------HHHHHHHH
T ss_conf 756726788999863642554467788527762778------------------88887899
No 76
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=65.36 E-value=6.8 Score=18.34 Aligned_cols=43 Identities=37% Similarity=0.661 Sum_probs=28.6
Q ss_pred HCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCEEEE-CCCCCCHH
Q ss_conf 00599889998-99988754267899998774214880786-08876216
Q gi|254780451|r 137 DYSGNKDAVTR-NKDLEYQRNEERYRFLKWGQKSFKNFRVV-PPGTGICH 184 (896)
Q Consensus 137 d~~g~~~a~~~-n~~~e~~rN~Ery~Flkwa~~~f~~~~v~-pPG~GI~H 184 (896)
|.-|..+|-++ .+-+||-+|-|||. +||-+ |+-|. |||+|=-|
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg--~WAPk---nVLFyGppGTGKTm 166 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFG--DWAPK---NVLFYGPPGTGKTM 166 (368)
T ss_pred HHHCHHHHHHHHHHHHHHHHCHHHHC--CCCCC---EEEEECCCCCCHHH
T ss_conf 64163988888799999964968763--45754---16877899964879
No 77
>pfam01174 SNO SNO glutamine amidotransferase family. This family and its amidotransferase domain was first described in. It is predicted that members of this family are involved in the pyridoxine biosynthetic pathway, based on the proximity and co-regulation of the corresponding genes and physical interaction between the members of pfam01174 and pfam01680.
Probab=65.29 E-value=8.9 Score=17.48 Aligned_cols=41 Identities=22% Similarity=0.108 Sum_probs=29.7
Q ss_pred EEEECC--CHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCC
Q ss_conf 797016--18999999985885777750530205532242127
Q gi|254780451|r 470 TSCAPG--SQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGN 510 (896)
Q Consensus 470 t~l~PG--S~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGn 510 (896)
.++-|| |......+++.|+.+.|.+.=..---|==|.|+||
T Consensus 36 ~LILPGg~s~~~~~ll~~~gl~~~l~e~i~~~~kPiLGIClGM 78 (188)
T pfam01174 36 ALIIPGGESTAMSLLAKRYGFYEPLYEFVHNPNKPIWGTCAGL 78 (188)
T ss_pred EEEECCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEHHHHH
T ss_conf 8998898879999999986888999999980799663331446
No 78
>PRK02484 truB tRNA pseudouridine synthase B; Provisional
Probab=63.58 E-value=9.8 Score=17.15 Aligned_cols=110 Identities=16% Similarity=0.254 Sum_probs=58.9
Q ss_pred CCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21277768830221011366358786336766665468543310005978999998516122231002355488886320
Q gi|254780451|r 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVY 586 (896)
Q Consensus 507 CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~ 586 (896)
=+|++|-|+|-.+ ++..+++-...|=.+= +....|. | .+++.+...||. .|.+|+-+.
T Consensus 31 KvGH~GTLDP~At------GvL~v~~G~aTkl~~~-~~~~~K~-Y------------~~~~~lG~~TdT--~D~~G~ii~ 88 (293)
T PRK02484 31 KIGHGGTLDPDVV------GVLPIAVGKATRVIEY-MTEAGKV-Y------------EGEVTLGYSTTT--EDASGEVVA 88 (293)
T ss_pred CCCCCCCCCCCCE------EEEEEEECHHHHHHHH-HCCCCCE-E------------EEEEEECCCCCC--CCCCCCEEE
T ss_conf 5565836798661------2689997887715187-6648938-9------------999994332566--678886676
Q ss_pred CCCCCC--CHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 015688--8578888876415832100012233478712201557877620567433342378
Q gi|254780451|r 587 LRDIWP--KDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP 647 (896)
Q Consensus 587 L~DiwP--s~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~p 647 (896)
-.++.+ +.++|++.+.+.... +.+-++..-++.+..-..|+|.-+-..+..|
T Consensus 89 ~~~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySAiKv~Gkr~Y~lAR~g~~ve~~ 142 (293)
T PRK02484 89 RTPVPAVLTEELVDQAMTSFTGK---------ITQIPPMYSAVKVNGRKLYEYARAGEEVERP 142 (293)
T ss_pred ECCCCCCCCHHHHHHHHHHCCCC---------EEECCCHHHHHHHCCHHHHHHHHCCCCCCCC
T ss_conf 34777899999999999868740---------6765976896221556799998779703468
No 79
>TIGR01245 trpD anthranilate phosphoribosyltransferase; InterPro: IPR005940 In many widely different species, including Escherichia coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzyme is a C-terminal part of a multifunctional protein together with glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (4.1.3.27 from EC).; GO: 0004048 anthranilate phosphoribosyltransferase activity, 0000162 tryptophan biosynthetic process.
Probab=63.41 E-value=5.4 Score=19.03 Aligned_cols=31 Identities=32% Similarity=0.421 Sum_probs=17.6
Q ss_pred HCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEE
Q ss_conf 64987586730797016189999999858857777505302
Q gi|254780451|r 459 RAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSL 499 (896)
Q Consensus 459 ~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i 499 (896)
..|.||+.+= .|.| =-++|=-+.||++|.++
T Consensus 97 aaGvkvAKHG-------NRSv---SS~SGSADvLEaLGvnl 127 (331)
T TIGR01245 97 AAGVKVAKHG-------NRSV---SSKSGSADVLEALGVNL 127 (331)
T ss_pred HCCCCEEEEC-------CCCE---ECCCCHHHHHHHCCCCC
T ss_conf 5678737664-------8102---43541257899728834
No 80
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II; InterPro: IPR006411 Members of this family are class II examples of the glycolytic enzyme fructose-bisphosphate aldolase (FBA). They represent one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterised proteins. This family is well-conserved and includes characterised FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis.
Probab=62.52 E-value=5.1 Score=19.21 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=8.8
Q ss_pred CEEEEEE-EEEECCC
Q ss_conf 6179830-1320688
Q gi|254780451|r 203 ENIAYPD-TCVGTDS 216 (896)
Q Consensus 203 ~~~a~Pd-tlVGtDS 216 (896)
++||+|= -++||+|
T Consensus 28 ~~FAiPAiNctss~t 42 (365)
T TIGR01520 28 NSFAIPAINCTSSST 42 (365)
T ss_pred HCCCCCEEEECCCHH
T ss_conf 187565021025036
No 81
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit; InterPro: IPR006317 These sequences represent the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulphur subunit as found in ubiquinol-cytochrome c reductase. Not included in this group are the Rieske iron-sulphur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006118 electron transport.
Probab=61.55 E-value=9 Score=17.43 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=14.3
Q ss_pred CCCCCCC-EEEEEECCCCCCHH
Q ss_conf 6788630-69999803143012
Q gi|254780451|r 359 YEKVAFT-KKMKLDLGNVSPSV 379 (896)
Q Consensus 359 d~~a~Y~-~vieiDLs~ieP~V 379 (896)
++++.-. --+|+|+|+|+|--
T Consensus 33 sA~~~AaGA~~eVDvs~~~~Gq 54 (192)
T TIGR01416 33 SASALAAGAPTEVDVSKIQEGQ 54 (192)
T ss_pred CHHHHHCCCCEEEECCCCCCCC
T ss_conf 8699857885488625779886
No 82
>pfam02379 consensus
Probab=61.26 E-value=11 Score=16.88 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=23.6
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7531046765459998778899988986498758
Q gi|254780451|r 432 IASITSCTNTFNPSVMIGAGLLARNAVRAGLKSK 465 (896)
Q Consensus 432 IAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~ 465 (896)
|.+||||.++= -.-.+||..|.+.|.++|..++
T Consensus 2 ivaVTACptGI-AHTymAAeaLe~aa~~~G~~ik 34 (103)
T pfam02379 2 IVAVTACPTGI-AHTYMAAEALEKAAKKLGWEVK 34 (103)
T ss_pred EEEEECCCCCH-HHHHHHHHHHHHHHHHCCCEEE
T ss_conf 89995598608-7999999999999998799599
No 83
>TIGR01694 MTAP methylthioadenosine phosphorylase; InterPro: IPR010044 This entry represents the methylthioadenosine phosphorylase found in metazoa, cyanobacteria and a limited number of archaea such as Sulfolobus, Aeropyrum, Pyrobaculum, Pyrococcus, and Thermoplasma. This enzyme is responsible for the first step in the methionine salvage pathway after the transfer of the amino acid moiety from S-adenosylmethionine. The enzyme from human is well-characterised and its crystal structure has been described , . A misleading characterisation is found for a Sulfolobus solfataricus enzyme which is called a MTAP. In fact, as uncovered by the genome sequence of S. solfataricus, there are at least two nucleotide phosphorylases and the one found in the MTAP clade is not the one annotated as such. The sequence in this clade has not been isolated but is likely to be the authentic SsMTAP as it displays all of the conserved active site residues found in the human enzyme . This explains the finding that the characterised enzyme has greater efficiency towards the purines inosine, guanosine and adenosine over MTA. In fact, this misnaming of this enzyme has been carried forward to several publications including a crystal structure . Related sequences include: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilise the MTA/SAH nucleotidase enzyme and a kinase to do this reaction; and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbour-joining trees) and lacks some of the conserved active site residues. ; GO: 0016763 transferase activity transferring pentosyl groups.
Probab=59.99 E-value=5.4 Score=19.03 Aligned_cols=13 Identities=23% Similarity=0.146 Sum_probs=5.1
Q ss_pred EECCHHHHHHHHC
Q ss_conf 7389999999990
Q gi|254780451|r 872 CIDTLDEINHLKN 884 (896)
Q Consensus 872 r~dt~~E~~~~~~ 884 (896)
|+.|..|+.+|+.
T Consensus 181 RFsT~AEs~~~~~ 193 (263)
T TIGR01694 181 RFSTRAESRLFKS 193 (263)
T ss_pred CCCHHHHHHHHHH
T ss_conf 7673899999998
No 84
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=59.91 E-value=6.5 Score=18.44 Aligned_cols=44 Identities=34% Similarity=0.595 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHC
Q ss_conf 889998999887542678999987742148807860887621677898633
Q gi|254780451|r 142 KDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLG 192 (896)
Q Consensus 142 ~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la 192 (896)
.+-|.+|..+. +||++||+ +|++-++ || ..-||+| -.+.||.+.
T Consensus 12 ~diL~~N~rlA-~~Nr~~~~--~~g~~~l-Nf-msspGSG--KT~LiEk~~ 55 (225)
T TIGR00073 12 EDILSKNDRLA-EKNRERFD--KEGLLVL-NF-MSSPGSG--KTTLIEKLI 55 (225)
T ss_pred HHHHHHHHHHH-HHHHHHHH--HCCCEEE-EE-CCCCCCC--HHHHHHHHH
T ss_conf 50789888999-99999998--6597899-80-2588611--589999999
No 85
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=59.20 E-value=12 Score=16.62 Aligned_cols=15 Identities=33% Similarity=0.259 Sum_probs=11.8
Q ss_pred HHHCCCHHHHHHHHH
Q ss_conf 544571199999988
Q gi|254780451|r 37 ISRLPCSMKVLLENL 51 (896)
Q Consensus 37 ~~~lP~s~rillEn~ 51 (896)
-+-|||-.|-||||-
T Consensus 548 ~dLLaYLVRRLLENG 562 (1319)
T PRK11809 548 ETLLAYLVRRLLENG 562 (1319)
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 003999999998758
No 86
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=58.95 E-value=12 Score=16.59 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=13.6
Q ss_pred ECCCH---HHHHHHHHCCCHH-HHHH
Q ss_conf 01618---9999999858857-7775
Q gi|254780451|r 473 APGSQ---VSYEYLVQAGLVE-YLEA 494 (896)
Q Consensus 473 ~PGS~---~V~~~L~~~Gll~-~L~~ 494 (896)
.|||+ .|++.|...|++. ||+.
T Consensus 138 ~ags~~a~evka~li~~glwsqylev 163 (379)
T COG3970 138 EAGSDYAAEVKAKLIAKGLWSQYLEV 163 (379)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57875689999999862178877544
No 87
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; InterPro: IPR006276 This group represents cobalamin-independent methionine synthase. A family of uncharacterised archaeal proteins having substantial homology to the C-terminal region of this family, are not included in this group, though they are contained in a larger family of vitamin-B12 independent methionine synthase.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process.
Probab=58.88 E-value=2.2 Score=21.86 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=14.0
Q ss_pred HHHHHCCCHHHHHHHC-C--EECCCCCCCC
Q ss_conf 9999858857777505-3--0205532242
Q gi|254780451|r 481 EYLVQAGLVEYLEALG-F--SLVGFGCTTC 507 (896)
Q Consensus 481 ~~L~~~Gll~~L~~aG-f--~i~~~GCg~C 507 (896)
++.+...+++.|.+.. . -++++.|+.-
T Consensus 318 DL~a~l~~~~~l~~~~~~~~l~~~~SCSLL 347 (778)
T TIGR01371 318 DLEASLALLKKLLAHLGKDRLVVSTSCSLL 347 (778)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 899999999999986408868982687510
No 88
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=58.07 E-value=12 Score=16.49 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHCC----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 119999998874048----6657999999986123554577766364532522000003579999999999999719999
Q gi|254780451|r 42 CSMKVLLENLLRFED----GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDP 117 (896)
Q Consensus 42 ~s~rillEn~~R~~~----~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp 117 (896)
.++|-||..+..+-= =...+-+.+++++.=-+...++ .=|.+.|.- ..+.|...+. .|-.++++
T Consensus 4 v~~k~lL~~A~~~~YAV~AfNv~n~e~~~Avl~AAee~~sP-vIiq~s~g~---~~~~g~~~l~---~~v~~~a~----- 71 (347)
T PRK13399 4 ITLRQLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSP-VILQASRGA---RKYAGDAMLR---HMVLAAAE----- 71 (347)
T ss_pred CCHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCC-EEEECCCCH---HHHCCHHHHH---HHHHHHHH-----
T ss_conf 32999999999889079987779899999999999997879-899848138---8775989999---99999998-----
Q ss_pred HHCCCCCCEEEEEECC
Q ss_conf 9928789813998683
Q gi|254780451|r 118 QNINPLVPVDLVIDHS 133 (896)
Q Consensus 118 ~~inp~vp~dlviDHs 133 (896)
-.+.|||-||.||.
T Consensus 72 --~~~~VPValHLDHg 85 (347)
T PRK13399 72 --MYPDIPICLHQDHG 85 (347)
T ss_pred --HCCCCCEEEECCCC
T ss_conf --67899689855888
No 89
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=57.23 E-value=13 Score=16.39 Aligned_cols=109 Identities=11% Similarity=0.174 Sum_probs=61.8
Q ss_pred CCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12777688302210113663587863367666654685433100059789999985161222310023554888863200
Q gi|254780451|r 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYL 587 (896)
Q Consensus 508 iGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L 587 (896)
+|++|.|+|-.+ ++..+++-.+.|-.+ .+....|. |. +++.+...||. .|.+|+-+.-
T Consensus 29 vGH~GTLDP~At------GvL~i~vG~aTK~~~-~~~~~~K~-Y~------------~~~~lG~~TdT--~D~~G~i~~~ 86 (210)
T cd00506 29 VGHGGTLDPFAT------GVLVVGIGKATKLLK-HLLAATKD-YT------------AIGRLGQATDT--FDATGQVIEE 86 (210)
T ss_pred CCCCCCCCCCCC------CEEEEEECHHHHHHH-HHCCCCCE-EE------------EEEEECCEECC--CCCCCCEECC
T ss_conf 576866697452------428999778887999-87559977-87------------99998530179--9988862133
Q ss_pred CCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 156-888578888876415832100012233478712201557877620567433342378
Q gi|254780451|r 588 RDI-WPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP 647 (896)
Q Consensus 588 ~Di-wPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~p 647 (896)
.+. .++.++|++++.+.... +.+-++..-++.+..-..|+|.-+-..+..+
T Consensus 87 ~~~~~~~~~~i~~~l~~f~G~---------~~Q~PP~ySA~Kv~Gkr~Y~lAR~g~~v~~~ 138 (210)
T cd00506 87 TPYDHITHEQLERALETLTGD---------IQQVPPLYSAVKRQGQRAYELARRGLLVPDE 138 (210)
T ss_pred CCCCCCCHHHHHHHHHHCCCC---------EEECCCHHHEEEECCCCHHHHHHCCCCCCCC
T ss_conf 689989999999999866577---------6551855775631783489998668621346
No 90
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=57.17 E-value=13 Score=16.38 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHCC----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 119999998874048----6657999999986123554577766364532522000003579999999999999719999
Q gi|254780451|r 42 CSMKVLLENLLRFED----GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDP 117 (896)
Q Consensus 42 ~s~rillEn~~R~~~----~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp 117 (896)
.++|=||..+.++.= =...+.+.+++++.=-+..+++ .=|.+.|. ...+.|.+.+. .|-.++++
T Consensus 4 V~~k~lL~~A~~~~YAV~AfNv~n~e~~~Avi~AAee~~sP-vIlq~s~g---~~~~~g~~~l~---~~~~~a~~----- 71 (347)
T PRK09196 4 ISLRQLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSP-VILQASAG---ARKYAGEPFLR---HLILAAVE----- 71 (347)
T ss_pred CCHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCC-EEEECCHH---HHHHCCHHHHH---HHHHHHHH-----
T ss_conf 15899999999889489987679899999999999996899-89998731---77665879999---99999998-----
Q ss_pred HHCCCCCCEEEEEECC
Q ss_conf 9928789813998683
Q gi|254780451|r 118 QNINPLVPVDLVIDHS 133 (896)
Q Consensus 118 ~~inp~vp~dlviDHs 133 (896)
-.+.|||-||.||.
T Consensus 72 --~~~~VPValHLDHg 85 (347)
T PRK09196 72 --EYPHIPVVMHQDHG 85 (347)
T ss_pred --HCCCCCEEEECCCC
T ss_conf --56899889974788
No 91
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=56.53 E-value=13 Score=16.31 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHH
Q ss_conf 730799988667617089997647898885053552322331789898881
Q gi|254780451|r 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNL 831 (896)
Q Consensus 781 GSSRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L 831 (896)
++.-.|+++.-.|-||++|++.+.--=-..-|+..||-|+....++..+.+
T Consensus 47 ~~~dk~~~~i~~L~dC~~v~~~~IG~~aa~~L~~~gI~Pik~~~~~~I~~~ 97 (102)
T cd00853 47 GNEDKLAARLEALEDCAILYCAAIGGPAAARLVRAGIHPIKVPEGEPIAEL 97 (102)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEECCCCCCHHHH
T ss_conf 736789999988779939998123965999999849989666999719999
No 92
>PRK07232 malic enzyme; Reviewed
Probab=54.94 E-value=14 Score=16.13 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=20.4
Q ss_pred HEECCCCHHHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 2000003579999999999999719999992
Q gi|254780451|r 90 LMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 (896)
Q Consensus 90 ~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~i 120 (896)
++||=---.|++-+|++..+++-.|.+-+.+
T Consensus 157 v~hddqhgtaiv~~a~l~nal~~~~k~~~~~ 187 (753)
T PRK07232 157 VFHDDQHGTAIISAAALLNALELVGKKIEDV 187 (753)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCHHHE
T ss_conf 2337765189999999999999838646671
No 93
>KOG2650 consensus
Probab=54.83 E-value=2.4 Score=21.68 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=11.4
Q ss_pred EECCCCCCCHHHHHHHHHHHH
Q ss_conf 104676545999877889998
Q gi|254780451|r 435 ITSCTNTFNPSVMIGAGLLAR 455 (896)
Q Consensus 435 IgSCTNtSnp~~miaAgllAk 455 (896)
|+.|-|.+++.+.+-||+-||
T Consensus 161 Is~~~~~~k~~I~id~GiHAR 181 (418)
T KOG2650 161 ISGGDNRNKKAIFIDAGIHAR 181 (418)
T ss_pred ECCCCCCCCCEEEEECCHHHH
T ss_conf 558888888369994652277
No 94
>pfam07972 Flavodoxin_NdrI NrdI Flavodoxin like.
Probab=54.59 E-value=6.7 Score=18.35 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=14.5
Q ss_pred CCCCCHHHHHCC--CCC-EEEEEEECCCCCCCCC
Q ss_conf 768830221011--366-3587863367666654
Q gi|254780451|r 512 GALKKEISEVIH--QKS-LVVAGVLSGNRNFEGR 542 (896)
Q Consensus 512 G~l~~~i~~~i~--~~~-l~~~sV~SgNRNFeGR 542 (896)
+.++..+.+=+. +|. +...-+.|||||| |.
T Consensus 54 ~~vp~~v~~FL~~~~N~~~~~GVi~SGNrNf-G~ 86 (121)
T pfam07972 54 EAVPKQVIRFLNYEKNRKLLRGVIGSGNRNF-GD 86 (121)
T ss_pred CCCCHHHHHHHHCHHHHHHEEEEEECCCCCH-HH
T ss_conf 8268899999856554532678882387614-88
No 95
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=54.02 E-value=14 Score=16.03 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCC
Q ss_conf 76666546854331000597899999851612223100
Q gi|254780451|r 536 NRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIK 573 (896)
Q Consensus 536 NRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~ 573 (896)
||||+.+.......+.=-.|++.+-....-+..|.+..
T Consensus 134 NRnFPD~~~~~~~~~~~~qPEt~Avm~w~~~~~FvLSa 171 (372)
T cd03868 134 NRNFPDQFEGKLQRLSERQPETVAMMKWIRSNPFVLSG 171 (372)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 45686011345666666780699999998628924999
No 96
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=53.88 E-value=5.1 Score=19.25 Aligned_cols=54 Identities=20% Similarity=0.421 Sum_probs=34.4
Q ss_pred HHHHHHHCCC---CCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 9999851612---22310023554888863200156-88857888887641583210001223347871
Q gi|254780451|r 558 VVAYALAGNV---RKNLIKDPIGEDQQGSPVYLRDI-WPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDS 622 (896)
Q Consensus 558 VvA~AiaG~I---~~d~~~dplg~~~~G~~v~L~Di-wPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~ 622 (896)
|++--+|-|| .+|+.+||- +.|-.|-++-| +|.++...-+ |.++.|.....|-.
T Consensus 192 ~A~KG~ADR~~~~A~D~Y~E~Y---P~~DAVLF~RILY~~N~Ql~T~--------l~~KAyDAl~SGGR 249 (306)
T TIGR02716 192 VAEKGLADRIRGVAVDIYKESY---PEADAVLFSRILYSANEQLSTI--------LLKKAYDALRSGGR 249 (306)
T ss_pred HHHCCCCCCCCCEEEEECCCCC---CCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHCCCCCE
T ss_conf 5414510046631565033875---7711656778876446789999--------99988752257880
No 97
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=53.32 E-value=14 Score=15.95 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=40.2
Q ss_pred CEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCC---EEEEEECC-HHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 78737999998998199889994677786730799988667617---08999764-789888505355232233178989
Q gi|254780451|r 752 EELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLG---VRSVIAES-FERIHRSNLIGMGVIPFAFGKGIS 827 (896)
Q Consensus 752 ~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRdwAAkgp~lLG---VkAVIA~S-FeRIHrsNLv~mGiLPL~F~~~~~ 827 (896)
-.|++-|.+... +.+.|.++|==.|-+-|.-|.|.-. +.+ .-+-+-.. |++|-++ +|+--....+.++
T Consensus 438 F~m~~qEL~Ta~-r~~lpv~ivv~nN~~~g~v~~~q~~---~~~~~~~~~~~~~~~f~klAea----~G~~g~rv~~~~e 509 (550)
T COG0028 438 FMMNGQELETAV-RYGLPVKIVVLNNGGYGMVRQWQEL---FYGGRYSGTDLGNPDFVKLAEA----YGAKGIRVETPEE 509 (550)
T ss_pred HHCCHHHHHHHH-HHCCCEEEEEEECCCHHHHHHHHHH---HCCCCCCCCCCCCCCHHHHHHH----CCCEEEEECCHHH
T ss_conf 850798999999-8689979999978443450899887---3477855111588768999997----7982599688899
No 98
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=53.29 E-value=7.6 Score=17.97 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=26.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCC
Q ss_conf 8673079701618999999985885777750530205532242127776
Q gi|254780451|r 465 KPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGA 513 (896)
Q Consensus 465 ~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~ 513 (896)
+.+||.. +.||..+. -++.|++.|..|. .||+|+-.-|-
T Consensus 128 N~GVkLt-~~~s~~le-------~Lk~Le~~GVeIl--~CGtCLd~y~L 166 (194)
T TIGR03527 128 NGGVKLT-TEGSEVLE-------DLKELEKKGVEIL--SCGTCLDFYGL 166 (194)
T ss_pred CCCEEEE-CCCCHHHH-------HHHHHHHCCCEEE--ECHHHHHHHCC
T ss_conf 4837995-18972799-------9999998799899--86315866285
No 99
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=52.97 E-value=11 Score=16.71 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=23.3
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 531046765459998778899988986498758
Q gi|254780451|r 433 ASITSCTNTFNPSVMIGAGLLARNAVRAGLKSK 465 (896)
Q Consensus 433 AaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~ 465 (896)
.+||+|...- -.-.+||..|-|.|.++|.+++
T Consensus 2 vaVTaCptGi-AHTymAAeaL~~aA~~~G~~ik 33 (96)
T cd05569 2 VAVTACPTGI-AHTYMAAEALEKAAKKLGWEIK 33 (96)
T ss_pred EEEECCCCHH-HHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8992188609-8999999999999998799599
No 100
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=52.95 E-value=8 Score=17.81 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=49.7
Q ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 1456530235777665203601223212577765772245389978737999998998199889994677
Q gi|254780451|r 708 NQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVE 777 (896)
Q Consensus 708 NsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~ 777 (896)
+=|..+|-|-.+|-|-||++.++++.|-.-.-.+..+|.+.++ +=+.-++|.--|.|.+++=+++
T Consensus 486 DFtADWCvtCK~~E~~tf~d~~V~~al~~~~llk~DvT~~~~~-----~~all~~~~~~GpP~~lf~~~~ 550 (577)
T PRK00293 486 DLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAE-----DVALLKHYNVLGLPTILFFDAQ 550 (577)
T ss_pred EEECHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCHH-----HHHHHHHCCCCCCCEEEEECCC
T ss_conf 9984687779999998579889999863981899977999999-----9999997499889889999999
No 101
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=52.87 E-value=10 Score=16.99 Aligned_cols=53 Identities=30% Similarity=0.482 Sum_probs=35.0
Q ss_pred HHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHCCCEE
Q ss_conf 1005998899989998-8754267899998774214880786-08876216778986335113
Q gi|254780451|r 136 VDYSGNKDAVTRNKDL-EYQRNEERYRFLKWGQKSFKNFRVV-PPGTGICHQINLEYLGQSVW 196 (896)
Q Consensus 136 vd~~g~~~a~~~n~~~-e~~rN~Ery~Flkwa~~~f~~~~v~-pPG~GI~HQvnlE~la~vv~ 196 (896)
.|..|..+|-+.=++. ||=||-+||.=| +.+-=+|+=.+ |||+|=== ||+=|-
T Consensus 59 ~DVAG~dEAKeEl~EiVdFLK~P~kf~~L--GaKIPKGVLLvGPPGTGKTL------LAKAvA 113 (505)
T TIGR01241 59 KDVAGIDEAKEELVEIVDFLKNPSKFTKL--GAKIPKGVLLVGPPGTGKTL------LAKAVA 113 (505)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHC--CCCCCCCEEEECCCCCCHHH------HHHHHH
T ss_conf 34445323334333134222696379872--78898714731787842467------887520
No 102
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=51.94 E-value=15 Score=15.80 Aligned_cols=10 Identities=60% Similarity=0.610 Sum_probs=8.7
Q ss_pred CCCEEEEEEC
Q ss_conf 8981399868
Q gi|254780451|r 123 LVPVDLVIDH 132 (896)
Q Consensus 123 ~vp~dlviDH 132 (896)
-|||-||.||
T Consensus 92 ~VPVaLHLDH 101 (349)
T PRK09197 92 GVPVILHTDH 101 (349)
T ss_pred CCCEEEECCC
T ss_conf 9988997888
No 103
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.
Probab=51.41 E-value=15 Score=15.74 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEC
Q ss_conf 16189999999858857777505302055322421277768830221011366358786336766665468543310005
Q gi|254780451|r 474 PGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLL 553 (896)
Q Consensus 474 PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLa 553 (896)
+.|..|...+.+. | |+. =+|++|-|+|-.+ ++..+++=...|= -.-+....|. |.
T Consensus 11 ~tS~~~v~~~k~~-----~---~~k--------KvGH~GTLDP~At------GvL~i~~g~aTKl-~~~~~~~~K~-Y~- 65 (277)
T cd02573 11 LTSHDVVQKVRRL-----L---GTK--------KVGHTGTLDPLAT------GVLPIALGEATKL-SQYLLDADKT-YR- 65 (277)
T ss_pred CCHHHHHHHHHHH-----H---CCC--------CCCCCCCCCCCCC------CEEEEEECHHHHH-HHHHCCCCCE-EE-
T ss_conf 9989999999998-----5---888--------5563757797660------3378998888705-2786789917-99-
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 9789999985161222310023554888863200156-888578888876415832100012233478712201557877
Q gi|254780451|r 554 SPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDI-WPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPES 632 (896)
Q Consensus 554 SP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~Di-wPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~ 632 (896)
.++.+...||. .|.+|+-+.-.+. -|+.++|++++.+.... +.+-++..-++.+..-
T Consensus 66 -----------~~~~lG~~TdT--~D~~G~i~~~~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySA~Kv~Gk 123 (277)
T cd02573 66 -----------ATVRLGEATDT--DDAEGEIIETSPPPRLTEEEIEAALKAFTGE---------IEQVPPMYSAVKVNGK 123 (277)
T ss_pred -----------EEEEECCCCCC--CCCCCCEECCCCCCCCCHHHHHHHHHHCCCC---------EEECCCHHHHHHHCCH
T ss_conf -----------99998760476--5567987113789999999999999978770---------7871988897464585
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 6205674333423
Q gi|254780451|r 633 ETYMWDEKSTYVR 645 (896)
Q Consensus 633 ~~y~w~~~StyI~ 645 (896)
..|+|.-+-..|.
T Consensus 124 rlY~lAR~G~~v~ 136 (277)
T cd02573 124 RLYELARAGEEVE 136 (277)
T ss_pred HHHHHHHCCCCCC
T ss_conf 1999987798455
No 104
>PRK10427 putative fructose-like phosphotransferase EIIB subunit 3; Provisional
Probab=51.31 E-value=15 Score=15.73 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=23.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7531046765459998778899988986498758
Q gi|254780451|r 432 IASITSCTNTFNPSVMIGAGLLARNAVRAGLKSK 465 (896)
Q Consensus 432 IAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~ 465 (896)
|.+||||..+ .-.-.+||..|.+.|.++|.+++
T Consensus 5 IVaVTACptG-IAHTyMAAeaLe~aak~~G~~ik 37 (114)
T PRK10427 5 LVAVTACVSG-VAHTYMAAERLEKLCQLEKWGVK 37 (114)
T ss_pred EEEEECCCCH-HHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999538753-98999999999999998699689
No 105
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=50.88 E-value=9.1 Score=17.40 Aligned_cols=30 Identities=33% Similarity=0.661 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHCC--CCCEEEEE-EECCCCCCC
Q ss_conf 7768830221011--36635878-633676666
Q gi|254780451|r 511 SGALKKEISEVIH--QKSLVVAG-VLSGNRNFE 540 (896)
Q Consensus 511 sG~l~~~i~~~i~--~~~l~~~s-V~SgNRNFe 540 (896)
.|..|+.+.+=+. +|.-.+.+ +.||||||-
T Consensus 55 ~g~VP~~v~~FL~~~~N~~~l~GVi~SGNrNfG 87 (136)
T PRK03600 55 KGAVPKQVIRFLNDEHNRKLLRGVIASGNRNFG 87 (136)
T ss_pred CCCCCHHHHHHHHCCCCHHHEEEEEECCCCCHH
T ss_conf 882678999988373035462678824887178
No 106
>PRK03287 truB tRNA pseudouridine synthase B; Provisional
Probab=50.70 E-value=16 Score=15.67 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=57.4
Q ss_pred CCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21277768830221011366358786336766665468543310005978999998516122231002355488886320
Q gi|254780451|r 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVY 586 (896)
Q Consensus 507 CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~ 586 (896)
=+|++|-|+|-.+ ++..+++-...| |-.-+....|. | -+++.+...||. .|.+|+-+.
T Consensus 37 KvGH~GTLDP~At------GvL~v~~G~aTK-l~~~~~~~~K~-Y------------~a~~~lG~~TdT--~D~eG~v~~ 94 (298)
T PRK03287 37 KVGHAGTLDPMAT------GVLVLGVERATK-LLGHLVATDKS-Y------------TATIRLGQTTST--DDAEGEVLS 94 (298)
T ss_pred CCCCCCCCCCCCC------CEEEEEECHHHC-CCHHHCCCCCE-E------------EEEEEECCCCCC--CCCCCCEEE
T ss_conf 3366857797460------438999787762-18746557817-9------------999998973777--667787750
Q ss_pred CCCCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01568-88578888876415832100012233478712201557877620567433342
Q gi|254780451|r 587 LRDIW-PKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYV 644 (896)
Q Consensus 587 L~Diw-Ps~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI 644 (896)
-.+.- ++.++|++++.+++.. +.+-++..-++.+..-..|.|.-+-..+
T Consensus 95 ~~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySA~Kv~GkrlY~lAR~G~~v 144 (298)
T PRK03287 95 SAPASHLTEEAIAAAVAALTGE---------IMQVPSAVSAIKVDGKRAYARVRAGEEV 144 (298)
T ss_pred CCCCCCCCHHHHHHHHHHCCCC---------EEEECCCHHEEEECCHHHHHHHHCCCCC
T ss_conf 3679989999999999975762---------4470772132332679899999759842
No 107
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=50.56 E-value=16 Score=15.65 Aligned_cols=52 Identities=23% Similarity=0.212 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECC--CHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCC
Q ss_conf 54599987788999889864987586730797016--189999999858857777505302055322421277
Q gi|254780451|r 441 TFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPG--SQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNS 511 (896)
Q Consensus 441 tSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PG--S~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGns 511 (896)
+++|+++..| ...+-|| |......|++.|+.+.+.+.=.. --|==|.|+||.
T Consensus 27 ~~~p~~i~~a------------------d~LILPGg~s~~~~~~L~~~gl~~~i~~~i~~-gkP~LGIClGMQ 80 (183)
T cd01749 27 VRTPEDLEGI------------------DGLIIPGGESTTIGKLLRRTGLLDPLREFIRA-GKPVFGTCAGLI 80 (183)
T ss_pred ECCHHHHHHC------------------CEEEECCCCHHHHHHHHHHCCCHHHHHHHHHC-CCCEEEHHHHHH
T ss_conf 8999998318------------------98998894089999999887888999999984-998475107788
No 108
>TIGR00564 trpE_most anthranilate synthase component I; InterPro: IPR005256 This enzyme resembles some other chorismate-binding enzymes, including para-aminobenzoate synthase (pabB) and isochorismate synthase. There is a fairly deep split between two sets, seen in the pattern of gaps as well as in amino acid sequence differences. This group includes eukaryotes, archaea, and many bacterial lineages; sequences from the second group may resemble pabB more closely than other trpE from the other group. The other group includes Gram-negative proteobacteria such as Escherichia coli and Helicobacter pylori but also the Gram-positive organism Corynebacterium glutamicum, and is described by IPR005257 from INTERPRO. A sequence from Bacillus subtilis that scores above the trusted cut-off is annotated as PabB rather than TrpE. However, it is part of an operon that is required for Trp as well as folate biosynthesis, is Trp-repressible, and contains TrpG. It is likely that this sequence annotated as PabB functions both as PabB and as TrpE. ; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=50.47 E-value=12 Score=16.61 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=10.5
Q ss_pred EEEEECCCCCH-H---HCCCCCC
Q ss_conf 89996588572-3---3164565
Q gi|254780451|r 668 ILCLLGDKITT-D---HISPAGS 686 (896)
Q Consensus 668 vL~~lGD~iTT-D---HISPAG~ 686 (896)
|-..|.+..|- | -+-|||-
T Consensus 418 V~G~L~~~~t~~DALra~lPAGT 440 (543)
T TIGR00564 418 VEGRLKDGLTAIDALRATLPAGT 440 (543)
T ss_pred EEEEECCCCCHHHHHHHHCCCCC
T ss_conf 99983799773026643367764
No 109
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=50.34 E-value=16 Score=15.63 Aligned_cols=75 Identities=24% Similarity=0.256 Sum_probs=46.3
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHH---------HHCCCCCCCCCEEEEEC-CCHHHHHHHHHCC----CHHHHH
Q ss_conf 544575310467654599987788999889---------86498758673079701-6189999999858----857777
Q gi|254780451|r 428 GDVAIASITSCTNTFNPSVMIGAGLLARNA---------VRAGLKSKPWVKTSCAP-GSQVSYEYLVQAG----LVEYLE 493 (896)
Q Consensus 428 g~VvIAaIgSCTNtSnp~~miaAgllAkkA---------v~~Glkv~p~Vkt~l~P-GS~~V~~~L~~~G----ll~~L~ 493 (896)
.-++..|+|--||+- ..+ +|. |+.| -+.+.+|+ +-..+.| |++.+.+.+-++| +++.|.
T Consensus 268 Ai~v~~A~GGSTN~v-LHL-lAi---A~~aGv~ltldD~d~is~~vP--~L~~v~Png~~y~~~d~~~AGGvp~v~~~L~ 340 (575)
T COG0129 268 AIVVDMATGGSTNAV-LHL-LAI---AREAGVDLTLDDFDRISRKVP--LLAKVYPNGGKYDMEDFHRAGGVPAVMKELL 340 (575)
T ss_pred HHHHHHHHCCHHHHH-HHH-HHH---HHHCCCCCCHHHHHHHHCCCC--EEEEECCCCCCCCHHHHHHCCCHHHHHHHHH
T ss_conf 999999814355189-999-999---987699999899998743487--3789668887524888887469999999999
Q ss_pred HHCCEECCCCCCCCCCCC
Q ss_conf 505302055322421277
Q gi|254780451|r 494 ALGFSLVGFGCTTCIGNS 511 (896)
Q Consensus 494 ~aGf~i~~~GCg~CiGns 511 (896)
+.| ++-.-|.|+.|.+
T Consensus 341 ~~G--LLh~D~~TV~G~T 356 (575)
T COG0129 341 KAG--LLHGDVLTVTGKT 356 (575)
T ss_pred HCC--CCCCCCCEEECCC
T ss_conf 769--8677765141757
No 110
>pfam01509 TruB_N TruB family pseudouridylate synthase (N terminal domain). Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes TruB, a pseudouridylate synthase that specifically converts uracil 55 to pseudouridine in most tRNAs. This family also includes Cbf5p that modifies rRNA.
Probab=50.34 E-value=16 Score=15.63 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=57.0
Q ss_pred CCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21277768830221011366358786336766665468543310005978999998516122231002355488886320
Q gi|254780451|r 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVY 586 (896)
Q Consensus 507 CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~ 586 (896)
=+|++|-|||-.+ ++..+++-.+.|-.+-=+ ...|. |. +++.|...||. .|.+|+-+.
T Consensus 8 KvGH~GTLDP~As------GlL~i~ig~~TK~~~~~~-~~~K~-Y~------------~~~~~G~~TdT--~D~eG~v~~ 65 (149)
T pfam01509 8 KVGHTGTLDPLAT------GVLPVCVGKATKLLQYLL-DADKE-YR------------ATIRLGVATDT--LDAEGEIVE 65 (149)
T ss_pred CCCCCCCCCCCCE------EEEEEEECHHHHHHHHHC-CCCCE-EE------------EEEEECCCCCC--CCCCCCEEE
T ss_conf 0242744698665------689999987871218875-89817-99------------99986256689--897776640
Q ss_pred CCCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 0156-888578888876415832100012233478712201557877620567433
Q gi|254780451|r 587 LRDI-WPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKS 641 (896)
Q Consensus 587 L~Di-wPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~S 641 (896)
-.+. -++.++|++.+.+....- .+-++..-++.+..-..|.|.-+-
T Consensus 66 ~~~~~~~~~~~i~~~l~~f~G~~---------~Q~PP~ySA~Kv~GkraY~lAR~G 112 (149)
T pfam01509 66 TAPVDHITEEKIEEVLASFTGEI---------EQVPPMYSAVKVNGKRLYELAREG 112 (149)
T ss_pred EECCCCCCHHHHHHHHHHCCCCE---------EECCCHHHEEHHCCCCHHHHHHCC
T ss_conf 60589999999999999655856---------462836770200783789998789
No 111
>PRK09765 2-O-a-mannosyl-D-glycerate specific PTS transporten components IIABC; Provisional
Probab=48.87 E-value=17 Score=15.47 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=19.0
Q ss_pred CCCHHHHHHHC---CEECCC--CCCCCCCCCCCCCCH
Q ss_conf 58857777505---302055--322421277768830
Q gi|254780451|r 486 AGLVEYLEALG---FSLVGF--GCTTCIGNSGALKKE 517 (896)
Q Consensus 486 ~Gll~~L~~aG---f~i~~~--GCg~CiGnsG~l~~~ 517 (896)
.++...|..++ ..++|. ||++|+-+.||..+.
T Consensus 442 ~~l~~~L~~m~~~~~ilLG~ilG~M~a~DmGGPvNKa 478 (638)
T PRK09765 442 NSLTAWLNGLSGSNALLLGAILGFMCSFDLGGPVNKA 478 (638)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9999999864441299999999888851168832889
No 112
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=47.34 E-value=18 Score=15.31 Aligned_cols=58 Identities=31% Similarity=0.567 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCC
Q ss_conf 4676545999877889998898649875867307970161899999998588577775053020553
Q gi|254780451|r 437 SCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFG 503 (896)
Q Consensus 437 SCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~G 503 (896)
-|| .+|+++-|..-+.|+| |-+ |.|-- .||+.....-++..|+++..+++|+.++.+-
T Consensus 55 ~~t--ThPevv~Av~~~v~e~---g~e--p~vgd--~pg~~st~~vlk~~Gi~dla~~~~~~iv~F~ 112 (293)
T COG2006 55 PCT--THPEVVAAVAEVVKEA---GGE--PVVGD--SPGFGSTSGVLKTTGILDLAEALGLEIVNFD 112 (293)
T ss_pred CCC--CCHHHHHHHHHHHHHH---CCC--CEEEC--CCCCCCHHHHHHHHCHHHHHHHCCCCEEEEC
T ss_conf 775--6989999999999980---896--06851--7887538899998288999997299516402
No 113
>PRK06365 acetyl-CoA acetyltransferase; Provisional
Probab=47.31 E-value=18 Score=15.31 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCC
Q ss_conf 8999999863999889999998746410236767667886306999980314301226566564
Q gi|254780451|r 324 RGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPES 387 (896)
Q Consensus 324 e~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d 387 (896)
-.+.+|++..|-+.|+...|-.-.+.++. .-|.|.|-+.+.+|==-=.|+|+.|-+=-|
T Consensus 149 l~a~rym~~yG~t~e~lA~Vavk~r~~A~-----~NP~A~~~~~iTvedvl~s~~Ia~PL~lld 207 (415)
T PRK06365 149 MMAVRHMYEFGTTVEQMAKVSVKNHGNAI-----HNPYAQSPMKLTVEDVRKAPMVSYPLTRLD 207 (415)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHC-----CCHHHHCCCCCCHHHHHCCCCCCCCCHHHC
T ss_conf 99999999869889999999999877552-----593764888899899831884436720212
No 114
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=47.30 E-value=18 Score=15.31 Aligned_cols=77 Identities=21% Similarity=0.130 Sum_probs=36.6
Q ss_pred HHHCCCHHHHHHHHH------HHHCCCCCCCHHHHHHHHHCCC-CCCCCCCCCC-----CCCCHH--HEECCCCHHHHHH
Q ss_conf 544571199999988------7404866579999999861235-5457776636-----453252--2000003579999
Q gi|254780451|r 37 ISRLPCSMKVLLENL------LRFEDGCTVTKEQIHAFVKWLD-NKGTVESEVS-----YRFSRV--LMQDFTGVPAVVD 102 (896)
Q Consensus 37 ~~~lP~s~rillEn~------~R~~~~~~~~~~~~~~~~~w~~-~~~~~~~ei~-----f~p~Rv--~~qD~Tg~pa~vd 102 (896)
-+-|||-.|-||||- -|-.|...--++.+..=..-.. ....+...|| |-|.|. .--|+|--..+.+
T Consensus 463 ~dLLaYLVRRLLENGANSSFVnqi~D~~v~~e~L~~dP~~~~~~~~~~~~p~IplP~~lfg~~R~NS~G~Dl~~~~~~~~ 542 (1215)
T PRK11905 463 ETLLAYLVRRLLENGANSSFVNRIVDENVPIEELIADPVEKVAAMAVAPHPQIPLPRDLYGPERRNSKGLDLSDEATLAA 542 (1215)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 03099999999864772888867504799999987698999854544678889991776588688876647899999999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999971
Q gi|254780451|r 103 LAAMRDAIVVL 113 (896)
Q Consensus 103 laamR~~~~~~ 113 (896)
|.+-++.....
T Consensus 543 l~~~~~~~~~~ 553 (1215)
T PRK11905 543 LDEALDAFAAN 553 (1215)
T ss_pred HHHHHHHHHCC
T ss_conf 99999987515
No 115
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=47.21 E-value=11 Score=16.90 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=12.3
Q ss_pred CEECCC-CEEEEEEECCCCCCCCHHHHHH
Q ss_conf 141167-2899999767786443688999
Q gi|254780451|r 245 ISMLLP-EVVGFEVTGSLQEGVTATDLVL 272 (896)
Q Consensus 245 ~~~~vP-evigv~L~G~L~~gVtakDiiL 272 (896)
+...+| |-|..++||.+..=.+|.-|.+
T Consensus 122 ysQV~PmediNLHfTGD~HAItaA~NL~~ 150 (587)
T PRK13507 122 LSQCIPLTEFSLGLTGDINAVMNAHNLAM 150 (587)
T ss_pred EEEEEEHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 03677846702565672788876315999
No 116
>PRK02193 truB tRNA pseudouridine synthase B; Provisional
Probab=46.76 E-value=18 Score=15.25 Aligned_cols=110 Identities=13% Similarity=0.269 Sum_probs=60.8
Q ss_pred CCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12777688302210113663587863367666654685433100059789999985161222310023554888863200
Q gi|254780451|r 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYL 587 (896)
Q Consensus 508 iGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L 587 (896)
+|++|-|+|-.+ ++..+++-...|-.+= +....|. |. +++.+...||. .|.+|+-+.-
T Consensus 29 vGH~GTLDP~At------GvL~v~~G~aTK~~~~-~~~~~K~-Y~------------~~~~lG~~TdT--~D~eG~v~~~ 86 (279)
T PRK02193 29 IGHAGTLDPLAT------GLLLVATDEDTKLLDY-LDQKTKT-YL------------AKIQLGFWSTT--YDSEGQIINV 86 (279)
T ss_pred CCCCCCCCCCCE------EEEEEEECHHHHHCHH-HCCCCCE-EE------------EEEEECCCCCC--CCCCCCEEEE
T ss_conf 361746798674------4799997866512645-5457826-99------------99996775776--5677745630
Q ss_pred CC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 15-68885788888764158321000122334787122015578776205674333423788
Q gi|254780451|r 588 RD-IWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPP 648 (896)
Q Consensus 588 ~D-iwPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~StyI~~pP 648 (896)
.+ .-++.++|.+++.+.... +.+-++..-++.+..-..|+|.-+-..+..+|
T Consensus 87 ~~~~~~~~~~i~~~l~~f~G~---------i~Q~PP~ySA~Kv~GkrlY~lAR~g~~ve~~~ 139 (279)
T PRK02193 87 SSNIKVTKDNLEQALNRFSGS---------QKQVPPVFSAKKVNGKRAYHYARQGKQIELKP 139 (279)
T ss_pred CCCCCCCHHHHHHHHHHCCCC---------EEECCCHHHHHHHCCHHHHHHHHCCCEEECCC
T ss_conf 489999999999999966787---------89828889962315635898986685430564
No 117
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=46.56 E-value=10 Score=17.09 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=28.1
Q ss_pred HHHHHCCCHH-HHHHHCCEECCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 9999858857-77750530205532242127776883022101
Q gi|254780451|r 481 EYLVQAGLVE-YLEALGFSLVGFGCTTCIGNSGALKKEISEVI 522 (896)
Q Consensus 481 ~~L~~~Gll~-~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i 522 (896)
..+++.|+.- ...++|++-+.+|.-||+|- ||.+.+.-+.|
T Consensus 67 ~~a~~~~l~~~~v~DAG~Tei~~gt~Tvlai-gP~~~~~id~i 108 (115)
T cd02407 67 KKAKELGLPHSLIQDAGRTQIPPGTPTVLAI-GPAPKEKVDKV 108 (115)
T ss_pred HHHHHCCCCEEEEEECCCCEECCCCEEEEEE-CCCCHHHHHHH
T ss_conf 9999879988999939985314897489997-77878899997
No 118
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=46.46 E-value=4.7 Score=19.47 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 76666546854331000597899999851612223100235548888632001568885788888764158321000122
Q gi|254780451|r 536 NRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYS 615 (896)
Q Consensus 536 NRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~~f~~~y~ 615 (896)
=|-|.++++|.+ .++..++=|--+.||+-+.+.+--+- .-+.+-|.+++.+.+.|++..-.|.
T Consensus 80 wR~ir~~~~p~I--ILIGGasGVGkStIA~ElA~rLgI~~---------------visTD~IREvlR~ii~~~l~PtLh~ 142 (299)
T COG2074 80 WRRIRKMKRPLI--ILIGGASGVGKSTIAGELARRLGIRS---------------VISTDSIREVLRKIISPELLPTLHT 142 (299)
T ss_pred HHHHHCCCCCEE--EEECCCCCCCHHHHHHHHHHHCCCCE---------------EECCHHHHHHHHHHCCHHHCCHHHH
T ss_conf 999861578759--99617887772579999999729861---------------0042479999997379774553567
Q ss_pred CCCCCCHHHCCCCCCCCC
Q ss_conf 334787122015578776
Q gi|254780451|r 616 DVFKGDSSWWNIEVPESE 633 (896)
Q Consensus 616 ~i~~g~~~w~~l~~~~~~ 633 (896)
..| .+|+.+..+...
T Consensus 143 Ssy---~Awkalr~~~~~ 157 (299)
T COG2074 143 SSY---DAWKALRDPTDE 157 (299)
T ss_pred HHH---HHHHHHCCCCCC
T ss_conf 577---999983689999
No 119
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase; InterPro: IPR011880 Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA) . Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in Gram-positive prokaryotes . In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions ..
Probab=46.01 E-value=18 Score=15.17 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=8.0
Q ss_pred CCCCEEEHHHHHHHH
Q ss_conf 656413677730116
Q gi|254780451|r 384 RPESRLSLSEVPSSF 398 (896)
Q Consensus 384 ~P~d~v~l~~v~~~~ 398 (896)
+|+|--.|+|+..-+
T Consensus 40 ~PdD~~~L~Dl~kfP 54 (431)
T TIGR02155 40 HPDDLQSLSDLAKFP 54 (431)
T ss_pred CCCHHHCHHHHHHCC
T ss_conf 841220236676278
No 120
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=45.80 E-value=18 Score=15.15 Aligned_cols=42 Identities=17% Similarity=0.056 Sum_probs=30.1
Q ss_pred EEEEECC--CHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCC
Q ss_conf 0797016--189999999858857777505302055322421277
Q gi|254780451|r 469 KTSCAPG--SQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNS 511 (896)
Q Consensus 469 kt~l~PG--S~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGns 511 (896)
..++.|| |....+.|++.||.+.|.+.=. -.-|==|.|+||.
T Consensus 45 d~LILPGG~f~~~m~~L~~~gl~~~i~~~i~-~g~PiLGIClGmQ 88 (196)
T PRK13527 45 DALIIPGGESTTIGRLMKRYGILDEIKEKIE-EGLPILGTCAGLI 88 (196)
T ss_pred CEEEECCCCHHHHHHHHHHCCCHHHHHHHHH-CCCCEEEECHHHH
T ss_conf 9799899667999999888688899999997-6997799708799
No 121
>PRK01117 adenylosuccinate synthetase; Provisional
Probab=44.97 E-value=19 Score=15.06 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCCHHHHHCCC----CCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCC
Q ss_conf 224212777688302210113----6635878633676666546854331000597899999851612223100
Q gi|254780451|r 504 CTTCIGNSGALKKEISEVIHQ----KSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIK 573 (896)
Q Consensus 504 Cg~CiGnsG~l~~~i~~~i~~----~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~ 573 (896)
-+|+.| +||.|.+..+.+.+ .+- -....| ||- -+.-||-.+++--|..+.|--.+-+++
T Consensus 270 Y~TRVG-~GPFPTEl~de~g~~lr~~G~-E~GttT------GRp---RR~GWlD~v~lrya~~ing~~~lalTK 332 (431)
T PRK01117 270 YTTRVG-SGPFPTELFDEIGEHLRERGH-EFGTTT------GRP---RRCGWFDAVALRYAVRVNGITGLALTK 332 (431)
T ss_pred CCCCCC-CCCCCCCCCCHHHHHHHHHCC-CCCCCC------CCC---CCCCCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 234305-899973015427889987275-036868------988---366763458899999873887698874
No 122
>PRK06801 hypothetical protein; Provisional
Probab=44.76 E-value=8.7 Score=17.54 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHCCC----CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 1199999988740486----657999999986123554577766364532522000003579999999999999719999
Q gi|254780451|r 42 CSMKVLLENLLRFEDG----CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDP 117 (896)
Q Consensus 42 ~s~rillEn~~R~~~~----~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp 117 (896)
.|+|-||..+-++.-. ...+-+.+++++.=-+..+.+ .=|.+.|..+ .+.|...++.+ +|.++.+
T Consensus 4 v~~k~lL~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sP-vIlq~s~~~~---~~~~~~~~~~~--~~~~a~~----- 72 (286)
T PRK06801 4 ISLANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSP-FIINIAEVHF---KYISLESLVEA--VKFEAAH----- 72 (286)
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCC-EEEECCHHHH---HHCCHHHHHHH--HHHHHHH-----
T ss_conf 26899999999889479998889999999999999997879-8998067577---56699999999--9999987-----
Q ss_pred HHCCCCCCEEEEEECC
Q ss_conf 9928789813998683
Q gi|254780451|r 118 QNINPLVPVDLVIDHS 133 (896)
Q Consensus 118 ~~inp~vp~dlviDHs 133 (896)
..|||-||.||.
T Consensus 73 ----~~VPV~lHLDHg 84 (286)
T PRK06801 73 ----HDIPVVLNLDHG 84 (286)
T ss_pred ----CCCCEEEECCCC
T ss_conf ----799899989999
No 123
>PRK13786 adenylosuccinate synthetase; Provisional
Probab=44.75 E-value=19 Score=15.10 Aligned_cols=59 Identities=29% Similarity=0.375 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCCHHHHHCC----CCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCC
Q ss_conf 22421277768830221011----36635878633676666546854331000597899999851612223100
Q gi|254780451|r 504 CTTCIGNSGALKKEISEVIH----QKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIK 573 (896)
Q Consensus 504 Cg~CiGnsG~l~~~i~~~i~----~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~ 573 (896)
-+|+.| +||.|.+..+.+. +.+- -..+.+| |- -|. -||--+++-=|-.+.|--.+-+++
T Consensus 268 Y~TRVG-~GPFPTEl~~e~g~~lr~~G~-E~GttTG-Rp--RR~------GWlD~v~lrya~~ing~~~lalTK 330 (424)
T PRK13786 268 YITRVG-EGPLPTELKDELGERLQKAGG-EFGTTTG-RG--RRC------GWFDLPLLKKAIALNGYTEIALTK 330 (424)
T ss_pred ECCCCC-CCCCCCCCCCHHHHHHHHCCC-CCCCCCC-CC--CCC------CCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 002326-889986445256666523573-3105469-97--345------522159999999864887698863
No 124
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type; InterPro: IPR011835 This family consists of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; GO: 0009011 starch synthase activity, 0009250 glucan biosynthetic process.
Probab=44.45 E-value=9.9 Score=17.12 Aligned_cols=41 Identities=24% Similarity=0.422 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCE-----EEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 754267899998774214880-----7860887621677898633511310368861798301320688764445
Q gi|254780451|r 153 YQRNEERYRFLKWGQKSFKNF-----RVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMIN 222 (896)
Q Consensus 153 ~~rN~Ery~Flkwa~~~f~~~-----~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~g 222 (896)
+.=|.|||.|+-+|.-.+-+- .-|+|+| |+| .=|=||-++-
T Consensus 116 ~~D~~~RF~~F~~Aa~e~~~~~~~~~~~~~PDN-~vH----------------------------~HDWhtaL~P 161 (517)
T TIGR02095 116 YPDNAERFAFFSRAAAELLSGLLLLPLGWQPDN-VVH----------------------------AHDWHTALVP 161 (517)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE-EEE----------------------------ECCHHHHHHH
T ss_conf 875089999999999999741212334468880-799----------------------------6576899999
No 125
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=44.03 E-value=6.5 Score=18.45 Aligned_cols=73 Identities=25% Similarity=0.355 Sum_probs=40.1
Q ss_pred CCCCHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHH------HCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHH
Q ss_conf 5778544571199999988740486657999999986------1235545777663645325220000035799999999
Q gi|254780451|r 33 GLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFV------KWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAM 106 (896)
Q Consensus 33 ~~~~~~~lP~s~rillEn~~R~~~~~~~~~~~~~~~~------~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaam 106 (896)
|++++. --.-+|--||.--+. .++++.+...+ +|... .+.-|.+-| .-||+=-=-++|.+.|
T Consensus 8 GyPRIG-~~RELK~AlE~YW~g----~~~~~eL~~~a~~LR~~~w~~Q---~~~Gid~ip----~~DFS~YD~VLD~a~~ 75 (756)
T PRK05222 8 GFPRIG-ARRELKKALESYWAG----KISEEELLATARELRARHWQLQ---KEAGIDLIP----VGDFSYYDHVLDTAVL 75 (756)
T ss_pred CCCCCC-CCCHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHH---HHCCCCEEC----CCCCCHHHHHHHHHHH
T ss_conf 788869-871788999999389----9889999999999999999999---985998743----6767338899999999
Q ss_pred HHHHHHCCCCHHHCCCC
Q ss_conf 99999719999992878
Q gi|254780451|r 107 RDAIVVLGGDPQNINPL 123 (896)
Q Consensus 107 R~~~~~~g~dp~~inp~ 123 (896)
+|.-|++-+..
T Consensus 76 ------~g~iP~Rf~~~ 86 (756)
T PRK05222 76 ------LGAIPERFQNL 86 (756)
T ss_pred ------HCCCCHHCCCC
T ss_conf ------48983101577
No 126
>KOG0578 consensus
Probab=43.77 E-value=3.5 Score=20.43 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=12.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHH
Q ss_conf 656314565302357776652
Q gi|254780451|r 704 EKDFNQFGTRRGNHEVMMRGT 724 (896)
Q Consensus 704 ~~dfNsygsRRgNhevM~RGt 724 (896)
...|..|-.|+=+.+|--|++
T Consensus 496 S~~~kdFL~~cL~~dv~~Ras 516 (550)
T KOG0578 496 SPELKDFLDRCLVVDVEQRAS 516 (550)
T ss_pred CHHHHHHHHHHHHCCHHCCCC
T ss_conf 899999999985006301779
No 127
>TIGR00431 TruB tRNA pseudouridine synthase B; InterPro: IPR014780 TruB, the tRNA pseudouridine 55 synthase, converts uracil to pseudouridine in the T loop of most tRNAs of all three domains of life. This model is built on a seed alignment of bacterial proteins only. Saccharomyces cerevisiae protein YNL292w (Pus4) has been shown to be the pseudouridine 55 synthase of both cytosolic and mitochondrial compartments, active at no other position on tRNA and the only enzyme active at that position in the species. A distinct yeast protein YLR175w, (centromere/microtubule-binding protein CBF5) is an rRNA pseudouridine synthase, and the archaeal set is much more similar to CBF5 than to Pus4. It is unclear whether the archaeal proteins found by this model are tRNA pseudouridine 55 synthases like TruB, rRNA pseudouridine synthases like CBF5, or (as suggested by the absence of paralogs in the Archaea) both. CBF5 likely has additional, eukaryotic-specific functions.; GO: 0003723 RNA binding, 0016439 tRNA-pseudouridine synthase activity, 0031119 tRNA pseudouridine synthesis.
Probab=43.03 E-value=19 Score=15.09 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=53.5
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 16122231002355488886320015688857--8888876415832100012233478712201557877620567433
Q gi|254780451|r 564 AGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDS--EIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKS 641 (896)
Q Consensus 564 aG~I~~d~~~dplg~~~~G~~v~L~DiwPs~~--Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~~S 641 (896)
.-.|.|-..||. .|++|+=|.-++..|+-+ +|...+..+. .+|.+-++.+-+++.....+|+
T Consensus 68 ~A~~~lG~~TDT--~D~~G~~V~~~~~~~~~~kA~v~~~L~~F~---------G~I~Q~PP~ySA~k~~GkrlYe----- 131 (236)
T TIGR00431 68 EAEIRLGVRTDT--LDPEGEVVETKPVNPTTEKADVEAALPTFR---------GEIEQVPPMYSALKVNGKRLYE----- 131 (236)
T ss_pred EEEEECCCEECC--CCCCCCEEECCCCCCCHHHHHHHHHHHHHC---------CCEEECCCCCEEEEECCEEHHH-----
T ss_conf 999982760248--689887840125764346889998646617---------3346608861034577872577-----
Q ss_pred CCCCCCCCCC
Q ss_conf 3423788767
Q gi|254780451|r 642 TYVRNPPYFE 651 (896)
Q Consensus 642 tyI~~pPff~ 651 (896)
|.|+--+++
T Consensus 132 -yAR~G~~ve 140 (236)
T TIGR00431 132 -YARQGIEVE 140 (236)
T ss_pred -HHHCCCCEE
T ss_conf -874897143
No 128
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=42.96 E-value=12 Score=16.57 Aligned_cols=133 Identities=11% Similarity=0.044 Sum_probs=63.0
Q ss_pred CEEEEECC-CHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCC-CCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 30797016-189999999858857777505302055322421277-7688302210113663587863367666654685
Q gi|254780451|r 468 VKTSCAPG-SQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNS-GALKKEISEVIHQKSLVVAGVLSGNRNFEGRISP 545 (896)
Q Consensus 468 Vkt~l~PG-S~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGns-G~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p 545 (896)
+|..++.| ..++.+.|++.|+-..|.. |.++...-...|+.+- +.....+...+...+.....++ + ..|+++.-.
T Consensus 29 i~~VlVHGgg~qI~~~l~~~gi~~~~~~-G~RvTd~~~l~~v~~vl~~vn~~lv~~l~~~g~~a~~i~-g-~~~~a~~~~ 105 (248)
T cd04252 29 LYPIVVHGAGPQLNEELEAAGVEPEYVD-GLRVTDPETLAVARKVFLEENLKLVEALERNGARARPIT-S-GVFEAEYLD 105 (248)
T ss_pred CEEEEEECCCHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-C-CCEEEEECC
T ss_conf 9599991898788899998699853138-844689899999999999999999999996599738603-7-636888667
Q ss_pred CCCCEEECCHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 4331000597899999851612223--10023554888863200156888578888876415832
Q gi|254780451|r 546 DVEANYLLSPPLVVAYALAGNVRKN--LIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCD 608 (896)
Q Consensus 546 ~~~~~yLaSP~lVvA~AiaG~I~~d--~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~ 608 (896)
....-|..-+.-|=.-.|.-.++-+ +.--|||.+++|+.+-+ ..+++...+...++.+
T Consensus 106 ~~~~g~vG~v~~Vd~~~i~~lL~~g~Ipvispig~~~~G~~~Nv-----naD~~A~~iA~aL~A~ 165 (248)
T cd04252 106 KDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNV-----NADVAAGELARVLEPL 165 (248)
T ss_pred CCCCCCCCCEEEECHHHHHHHHHCCCCEEEEEEEECCCCCEEEE-----CHHHHHHHHHHHCCCC
T ss_conf 65678432258982999999985899448851478899998987-----9999999999975999
No 129
>PRK12862 malic enzyme; Reviewed
Probab=42.61 E-value=21 Score=14.81 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=15.0
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 00000357999999999999971999999
Q gi|254780451|r 91 MQDFTGVPAVVDLAAMRDAIVVLGGDPQN 119 (896)
Q Consensus 91 ~qD~Tg~pa~vdlaamR~~~~~~g~dp~~ 119 (896)
+||=---.|++-+|++..++.-.|.+-+.
T Consensus 164 ~hddqhgtaiv~~a~l~nal~~~~k~~~~ 192 (761)
T PRK12862 164 FHDDQHGTAIIVAAAVLNGLKVVGKDIED 192 (761)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 33776518999999999999984885667
No 130
>PRK13783 adenylosuccinate synthetase; Provisional
Probab=42.42 E-value=17 Score=15.46 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCHHHHHCCCC----CEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCC
Q ss_conf 2242127776883022101136----6358786336766665468543310005978999998516122231
Q gi|254780451|r 504 CTTCIGNSGALKKEISEVIHQK----SLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNL 571 (896)
Q Consensus 504 Cg~CiGnsG~l~~~i~~~i~~~----~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~ 571 (896)
-+|+.| +||+|.++.+.+.+. +-. ....+ -|- -| .-||--+++-=|..+.|--.+-+
T Consensus 259 Y~TRVG-~GPFPTEl~de~g~~lr~~G~E-~GttT-GRp--RR------~GWfD~v~lrya~~inG~t~lal 319 (404)
T PRK13783 259 YTTRVG-EGPFPTELFGEEGEKLRKLGHE-YGATT-GRP--RR------CGWLDLPLLRYAIETSGCTSLVM 319 (404)
T ss_pred CCCCCC-CCCCCCCCCCHHHHHHHHCCCC-CCCCC-CCC--CC------CCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 124205-8998743466077887650811-37778-997--20------43004899999998649987999
No 131
>cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4. This group consists of Eukaryotic TruB proteins similar to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4, makes psi55 in the T loop of both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).
Probab=42.41 E-value=21 Score=14.79 Aligned_cols=101 Identities=14% Similarity=0.216 Sum_probs=55.9
Q ss_pred CCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12777688302210113663587863367666654685433100059789999985161222310023554888863200
Q gi|254780451|r 508 IGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYL 587 (896)
Q Consensus 508 iGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~dplg~~~~G~~v~L 587 (896)
+|++|-|+|-.. ++..+++-.+.|-.+-= ....|. |. +++.+...||. .|..|+-+.-
T Consensus 58 vGH~GTLDP~At------GvL~i~~G~aTK~~~~~-~~~~K~-Y~------------a~~~lG~~TdT--~D~eG~v~~~ 115 (312)
T cd02867 58 IGHGGTLDPLAT------GVLVVGVGAGTKQLQDY-LSCSKT-YE------------ATGLFGASTTT--YDREGKILKK 115 (312)
T ss_pred EEECCCCCCCCC------CEEEEEECHHHEECHHH-CCCCCE-EE------------EEEEECCCCCC--CCCCCCEEEE
T ss_conf 402656787460------33889987544045866-679917-99------------99998840578--7777877750
Q ss_pred CCC-CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 156-8885788888764158321000122334787122015578776205674
Q gi|254780451|r 588 RDI-WPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDE 639 (896)
Q Consensus 588 ~Di-wPs~~Ei~~~~~~~v~~~~f~~~y~~i~~g~~~w~~l~~~~~~~y~w~~ 639 (896)
+++ .|+.++|.+++.+++.. +.+-++..-++.+..-.+|.+.-
T Consensus 116 ~~~~~~t~~~i~~~l~~F~G~---------i~Q~PP~ySA~Kv~GkrlYelAR 159 (312)
T cd02867 116 KPYSHITREDIEEVLAKFRGD---------IKQVPPLYSALKMDGKRLYEYAR 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHCCCC---------EEEECCHHHEEEECCEEHHHHHH
T ss_conf 578868899999999977886---------57648756834379988998986
No 132
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=42.20 E-value=21 Score=14.77 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=34.2
Q ss_pred CHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCC
Q ss_conf 85777750530205532242127776883022101136635878633676666546854331000597899999851612
Q gi|254780451|r 488 LVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 (896)
Q Consensus 488 ll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I 567 (896)
+++.+.-=||.. +++-|.|..|-... ..-|| ||||+.+-.... ----|++.+-....-.+
T Consensus 104 i~PsmNPDG~e~---~~~d~~~~~GR~Na------n~vDL--------NRnFPd~~~~~~---~~~qPET~Avm~w~~~~ 163 (376)
T cd03866 104 IMPSMNPDGFEA---SKPDCYYSVGRYNK------NGYDL--------NRNFPDAFEENN---EQRQPETRAVMEWLKSE 163 (376)
T ss_pred EEECCCCCCHHC---CCCCCCCCCCCCCC------CCCCC--------CCCCCCCCCCCC---CCCCCHHHHHHHHHHHC
T ss_conf 990538852202---46777651344645------37665--------778974545566---66782699999998738
Q ss_pred CCCCCC
Q ss_conf 223100
Q gi|254780451|r 568 RKNLIK 573 (896)
Q Consensus 568 ~~d~~~ 573 (896)
.|.+..
T Consensus 164 pFvLSa 169 (376)
T cd03866 164 TFVLSA 169 (376)
T ss_pred CCEEEE
T ss_conf 851788
No 133
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3, Yersinia-type; InterPro: IPR013395 The helicase encoded in many CRISPR-associated (cas) gene clusters is designated Cas3. The Yersinia-type helicase Cas3 proteins differ from the more common Cas3 proteins by being considerably larger, though they still share a number of motifs, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc..
Probab=41.55 E-value=2 Score=22.28 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=21.7
Q ss_pred EEHHHHHHHHHHCCCCEEEECC--CCCCCCCHHHHHHHHHHH
Q ss_conf 7379999989981998899946--777867307999886676
Q gi|254780451|r 754 LFIYDAAMRYKVDQVPLVVFAG--VEYGNGSSRDWAAKGTRL 793 (896)
Q Consensus 754 ~~iydaA~~Y~~~~~plVViAG--~~YG~GSSRdwAAkgp~l 793 (896)
..|-+.-..|.+.+.+-||+|- .|=|===-=|||--.|-=
T Consensus 849 ~ei~~~l~~~~~~~~lFivlatpV~EVGRDHDYdWAi~dpSS 890 (1153)
T TIGR02562 849 DEIEDLLQNSPAKNHLFIVLATPVEEVGRDHDYDWAIADPSS 890 (1153)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCEECCCCCCCCHHHHCHHH
T ss_conf 889988631600158648971671230677760144523245
No 134
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=41.37 E-value=21 Score=14.68 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHH
Q ss_conf 079998866761708999764789888505355232233178989888
Q gi|254780451|r 783 SRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 (896)
Q Consensus 783 SRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~ 830 (896)
..-|+.+.-.|-+|++|++.+.-.--+.-|+..||-|++-..++..+.
T Consensus 53 ~~~~~~~~~~L~DC~~v~~~~IG~~a~~~L~~~GI~~~~~~~~~~Ie~ 100 (106)
T cd00852 53 EDRLDAIIKLLSDCDAVLCAKIGDEPKEKLEEAGIEVIEAYAGEYIEE 100 (106)
T ss_pred HHHHHHHHHHHCCCCEEEEHHCCCCHHHHHHHCCCEEEECCCCCCHHH
T ss_conf 879999999875995999832096389999986998998079875999
No 135
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=41.05 E-value=12 Score=16.56 Aligned_cols=142 Identities=18% Similarity=0.155 Sum_probs=64.7
Q ss_pred CCCCCEEEECCCHHHHHHHH--HCCCCHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCEEEEEECCCCC--CHHCCCCCCC
Q ss_conf 03720377519989999998--639998899999987464102-367676678863069999803143--0122656656
Q gi|254780451|r 312 EYGATCGFFPVDRGTIDYLR--LSGRSNSRVDLVEAYTKVQGM-WREDIDYEKVAFTKKMKLDLGNVS--PSVAGPRRPE 386 (896)
Q Consensus 312 E~GAt~gifp~De~T~~YL~--~tGR~~~~v~lve~Y~ka~~l-~~~~~~d~~a~Y~~vieiDLs~ie--P~VAgP~~P~ 386 (896)
.+|-..=+|=.||. |=+. ..-|.+-..+|.|=--..|+- |.|. |- -+.||||+|= =..+. +-=
T Consensus 513 ~~~t~NPl~LlDEI--DK~~~~~~~~GDPaSALLEvLDPEQN~~F~DH-------Yl-dvp~DLS~V~CyFi~TA--N~~ 580 (941)
T TIGR00763 513 KAKTKNPLILLDEI--DKIGLKSSFRGDPASALLEVLDPEQNNAFSDH-------YL-DVPFDLSKVLCYFIATA--NSI 580 (941)
T ss_pred HCCCCCCEEEEEEE--EEECCCCCCCCCHHHHHHHHCCHHHCCCCCCC-------CC-CCCCCHHHHHHHEEECC--CCC
T ss_conf 60415880686202--20016788655637888641286436042553-------00-23400420021000244--757
Q ss_pred CEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCCCC
Q ss_conf 4136777301166876640011002321024578888875554457531046765459998778899988986-498758
Q gi|254780451|r 387 SRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVR-AGLKSK 465 (896)
Q Consensus 387 d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~-~Glkv~ 465 (896)
|.|| ..|-|-.=+|- |++=| .+.-+-||=.-|-.|+.+ .||+..
T Consensus 581 d~IP--------------------------------~PLLDRMEvI~-lsGY~--~~EK~~IA~~yLiP~~~~~~GL~~~ 625 (941)
T TIGR00763 581 DTIP--------------------------------RPLLDRMEVIE-LSGYT--EEEKLEIAKKYLIPKALEDHGLKPD 625 (941)
T ss_pred CCCC--------------------------------CCCCCCEEEEE-CCCCC--HHHHHHHHHHCCHHHHHHHHCCCCC
T ss_conf 6777--------------------------------22137402452-38887--6789999985471367987088813
Q ss_pred CCCEEEEECCCHHHHHHHHHCC-------CHHHHHHHCCEECC
Q ss_conf 6730797016189999999858-------85777750530205
Q gi|254780451|r 466 PWVKTSCAPGSQVSYEYLVQAG-------LVEYLEALGFSLVG 501 (896)
Q Consensus 466 p~Vkt~l~PGS~~V~~~L~~~G-------ll~~L~~aGf~i~~ 501 (896)
.|+.+=.==...++.|.+++| +-+++.++=..++.
T Consensus 626 -~l~~~d~al~~lI~~YtREaGVRNL~r~I~~i~RK~A~~~~~ 667 (941)
T TIGR00763 626 -ELKISDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVE 667 (941)
T ss_pred -CEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf -221268999999987513202133899999999999999987
No 136
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=40.90 E-value=18 Score=15.16 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCEEECCHHHHHHHHHHCCCC
Q ss_conf 6665468543310005978999998516122
Q gi|254780451|r 538 NFEGRISPDVEANYLLSPPLVVAYALAGNVR 568 (896)
Q Consensus 538 NFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~ 568 (896)
|-..-+||-.=| +||=.+=||-+.+|.|+
T Consensus 135 ni~~~~NP~lLA--iA~GytFVARgfs~d~~ 163 (302)
T TIGR02177 135 NIQDPVNPLLLA--IAAGYTFVARGFSGDVA 163 (302)
T ss_pred CCCCCCCHHHHH--HHCCCCHHHHHHHHHHH
T ss_conf 776541389999--98085274588887489
No 137
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=40.85 E-value=22 Score=14.62 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=3.9
Q ss_pred CE-EEECCCCC
Q ss_conf 80-78608876
Q gi|254780451|r 172 NF-RVVPPGTG 181 (896)
Q Consensus 172 ~~-~v~pPG~G 181 (896)
|+ .|+=-|.|
T Consensus 53 G~P~ViIAgAG 63 (159)
T TIGR01162 53 GIPKVIIAGAG 63 (159)
T ss_pred CCCEEEEECCC
T ss_conf 89979984035
No 138
>PRK12928 lipoyl synthase; Provisional
Probab=40.73 E-value=22 Score=14.61 Aligned_cols=78 Identities=22% Similarity=0.322 Sum_probs=36.4
Q ss_pred CCCCCCCCCEEEEECCC--HHHHHHHHHCCCHHHHHHH--------------CCEECCC----CCCCCC---CCCCCCC-
Q ss_conf 49875867307970161--8999999985885777750--------------5302055----322421---2777688-
Q gi|254780451|r 460 AGLKSKPWVKTSCAPGS--QVSYEYLVQAGLVEYLEAL--------------GFSLVGF----GCTTCI---GNSGALK- 515 (896)
Q Consensus 460 ~Glkv~p~Vkt~l~PGS--~~V~~~L~~~Gll~~L~~a--------------Gf~i~~~----GCg~Ci---GnsG~l~- 515 (896)
.-+|-++|.|..+--|+ ..++..+++.+|-..-++| -|.|+|. +|.-|- |.-.|++
T Consensus 10 p~~rkP~Wlkvk~p~~~~~~~~~~~l~~~~L~TVCeeA~CPNi~ECw~~gTATFMIlGd~CTR~C~FC~V~tg~P~~lD~ 89 (290)
T PRK12928 10 PILRLPEWLRAPIGKASELETVQRLVKQRRLHTICEEARCPNRGECYAQGTATFLLMGSICTRRCAFCQVAKGRPMPLDP 89 (290)
T ss_pred CCCCCCHHEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 87789643286389983499999999977992556788899748866998428996678635489851553799898980
Q ss_pred ---CHHHHHCCCCCEEEEEEECCCC
Q ss_conf ---3022101136635878633676
Q gi|254780451|r 516 ---KEISEVIHQKSLVVAGVLSGNR 537 (896)
Q Consensus 516 ---~~i~~~i~~~~l~~~sV~SgNR 537 (896)
..+.+++..-+|.-+-+.|=||
T Consensus 90 ~EP~rvA~av~~m~LkyvVITSV~R 114 (290)
T PRK12928 90 DEPERVAEAVAALGLRYVVLTSVAR 114 (290)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 3479999999983897689841236
No 139
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=40.58 E-value=22 Score=14.60 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=14.3
Q ss_pred HHCCCCEEEECCCCCCCCCHHHHH
Q ss_conf 981998899946777867307999
Q gi|254780451|r 764 KVDQVPLVVFAGVEYGNGSSRDWA 787 (896)
Q Consensus 764 ~~~~~plVViAG~~YG~GSSRdwA 787 (896)
.+.+.|.++|=-.|-+-|.-|.|-
T Consensus 455 ~r~~lpi~ivV~NN~~~g~i~~~q 478 (562)
T PRK06048 455 VQNDIPVVSVILNNGYLGMVRQWQ 478 (562)
T ss_pred HHHCCCEEEEEEECCCCHHHHHHH
T ss_conf 997879299999688408999999
No 140
>PRK07115 AMP nucleosidase; Provisional
Probab=40.05 E-value=8.7 Score=17.52 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=6.7
Q ss_pred EEECCCCCCCCHHHHHH
Q ss_conf 99767786443688999
Q gi|254780451|r 256 EVTGSLQEGVTATDLVL 272 (896)
Q Consensus 256 ~L~G~L~~gVtakDiiL 272 (896)
=-.|-|++.+-.-|+||
T Consensus 93 GtcGgL~~~~~iGD~Vi 109 (258)
T PRK07115 93 GKCGGLKSHNQIGDYFL 109 (258)
T ss_pred CCCCCCCCCCCCCCEEE
T ss_conf 35235777774798898
No 141
>KOG1333 consensus
Probab=39.63 E-value=15 Score=15.80 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHCCCC
Q ss_conf 998999999863999
Q gi|254780451|r 322 VDRGTIDYLRLSGRS 336 (896)
Q Consensus 322 ~De~T~~YL~~tGR~ 336 (896)
.|+...+||-..|-.
T Consensus 8 tDelvReYL~frgf~ 22 (241)
T KOG1333 8 TDELVREYLLFRGFT 22 (241)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 899999999997589
No 142
>KOG2629 consensus
Probab=39.59 E-value=22 Score=14.57 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHCCCCHHHHHH
Q ss_conf 1998999999863999889999
Q gi|254780451|r 321 PVDRGTIDYLRLSGRSNSRVDL 342 (896)
Q Consensus 321 p~De~T~~YL~~tGR~~~~v~l 342 (896)
.|+.+-+.||+..|-+++.|..
T Consensus 20 aPli~kr~FLksKGLT~eEI~e 41 (300)
T KOG2629 20 APLIKKREFLKSKGLTEEEIQE 41 (300)
T ss_pred CHHHHHHHHHHHCCCCHHHHHH
T ss_conf 6079999999855988999999
No 143
>CHL00176 ftsH cell division protein; Validated
Probab=39.22 E-value=23 Score=14.45 Aligned_cols=55 Identities=27% Similarity=0.455 Sum_probs=35.0
Q ss_pred HHCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHCCCEEEE
Q ss_conf 100599889998999-88754267899998774214880786-0887621677898633511310
Q gi|254780451|r 136 VDYSGNKDAVTRNKD-LEYQRNEERYRFLKWGQKSFKNFRVV-PPGTGICHQINLEYLGQSVWTK 198 (896)
Q Consensus 136 vd~~g~~~a~~~n~~-~e~~rN~Ery~Flkwa~~~f~~~~v~-pPG~GI~HQvnlE~la~vv~~~ 198 (896)
-|..|..+|-+.=.+ .+|=+|-|+|. +-+.+--+++-.+ |||+|=-. ||+-|--+
T Consensus 177 ~DVaG~~eaK~el~EivdfLk~P~k~~--~~Gak~PkGvLL~GpPGTGKTl------LAkAvAgE 233 (631)
T CHL00176 177 NDVAGVEEAKEELEEVVTFLKKPERFT--AVGAKIPKGVLLVGPPGTGKTL------LAKAIAGE 233 (631)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCHHHHH--HCCCCCCCEEEEECCCCCCHHH------HHHHHHCC
T ss_conf 322885899999999999835958876--4499689658988989987889------99998565
No 144
>PRK13787 adenylosuccinate synthetase; Provisional
Probab=39.10 E-value=20 Score=14.85 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCCCHHHHH----CCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCCCC
Q ss_conf 224212777688302210----1136635878633676666546854331000597899999851612223100
Q gi|254780451|r 504 CTTCIGNSGALKKEISEV----IHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIK 573 (896)
Q Consensus 504 Cg~CiGnsG~l~~~i~~~----i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG~I~~d~~~ 573 (896)
-+|+.| +||.|.++.+. +++.+-- ....+| |- -| .-||=-+.+=-|-.+.|--.+-+++
T Consensus 269 Y~TRVG-~GPFPTEl~~~~~~~lre~G~E-~GttTG-Rp--RR------~GWlDlv~lrya~~ing~~~l~lTK 331 (423)
T PRK13787 269 YTTRVG-EGPFPTELLGEAGEVLRQKGGE-FGATTG-RP--RR------CGWFDVEMLKHSVRINGITSIALTK 331 (423)
T ss_pred CCCCCC-CCCCCCCCCCHHHHHHHHCCCE-ECCCCC-CC--CC------CCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 003315-8899853354245667523857-787348-87--14------6631467754513224898799970
No 145
>PRK11404 putative PTS transporter components IIBC; Provisional
Probab=39.05 E-value=23 Score=14.43 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=18.6
Q ss_pred CCCHHHHHHHC---CEECC--CCCCCCCCCCCCCCCH
Q ss_conf 58857777505---30205--5322421277768830
Q gi|254780451|r 486 AGLVEYLEALG---FSLVG--FGCTTCIGNSGALKKE 517 (896)
Q Consensus 486 ~Gll~~L~~aG---f~i~~--~GCg~CiGnsG~l~~~ 517 (896)
.+|...|..++ ..+++ -||++|+-+.||..+.
T Consensus 289 ~~L~~~L~~m~~~~~ilLG~ilG~MmafDmGGPiNKa 325 (482)
T PRK11404 289 GGLLHFLNTIPPSMKFAAAFLVGAMLAFDMGGPINKT 325 (482)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9999999871120089999999988863258841789
No 146
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase; InterPro: IPR006323 These sequences represent an enzyme that catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases, and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base . The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilised by microorganisms as a chemical warfare agent..
Probab=38.95 E-value=23 Score=14.42 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=47.5
Q ss_pred CCCCCCCCCC--CCCCEEEEEECCCCCCHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 2367676678--86306999980314301226566564136777301166876640011002321024578888875554
Q gi|254780451|r 352 MWREDIDYEK--VAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGD 429 (896)
Q Consensus 352 l~~~~~~d~~--a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 429 (896)
.|+.+..+.| +-|.+-.+|-...|.-+-| |+..+++. ...+. +.. |+
T Consensus 67 vFgrlp~~~Di~aiYe~F~pl~ia~~a~haa---------pIp~~lev-ia~lR----------------~rG--iK--- 115 (199)
T TIGR01422 67 VFGRLPTEADIQAIYEEFMPLQIAKVAEHAA---------PIPAVLEV-IAELR----------------ERG--IK--- 115 (199)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC---------CCHHHHHH-HHHHH----------------HCC--CE---
T ss_conf 7089997745899998616899998655405---------55368999-99997----------------388--44---
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC-CCHHH
Q ss_conf 457531046765459998778899988986498758673079701-61899
Q gi|254780451|r 430 VAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAP-GSQVS 479 (896)
Q Consensus 430 VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~P-GS~~V 479 (896)
||||| .+|..|+ -.|++.|...|-|.---|-|-=+| +-|--
T Consensus 116 -----IGScs--GYpr~vM--d~v~~~Aa~~GY~pD~vVatDdvpq~GRP~ 157 (199)
T TIGR01422 116 -----IGSCS--GYPREVM--DIVVAEAALQGYKPDFVVATDDVPQAGRPY 157 (199)
T ss_pred -----EECCC--CCHHHHH--HHHHHHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf -----42479--8757899--999999974789766424662246788974
No 147
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=38.72 E-value=23 Score=14.40 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHCC----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 119999998874048----6657999999986123554577766364532522000003579999999999999719999
Q gi|254780451|r 42 CSMKVLLENLLRFED----GCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDP 117 (896)
Q Consensus 42 ~s~rillEn~~R~~~----~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp 117 (896)
.++|=||.-+..+-- =....-+.+++++.=-+..+.+ .=|.+.|.-+ .++|... +++|-.++++.
T Consensus 4 v~~k~lL~~A~~~~yAV~AfNv~~~e~~~Avi~AAee~~sP-vIlq~~~~~~---~~~g~~~---~~~~~~~~a~~---- 72 (284)
T PRK09195 4 VSTRQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSP-VIIAGTPGTF---SYAGTEY---LLAIVSAAAKQ---- 72 (284)
T ss_pred CCHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCC-EEEECCHHHH---HHCCHHH---HHHHHHHHHHH----
T ss_conf 66899999999879079987778899999999999995999-8999885166---4479899---99999999987----
Q ss_pred HHCCCCCCEEEEEECCC
Q ss_conf 99287898139986832
Q gi|254780451|r 118 QNINPLVPVDLVIDHSL 134 (896)
Q Consensus 118 ~~inp~vp~dlviDHsv 134 (896)
-.|||-||.||.-
T Consensus 73 ----~~VPV~lHLDH~~ 85 (284)
T PRK09195 73 ----YHHPLALHLDHHE 85 (284)
T ss_pred ----CCCCEEEECCCCC
T ss_conf ----7998899669879
No 148
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=37.94 E-value=24 Score=14.31 Aligned_cols=41 Identities=29% Similarity=0.173 Sum_probs=26.8
Q ss_pred EEEECC--CHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCC
Q ss_conf 797016--189999999858857777505302055322421277
Q gi|254780451|r 470 TSCAPG--SQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNS 511 (896)
Q Consensus 470 t~l~PG--S~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGns 511 (896)
..+-|| |......|++.||.+.+.+.-.. .-|==|.|+||.
T Consensus 41 ~lILPGG~s~am~~ll~~~gl~~~i~~~i~~-gkP~LGIClGmq 83 (191)
T PRK13525 41 GLILPGGESTTMGKLLRDFGLLEPLREFIAS-GLPVFGTCAGMI 83 (191)
T ss_pred EEEECCCCHHHHHHHHHHCCCHHHHHHHHHC-CCCEEEECHHHH
T ss_conf 8997897658999999986868999999984-998576222121
No 149
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=37.89 E-value=24 Score=14.31 Aligned_cols=76 Identities=24% Similarity=0.411 Sum_probs=41.2
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCEEEEEECCCCCHH------HCCCCCCC
Q ss_conf 122015578776205674333423788767765455--------4332435855899965885723------31645655
Q gi|254780451|r 622 SSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHI--------PEIVDICGARILCLLGDKITTD------HISPAGSI 687 (896)
Q Consensus 622 ~~w~~l~~~~~~~y~w~~~StyI~~pPff~~~~~~~--------~~~~~i~~arvL~~lGD~iTTD------HISPAG~I 687 (896)
..+..++..+|.-..| .+| .+||.+..+... +-....+.+ ..+..||.|||| |++||
T Consensus 298 ~~~e~~~~~kG~~Le~---l~Y--~hpl~~~~~~~~~m~~~~L~~~~~~~e~~-~~v~~gdhVT~~~GTG~VHtAPg--- 368 (938)
T TIGR00392 298 TDYEIIKTFKGSDLEG---LEY--EHPLYDKVSQLKGMVVEELIERVDEKEGA-PVVIGGDHVTTEDGTGIVHTAPG--- 368 (938)
T ss_pred CCEEEEEEECCCCCCC---CEE--ECCCCCCCCCCCCCCHHHHHHHHCCCCCC-EEEEECCEEECCCCCEEEECCCC---
T ss_conf 1107865551644165---246--52665322011563252322310689864-48984004546889722687889---
Q ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHCCCH-HHHH
Q ss_conf 544737888987498865631456530235-7776
Q gi|254780451|r 688 PLQSAAASYLRQRGVKEKDFNQFGTRRGNH-EVMM 721 (896)
Q Consensus 688 ~~~spAg~yL~~~Gv~~~dfNsygsRRgNh-evM~ 721 (896)
|-+.||- -|-+-|.- |||+
T Consensus 369 --------------hG~eDy~-~g~kygl~~e~~~ 388 (938)
T TIGR00392 369 --------------HGEEDYE-IGKKYGLPDEVLS 388 (938)
T ss_pred --------------CCHHHHH-HHHHHCCCCCCCC
T ss_conf --------------8732899-9998289864314
No 150
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family; InterPro: IPR011911 Glutaredoxins , , , also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system . Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond . It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon . Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system..
Probab=37.53 E-value=21 Score=14.78 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=28.7
Q ss_pred CHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHH-HCCCCE
Q ss_conf 3788898749886563145653023577766520360122321257776577224538997873799999899-819988
Q gi|254780451|r 692 AAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYK-VDQVPL 770 (896)
Q Consensus 692 pAg~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~-~~~~pl 770 (896)
.|=+||+++||.-.++|-= .|.+-+|.| -.+|. ++++|.
T Consensus 15 ~aK~yL~~~gv~f~~~dV~---------------~d~~A~~~~-------------------------~k~~gG~~gVPv 54 (79)
T TIGR02196 15 KAKEYLTSKGVAFEEIDVE---------------KDSAAREEL-------------------------LKKLGGQRGVPV 54 (79)
T ss_pred HHHHHHHHCCCCEEEECCC---------------CCHHHHHHH-------------------------HHHHCCCCCCCE
T ss_conf 9999999549945763433---------------697889999-------------------------998389854555
Q ss_pred EE---ECCCC
Q ss_conf 99---94677
Q gi|254780451|r 771 VV---FAGVE 777 (896)
Q Consensus 771 VV---iAG~~ 777 (896)
|| |+++.
T Consensus 55 ~vsGdi~~~~ 64 (79)
T TIGR02196 55 IVSGDIGTHK 64 (79)
T ss_pred EEECCCCCCE
T ss_conf 7634237972
No 151
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=36.54 E-value=11 Score=16.92 Aligned_cols=44 Identities=32% Similarity=0.410 Sum_probs=24.7
Q ss_pred EEEEECCCCCHHHCCCCCCCCCCCC-HHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 8999658857233164565554473-788898749886563145653023577766520360
Q gi|254780451|r 668 ILCLLGDKITTDHISPAGSIPLQSA-AASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNI 728 (896)
Q Consensus 668 vL~~lGD~iTTDHISPAG~I~~~sp-Ag~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaNi 728 (896)
.|..+||-|.-= ++|. .-.+|... .+-+=|||||-|+-..|...
T Consensus 45 ~Lv~lGDlIDRG---------pdS~~Vl~ll~~~--------~~~~v~GNHE~mll~~l~~~ 89 (218)
T PRK09968 45 LLISVGDNIDRG---------PESLNVLRLLNQP--------WFISVKGNHEAMALDAFETG 89 (218)
T ss_pred EEEEECCEECCC---------CCCHHHHHHHHCC--------CCEEECCHHHHHHHHHHHCC
T ss_conf 899806642578---------8829999998447--------98797274799999988658
No 152
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=36.42 E-value=25 Score=14.15 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.6
Q ss_pred HHHHHHHCCCCEEEECCC
Q ss_conf 999899819988999467
Q gi|254780451|r 759 AAMRYKVDQVPLVVFAGV 776 (896)
Q Consensus 759 aA~~Y~~~~~plVViAG~ 776 (896)
.+++|+=+|+|.+||-||
T Consensus 159 ~~~~~~I~gVPt~iVNGK 176 (207)
T PRK10954 159 AAADLQLRGVPAMFVNGK 176 (207)
T ss_pred HHHHCCCCCCCEEEECCE
T ss_conf 999728887886999899
No 153
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=36.36 E-value=25 Score=14.14 Aligned_cols=49 Identities=31% Similarity=0.377 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHC----CCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCE
Q ss_conf 64436889999999841----02212127999615500178756321200010037203
Q gi|254780451|r 263 EGVTATDLVLTITQMLR----KEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATC 317 (896)
Q Consensus 263 ~gVtakDiiL~i~~~Lr----~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~ 317 (896)
.|+.=|||.|.|...|+ ..| .-|=++=+.=..+++.+|+.|+| +.+|..
T Consensus 76 ~G~~EKdi~L~IA~~L~~~L~~~G---~~VvmTR~~D~~v~L~~R~~iAn---~~~ADl 128 (289)
T PRK10319 76 NGSKEKHVVLAIAKNVRSILRNHG---IDARLTRSGDTFIPLYDRVEIAH---KHGADL 128 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCC---CEEEEECCCCCCCCHHHHHHHHH---HCCCCE
T ss_conf 997379999999999999998689---97999468988689999999999---708999
No 154
>KOG3210 consensus
Probab=36.26 E-value=25 Score=14.13 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=27.3
Q ss_pred EEEEECC--CHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCC
Q ss_conf 0797016--18999999985885777750530205532242127
Q gi|254780451|r 469 KTSCAPG--SQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGN 510 (896)
Q Consensus 469 kt~l~PG--S~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGn 510 (896)
...+.|| |......+++.||-+.|...=-+---+--|+|-||
T Consensus 58 DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGm 101 (226)
T KOG3210 58 DALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGM 101 (226)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHH
T ss_conf 77783398502678887441017779998448886403410225
No 155
>PRK06066 acetyl-CoA acetyltransferase; Provisional
Probab=36.23 E-value=26 Score=14.13 Aligned_cols=64 Identities=16% Similarity=0.216 Sum_probs=37.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHCCCCCCCCEEEHHH
Q ss_conf 999999863999889999998746410236767667886306999980314301226566564136777
Q gi|254780451|r 325 GTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSE 393 (896)
Q Consensus 325 ~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ieP~VAgP~~P~d~v~l~~ 393 (896)
...+|++..|-+.|+...|-.-.+.+.. ..|.|.|-+.+.+|-=-=.|+|+.|-+=-|--+.+|
T Consensus 147 ~A~rym~~yG~t~E~lA~vavk~r~~A~-----~NP~A~~~~~~t~edvl~s~~ia~PL~~~dc~~~sD 210 (375)
T PRK06066 147 EAVKFMARRGVTREDLALVVEKNKKAGL-----KNPRASYASNVSLDDVLSSEYVVYPLTELDIAPFVD 210 (375)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-----HCCHHHCCCCCCHHHHCCCCCEECCCCCCCCCCCCC
T ss_conf 9999998869799999999999999885-----398403069999999807976505753002266768
No 156
>cd07968 OBF_DNA_ligase_IV The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase IV is a DNA-binding module that is part of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase IV is required for DNA non-homologous end joining pathways, including recombination of the V(D)J immunoglobulin gene segments in cells of the mammalian immune system. DNA ligase IV is stabilized by forming a complex with XRCC4, a nuclear phosphoprotein, which is phosphorylated by DNA-dependent pro
Probab=36.15 E-value=10 Score=17.07 Aligned_cols=11 Identities=18% Similarity=0.283 Sum_probs=5.0
Q ss_pred EEEEECCCCCH
Q ss_conf 89996588572
Q gi|254780451|r 668 ILCLLGDKITT 678 (896)
Q Consensus 668 vL~~lGD~iTT 678 (896)
||-+.++.||.
T Consensus 100 V~EV~~~ei~~ 110 (140)
T cd07968 100 VLEVKAAEIVP 110 (140)
T ss_pred EEEEEEEEEEE
T ss_conf 99999605777
No 157
>KOG1434 consensus
Probab=35.87 E-value=26 Score=14.09 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=11.8
Q ss_pred CCCCEEEHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 89978737999998998199889994677
Q gi|254780451|r 749 PSKEELFIYDAAMRYKVDQVPLVVFAGVE 777 (896)
Q Consensus 749 p~~~~~~iydaA~~Y~~~~~plVViAG~~ 777 (896)
.+++..+=++++|.+.... +.-++|+-
T Consensus 261 ltNQvttdpga~~~f~s~~--~kp~gGh~ 287 (335)
T KOG1434 261 LTNQVTTDPGAGMTFASQD--LKPAGGHS 287 (335)
T ss_pred EECCEECCCCCCCCCCCCC--CCCCCCCH
T ss_conf 8411114876332223344--47544413
No 158
>TIGR00511 aIF-2BII_fam translation initiation factor, putative, aIF-2BII family; InterPro: IPR005250 The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. So far, members of this family are found only in the euryarchaeota..
Probab=35.85 E-value=26 Score=14.09 Aligned_cols=34 Identities=26% Similarity=0.409 Sum_probs=26.0
Q ss_pred CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 88875554457531046765459998778899988986498758
Q gi|254780451|r 422 DFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSK 465 (896)
Q Consensus 422 ~~~l~~g~VvIAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~ 465 (896)
.-.++||+-+ .|-|- |+ ||=.+-|+|.+.|++++
T Consensus 111 ~~RIKDG~T~---lTHCN-S~------AA~SVIK~A~~~GK~~~ 144 (303)
T TIGR00511 111 EKRIKDGDTV---LTHCN-SE------AALSVIKKAYDEGKDVK 144 (303)
T ss_pred CCCCCCCCEE---EEECC-HH------HHHHHHHHHHHCCCEEE
T ss_conf 1212478715---53005-06------79999987753687489
No 159
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=35.30 E-value=19 Score=15.03 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=30.0
Q ss_pred HHHHHHHCCCHH-HHHHHCCEECCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 999999858857-777505302055322421277768830221011
Q gi|254780451|r 479 SYEYLVQAGLVE-YLEALGFSLVGFGCTTCIGNSGALKKEISEVIH 523 (896)
Q Consensus 479 V~~~L~~~Gll~-~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i~ 523 (896)
+...+++.|+.- .-.++|++-++||--||+|- ||.+.+.-+.|.
T Consensus 65 l~~~a~~~~l~~~~V~DAG~Tev~pgt~Tvlai-gP~~~~~id~it 109 (115)
T cd02430 65 LKKKAKSLGLPTSLIQDAGRTQIAPGTITVLGI-GPAPEELIDKVT 109 (115)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEE-CCCCHHHHHHHH
T ss_conf 999999879978999879874028999789998-678888988864
No 160
>KOG3084 consensus
Probab=35.23 E-value=9.2 Score=17.35 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=11.1
Q ss_pred CCEEEEEEECCCCCC
Q ss_conf 544575310467654
Q gi|254780451|r 428 GDVAIASITSCTNTF 442 (896)
Q Consensus 428 g~VvIAaIgSCTNtS 442 (896)
-.+||..|++-+|+-
T Consensus 187 dPvVIm~li~~d~~~ 201 (345)
T KOG3084 187 DPVVIMLLIDHDGKH 201 (345)
T ss_pred CCEEEEEEECCCCCE
T ss_conf 986999997688877
No 161
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=35.22 E-value=26 Score=14.02 Aligned_cols=30 Identities=37% Similarity=0.647 Sum_probs=21.1
Q ss_pred HHHHHHCCCHH-HHHHHCCEECCC-CCCCCCC
Q ss_conf 99999858857-777505302055-3224212
Q gi|254780451|r 480 YEYLVQAGLVE-YLEALGFSLVGF-GCTTCIG 509 (896)
Q Consensus 480 ~~~L~~~Gll~-~L~~aGf~i~~~-GCg~CiG 509 (896)
.+.|.+.|.-+ .|.+-|+.+-++ ||--|-|
T Consensus 478 ~~~Ll~lGF~~edL~~Pg~~ly~pvGC~~C~~ 509 (577)
T TIGR02538 478 EEALLELGFTEEDLADPGLKLYGPVGCEECSN 509 (577)
T ss_pred HHHHHHCCCCHHHHCCCCCEECCCCCCCCCCC
T ss_conf 59998568886892699938617626100379
No 162
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=34.90 E-value=27 Score=13.98 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=17.0
Q ss_pred HHHHCCEEC-CCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCC
Q ss_conf 775053020-55322421277768830221011366358786336766665
Q gi|254780451|r 492 LEALGFSLV-GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEG 541 (896)
Q Consensus 492 L~~aGf~i~-~~GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeG 541 (896)
+.-=||... ..||+.|-+..|-... ..-|| ||||+-
T Consensus 105 mNPDG~e~a~~~~~~~~~~~~GR~Na------n~vDL--------NRNFPD 141 (395)
T cd03867 105 MNPDGYEAAASEGAGYNGWTNGRQNA------QNIDL--------NRNFPD 141 (395)
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCC------CCCCC--------CCCCCC
T ss_conf 28627775430377657665464657------68164--------357876
No 163
>KOG3512 consensus
Probab=34.75 E-value=3.5 Score=20.45 Aligned_cols=104 Identities=23% Similarity=0.265 Sum_probs=48.8
Q ss_pred ECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE
Q ss_conf 68321100599889998999887542678999987742148807860887621677898633511310368861798301
Q gi|254780451|r 131 DHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDT 210 (896)
Q Consensus 131 DHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pdt 210 (896)
+-|++-. ++.++....--.++|-|-=.-|+|...-...+.|.. |+-.-|--+--.|
T Consensus 140 ~Vsl~Fc-S~rPdsmaL~KS~D~GrTWqPfQFYss~C~~~fgr~--~~~a~isk~n~~E--------------------- 195 (592)
T KOG3512 140 YVSLTFC-SGRPDSMALEKSLDYGRTWQPFQFYSSDCRKAFGRS--PRRADISKSNEQE--------------------- 195 (592)
T ss_pred EEEEEEE-CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCCC---------------------
T ss_conf 9999972-599760233400135874455111377899985789--7656665677532---------------------
Q ss_pred EEECCCCCCCCCCC-HHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHH
Q ss_conf 32068876444520-123203434899999707751411672899999767786443688999
Q gi|254780451|r 211 CVGTDSHTTMINAL-GILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVL 272 (896)
Q Consensus 211 lVGtDSHT~~~gal-G~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL 272 (896)
.|+|+||+.+.+.- |-+++-. +-+.|--+ -+.-+-.|+.|||+|||-.
T Consensus 196 a~Ct~s~~~~~~~~~~~~af~~--------l~~Rps~~------dldss~vLqDwvTaTDiRv 244 (592)
T KOG3512 196 ALCTESYSDGAGSGGGKIAFFE--------LEDRPSAF------DLDSSPVLQDWVTATDIRV 244 (592)
T ss_pred EEECCCCCCCCCCCCCEEEEEE--------ECCCCCCC------CCCCCHHHHHHEEEEEEEE
T ss_conf 4651431257889885077643--------05785300------2455636552234012689
No 164
>PRK05481 lipoyl synthase; Provisional
Probab=34.06 E-value=27 Score=13.89 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=35.7
Q ss_pred CCCCCCEEEEE--CCCHHHHHHHHHCCCHHHHHHH--------------CCEECCC----CCCCCC---CCCCCCCC---
Q ss_conf 75867307970--1618999999985885777750--------------5302055----322421---27776883---
Q gi|254780451|r 463 KSKPWVKTSCA--PGSQVSYEYLVQAGLVEYLEAL--------------GFSLVGF----GCTTCI---GNSGALKK--- 516 (896)
Q Consensus 463 kv~p~Vkt~l~--PGS~~V~~~L~~~Gll~~L~~a--------------Gf~i~~~----GCg~Ci---GnsG~l~~--- 516 (896)
+-++|.|..+. +.-..++..+++.+|-..-++| -|.|+|. +|.-|- |+-.|+++
T Consensus 5 rkP~Wlkvk~p~~~~~~~~k~~l~~~~L~TVCeeA~CPNi~ECw~~gTATFMIlG~~CTR~C~FC~V~tG~P~~~D~~EP 84 (289)
T PRK05481 5 RKPDWLRVKLPTGERYTETKALLRENGLHTVCEEASCPNIGECWSHGTATFMILGDICTRRCPFCDVATGRPLPLDPDEP 84 (289)
T ss_pred CCCHHEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 79653176389984199999999977992555788999738875998506776578765788774078899898870307
Q ss_pred -HHHHHCCCCCEEEEEEECCCCC
Q ss_conf -0221011366358786336766
Q gi|254780451|r 517 -EISEVIHQKSLVVAGVLSGNRN 538 (896)
Q Consensus 517 -~i~~~i~~~~l~~~sV~SgNRN 538 (896)
.+.+++..-+|.-+-+.|=||-
T Consensus 85 ~~vA~av~~m~Lk~vViTSV~RD 107 (289)
T PRK05481 85 ERVAEAVARMGLKYVVITSVDRD 107 (289)
T ss_pred HHHHHHHHHHCCCEEEEEEECCC
T ss_conf 99999999828976999634166
No 165
>PRK08904 consensus
Probab=33.87 E-value=19 Score=15.11 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=16.1
Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9998898649875867307970161899999998
Q gi|254780451|r 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 452 llAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
-+++..++.|+++-.- |.=+|++..+-+.+.+
T Consensus 26 ~~a~al~~~Gi~~iEi--Tlrtp~a~~~i~~l~~ 57 (207)
T PRK08904 26 DLSRALVEGGIPTLEI--TLRTPVGLDAIRLIAK 57 (207)
T ss_pred HHHHHHHHCCCCEEEE--ECCCCHHHHHHHHHHH
T ss_conf 9999999879988999--5799139999999998
No 166
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain; InterPro: IPR012821 Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by IPR012822 from INTERPRO..
Probab=33.84 E-value=18 Score=15.19 Aligned_cols=60 Identities=23% Similarity=0.400 Sum_probs=37.0
Q ss_pred CCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHC-CCCHHHHHHHHHHCCCHHHHHHHHHCCCHH
Q ss_conf 855899965885723316456555447378889874-988656314565302357776652036012
Q gi|254780451|r 665 GARILCLLGDKITTDHISPAGSIPLQSAAASYLRQR-GVKEKDFNQFGTRRGNHEVMMRGTFSNIRI 730 (896)
Q Consensus 665 ~arvL~~lGD~iTTDHISPAG~I~~~spAg~yL~~~-Gv~~~dfNsygsRRgNhevM~RGtFaNirl 730 (896)
.+|+.+..|-.-. |-|-=+ -.+-|=+||.+| |.+...|=- .+-.||+|-||||.-.-+=+
T Consensus 144 ~~~~~ls~~~FLD---v~P~RA--S~~~A~Ryls~~wGlpLe~~Lv-ag~~g~De~ml~G~T~~VVv 204 (241)
T TIGR02471 144 AVKVILSLGAFLD---VLPLRA--SKGLALRYLSYRWGLPLEQLLV-AGDSGNDEEMLRGDTLGVVV 204 (241)
T ss_pred EEEEEEECCCCCC---EEECCC--CCHHHHHHHHHHHCCCHHHEEE-EECCCCCHHHHCCCCEEEEE
T ss_conf 4779860467454---342037--7048999999982797458145-40688854554277015885
No 167
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=33.76 E-value=28 Score=13.86 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 11999999887404866579999999861235545777663645325220000035799999999999997199999928
Q gi|254780451|r 42 CSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNIN 121 (896)
Q Consensus 42 ~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~in 121 (896)
-|||..||..|+..+-...+-++-..++.|+..+..+ + ...+=|.|-|.-|.-.|-++ .+..
T Consensus 8 ~siR~VL~~AL~~~g~~v~~f~~A~~~l~~l~~~p~p--D--~~~tD~rMPg~~Gl~LL~~i--------------k~~~ 69 (471)
T TIGR01818 8 RSIRWVLEKALSRAGIEVRTFDNAASVLRALAREPQP--D--LLITDVRMPGEDGLDLLKQI--------------KKRH 69 (471)
T ss_pred CHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCC--C--EEEEECCCCCHHHHHHHHHH--------------HHCC
T ss_conf 1899999999966695453113189999998447999--8--79861226882489999999--------------8508
Q ss_pred CCCCEEEEEECC
Q ss_conf 789813998683
Q gi|254780451|r 122 PLVPVDLVIDHS 133 (896)
Q Consensus 122 p~vp~dlviDHs 133 (896)
|.+||=+--=||
T Consensus 70 P~LPVIvM~A~~ 81 (471)
T TIGR01818 70 PKLPVIVMTAHS 81 (471)
T ss_pred CCCCEEEECCCH
T ss_conf 999779871306
No 168
>pfam09934 consensus
Probab=33.57 E-value=20 Score=14.83 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=8.3
Q ss_pred ECCHHHHHHHCCCCC
Q ss_conf 764789888505355
Q gi|254780451|r 801 AESFERIHRSNLIGM 815 (896)
Q Consensus 801 A~SFeRIHrsNLv~m 815 (896)
-+-|++|||||+-+.
T Consensus 73 ~~~~~~V~~sNmsKl 87 (116)
T pfam09934 73 DAVFEEVHRSNMSKL 87 (116)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999705844
No 169
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.38 E-value=28 Score=13.81 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=3.9
Q ss_pred HHHHHHHCCCC
Q ss_conf 99889864987
Q gi|254780451|r 453 LARNAVRAGLK 463 (896)
Q Consensus 453 lAkkAv~~Glk 463 (896)
||++-...|.+
T Consensus 159 LA~~l~~~g~~ 169 (340)
T COG0552 159 LAKYLKQQGKS 169 (340)
T ss_pred HHHHHHHCCCE
T ss_conf 99999978986
No 170
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.09 E-value=17 Score=15.46 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9998898649875867307970161899999998
Q gi|254780451|r 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 452 llAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
-+++..++.|+++-.- |.=+|++..+-+.+.+
T Consensus 29 ~~~~al~~gGi~~iEI--Tl~tp~a~~~i~~l~~ 60 (209)
T PRK06552 29 KISLAVIKGGIKAIEV--TYTNPFASEVIKELVE 60 (209)
T ss_pred HHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHH
T ss_conf 9999999879988999--6789759999999999
No 171
>KOG1389 consensus
Probab=32.96 E-value=24 Score=14.35 Aligned_cols=30 Identities=33% Similarity=0.290 Sum_probs=21.9
Q ss_pred ECCC--CCCCHHHHHHHHHHHHH--HHHCCCCCC
Q ss_conf 0467--65459998778899988--986498758
Q gi|254780451|r 436 TSCT--NTFNPSVMIGAGLLARN--AVRAGLKSK 465 (896)
Q Consensus 436 gSCT--NtSnp~~miaAgllAkk--Av~~Glkv~ 465 (896)
|+|| |+|--++=.+|-||+|+ |.++||-|-
T Consensus 269 GttTagNsSQvSDGa~aVLLmkRs~A~qlgLPvl 302 (435)
T KOG1389 269 GTTTAGNSSQVSDGAGAVLLMKRSVAMQLGLPVL 302 (435)
T ss_pred CCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 8203576311255535644436656765499546
No 172
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=32.44 E-value=19 Score=15.08 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=10.5
Q ss_pred CEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 2899999767786443688999999
Q gi|254780451|r 251 EVVGFEVTGSLQEGVTATDLVLTIT 275 (896)
Q Consensus 251 evigv~L~G~L~~gVtakDiiL~i~ 275 (896)
|-|..++||.+..=.+|..++-.++
T Consensus 104 ediNLHfTGD~hAItaA~NLlaA~i 128 (524)
T cd00477 104 EEINLHFTGDIHAITAANNLLAAAI 128 (524)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8814545670788888877999999
No 173
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=32.22 E-value=29 Score=13.75 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=10.3
Q ss_pred HHHHHHHHCCCEEEECCCCCEEEEEEEEEECC
Q ss_conf 67789863351131036886179830132068
Q gi|254780451|r 184 HQINLEYLGQSVWTKNENGENIAYPDTCVGTD 215 (896)
Q Consensus 184 HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtD 215 (896)
+|+|+|.+.. +-||.++...
T Consensus 108 ~~~NvE~Iia------------L~PDLVla~~ 127 (364)
T PRK09534 108 FQVNVEAVVG------------LDPDLVLAPN 127 (364)
T ss_pred CCCCHHHHHC------------CCCCEEEECC
T ss_conf 8879999961------------6998899658
No 174
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=31.99 E-value=30 Score=13.66 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHH----HHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 4436889999999----841022121279996155001787563212000
Q gi|254780451|r 264 GVTATDLVLTITQ----MLRKEGVVSKFVEFFGSGFESMVLADRATIANM 309 (896)
Q Consensus 264 gVtakDiiL~i~~----~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNM 309 (896)
|+.-||+.|.|.. .|.+. |.-|..+-+.-..+++.+|+.++|=
T Consensus 20 g~~E~~~~l~ia~~l~~~L~~~---g~~v~~tr~~d~~~~l~~R~~~an~ 66 (172)
T cd02696 20 GLKEKDINLAIALKLAKLLEAA---GAKVVLTRDDDTFVSLSERVAIANR 66 (172)
T ss_pred CCCHHHHHHHHHHHHHHHHHHC---CCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9638999999999999999977---9889995589854416899999996
No 175
>PRK08104 consensus
Probab=31.90 E-value=22 Score=14.62 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=17.9
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 89998898649875867307970161899999998
Q gi|254780451|r 451 GLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 451 gllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
--+++..++.|+++-.- |.=+|++..+-+.+.+
T Consensus 30 ~~la~al~~gGi~~iEi--Tlrt~~a~~~I~~l~~ 62 (212)
T PRK08104 30 VPLAKALVAGGVRVLEV--TLRTPCALEAIRAIAK 62 (212)
T ss_pred HHHHHHHHHCCCCEEEE--ECCCCHHHHHHHHHHH
T ss_conf 99999999879988999--6888149999999998
No 176
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=31.40 E-value=30 Score=13.59 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=23.7
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 104676545999877889998898649875
Q gi|254780451|r 435 ITSCTNTFNPSVMIGAGLLARNAVRAGLKS 464 (896)
Q Consensus 435 IgSCTNtSnp~~miaAgllAkkAv~~Glkv 464 (896)
=+||--++-+.-|+||.-+|++|.++|++.
T Consensus 62 k~~r~ksTPyAAq~AAe~aa~~a~e~Gi~~ 91 (150)
T PTZ00129 62 KADRDESSPYAAMMAAQDAAARAKELGITA 91 (150)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 578777887999999999999999819818
No 177
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase; InterPro: IPR004639 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamate-1-semialdehyde (GSA) aminotransferase (5.4.3.8 from EC), which catalyse a transamination reaction to produce 5-aminoaevulinic acid during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme has a high degree of similarity to amino acid transaminases, and is classed as a class III aminotransferase.; GO: 0042286 glutamate-1-semialdehyde 21-aminomutase activity, 0033014 tetrapyrrole biosynthetic process.
Probab=31.15 E-value=26 Score=14.12 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=4.8
Q ss_pred CHHHCCCCCC
Q ss_conf 7233164565
Q gi|254780451|r 677 TTDHISPAGS 686 (896)
Q Consensus 677 TTDHISPAG~ 686 (896)
==||+||.|.
T Consensus 285 iM~~laP~G~ 294 (434)
T TIGR00713 285 IMERLAPEGP 294 (434)
T ss_pred HHHHHCCCCC
T ss_conf 8843178877
No 178
>PRK04940 hypothetical protein; Provisional
Probab=31.12 E-value=31 Score=13.56 Aligned_cols=14 Identities=43% Similarity=0.738 Sum_probs=5.0
Q ss_pred HHHHHHHHCCEEEE
Q ss_conf 99886676170899
Q gi|254780451|r 786 WAAKGTRLLGVRSV 799 (896)
Q Consensus 786 wAAkgp~lLGVkAV 799 (896)
||..--.+.|+|||
T Consensus 73 yA~~l~~~~~~KaV 86 (179)
T PRK04940 73 WAERIGFLCGIRQV 86 (179)
T ss_pred HHHHHHHHCCCCEE
T ss_conf 99999998298679
No 179
>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component; InterPro: IPR004716 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria. The system in Escherichia coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm.
Probab=31.04 E-value=31 Score=13.55 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=26.6
Q ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEEC--HHHCCCCC
Q ss_conf 98885053552322331789898881989743899726--32258997
Q gi|254780451|r 806 RIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRK--LKTISPRQ 851 (896)
Q Consensus 806 RIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~--~~~l~p~~ 851 (896)
-.-|.||+..|=+-+.| ||.+-- .+.|+ +.+.+ +..|+||.
T Consensus 78 ~VAe~NLr~LGHiTvrF-dG~~~a--efpGt--vhV~g~~~~~i~~Gs 120 (129)
T TIGR00849 78 DVAEKNLRELGHITVRF-DGSNEA--EFPGT--VHVEGKEPDKIKPGS 120 (129)
T ss_pred HHHHHCCHHCCEEEEEE-CCCCCC--CCCCE--EEECCCCCCCCCCCC
T ss_conf 47753214248078887-688888--78710--684698888415784
No 180
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.04 E-value=22 Score=14.62 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=16.6
Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9998898649875867307970161899999998
Q gi|254780451|r 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 452 llAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
-+++..++.|+++-.- |.=+|++..+-+.+.+
T Consensus 31 ~~~~al~~gGi~~iEI--Tlrt~~a~~~I~~l~~ 62 (212)
T PRK06015 31 PLARALARGGLPAIEI--TLRTPAALDAIRAVAA 62 (212)
T ss_pred HHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHH
T ss_conf 9999999879988999--6899519999999998
No 181
>pfam01981 PTH2 Peptidyl-tRNA hydrolase PTH2. Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.
Probab=30.85 E-value=28 Score=13.85 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=31.7
Q ss_pred ECCCHHH---HHHHHHCCCHHH-HHHHCCEECCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 0161899---999998588577-7750530205532242127776883022101
Q gi|254780451|r 473 APGSQVS---YEYLVQAGLVEY-LEALGFSLVGFGCTTCIGNSGALKKEISEVI 522 (896)
Q Consensus 473 ~PGS~~V---~~~L~~~Gll~~-L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i 522 (896)
+|..+.. ...+++.|+.-+ -.++|++-+.+|--||+|- ||.+.+.-+.|
T Consensus 57 v~de~~L~~l~~~a~~~gl~~~~V~DAG~Tei~pgt~Tvlai-GP~~~~~id~i 109 (116)
T pfam01981 57 VNSEEELLELKEKAKSLGLPTSLIQDAGRTQIAPGTVTVLGI-GPAPKELVDKI 109 (116)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCEEEEEE-CCCCHHHHHHH
T ss_conf 299999999999999849966999868731459998589997-87878898897
No 182
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047 This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , . CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=30.69 E-value=31 Score=13.51 Aligned_cols=136 Identities=22% Similarity=0.317 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHCCC-CCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
Q ss_conf 99999999999971999999287-89813998683211005998899989998875426789999877421488078608
Q gi|254780451|r 100 VVDLAAMRDAIVVLGGDPQNINP-LVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPP 178 (896)
Q Consensus 100 ~vdlaamR~~~~~~g~dp~~inp-~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN~Ery~Flkwa~~~f~~~~v~pP 178 (896)
+=|-+-|..-.+++|-|-++-+- .+-++|= | ...|-+..++..+++.-.+---+.-|-+ +|..+.++|-
T Consensus 112 Ikde~KLk~~a~~lGid~e~~~~L~lA~~vA-~--~~l~D~~~~~~~~~~~lv~~~~~~~R~e-------~~~~L~ilP~ 181 (647)
T TIGR01702 112 IKDEAKLKWLAKKLGIDTEKDSKLELAVEVA-E--IVLDDLRKPDREEKAELVEAFAPEKRLE-------KWEKLGILPG 181 (647)
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH-H--HHHHHHHCCCCCCHHHHHHHHCCCHHHH-------HHHHCCCCCC
T ss_conf 3380999999988185401224689999999-9--9998741347230688999763841367-------8763688777
Q ss_pred CCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHHCCC--------CHHHHHHHHCCCCC-----
Q ss_conf 87621677898633511310368861798301320688764445201232034--------34899999707751-----
Q gi|254780451|r 179 GTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGV--------GGIEAEAAMLGCPI----- 245 (896)
Q Consensus 179 G~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~la~GV--------Gg~eaea~mlGqp~----- 245 (896)
| |-|-| .+-+++ |.+|-||--. -=.+.+|-.|+ ...+..++++|.|.
T Consensus 182 G--~~~e~-~~~~~~----------------t~tn~dsdpv-~L~~~~Lrlgia~~~~g~~~~~~l~DiLFGtP~p~~s~ 241 (647)
T TIGR01702 182 G--IKAEV-LDAVSK----------------TSTNLDSDPV-DLAVKALRLGIATGLTGQILAEELSDILFGTPQPVVSE 241 (647)
T ss_pred C--HHHHH-HHHHHH----------------HHCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 3--56899-998886----------------4237898779-99999999999999889999987536653899526873
Q ss_pred ---EECCCCEEEEEEECCCCCCCC
Q ss_conf ---411672899999767786443
Q gi|254780451|r 246 ---SMLLPEVVGFEVTGSLQEGVT 266 (896)
Q Consensus 246 ---~~~vPevigv~L~G~L~~gVt 266 (896)
-..=|+-|.|-++|. +|++.
T Consensus 242 ~~lgv~dP~~VNI~~~GH-~P~l~ 264 (647)
T TIGR01702 242 ADLGVLDPDYVNIVVNGH-QPLLS 264 (647)
T ss_pred CCCEECCCCCEEEEEECC-CHHHH
T ss_conf 676200767633688388-64688
No 183
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=30.57 E-value=23 Score=14.51 Aligned_cols=43 Identities=35% Similarity=0.475 Sum_probs=21.4
Q ss_pred EEEEECCCCCHHHCCCCCCCCCCCC-HHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 8999658857233164565554473-78889874988656314565302357776652036
Q gi|254780451|r 668 ILCLLGDKITTDHISPAGSIPLQSA-AASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSN 727 (896)
Q Consensus 668 vL~~lGD~iTTDHISPAG~I~~~sp-Ag~yL~~~Gv~~~dfNsygsRRgNhevM~RGtFaN 727 (896)
.|+.+||-|.- | ++|. .=++|.+. .+-+=|||||-|+--.+.+
T Consensus 47 ~LI~lGDlIDR------G---PdS~~vl~ll~~~--------~~~~v~GNHE~mll~~~~~ 90 (218)
T PRK11439 47 LLISVGDLIDR------G---PQSLRCLQLLREH--------WVRAVRGNHEQMALDALAS 90 (218)
T ss_pred EEEECCCEECC------C---CCHHHHHHHHHHC--------CCEEEECCHHHHHHHHHHC
T ss_conf 89985860178------9---7879999999828--------9849761479999987646
No 184
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=30.43 E-value=31 Score=13.48 Aligned_cols=33 Identities=36% Similarity=0.557 Sum_probs=28.2
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 67289999976778644368899999998410221
Q gi|254780451|r 249 LPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGV 283 (896)
Q Consensus 249 vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gv 283 (896)
++..++|-+|| +|||.-+-+++.|.+.|+..|.
T Consensus 2 ~~~~mki~ITG--~PGvGKtTl~~ki~e~L~~~g~ 34 (179)
T COG1618 2 IKMAMKIFITG--RPGVGKTTLVLKIAEKLREKGY 34 (179)
T ss_pred CCCCEEEEEEC--CCCCCHHHHHHHHHHHHHHCCC
T ss_conf 87545999867--9984589999999999985596
No 185
>pfam04775 Bile_Hydr_Trans Acyl-CoA thioester hydrolase/BAAT N-terminal region. This family consists of the amino termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT). This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism. For example, in peroxisomes, the hydrolase acts on bile-CoA esters.
Probab=30.33 E-value=31 Score=13.47 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=10.3
Q ss_pred CEEECCHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 100059789999985161222310023
Q gi|254780451|r 549 ANYLLSPPLVVAYALAGNVRKNLIKDP 575 (896)
Q Consensus 549 ~~yLaSP~lVvA~AiaG~I~~d~~~dp 575 (896)
+.|.|+. .|+| |+.+++
T Consensus 36 A~y~Ad~--------~G~v--DL~~~~ 52 (125)
T pfam04775 36 AVFRADA--------SGEV--DLARDA 52 (125)
T ss_pred EEEECCC--------CCEE--ECCCCC
T ss_conf 9998299--------9839--755478
No 186
>KOG0806 consensus
Probab=30.20 E-value=32 Score=13.45 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=29.3
Q ss_pred EEHHHHHHHHHHCCCCEEEECCCCC---CCCCHHHHHHH
Q ss_conf 7379999989981998899946777---86730799988
Q gi|254780451|r 754 LFIYDAAMRYKVDQVPLVVFAGVEY---GNGSSRDWAAK 789 (896)
Q Consensus 754 ~~iydaA~~Y~~~~~plVViAG~~Y---G~GSSRdwAAk 789 (896)
|..||.||.|.+++..+||..+.=+ ..-.++.|+=.
T Consensus 174 i~F~d~A~~~~~~g~~~ivyPtaw~~~~l~~~~~hw~~~ 212 (298)
T KOG0806 174 IRFYDPAMILVKDGADLIVYPTAWNNELLSAVPLHWALL 212 (298)
T ss_pred CCCCCHHHHHHHCCCCEEEECCHHHHHCCCCCCHHHHHH
T ss_conf 455236799997188489936067400146651579999
No 187
>COG0147 TrpE Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=30.20 E-value=32 Score=13.45 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=10.8
Q ss_pred CCCCCCCCEEEECCCHH
Q ss_conf 01003720377519989
Q gi|254780451|r 309 MAPEYGATCGFFPVDRG 325 (896)
Q Consensus 309 Ma~E~GAt~gifp~De~ 325 (896)
..+..|.-.|+|..|-.
T Consensus 99 ~~~~~~g~~G~~~yd~~ 115 (462)
T COG0147 99 EPPFQGGLVGYFSYDLV 115 (462)
T ss_pred CCCCCCCEEEEEEEHHH
T ss_conf 65556977999960111
No 188
>TIGR00829 FRU PTS system, Fru family, IIB component; InterPro: IPR003353 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). IIB (2.7.1.69 from EC) is is phosphorylated by phospho-IIA, before the phosphoryl group is transferred to the sugar substrate.; GO: 0005351 sugar:hydrogen ion symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane.
Probab=29.80 E-value=32 Score=13.40 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=22.9
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 3104676545999877889998898649875867307
Q gi|254780451|r 434 SITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKT 470 (896)
Q Consensus 434 aIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt 470 (896)
|||||=- .-=.=.+||-=|-+.|.++|++|| |-|
T Consensus 2 AvTACPT-GiAHTFMAaEale~~Ak~~g~~vk--VET 35 (85)
T TIGR00829 2 AVTACPT-GIAHTFMAAEALEKAAKKRGWEVK--VET 35 (85)
T ss_pred EECCCCC-CCCHHHHHHHHHHHHHHHCCCEEE--EEE
T ss_conf 2434898-300357778999999984699788--885
No 189
>TIGR02924 ICDH_alpha isocitrate dehydrogenase; InterPro: IPR014273 This entry represents a group of isocitrate dehydrogenases found mainly in the alphaproteobacteria. Many of the species containing these proteins appear to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 from EC vs. NADPH -- 1.1.1.42 from EC) is unclear..
Probab=29.76 E-value=19 Score=15.00 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=15.2
Q ss_pred CCCCCEEEEEECC-CCCHHHCC
Q ss_conf 4358558999658-85723316
Q gi|254780451|r 662 DICGARILCLLGD-KITTDHIS 682 (896)
Q Consensus 662 ~i~~arvL~~lGD-~iTTDHIS 682 (896)
|..-.|=+.+-++ .|++-||+
T Consensus 432 D~~~CRF~~~~~~~~i~~~~I~ 453 (481)
T TIGR02924 432 DQLCCRFIAKANKDEIKNTDIN 453 (481)
T ss_pred CCEEEEEEECCCCCCHHHHHHH
T ss_conf 7406776306776611367899
No 190
>COG0831 UreA Urea amidohydrolase (urease) gamma subunit [Amino acid transport and metabolism]
Probab=29.73 E-value=32 Score=13.40 Aligned_cols=53 Identities=28% Similarity=0.206 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHCCCCCC-CCCEEEEECCCHHHHHHHHHCC-CHHHHHHHCCEECCC
Q ss_conf 98778899988986498758-6730797016189999999858-857777505302055
Q gi|254780451|r 446 VMIGAGLLARNAVRAGLKSK-PWVKTSCAPGSQVSYEYLVQAG-LVEYLEALGFSLVGF 502 (896)
Q Consensus 446 ~miaAgllAkkAv~~Glkv~-p~Vkt~l~PGS~~V~~~L~~~G-ll~~L~~aGf~i~~~ 502 (896)
++..|+.||++-.++|+|.+ |-- ++-=|-.|.+.. ++| ....|.+.|.+++..
T Consensus 12 li~~a~~lA~rR~~RGlKLN~pEA---vAlIs~~i~Ega-RdGktVaelM~~g~~vL~~ 66 (100)
T COG0831 12 LIFTAAELARRRKARGLKLNYPEA---VALISAFILEGA-RDGKTVAELMSEGRHVLTR 66 (100)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHHH-HCCCCHHHHHHHHHHHCCH
T ss_conf 999999999999965755576989---999999999861-4456199999876563788
No 191
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=29.70 E-value=32 Score=13.39 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=9.8
Q ss_pred EECCCCCCCCHHHHHHHHHHH
Q ss_conf 976778644368899999998
Q gi|254780451|r 257 VTGSLQEGVTATDLVLTITQM 277 (896)
Q Consensus 257 L~G~L~~gVtakDiiL~i~~~ 277 (896)
+..+..-|-+.=|-|+.-|.+
T Consensus 186 FDNrYGtgqS~~dgi~r~Tn~ 206 (430)
T pfam05221 186 FDNLYGCRESLPDGIKRATDV 206 (430)
T ss_pred HCCCCCCHHHHHHHHHHHHCC
T ss_conf 013433123099999986171
No 192
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.48 E-value=24 Score=14.29 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9998898649875867307970161899999998
Q gi|254780451|r 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 452 llAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
-+++..++-|+++-.- |.=+|++..+...+.+
T Consensus 32 ~~a~aL~~gGi~~iEi--Tlrt~~a~~~i~~l~~ 63 (223)
T PRK07114 32 KVVKACYDGGVRAFEF--TNRGDFAHEVFGELVK 63 (223)
T ss_pred HHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHH
T ss_conf 9999999889988999--5889658999999999
No 193
>PRK06091 membrane protein FdrA; Validated
Probab=29.40 E-value=33 Score=13.36 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=24.0
Q ss_pred CCCCEEEHHHHHHHHHHCCCCEEEECCCCCCCCCHHH---HHHHHHHHCCEEEEEECCHH
Q ss_conf 8997873799999899819988999467778673079---99886676170899976478
Q gi|254780451|r 749 PSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRD---WAAKGTRLLGVRSVIAESFE 805 (896)
Q Consensus 749 p~~~~~~iydaA~~Y~~~~~plVViAG~~YG~GSSRd---wAAkgp~lLGVkAVIA~SFe 805 (896)
|-++..+.-+.++.-+.+|.+++||| |=||...| +..-.-.|-..-++++.|=+
T Consensus 427 Pag~L~paI~~a~~a~~~gr~l~vVa---~V~GT~~DPQ~~~~Q~~~L~~AGv~V~~SNa 483 (555)
T PRK06091 427 PAASLVSAWQKACAARSDNQPLYAIA---TVTGTERDPQCRSQQIATLEDAGIAVVSSLP 483 (555)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEE---EEECCCCCCCCHHHHHHHHHHCCEEEECCCH
T ss_conf 48999999999997553389638999---9807888973899999999968959975739
No 194
>PRK06857 consensus
Probab=29.36 E-value=18 Score=15.20 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=16.6
Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9998898649875867307970161899999998
Q gi|254780451|r 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 452 llAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
-+++..++-|+++-.- |.=+|++..+-+.+.+
T Consensus 28 ~~~~al~~gGi~~iEi--Tlrt~~a~~~I~~l~~ 59 (209)
T PRK06857 28 PLAKVLAENGLPVAEI--TFRSAAAAEAIRLLRE 59 (209)
T ss_pred HHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHH
T ss_conf 9999999879988999--5899329999999997
No 195
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=29.14 E-value=33 Score=13.33 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCC--CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 78644368899999998410221--212799961550017875632120001003720377519
Q gi|254780451|r 261 LQEGVTATDLVLTITQMLRKEGV--VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322 (896)
Q Consensus 261 L~~gVtakDiiL~i~~~Lr~~Gv--vgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~ 322 (896)
.+-|..+=|++|- .|+ .|+++|++|+--..=|.-.=.+|+| +...|..|.||-.
T Consensus 33 i~tgs~~lD~aLg-------~GGlP~GRi~ei~G~essGKTtlal~~ia~-aQk~gg~~~~iD~ 88 (322)
T pfam00154 33 ISTGSLGLDIALG-------IGGLPKGRIIEIYGPESSGKTTLALHAIAE-AQKAGGTAAFIDA 88 (322)
T ss_pred EECCHHHHHHHHC-------CCCCCCCEEEEEECCCCCCHHHHHHHHHHH-HHHCCCEEEEEEH
T ss_conf 6158089999875-------899778708999889877789999999999-9734993899853
No 196
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=28.96 E-value=33 Score=13.30 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 11999999887404866579999999861235545777663645325220000035799999999999997199999928
Q gi|254780451|r 42 CSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNIN 121 (896)
Q Consensus 42 ~s~rillEn~~R~~~~~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~in 121 (896)
-++|-+++..|...+-...+.++.+..+.|.... .......-+.|+|..|.-.+-++ .+..
T Consensus 14 ~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~-----~~~lvl~Di~mp~~~Gl~ll~~i--------------~~~~ 74 (464)
T COG2204 14 PDIRELLEQALELAGYEVVTAESAEEALEALSES-----PFDLVLLDIRMPGMDGLELLKEI--------------KSRD 74 (464)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-----CCCEEEEECCCCCCCHHHHHHHH--------------HHHC
T ss_conf 8999999999997697489858999999998628-----99989981678999669999999--------------9638
Q ss_pred CCCCEEEEEECC
Q ss_conf 789813998683
Q gi|254780451|r 122 PLVPVDLVIDHS 133 (896)
Q Consensus 122 p~vp~dlviDHs 133 (896)
|.+||-++..|+
T Consensus 75 ~~~pVI~~Tg~g 86 (464)
T COG2204 75 PDLPVIVMTGHG 86 (464)
T ss_pred CCCCEEEEECCC
T ss_conf 999889982889
No 197
>smart00788 Adenylsucc_synt Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Furt
Probab=28.90 E-value=33 Score=13.30 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=12.6
Q ss_pred EEECCHHHHHHHHHHCCCCCCCC
Q ss_conf 00059789999985161222310
Q gi|254780451|r 550 NYLLSPPLVVAYALAGNVRKNLI 572 (896)
Q Consensus 550 ~yLaSP~lVvA~AiaG~I~~d~~ 572 (896)
-||=-+.+==|-.+.|--.+-++
T Consensus 306 GW~D~v~lr~a~~ing~~~l~lT 328 (421)
T smart00788 306 GWFDAVLLRYAVRINGITGLALT 328 (421)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 76667999999997599769887
No 198
>pfam00851 Peptidase_C6 Helper component proteinase. This protein is found in genome polyproteins of potyviruses.
Probab=28.87 E-value=33 Score=13.29 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=12.2
Q ss_pred CCEEEEEECCCCCHHHCCCCCC
Q ss_conf 8558999658857233164565
Q gi|254780451|r 665 GARILCLLGDKITTDHISPAGS 686 (896)
Q Consensus 665 ~arvL~~lGD~iTTDHISPAG~ 686 (896)
-++|+=-+|---|-=||--||.
T Consensus 410 TmHViDSfGSlstGYHILKA~T 431 (453)
T pfam00851 410 TMHVVDSYGSLSTGYHVLKANT 431 (453)
T ss_pred EEEECCCCCCCCCCEEEEEHHH
T ss_conf 4786047765454426664215
No 199
>TIGR02134 transald_staph transaldolase; InterPro: IPR011861 This small family of proteins belong to the transaldolases. Coxiella and Staphylococcus lack members of the known transaldolase families and appear to require a transaldolase activity for completion of the pentose phosphate pathway..
Probab=28.35 E-value=24 Score=14.34 Aligned_cols=103 Identities=25% Similarity=0.245 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHH-----HHHHHHCCCCCCCCCEEEEECCCHHH-HHH---HHHCCCHHHHHHHCCEEC--CCCCCCCCC
Q ss_conf 5459998778899-----98898649875867307970161899-999---998588577775053020--553224212
Q gi|254780451|r 441 TFNPSVMIGAGLL-----ARNAVRAGLKSKPWVKTSCAPGSQVS-YEY---LVQAGLVEYLEALGFSLV--GFGCTTCIG 509 (896)
Q Consensus 441 tSnp~~miaAgll-----AkkAv~~Glkv~p~Vkt~l~PGS~~V-~~~---L~~~Gll~~L~~aGf~i~--~~GCg~CiG 509 (896)
|.||++|..||+. |++|++.==+ .|=|=.| .+- +|+. -+++.+.|=++- =| -+..-|
T Consensus 31 TTNPsLM~kAGi~dY~aFA~ealaqItd---------~piSFEVFADdL~~MEke--A~~ias~GnNV~vKIP-vtntkG 98 (237)
T TIGR02134 31 TTNPSLMKKAGISDYKAFAKEALAQITD---------LPISFEVFADDLEEMEKE--AEKIASYGNNVYVKIP-VTNTKG 98 (237)
T ss_pred ECCHHHHHHCCCCCHHHHHHHHHHHCCC---------CCEEEEEECCCHHHHHHH--HHHHHHHCCCEEEEEE-EECCCC
T ss_conf 1786667444866458899999973479---------962455540316568999--9999870793278841-241889
Q ss_pred CC-CCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCE--EEC--CHHHHHHHHHHCCCC
Q ss_conf 77-768830221011366358786336766665468543310--005--978999998516122
Q gi|254780451|r 510 NS-GALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEAN--YLL--SPPLVVAYALAGNVR 568 (896)
Q Consensus 510 ns-G~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~--yLa--SP~lVvA~AiaG~I~ 568 (896)
.| +||-...+.. .=.|.++||.+ |.+++.+ .|+ -|.. -+-.||||.
T Consensus 99 esT~PlIqkLSad--gi~LNvTA~~T---------ieQv~~v~~~~t~gvP~i--VSVFAGRiA 149 (237)
T TIGR02134 99 ESTIPLIQKLSAD--GIKLNVTAVYT---------IEQVKKVVEALTEGVPAI--VSVFAGRIA 149 (237)
T ss_pred CCCCHHHHHHHHC--CCEEEEEEECC---------HHHHHHHHHHHHCCCCCE--EEEECCEEE
T ss_conf 5153078664024--86675435402---------588999999874589817--987212020
No 200
>PRK08782 consensus
Probab=28.27 E-value=18 Score=15.22 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=19.4
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 889998898649875867307970161899999998
Q gi|254780451|r 450 AGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 450 AgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
|--+++..++.|+++-.- |.=+|++..+-+.+.+
T Consensus 31 a~~~~eal~~gGi~~iEi--Tlrt~~a~~~i~~l~~ 64 (219)
T PRK08782 31 ARRVADALLEGGLPAIEL--TLRTPVAIEALAMLKR 64 (219)
T ss_pred HHHHHHHHHHCCCCEEEE--ECCCCHHHHHHHHHHH
T ss_conf 999999999879987999--6799339999999998
No 201
>pfam12000 DUF3495 Domain of unknown function (DUF3495). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 170 amino acids in length. This domain is found associated with pfam00534. This domain has a single completely conserved residue G that may be functionally important.
Probab=28.19 E-value=17 Score=15.39 Aligned_cols=20 Identities=25% Similarity=0.828 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCCCHH
Q ss_conf 55488886320015688857
Q gi|254780451|r 576 IGEDQQGSPVYLRDIWPKDS 595 (896)
Q Consensus 576 lg~~~~G~~v~L~DiwPs~~ 595 (896)
++.--=|+..||||+||...
T Consensus 71 i~H~GWGe~LfLkdv~P~a~ 90 (172)
T pfam12000 71 VAHPGWGETLFLKDVWPDAR 90 (172)
T ss_pred EECCCCCCHHCHHHHCCCCC
T ss_conf 87587640105777765887
No 202
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase; InterPro: IPR001160 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This majority of this group of proteins are aminoacyl-histidine dipeptidases (3.4.13.3 from EC, Xaa-His dipeptidases), which are zinc-containing metallopeptidases that belong to MEROPS peptidase family M20 (clan MH), subfamily M20C . Proteins of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His , . The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide.. The X-His dipeptidases cleave Xaa-His dipeptides (where Xaa is any hydrophobic residue). The amino acid sequence deduced from Escherichia coli reveals that peptidase D is a slightly hydrophilic protein of 485 residues that contains no extended domains of marked hydrophobicity . Also contained within this family of proteins are acetylornithine deactylases which belong to MEROPS peptidase family M20, subfamily M20A non-peptidase homologues. ; GO: 0008769 X-His dipeptidase activity, 0006508 proteolysis.
Probab=28.07 E-value=28 Score=13.84 Aligned_cols=164 Identities=19% Similarity=0.248 Sum_probs=89.0
Q ss_pred CCCCCHHHHHHHHHCCCEEEECCCCCEEEEEE--EEEECCCCCCCCCCCHHHH--------------------CC-CCHH
Q ss_conf 88762167789863351131036886179830--1320688764445201232--------------------03-4348
Q gi|254780451|r 178 PGTGICHQINLEYLGQSVWTKNENGENIAYPD--TCVGTDSHTTMINALGILG--------------------WG-VGGI 234 (896)
Q Consensus 178 PG~GI~HQvnlE~la~vv~~~~~~~~~~a~Pd--tlVGtDSHT~~~galG~la--------------------~G-VGg~ 234 (896)
.-+||-=-..|==|+..+ ..++.+|+ .|+=+|==|.|.||+|-=. .| .||.
T Consensus 109 ADNGIgVA~~lA~le~~i------k~~l~HPplElL~T~~EE~gm~GA~gL~~~~~~G~~LiNiDsEeeG~~~vGCAGG~ 182 (506)
T TIGR01893 109 ADNGIGVAMGLAILEDAI------KNNLKHPPLELLFTVDEETGMDGALGLEENLLEGKILINIDSEEEGELLVGCAGGI 182 (506)
T ss_pred CCCHHHHHHHHHHHHHHH------HCCCCCCCEEEEEEECCCCCCHHHHHCCCCCCCCCEEEECCCEEEEEEEEEECCCE
T ss_conf 550799999999998853------02578786458886000045223321255500165012137533348999722760
Q ss_pred HHHHHHCCCCCEECC-----CCEEEEEEECCCCCCCCHHHHHH----------HHHHHHCCCCC--CCEEEEEEE-CCCC
Q ss_conf 999997077514116-----72899999767786443688999----------99998410221--212799961-5500
Q gi|254780451|r 235 EAEAAMLGCPISMLL-----PEVVGFEVTGSLQEGVTATDLVL----------TITQMLRKEGV--VSKFVEFFG-SGFE 296 (896)
Q Consensus 235 eaea~mlGqp~~~~v-----Pevigv~L~G~L~~gVtakDiiL----------~i~~~Lr~~Gv--vgk~vEf~G-~gi~ 296 (896)
+++..+=-|--.+.- =+.+++.++| |..|=++-||=+ .++..|++.=. .=+..++.| +---
T Consensus 183 ~~~~~lp~~~e~~~~~~GsG~~~~~I~~~G-L~GGHSG~dIH~~RANankLm~~~L~~~~~n~~ke~~~L~~i~GGS~~N 261 (506)
T TIGR01893 183 NVEITLPVKYEKFEKDEGSGFKGYRISLKG-LKGGHSGADIHKGRANANKLMARVLSELKENLDKENFRLSDIKGGSKRN 261 (506)
T ss_pred EEEEEECCCEEEEECCCCCCEEEEEEEEEC-CCCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 467882550023233666412479999653-7668755401112235899999999999833792405787741787256
Q ss_pred CCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 17875632120001003720377519989999998639998899999987464102367676678863069999803143
Q gi|254780451|r 297 SMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVS 376 (896)
Q Consensus 297 ~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiDLs~ie 376 (896)
+.+- |+-|...+=--|.+++. ++|+.|... |+.-. +.-+..+.|-+++.|
T Consensus 262 AIPr-----------EA~a~ia~~~~d~~~~~------------~~v~~~~~~---~K~~Y----~~~~~~~~~~~~~~E 311 (506)
T TIGR01893 262 AIPR-----------EAKALIAIDEEDVKKLE------------ELVKNFQSK---FKKEY----SELEPNITLEVSKEE 311 (506)
T ss_pred CCCC-----------CEEEEEEECCCHHHHHH------------HHHHHHHHH---HHHHH----HHCCCCCEEEEEEEC
T ss_conf 7744-----------14799998152089999------------998889998---76665----311888318998632
Q ss_pred CH
Q ss_conf 01
Q gi|254780451|r 377 PS 378 (896)
Q Consensus 377 P~ 378 (896)
-.
T Consensus 312 ~~ 313 (506)
T TIGR01893 312 NS 313 (506)
T ss_pred CE
T ss_conf 61
No 203
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=27.95 E-value=34 Score=13.18 Aligned_cols=12 Identities=25% Similarity=0.086 Sum_probs=4.6
Q ss_pred CCCCCCCCHHHH
Q ss_conf 677864436889
Q gi|254780451|r 259 GSLQEGVTATDL 270 (896)
Q Consensus 259 G~L~~gVtakDi 270 (896)
-.||.|+..+|+
T Consensus 35 y~lP~~v~~~~l 46 (119)
T cd05017 35 YTLPAFVDRKTL 46 (119)
T ss_pred CCCCCCCCCCCE
T ss_conf 989875587878
No 204
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=27.86 E-value=22 Score=14.57 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCH
Q ss_conf 7999998998199889994677786730
Q gi|254780451|r 756 IYDAAMRYKVDQVPLVVFAGVEYGNGSS 783 (896)
Q Consensus 756 iydaA~~Y~~~~~plVViAG~~YG~GSS 783 (896)
+.|.+++|.=.++|.+++-|+..+.|..
T Consensus 54 f~d~~~~~~ImsVP~vviN~e~~~~G~~ 81 (89)
T cd03026 54 FQDEVEERGIMSVPAIFLNGELFGFGRM 81 (89)
T ss_pred CHHHHHHCCCCCCCEEEECCEEEEECCC
T ss_conf 7889997596448979999967740651
No 205
>pfam07159 DUF1394 Protein of unknown function (DUF1394). This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=27.63 E-value=24 Score=14.27 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.1
Q ss_pred ECCCCCHHHCCCCCCCCCCCCH
Q ss_conf 6588572331645655544737
Q gi|254780451|r 672 LGDKITTDHISPAGSIPLQSAA 693 (896)
Q Consensus 672 lGD~iTTDHISPAG~I~~~spA 693 (896)
.|==|--||+.|.|++.+.|+-
T Consensus 242 vG~IILYDhVhp~GAF~k~s~i 263 (304)
T pfam07159 242 VGVIILYDHVHPVGAFAKTSKI 263 (304)
T ss_pred HCEEEEECCCCCCCCCCCCCCC
T ss_conf 3226642355777665557888
No 206
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=27.37 E-value=35 Score=13.11 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHH
Q ss_conf 07999886676170899976478988850535523223317898988
Q gi|254780451|r 783 SRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWK 829 (896)
Q Consensus 783 SRdwAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~ 829 (896)
..-+++.--.+.||.+||+.++-.--..-|...||-|.+-.++.+.+
T Consensus 49 ~~~~~~~~~~~~g~~vvi~~~iG~~a~~~L~~~GI~v~~~~~~~~i~ 95 (102)
T cd00562 49 EGKLAARLLALEGCDAVLVGGIGGPAAAKLEAAGIKPIKAAEGGTIE 95 (102)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 31156789988899799988759889999998799999907999699
No 207
>PRK08392 hypothetical protein; Provisional
Probab=27.22 E-value=29 Score=13.73 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCC---CCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 999877889998898649875---86730797016189999999858857777505302055322421277768830221
Q gi|254780451|r 444 PSVMIGAGLLARNAVRAGLKS---KPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISE 520 (896)
Q Consensus 444 p~~miaAgllAkkAv~~Glkv---~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~l~~~i~~ 520 (896)
++.|+. .|.++|++. ...... .|++. ...|.++--.++ +..|+.++ .||=.=| ..|.++- ..+
T Consensus 16 i~E~~~------aA~~~Gl~~i~ITDH~~~--~~~~~-~~~~~~~i~~~~--~~~~i~iL-~GiE~nI-l~g~lD~-~~~ 81 (215)
T PRK08392 16 VRDNVA------WAEKRGLKLLGISDHIHY--FTPSK-FNRYINEIRRWG--EESEIVVL-AGIEANI-TENGPDI-TDD 81 (215)
T ss_pred HHHHHH------HHHHCCCCEEEEECCCCC--CCHHH-HHHHHHHHHHHH--HHCCCEEE-EEEEECC-CCCCCCC-CHH
T ss_conf 999999------999879948998069998--88289-999999999854--40697799-9776350-4898786-799
Q ss_pred HCCCCCEEEEEEEC
Q ss_conf 01136635878633
Q gi|254780451|r 521 VIHQKSLVVAGVLS 534 (896)
Q Consensus 521 ~i~~~~l~~~sV~S 534 (896)
...+-|.+.+||.+
T Consensus 82 ~l~~lD~vIasvH~ 95 (215)
T PRK08392 82 FAKKLDYVIASVHE 95 (215)
T ss_pred HHHHCCEEEEEEEE
T ss_conf 99869979999873
No 208
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=27.10 E-value=30 Score=13.63 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHH--HHHCC--CCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCCCCC
Q ss_conf 765459998778899988--98649--8758673079701618999999985885777750530205532242127776
Q gi|254780451|r 439 TNTFNPSVMIGAGLLARN--AVRAG--LKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGA 513 (896)
Q Consensus 439 TNtSnp~~miaAgllAkk--Av~~G--lkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGnsG~ 513 (896)
.|+|+-..|++| +..++ .+.++ -+++.--|..+.|+..+|++...+.| .+++||--+||
T Consensus 192 ~n~s~~a~lv~a-l~~~~~~l~~~~~~D~ihepyR~~L~P~~~~v~~~a~~~g---------------A~g~~lSGAGP 254 (299)
T COG0083 192 FNLSRAALLVAA-LLEGDPELLRAMMKDVIHEPYRAKLVPGYAEVREAALEAG---------------ALGATLSGAGP 254 (299)
T ss_pred HHHHHHHHHHHH-HHCCCHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCC---------------CEEEEEECCCC
T ss_conf 999999999999-9769999999870360104666532701899999986479---------------65999964787
No 209
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=27.04 E-value=33 Score=13.31 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=28.3
Q ss_pred HHHHHCCCHHH-HHHHCCEECCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 99998588577-7750530205532242127776883022101
Q gi|254780451|r 481 EYLVQAGLVEY-LEALGFSLVGFGCTTCIGNSGALKKEISEVI 522 (896)
Q Consensus 481 ~~L~~~Gll~~-L~~aGf~i~~~GCg~CiGnsG~l~~~i~~~i 522 (896)
..+++.|+.-+ -.++|++-+.+|--||+|- ||.+.+.-+.|
T Consensus 68 ~~a~~~gl~~~~V~DAG~Tei~pgt~Tvlai-GP~p~~~id~i 109 (116)
T PRK04322 68 KKAERLGLPTALIRDAGLTQIPPGTVTALGI-GPAPEELIDKI 109 (116)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCEEEEEE-CCCCHHHHHHH
T ss_conf 9999879968999768873538998589998-87888898887
No 210
>pfam05616 Neisseria_TspB Neisseria meningitidis TspB protein. This family consists of several Neisseria meningitidis TspB virulence factor proteins.
Probab=27.00 E-value=36 Score=13.07 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=8.0
Q ss_pred EECCCCCCCCCHHH
Q ss_conf 99467778673079
Q gi|254780451|r 772 VFAGVEYGNGSSRD 785 (896)
Q Consensus 772 ViAG~~YG~GSSRd 785 (896)
|+|-++-|.-|++|
T Consensus 412 ILAC~~mG~pse~~ 425 (502)
T pfam05616 412 ILACAEMGEPSEND 425 (502)
T ss_pred HHHHHHCCCCCCCC
T ss_conf 56576608965577
No 211
>pfam06263 consensus
Probab=27.00 E-value=36 Score=13.07 Aligned_cols=48 Identities=25% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEE---ECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCC
Q ss_conf 88999889864987586730797---0161899999998588577775053020553224212
Q gi|254780451|r 450 AGLLARNAVRAGLKSKPWVKTSC---APGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG 509 (896)
Q Consensus 450 AgllAkkAv~~Glkv~p~Vkt~l---~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiG 509 (896)
|+..|.+|.++|+.|- ++ +|--..++ |++ .-.+-|--+.||-|||+|=
T Consensus 128 Aa~eA~~AL~~gl~Vm-----lFSDNVs~edE~~--LK~-----~A~ekGLlvMGPDCGTaii 178 (514)
T pfam06263 128 AAAEAEKALNLGLHVM-----LFSDNVSVEDEVA--LKQ-----LAHEKGLLVMGPDCGTAII 178 (514)
T ss_pred HHHHHHHHHHCCCCEE-----EECCCCCHHHHHH--HHH-----HHHHCCCEEECCCCCHHHH
T ss_conf 9999999998799379-----9749997799999--999-----9987794888898622442
No 212
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=26.80 E-value=36 Score=13.04 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=8.1
Q ss_pred EECCCCCCCCHHHHHHHHHH
Q ss_conf 97677864436889999999
Q gi|254780451|r 257 VTGSLQEGVTATDLVLTITQ 276 (896)
Q Consensus 257 L~G~L~~gVtakDiiL~i~~ 276 (896)
+..+-.-|-+.=|-|+..|.
T Consensus 184 FDNrYGtGqS~~dgi~r~Tn 203 (427)
T PRK05476 184 FDNRYGTGESLLDGIKRATN 203 (427)
T ss_pred CCCCCCCCCCHHHHHHHHHC
T ss_conf 24553346249999998735
No 213
>TIGR02055 APS_reductase adenylylsulfate reductase, thioredoxin dependent; InterPro: IPR011798 This entry describes recently identified adenosine 5'-phosphosulphate (APS) reductase activity found in sulphate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulphate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL and SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.; GO: 0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity, 0019344 cysteine biosynthetic process.
Probab=26.74 E-value=36 Score=13.03 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=28.6
Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHCCCHH-HHHHHCCEECCCCCCCCC
Q ss_conf 87586730797016189999999858857-777505302055322421
Q gi|254780451|r 462 LKSKPWVKTSCAPGSQVSYEYLVQAGLVE-YLEALGFSLVGFGCTTCI 508 (896)
Q Consensus 462 lkv~p~Vkt~l~PGS~~V~~~L~~~Gll~-~L~~aGf~i~~~GCg~Ci 508 (896)
.|++| +..=+++.|.+|+.+.+|.- .|-+=|.-=. ||-||=
T Consensus 133 ~K~nP----La~Wt~~~vw~Yi~~~~~~~NpL~~~GYpSI--GCePCT 174 (200)
T TIGR02055 133 VKVNP----LADWTLEDVWEYIADNEVPYNPLHDRGYPSI--GCEPCT 174 (200)
T ss_pred EEECC----CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCC
T ss_conf 44366----0004668999999970788786311688535--877788
No 214
>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family; InterPro: IPR014274 Proteins in this entry include EpsD from Methylobacillus sp. 12S and belong to the peptidyl-prolyl cis-trans isomerase family. They are located at loci associated with exopolysaccharide biosynthesis and are encoded near a homologue of EpsH (IPR013426 from INTERPRO)..
Probab=26.54 E-value=31 Score=13.51 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 88857888887641583210001
Q gi|254780451|r 591 WPKDSEIQSFVNKYVTCDLYKKK 613 (896)
Q Consensus 591 wPs~~Ei~~~~~~~v~~~~f~~~ 613 (896)
-||.+||.+|+..+ |+||.++
T Consensus 118 ~Ps~~e~~~Y~~~H--P~LFA~R 138 (236)
T TIGR02925 118 KPSPEEIKEYFQEH--PELFAER 138 (236)
T ss_pred CCCHHHHHHHHHHH--HHHHHHC
T ss_conf 87888898886100--5667606
No 215
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.29 E-value=29 Score=13.69 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=17.5
Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9998898649875867307970161899999998
Q gi|254780451|r 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 452 llAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
-+++..++.|+++-.- |.=+|++..+-+.+.+
T Consensus 31 ~i~~al~~gGi~~iEi--Tl~tp~a~~~I~~l~~ 62 (212)
T PRK05718 31 PLAKALVAGGLPVLEV--TLRTPAALEAIRAIRK 62 (212)
T ss_pred HHHHHHHHCCCCEEEE--ECCCCHHHHHHHHHHH
T ss_conf 9999999879978999--5789619999999997
No 216
>TIGR01382 PfpI intracellular protease, PfpI family; InterPro: IPR006286 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad . This group of cysteine peptidases belong to MEROPS peptidase family C56 (Pfp1 endopeptidase, clan PC(C)). The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallises as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. This family is contained in a larger one of the thiamine biosynthesis protein ThiJ and its homologs.; GO: 0016798 hydrolase activity acting on glycosyl bonds.
Probab=26.00 E-value=22 Score=14.60 Aligned_cols=45 Identities=29% Similarity=0.595 Sum_probs=27.8
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCC
Q ss_conf 753104676545999877889998898649875867307970161899999998588577775053020553
Q gi|254780451|r 432 IASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFG 503 (896)
Q Consensus 432 IAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~G 503 (896)
+||| |-- |.+++.|+.| ||+|+- ..|+- -+...+..||+.+.--+
T Consensus 112 vaaI--Chg---p~lLi~A~Vl------rGkk~T------~y~aP----------ei~~d~~nAGaey~D~~ 156 (189)
T TIGR01382 112 VAAI--CHG---PQLLISAGVL------RGKKLT------AYPAP----------EIIDDVKNAGAEYVDIR 156 (189)
T ss_pred EEEE--ECC---CEEEEECCEE------CCCEEE------ECCCC----------CCHHHHHHCCEEEEECC
T ss_conf 9998--453---0000025510------375375------33998----------62155652861167878
No 217
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=25.92 E-value=37 Score=12.93 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=32.3
Q ss_pred CCCC-CCCCHHHHHHHHHHHHCCCC-CC-CEEEEEEECCCCCCCHHHHHHHHC
Q ss_conf 6778-64436889999999841022-12-127999615500178756321200
Q gi|254780451|r 259 GSLQ-EGVTATDLVLTITQMLRKEG-VV-SKFVEFFGSGFESMVLADRATIAN 308 (896)
Q Consensus 259 G~L~-~gVtakDiiL~i~~~Lr~~G-vv-gk~vEf~G~gi~~LS~~dRaTIaN 308 (896)
|... .|+.-|||.|.|...|++.= -. |.-|-++=++=.-+++.+|..|||
T Consensus 206 GAiG~~g~~EKdI~L~IA~kL~~~L~~~~~~~vvlTR~~D~fv~L~~R~~iAn 258 (444)
T PRK10431 206 GAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVAR 258 (444)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 87798997533999999999999998579976999706887578789999999
No 218
>PHA02239 putative protein phosphatase
Probab=25.88 E-value=32 Score=13.45 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=5.0
Q ss_pred CCCHHHHHHHH
Q ss_conf 16189999999
Q gi|254780451|r 474 PGSQVSYEYLV 484 (896)
Q Consensus 474 PGS~~V~~~L~ 484 (896)
|-|+.|.+++.
T Consensus 44 p~S~~vi~~l~ 54 (235)
T PHA02239 44 KRSKDVVNYIF 54 (235)
T ss_pred CCHHHHHHHHH
T ss_conf 56299999999
No 219
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=25.81 E-value=37 Score=12.92 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=15.2
Q ss_pred HHHHCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 221011366358786336766665468
Q gi|254780451|r 518 ISEVIHQKSLVVAGVLSGNRNFEGRIS 544 (896)
Q Consensus 518 i~~~i~~~~l~~~sV~SgNRNFeGR~~ 544 (896)
..+++..+|+..++ +||+|--.+-|
T Consensus 251 m~~a~~~~DifiTa--TGn~~VI~~eH 275 (413)
T cd00401 251 MEEAVKEGDIFVTT--TGNKDIITGEH 275 (413)
T ss_pred HHHHHHHCCEEEEE--CCCCCCCCHHH
T ss_conf 99997238999993--38877373999
No 220
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase; InterPro: IPR005785 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C-terminus side of the PlP-lysine. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE) (2.6.1.42 from EC). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family. ; GO: 0004084 branched-chain-amino-acid transaminase activity, 0009081 branched chain family amino acid metabolic process.
Probab=25.72 E-value=34 Score=13.24 Aligned_cols=79 Identities=24% Similarity=0.193 Sum_probs=44.0
Q ss_pred CCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCC-CCCCCCHHHHHCCCCCEEEEEEECCCCC
Q ss_conf 498758673079701618999999985885777750530205532242127-7768830221011366358786336766
Q gi|254780451|r 460 AGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGN-SGALKKEISEVIHQKSLVVAGVLSGNRN 538 (896)
Q Consensus 460 ~Glkv~p~Vkt~l~PGS~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGn-sG~l~~~i~~~i~~~~l~~~sV~SgNRN 538 (896)
-+|+-.-|+|-++-=|...- ||.+-+ .+|.|=+.- .-||.+=..+..-++++. +-|+|.+||
T Consensus 81 NnL~sdaYIRPl~~~G~~~l-------Gl~P~k---------~~~~~~v~iaAw~WGaYLG~eALE~Gi~-a~vSSw~R~ 143 (302)
T TIGR01122 81 NNLRSDAYIRPLVYYGYGDL-------GLDPRK---------IGLKVDVAIAAWPWGAYLGEEALEKGID-AKVSSWRRN 143 (302)
T ss_pred CCCCCCEEEEEEEEECCCCC-------CCCCCC---------CCCCEEEEEEEECCCCCCCCHHHHCCCE-EEEEEEEEC
T ss_conf 38736703611889733002-------115634---------7887079998205774326135558836-999988635
Q ss_pred CCCCCCCCCCC--EEECCH
Q ss_conf 66546854331--000597
Q gi|254780451|r 539 FEGRISPDVEA--NYLLSP 555 (896)
Q Consensus 539 FeGR~~p~~~~--~yLaSP 555 (896)
=..-+-+.+|+ |||-|=
T Consensus 144 ~~n~~pt~aKa~GnYlNS~ 162 (302)
T TIGR01122 144 APNTIPTRAKAGGNYLNSI 162 (302)
T ss_pred CCCCCCHHHHHHHCCHHHH
T ss_conf 7877762255551317789
No 221
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit; InterPro: IPR011883 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=25.70 E-value=31 Score=13.47 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=53.3
Q ss_pred CCCCC-CCCCHHHEECCCCHHHHHHH-HHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 76636-45325220000035799999-99999999719999992878981399868321100599889998999887542
Q gi|254780451|r 79 ESEVS-YRFSRVLMQDFTGVPAVVDL-AAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRN 156 (896)
Q Consensus 79 ~~ei~-f~p~Rv~~qD~Tg~pa~vdl-aamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~g~~~a~~~n~~~e~~rN 156 (896)
+.-|. |-|. |.|=||+--+ .+.|+|+.-+|+- +.|-|.+..|=.=-.| +=+++|
T Consensus 26 G~~v~s~tPT------ySGCPA~~~i~~~i~~A~~~~GW~-----~~VeV~~~L~P~WTTd-wITe~a------------ 81 (152)
T TIGR02159 26 GVVVKSFTPT------YSGCPALEVIRQDIRDALRALGWV-----EEVEVKTSLDPAWTTD-WITEDA------------ 81 (152)
T ss_pred CEEEEEEECC------CCCCHHHHHHHHHHHHHHHHCCCC-----CCEEEEEEECCCCCCC-CCCCHH------------
T ss_conf 4798887458------777236899999999999747897-----5115887718987840-027003------------
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHH
Q ss_conf 6789999877421488078608876216778986335113103688617983013206887644452012
Q gi|254780451|r 157 EERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGI 226 (896)
Q Consensus 157 ~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~ 226 (896)
+|| .+.++|-||+.--+|-| |+++.... ..+..| =+.=-||.+.+-||.
T Consensus 82 re~----------Lr~yGIAPP~~~~~~~~-----s~~l~~~~---~~v~CP---RCgS~~T~~~s~FG~ 130 (152)
T TIGR02159 82 REK----------LREYGIAPPAGAEVVGV-----SLVLSLEP---PSVQCP---RCGSADTTITSEFGP 130 (152)
T ss_pred HHH----------HHHCCCCCCCCCCCCCC-----EEECCCCC---CCCCCC---CCCCCCEEEECCCCC
T ss_conf 688----------88508874876674631-----00012468---777888---877521133303433
No 222
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=25.50 E-value=38 Score=12.88 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHH-HHHHHHCCCCHHHHH
Q ss_conf 6443688999999984102212127999615500178756321200010037203775199899-999986399988999
Q gi|254780451|r 263 EGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT-IDYLRLSGRSNSRVD 341 (896)
Q Consensus 263 ~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T-~~YL~~tGR~~~~v~ 341 (896)
++|...||.-.....|...+-.|+..+..|| +.||.+|-+.+ ++-..|-...+.++++.. .+.|+..|-++..+.
T Consensus 167 ~~V~~~DiA~vaa~~L~~~~~~~~~~~ltGp--e~lt~~eiA~~--ls~vlGr~V~y~~v~~~~~~~~l~~~G~p~~~a~ 242 (285)
T TIGR03649 167 PFVSADDIARVAYRALTDKVAPNTDYVVLGP--ELLTYDDVAEI--LSRVLGRKITHVKLTEEELAQRLQSFGMPEDLAR 242 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCEEEEECC--CCCCHHHHHHH--HHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHH
T ss_conf 7355878999999997497768977998688--65799999999--9998799227885999999999987499999999
Q ss_pred H
Q ss_conf 9
Q gi|254780451|r 342 L 342 (896)
Q Consensus 342 l 342 (896)
.
T Consensus 243 ~ 243 (285)
T TIGR03649 243 M 243 (285)
T ss_pred H
T ss_conf 9
No 223
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=25.34 E-value=38 Score=12.86 Aligned_cols=11 Identities=18% Similarity=0.444 Sum_probs=7.5
Q ss_pred CCHHHHHHHHH
Q ss_conf 88578888876
Q gi|254780451|r 592 PKDSEIQSFVN 602 (896)
Q Consensus 592 Ps~~Ei~~~~~ 602 (896)
|+.+++++..+
T Consensus 374 P~ee~l~~~~e 384 (395)
T PRK11921 374 PDDEALDRCRS 384 (395)
T ss_pred CCHHHHHHHHH
T ss_conf 99899999999
No 224
>TIGR00777 ahpD alkylhydroperoxidase, AhpD family; InterPro: IPR004674 Members of this family are alkylhydroperoxidases, which catalyze the reduction of peroxides to their corresponding alcohols via oxidation of cysteine residues. In these alkylhydroperoxidases, the cysteines are located in a conserved -CXXC- motif located towards the COOH terminus. In Mycobacterium tuberculosis, two non-homologous alkylhydroperoxidases, AhpD and AhpC, are found in the same operon.; GO: 0004601 peroxidase activity.
Probab=25.30 E-value=21 Score=14.73 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=15.0
Q ss_pred CCCCEEEEEECCCCCCHHCCC
Q ss_conf 863069999803143012265
Q gi|254780451|r 362 VAFTKKMKLDLGNVSPSVAGP 382 (896)
Q Consensus 362 a~Y~~vieiDLs~ieP~VAgP 382 (896)
|+|.+-+.+||+.|.-.=.-|
T Consensus 10 PdYAkDlklNL~s~~~~s~Ld 30 (178)
T TIGR00777 10 PDYAKDLKLNLASVVDDSALD 30 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCCC
T ss_conf 456788855577651587778
No 225
>pfam09818 ABC_ATPase Predicted ATPase of the ABC class. Members of this family include various bacterial predicted ABC class ATPases.
Probab=25.30 E-value=38 Score=12.85 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=16.8
Q ss_pred EEEHHH-HHHHHHHCCCCEEEECC
Q ss_conf 873799-99989981998899946
Q gi|254780451|r 753 ELFIYD-AAMRYKVDQVPLVVFAG 775 (896)
Q Consensus 753 ~~~iyd-aA~~Y~~~~~plVViAG 775 (896)
+.++-| +..-|++.|+..|+|+|
T Consensus 372 ITPfvdrvr~L~~~~GVStilV~G 395 (447)
T pfam09818 372 ITPFVDRVRSLYDDLGVSTILVVG 395 (447)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 760899999999862954999956
No 226
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific; InterPro: IPR005852 Phosphoglucomutase, alpha-D-glucose phosphate-specific () links the anaerobic or aerobic glycolysis of glucose-6-phosphate and glucose-1-phosphate produced by various glycan phosphorylases by catalysing the transfer of a phosphate group between C-1 and C-6 of glucose . Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; GO: 0004614 phosphoglucomutase activity, 0005975 carbohydrate metabolic process.
Probab=25.19 E-value=10 Score=17.10 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=6.7
Q ss_pred CCHHHCCCCCCCC
Q ss_conf 8712201557877
Q gi|254780451|r 620 GDSSWWNIEVPES 632 (896)
Q Consensus 620 g~~~w~~l~~~~~ 632 (896)
|++.++.|+++-.
T Consensus 450 G~p~Y~Ri~A~A~ 462 (553)
T TIGR01132 450 GDPIYARIDAPAT 462 (553)
T ss_pred CCCCEECCCCCCC
T ss_conf 8830001024589
No 227
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=25.11 E-value=36 Score=13.06 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=18.7
Q ss_pred CHHHCCCCCCEEEEEECCCHHHCCCCHH
Q ss_conf 9999287898139986832110059988
Q gi|254780451|r 116 DPQNINPLVPVDLVIDHSLIVDYSGNKD 143 (896)
Q Consensus 116 dp~~inp~vp~dlviDHsv~vd~~g~~~ 143 (896)
+++..+|.+-|+|= |-|=.+.-|-.++
T Consensus 79 ~A~~lDPAC~V~L~-dg~~PI~lWhDp~ 105 (499)
T TIGR02733 79 EAKILDPACAVYLP-DGSEPINLWHDPE 105 (499)
T ss_pred CCCCCCCCCEEECC-CCCCCCCCCCCHH
T ss_conf 88406883367778-7951100235807
No 228
>PRK13788 adenylosuccinate synthetase; Provisional
Probab=25.03 E-value=39 Score=12.82 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCHHHH
Q ss_conf 322421277768830221
Q gi|254780451|r 503 GCTTCIGNSGALKKEISE 520 (896)
Q Consensus 503 GCg~CiGnsG~l~~~i~~ 520 (896)
+-+|+.| +||+|-++.+
T Consensus 257 AYtTRVG-~GPFPTEl~~ 273 (404)
T PRK13788 257 AFNTRVG-HGPFPTEVQG 273 (404)
T ss_pred EEECCCC-CCCCCCCCCC
T ss_conf 8742326-8889865350
No 229
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=24.83 E-value=39 Score=12.79 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=31.0
Q ss_pred CCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHH
Q ss_conf 3645325220000035799999999999997199999928789813998683211
Q gi|254780451|r 82 VSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIV 136 (896)
Q Consensus 82 i~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~v 136 (896)
....|.+++.=-||--.|- -||+-+.++-+.+.... ..+..=||+.+
T Consensus 43 ~~v~p~~Il~vTFTnkAA~----em~~Rl~~~~~~~~~~~----~~v~TfHs~~~ 89 (655)
T COG0210 43 GGVDPEQILAITFTNKAAA----EMRERLLKLLGLPAAEG----LTVGTFHSFAL 89 (655)
T ss_pred CCCCHHHEEEEEEEHHHHH----HHHHHHHHHHCCCCCCC----EEEEEECHHHH
T ss_conf 8957577177896769999----99999998738554465----39998346779
No 230
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=24.63 E-value=39 Score=12.77 Aligned_cols=81 Identities=16% Similarity=0.158 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHCC---C-CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 119999998874048---6-657999999986123554577766364532522000003579999999999999719999
Q gi|254780451|r 42 CSMKVLLENLLRFED---G-CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDP 117 (896)
Q Consensus 42 ~s~rillEn~~R~~~---~-~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp 117 (896)
.|+|-||..+.++-- . ....-+.+++++.=-+...++ .=|.+.| -...-+.|...+ .+|-.++.+
T Consensus 4 vslk~lL~~A~~~~yAV~afNv~n~e~~~avi~AAee~~sP-vIlq~s~--~~~~~~~g~~~~---~~~~~~~~~----- 72 (286)
T PRK08610 4 VSMKEMLIDAKENGYAVGQYNINNLEFTQAILEASQEENAP-VILGVSE--GAARYMSGFYTI---VKMVEGLMH----- 72 (286)
T ss_pred CCHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHHCCC-EEEEECC--CHHHHCCCHHHH---HHHHHHHHH-----
T ss_conf 46899999999889179987669899999999999996879-9999176--688765768899---999999999-----
Q ss_pred HHCCCCCCEEEEEECCC
Q ss_conf 99287898139986832
Q gi|254780451|r 118 QNINPLVPVDLVIDHSL 134 (896)
Q Consensus 118 ~~inp~vp~dlviDHsv 134 (896)
.-+-.|||-||.||.-
T Consensus 73 -~~~a~VPV~lHLDH~~ 88 (286)
T PRK08610 73 -DLNITIPVAIHLDHGS 88 (286)
T ss_pred -HHCCCCCEEEECCCCC
T ss_conf -8379988899898999
No 231
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.59 E-value=25 Score=14.24 Aligned_cols=31 Identities=13% Similarity=0.026 Sum_probs=16.0
Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHH
Q ss_conf 999889864987586730797016189999999
Q gi|254780451|r 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV 484 (896)
Q Consensus 452 llAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~ 484 (896)
-+++..++.|+++-.- |.=+|+...+-+.+.
T Consensus 29 ~~~~al~~gGi~~iEi--Tl~t~~a~~~I~~l~ 59 (210)
T PRK07455 29 QMAEAVAAGGMRLIEI--TWNSDQPAELISQLR 59 (210)
T ss_pred HHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHH
T ss_conf 9999999879988999--689988999999999
No 232
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=24.48 E-value=24 Score=14.33 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=14.5
Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH
Q ss_conf 9998898649875867307970161899999998
Q gi|254780451|r 452 LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQ 485 (896)
Q Consensus 452 llAkkAv~~Glkv~p~Vkt~l~PGS~~V~~~L~~ 485 (896)
-+++..++.|+++-.- |.=+|++..+-+.+.+
T Consensus 24 ~~~~al~~~Gi~~iEi--Tl~t~~a~~~I~~l~~ 55 (196)
T pfam01081 24 PLAEALAAGGIRVLEV--TLRTPCALDAIRLLRK 55 (196)
T ss_pred HHHHHHHHCCCCEEEE--ECCCHHHHHHHHHHHH
T ss_conf 9999999879988999--4798279999999996
No 233
>PRK09354 recA recombinase A; Provisional
Probab=24.36 E-value=40 Score=12.73 Aligned_cols=55 Identities=27% Similarity=0.433 Sum_probs=31.2
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCC-CCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 778644368899999998410221-21279996155001787563212000100372037751
Q gi|254780451|r 260 SLQEGVTATDLVLTITQMLRKEGV-VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFP 321 (896)
Q Consensus 260 ~L~~gVtakDiiL~i~~~Lr~~Gv-vgk~vEf~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp 321 (896)
..+-|.-+=|++|-+ -|. .|+++|+||+--..=|.-.-.+|++ +-..|.+|.||-
T Consensus 40 ~isTGsl~LD~aLGi------GG~P~GRivEi~G~esSGKTtlal~~iae-aQk~Gg~~a~iD 95 (350)
T PRK09354 40 TISTGSLALDIALGI------GGLPKGRIVEIYGPESSGKTTLALHAIAE-AQKAGGTAAFID 95 (350)
T ss_pred EECCCCHHHHHHHCC------CCCCCCCEEEEECCCCCCHHHHHHHHHHH-HHHCCCCEEEEE
T ss_conf 544771789998758------99678708999889877799999999999-997599479996
No 234
>pfam10863 DUF2702 Protein of unknown function (DUF2702). This eukaryotic family of proteins has no known function.
Probab=24.35 E-value=25 Score=14.21 Aligned_cols=17 Identities=35% Similarity=0.643 Sum_probs=9.1
Q ss_pred HCCCEEEECCCCCCHHH
Q ss_conf 14880786088762167
Q gi|254780451|r 169 SFKNFRVVPPGTGICHQ 185 (896)
Q Consensus 169 ~f~~~~v~pPG~GI~HQ 185 (896)
+|-++.|||+|+|..|.
T Consensus 55 sF~~LPVI~~GSgLs~~ 71 (142)
T pfam10863 55 SFLDLPVVQIGSGLSFD 71 (142)
T ss_pred HHHCCCCCCCCCCCCCC
T ss_conf 67268601578886744
No 235
>pfam07597 DUF1560 Protein of unknown function (DUF1560). Small family of short hypothetical proteins in Rhodopirellula baltica.
Probab=24.23 E-value=23 Score=14.40 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=23.3
Q ss_pred CCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECC
Q ss_conf 212777688302210113663587863367666654685433100059
Q gi|254780451|r 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLS 554 (896)
Q Consensus 507 CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaS 554 (896)
|+||.|-|.|.|-..- .-+. -|-||.. ||..+-.-.-|
T Consensus 1 cvgn~g~l~pni~~~r---srwe------crrfeak-hplsknisvrs 38 (51)
T pfam07597 1 CVGNLGFLHPNIFAKR---SRWE------CRRFEAK-HPLSKNISVRS 38 (51)
T ss_pred CCCCCCCCCCHHHHHH---HHHH------HHHHHCC-CCCCCCCCEEE
T ss_conf 9553345461565213---1454------3210025-88656641455
No 236
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=24.03 E-value=40 Score=12.71 Aligned_cols=64 Identities=20% Similarity=0.120 Sum_probs=39.5
Q ss_pred HHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 99999707751411672899999767786443688999999984102212127999615500178756321200010037
Q gi|254780451|r 235 EAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYG 314 (896)
Q Consensus 235 eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaNMa~E~G 314 (896)
|....++.+ +.++|=++ .-.-.||+||..+++++. +=|.|..-++|+.-. .|-+-|
T Consensus 50 dv~~~l~~~--~~~iPv~v--~~~y~lP~~v~~~tLVIa--------------vSySGnTeETL~a~~------~A~~rg 105 (328)
T PRK08674 50 DLLRSLLLD--EWKKPVFV--VRDYFLPAFVDRKTLVIA--------------VSYSGNTEETLSAVE------QAKKRG 105 (328)
T ss_pred HHHHHHHHC--CCCCCEEE--ECCCCCCCCCCCCCEEEE--------------ECCCCCCHHHHHHHH------HHHHCC
T ss_conf 999999844--79986798--558879986588857999--------------828999779999999------999759
Q ss_pred CCEEEECC
Q ss_conf 20377519
Q gi|254780451|r 315 ATCGFFPV 322 (896)
Q Consensus 315 At~gifp~ 322 (896)
|+.-.+-.
T Consensus 106 a~vi~Its 113 (328)
T PRK08674 106 AKIIAITS 113 (328)
T ss_pred CCEEEEEC
T ss_conf 95899948
No 237
>pfam02861 Clp_N Clp amino terminal domain. This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site.
Probab=24.00 E-value=40 Score=12.71 Aligned_cols=34 Identities=26% Similarity=0.223 Sum_probs=24.4
Q ss_pred CCCCHHHCCCCCCCCCCCCHHHHHHHCCCCHHHH
Q ss_conf 8857233164565554473788898749886563
Q gi|254780451|r 674 DKITTDHISPAGSIPLQSAAASYLRQRGVKEKDF 707 (896)
Q Consensus 674 D~iTTDHISPAG~I~~~spAg~yL~~~Gv~~~df 707 (896)
..|+|+||-=|=---.++++.++|...|+.+..+
T Consensus 11 ~~i~~EHlLlall~~~~~~~~~il~~~g~~~~~l 44 (53)
T pfam02861 11 QYIGTEHLLLALLEEDDGIAARLLKKAGVDLDAL 44 (53)
T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHH
T ss_conf 8534999999998658858999999959899999
No 238
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=23.82 E-value=40 Score=12.66 Aligned_cols=71 Identities=34% Similarity=0.609 Sum_probs=45.5
Q ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECCCCCEEEHHHHHHHHHHCCCCEEEECCCCCC-CCCHHHH
Q ss_conf 145653023577766520360122321257776577224538997873799999899819988999467778-6730799
Q gi|254780451|r 708 NQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYG-NGSSRDW 786 (896)
Q Consensus 708 NsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p~~~~~~iydaA~~Y~~~~~plVViAG~~YG-~GSSRdw 786 (896)
|-||+|.+-..=.+|+| |.|++ |+. ||||| || +|--==-
T Consensus 189 NrYGtg~S~~DGi~RaT-------n~LiA--Gk~-----------------------------vVVaG--YGw~G~G~A~ 228 (422)
T TIGR00936 189 NRYGTGQSTIDGILRAT-------NLLIA--GKT-----------------------------VVVAG--YGWCGKGIAM 228 (422)
T ss_pred CCCCCCCCHHHHHHHHH-------HHHHC--CCE-----------------------------EEEEC--CCCCCHHHHH
T ss_conf 77557630243445665-------57553--887-----------------------------89970--3863078999
Q ss_pred HHHHHHHCCEEEEEECCHH-HHHHHCCCCCEEEEEE
Q ss_conf 9886676170899976478-9888505355232233
Q gi|254780451|r 787 AAKGTRLLGVRSVIAESFE-RIHRSNLIGMGVIPFA 821 (896)
Q Consensus 787 AAkgp~lLGVkAVIA~SFe-RIHrsNLv~mGiLPL~ 821 (896)
+++| +|-++|+.|==. |=-++-.=|+-|.+++
T Consensus 229 r~~G---~GA~V~VtEvdPi~ALeA~MdGF~V~~m~ 261 (422)
T TIGR00936 229 RARG---LGARVIVTEVDPIRALEAAMDGFRVMTME 261 (422)
T ss_pred HHHC---CCCEEEEEEECCHHHHHHCCCCCEEEEHH
T ss_conf 8505---99779998207336887314783341178
No 239
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=23.78 E-value=41 Score=12.66 Aligned_cols=33 Identities=24% Similarity=0.435 Sum_probs=23.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7531046765459998778899988986498758
Q gi|254780451|r 432 IASITSCTNTFNPSVMIGAGLLARNAVRAGLKSK 465 (896)
Q Consensus 432 IAaIgSCTNtSnp~~miaAgllAkkAv~~Glkv~ 465 (896)
|-+||+|..+ .-.-.+||--|-+.|.+.|..+|
T Consensus 4 IVAVTACPtG-IAHTyMAAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTG-IAHTYMAAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEECCCCH-HHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8999458722-87899999999999998498699
No 240
>KOG0174 consensus
Probab=23.67 E-value=36 Score=13.07 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=9.6
Q ss_pred EEEE-EEEECCCCCCC
Q ss_conf 9830-13206887644
Q gi|254780451|r 206 AYPD-TCVGTDSHTTM 220 (896)
Q Consensus 206 a~Pd-tlVGtDSHT~~ 220 (896)
-|-| .++|+||.|+|
T Consensus 26 ~y~gGVvlGaDSRTs~ 41 (224)
T KOG0174 26 EYDGGVVLGADSRTST 41 (224)
T ss_pred EECCCEEEECCCCCCC
T ss_conf 9769489811677540
No 241
>TIGR00784 citMHS citrate transporter; InterPro: IPR014738 This entry consists of known and predicted citrate transporters. It includes two characterised citrate/proton symporters, CitM and CitH, from Bacillus subtilis . Both of these proteins couple the uptake of citrate in complex with a divalent cation to the uptake of protons, but differ in their metal ion specificities. CitM transports citrate in complex with Mg(2+), Ni(2+), Mn(2+), Co(2+), and Zn2(+), while CitH transports citrate in complex with Ca(2+), Ba(2+), and Sr(2+). A third paralog, YraO, exists in B. subtilis, but the function of this protein is not known. .
Probab=23.20 E-value=39 Score=12.74 Aligned_cols=15 Identities=47% Similarity=0.671 Sum_probs=5.6
Q ss_pred EECCHHHHHHHHHHC
Q ss_conf 005978999998516
Q gi|254780451|r 551 YLLSPPLVVAYALAG 565 (896)
Q Consensus 551 yLaSP~lVvA~AiaG 565 (896)
+|.||-..-.|=|-|
T Consensus 388 HllSPLVpST~LLVg 402 (439)
T TIGR00784 388 HLLSPLVPSTYLLVG 402 (439)
T ss_pred HHHCCCHHHHHHHHH
T ss_conf 662530467999999
No 242
>pfam00777 Glyco_transf_29 Glycosyltransferase family 29 (sialyltransferase). Members of this family belong to glycosyltransferase family 29.
Probab=23.08 E-value=42 Score=12.56 Aligned_cols=55 Identities=22% Similarity=0.505 Sum_probs=33.2
Q ss_pred CCCCC--CCCCCCCCC-HHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHH
Q ss_conf 32242--127776883-022101136635878633676666546854331000597899
Q gi|254780451|r 503 GCTTC--IGNSGALKK-EISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLV 558 (896)
Q Consensus 503 GCg~C--iGnsG~l~~-~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lV 558 (896)
-|-.| +||||-|.. .....|...|.|.-.=+.=-++||--+|..+.. .++.|..+
T Consensus 56 ~c~~CAVVGNsGiL~~S~~G~eIDs~D~ViR~N~aP~~gye~DVG~KTt~-r~~np~~~ 113 (268)
T pfam00777 56 PCRRCAVVGNGGILKNSSLGKEIDSHDFVIRCNLAPTKGYEKDVGSKTTL-RTFNPESA 113 (268)
T ss_pred CCCEEEEECCCHHHCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCEE-EEECHHHH
T ss_conf 89804898882786669864011566769981688777640247775227-99784775
No 243
>PRK12361 hypothetical protein; Provisional
Probab=23.03 E-value=42 Score=12.56 Aligned_cols=15 Identities=47% Similarity=0.592 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 778899988986498
Q gi|254780451|r 448 IGAGLLARNAVRAGL 462 (896)
Q Consensus 448 iaAgllAkkAv~~Gl 462 (896)
+.|.-|||+|++.|-
T Consensus 283 ~~a~~LArqAv~~Ga 297 (546)
T PRK12361 283 ISANTLAKQARKAGA 297 (546)
T ss_pred CCHHHHHHHHHHCCC
T ss_conf 899999999997499
No 244
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=22.88 E-value=42 Score=12.54 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=10.4
Q ss_pred CCCCCEEEEEECC
Q ss_conf 8789813998683
Q gi|254780451|r 121 NPLVPVDLVIDHS 133 (896)
Q Consensus 121 np~vp~dlviDHs 133 (896)
+..|||-||.||.
T Consensus 75 ~~~VPV~lHLDH~ 87 (293)
T PRK07315 75 GITVPVAIHLDHG 87 (293)
T ss_pred CCCCCEEEECCCC
T ss_conf 7998889888999
No 245
>KOG0820 consensus
Probab=22.85 E-value=42 Score=12.53 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=18.1
Q ss_pred EECCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHH
Q ss_conf 61550017875632120001003720377519989999998
Q gi|254780451|r 291 FGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR 331 (896)
Q Consensus 291 ~G~gi~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~ 331 (896)
.|||.-+|++. -.|.|+|.--...|-....-|.
T Consensus 65 vGPGTGnLT~~--------lLe~~kkVvA~E~Dprmvael~ 97 (315)
T KOG0820 65 VGPGTGNLTVK--------LLEAGKKVVAVEIDPRMVAELE 97 (315)
T ss_pred ECCCCCHHHHH--------HHHHCCEEEEEECCCHHHHHHH
T ss_conf 57987789999--------9972084899940807899999
No 246
>pfam06163 DUF977 Bacterial protein of unknown function (DUF977). This family consists of several hypothetical bacterial proteins from Escherichia coli and Salmonella typhi. The function of this family is unknown.
Probab=22.59 E-value=34 Score=13.21 Aligned_cols=16 Identities=31% Similarity=0.887 Sum_probs=11.5
Q ss_pred CEEEECCCHHHHHHHH
Q ss_conf 0377519989999998
Q gi|254780451|r 316 TCGFFPVDRGTIDYLR 331 (896)
Q Consensus 316 t~gifp~De~T~~YL~ 331 (896)
.||+||..+.-++|-+
T Consensus 61 r~GiFpSEqA~~~W~~ 76 (127)
T pfam06163 61 RCGIFRSEQAVIDWQK 76 (127)
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 7576853999999998
No 247
>COG4811 Predicted membrane protein [Function unknown]
Probab=22.50 E-value=43 Score=12.49 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=18.2
Q ss_pred EEECCHHHHHHHCCCCCEEEEEECCC
Q ss_conf 99764789888505355232233178
Q gi|254780451|r 799 VIAESFERIHRSNLIGMGVIPFAFGK 824 (896)
Q Consensus 799 VIA~SFeRIHrsNLv~mGiLPL~F~~ 824 (896)
-+-=-|+|||+-||---|||-.+...
T Consensus 103 n~~~~YarI~~mNLsEdgvLVi~l~~ 128 (152)
T COG4811 103 NVFIEYARIKAMNLSEDGVLVIQLEQ 128 (152)
T ss_pred EEEEEHHHHHHCCCCCCCEEEEEECC
T ss_conf 88776334543176758679999534
No 248
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=22.38 E-value=43 Score=12.47 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=25.3
Q ss_pred ECCCHHHHHHHHHCCCHH-HHHHHCCEECCCCCCCCC
Q ss_conf 016189999999858857-777505302055322421
Q gi|254780451|r 473 APGSQVSYEYLVQAGLVE-YLEALGFSLVGFGCTTCI 508 (896)
Q Consensus 473 ~PGS~~V~~~L~~~Gll~-~L~~aGf~i~~~GCg~Ci 508 (896)
.=....|..|+++.+|-- .|-+-||.-+ ||-||-
T Consensus 178 ~Ws~~dv~~Yi~~~~LP~npL~~~GY~SI--GC~pCT 212 (243)
T PRK02090 178 DWTNEDVWAYLKEHDLPYHPLVDQGYPSI--GCEPCT 212 (243)
T ss_pred HCCHHHHHHHHHHCCCCCCCHHHCCCCCC--CCCCCC
T ss_conf 19999999999985999883244599985--862779
No 249
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=22.29 E-value=43 Score=12.46 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHCCC----CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 1199999988740486----657999999986123554577766364532522000003579999999999999719999
Q gi|254780451|r 42 CSMKVLLENLLRFEDG----CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDP 117 (896)
Q Consensus 42 ~s~rillEn~~R~~~~----~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp 117 (896)
.++|=||..+.++-=. .....+.+++++.=-+....+ .=|.+.|.. ++|.|.+.+-.++...-.+ .
T Consensus 10 V~~k~lL~~A~~~~yAV~AfNv~~~e~~~Avi~AAee~~sP-vIlq~s~g~---~~~~~~~~l~~~~~~~~~~------a 79 (321)
T PRK07084 10 VNTRELFAKAVKGGYAIPAYNFNNLEQLQAIIMACVETKSP-VILQVSKGA---RSYANATLLRYMAQGAVEY------A 79 (321)
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCC-EEEEECCCH---HHHCCHHHHHHHHHHHHHH------H
T ss_conf 32999999999889379987779999999999999997999-899927487---7658837899999999999------9
Q ss_pred HHCCCCCCEEEEEECC
Q ss_conf 9928789813998683
Q gi|254780451|r 118 QNINPLVPVDLVIDHS 133 (896)
Q Consensus 118 ~~inp~vp~dlviDHs 133 (896)
...+..|||-||.||.
T Consensus 80 ~~~~~~VPV~lHLDHg 95 (321)
T PRK07084 80 KELGSPIPIVLHLDHG 95 (321)
T ss_pred HHHCCCCCEEEECCCC
T ss_conf 9858997789989999
No 250
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=22.29 E-value=43 Score=12.46 Aligned_cols=55 Identities=31% Similarity=0.451 Sum_probs=34.5
Q ss_pred HHCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCEEEE-CCCCCCHHHHHHHHHCCCEEEE
Q ss_conf 10059988999899-988754267899998774214880786-0887621677898633511310
Q gi|254780451|r 136 VDYSGNKDAVTRNK-DLEYQRNEERYRFLKWGQKSFKNFRVV-PPGTGICHQINLEYLGQSVWTK 198 (896)
Q Consensus 136 vd~~g~~~a~~~n~-~~e~~rN~Ery~Flkwa~~~f~~~~v~-pPG~GI~HQvnlE~la~vv~~~ 198 (896)
.|..|..+|-+.=. -.+|=+|-++|+= -+.+-=+++-.+ |||+|=-. ||+-|-.+
T Consensus 152 ~DVaG~~eaK~el~EiVdfLk~P~k~~~--~Gak~PkGvLL~GPPGtGKTl------LAkAvAgE 208 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQK--LGGKIPKGVLMVGPPGTGKTL------LAKAIAGE 208 (644)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCHHHHHH--CCCCCCCCEEEECCCCCCHHH------HHHHHHCC
T ss_conf 0408978999999999998129799997--499799851777989987789------99998645
No 251
>KOG2012 consensus
Probab=22.19 E-value=40 Score=12.67 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=50.6
Q ss_pred CCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCC
Q ss_conf 277768830221011366358786336766665468543310005978999998516---12223100235548888632
Q gi|254780451|r 509 GNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG---NVRKNLIKDPIGEDQQGSPV 585 (896)
Q Consensus 509 GnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA~AiaG---~I~~d~~~dplg~~~~G~~v 585 (896)
|++|.+.=..-+.|.+-+| ||-|-=|-+.-.+ +-| .|+|.|..+ .++++...+..| +.-+.|
T Consensus 457 g~~g~ItVTDmD~IEkSNL--------nRQFLFR~~dVgk---~KS--e~AA~A~~~mNp~l~I~a~~~rvg--peTE~I 521 (1013)
T KOG2012 457 GNSGKITVTDMDHIEKSNL--------NRQFLFRPWDVGK---PKS--EVAAAAARGMNPDLNIIALQNRVG--PETEHI 521 (1013)
T ss_pred CCCCCEEEECCCHHHHCCC--------CCEEECCCCCCCC---HHH--HHHHHHHHHCCCCCEEEEHHHCCC--CCCCCC
T ss_conf 7987268845116643154--------3101024544685---077--899999974297715521320468--652131
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 001568885788888764158321000
Q gi|254780451|r 586 YLRDIWPKDSEIQSFVNKYVTCDLYKK 612 (896)
Q Consensus 586 ~L~DiwPs~~Ei~~~~~~~v~~~~f~~ 612 (896)
|=.+.|-+-+-|...+.. |+..+|..
T Consensus 522 f~D~Ff~~ld~VanALDN-VdAR~YvD 547 (1013)
T KOG2012 522 FNDEFFENLDGVANALDN-VDARRYVD 547 (1013)
T ss_pred CCHHHHHHHHHHHHHHCC-HHHHHHHH
T ss_conf 446677665788775302-24565412
No 252
>pfam01520 Amidase_3 N-acetylmuramoyl-L-alanine amidase. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls.
Probab=22.16 E-value=43 Score=12.44 Aligned_cols=43 Identities=30% Similarity=0.349 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHH----HCCCCCCCEEEEEEECCCCCCCHHHHHHHHC
Q ss_conf 644368899999998----4102212127999615500178756321200
Q gi|254780451|r 263 EGVTATDLVLTITQM----LRKEGVVSKFVEFFGSGFESMVLADRATIAN 308 (896)
Q Consensus 263 ~gVtakDiiL~i~~~----Lr~~Gvvgk~vEf~G~gi~~LS~~dRaTIaN 308 (896)
.|++-||+.|.|... |.+.| .-|-..-+.-..+|+.+|..++|
T Consensus 18 ~g~~E~~~nl~ia~~l~~~L~~~G---~~V~ltR~~d~~~~l~~R~~~an 64 (172)
T pfam01520 18 NGLREKDLNLDIALRLAKLLEAAG---VEVVLTRDDDSFVSLSERANLAN 64 (172)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCC---CEEEEECCCCCCCCHHHHHHHHH
T ss_conf 996389999999999999988769---86999469875340789999986
No 253
>TIGR00223 panD aspartate 1-decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process.
Probab=22.14 E-value=34 Score=13.19 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=22.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHH-----CCCCCCCCCEEEEECCC
Q ss_conf 531046765459998778899988986-----49875867307970161
Q gi|254780451|r 433 ASITSCTNTFNPSVMIGAGLLARNAVR-----AGLKSKPWVKTSCAPGS 476 (896)
Q Consensus 433 AaIgSCTNtSnp~~miaAgllAkkAv~-----~Glkv~p~Vkt~l~PGS 476 (896)
-+|||||= ..+++-+||++--.+|+ -|.| ..|.+.||-
T Consensus 21 nY~GSitI--DeDl~daag~lenekv~IvnvnNG~R----fsTY~I~gk 63 (127)
T TIGR00223 21 NYVGSITI--DEDLLDAAGLLENEKVDIVNVNNGKR----FSTYVIAGK 63 (127)
T ss_pred CEEEEEEH--HHHHHHHHHCCCCCEEEEEECCCCCC----EEEEEECCC
T ss_conf 43653325--46799985128998489986689971----234665142
No 254
>PRK12857 putative aldolase; Reviewed
Probab=22.13 E-value=42 Score=12.52 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHCCC----CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 1199999988740486----657999999986123554577766364532522000003579999999999999719999
Q gi|254780451|r 42 CSMKVLLENLLRFEDG----CTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDP 117 (896)
Q Consensus 42 ~s~rillEn~~R~~~~----~~~~~~~~~~~~~w~~~~~~~~~ei~f~p~Rv~~qD~Tg~pa~vdlaamR~~~~~~g~dp 117 (896)
.|+|=||..+.++--. ....-+.+++++.=-+..+++ .=|.+.|..+ ++.|...+..+ +|.+..+
T Consensus 4 v~~k~lL~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sP-vIlq~s~~~~---~~~g~~~~~~~--~~~~a~~----- 72 (284)
T PRK12857 4 VTVAELLEKAEKGGYAVGAFNCNNMEIVQAIVAAAEAERSP-VIIQASQGAI---KYAGIEYISAM--VRTAAEK----- 72 (284)
T ss_pred CCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCC-EEEECCCCHH---HHCCHHHHHHH--HHHHHHH-----
T ss_conf 06999999999889179987889899999999999997899-8999171477---65799999999--9999997-----
Q ss_pred HHCCCCCCEEEEEECCC
Q ss_conf 99287898139986832
Q gi|254780451|r 118 QNINPLVPVDLVIDHSL 134 (896)
Q Consensus 118 ~~inp~vp~dlviDHsv 134 (896)
..|||-||.||.-
T Consensus 73 ----~~VpV~lHLDH~~ 85 (284)
T PRK12857 73 ----ASVPVALHLDHGT 85 (284)
T ss_pred ----CCCCEEEECCCCC
T ss_conf ----6998999679889
No 255
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=21.98 E-value=44 Score=12.41 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=19.4
Q ss_pred CCCCCCC-----CCCCCCCEEECCHHHHHHHHHH--CCCCCCCCCCC
Q ss_conf 7666654-----6854331000597899999851--61222310023
Q gi|254780451|r 536 NRNFEGR-----ISPDVEANYLLSPPLVVAYALA--GNVRKNLIKDP 575 (896)
Q Consensus 536 NRNFeGR-----~~p~~~~~yLaSP~lVvA~Aia--G~I~~d~~~dp 575 (896)
|+||.-. .||+-...|=+|-+-.+|.-++ -+++|-...|+
T Consensus 235 ~~~~~p~~~F~~l~~D~ni~~~~ss~~~ma~l~~~~d~~d~~aanD~ 281 (524)
T COG0033 235 NQNVDPTPDFMGLDPDGNIRMDCSSPCAMAGLLRLRDKYDFAAANDG 281 (524)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 05766573125879998875723748899976432202342125688
No 256
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative; InterPro: IPR010088 This entry represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulphate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation..
Probab=21.96 E-value=44 Score=12.41 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=35.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE--CCCCCCHHCCCCCCCC
Q ss_conf 9999986399988999999874641023676766788630699998--0314301226566564
Q gi|254780451|r 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLD--LGNVSPSVAGPRRPES 387 (896)
Q Consensus 326 T~~YL~~tGR~~~~v~lve~Y~ka~~l~~~~~~d~~a~Y~~vieiD--Ls~ieP~VAgP~~P~d 387 (896)
-+.|+..+|...+-...+++|+... + +|+| .-.|.|.+--|..|.+
T Consensus 4 llAy~slSGNT~eVA~~I~~~l~~~----------G------~eVDW~~~r~~~La~~pldPe~ 51 (145)
T TIGR01754 4 LLAYLSLSGNTKEVADIIRDILEKD----------G------HEVDWVEFRISTLADAPLDPED 51 (145)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHC----------C------CEEEEEEECCHHHHCCCCCCCC
T ss_conf 6535414877789999999999847----------9------7767664000464246789986
No 257
>pfam04397 LytTR LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.
Probab=21.95 E-value=12 Score=16.61 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=10.8
Q ss_pred CCHHHHHHHCCCCCEE
Q ss_conf 6478988850535523
Q gi|254780451|r 802 ESFERIHRSNLIGMGV 817 (896)
Q Consensus 802 ~SFeRIHrsNLv~mGi 817 (896)
..|-|||||-||++.=
T Consensus 46 ~~F~rihRs~iVN~~~ 61 (98)
T pfam04397 46 DGFFRCHRSYLVNLNK 61 (98)
T ss_pred CCEEEECCEEEEEHHH
T ss_conf 7688750368995586
No 258
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase; InterPro: IPR010196 This entry describes the enzyme o-succinylbenzoic acid synthetase (MenC) that is involved in one of the steps of the menaquinone biosynthesis pathway. The biosynthesis of menaquinone has been studied most in E. colii . 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) is dehydrated by MenC to give the aromatic compound O-succinylbenzoate (OSB) . MenC, which is a member of the enolase superfamily and x-ray structure has been determined , . Many of the common names of the proteins in this family are incorrectly described as O-succinylbenzoyl-CoA synthase. Members are restricted to bacteria. ; GO: 0000287 magnesium ion binding, 0016836 hydro-lyase activity, 0009234 menaquinone biosynthetic process.
Probab=21.90 E-value=32 Score=13.41 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHCCEEEEEECCHH
Q ss_conf 07999886676170899976478
Q gi|254780451|r 783 SRDWAAKGTRLLGVRSVIAESFE 805 (896)
Q Consensus 783 SRdwAAkgp~lLGVkAVIA~SFe 805 (896)
+|+|+.+.++ ||+.|||-=|||
T Consensus 275 ~~~~~~~a~~-lGl~AV~SS~fE 296 (336)
T TIGR01927 275 LRDLVQKAHR-LGLQAVFSSVFE 296 (336)
T ss_pred HHHHHHHHHH-CCCCHHHHHHHH
T ss_conf 9999998775-686301688999
No 259
>PRK12861 malic enzyme; Reviewed
Probab=21.81 E-value=44 Score=12.39 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=22.5
Q ss_pred HEECCCCHHHHHHHHHHHHHHHHCCCCHHHC
Q ss_conf 2000003579999999999999719999992
Q gi|254780451|r 90 LMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 (896)
Q Consensus 90 ~~qD~Tg~pa~vdlaamR~~~~~~g~dp~~i 120 (896)
++||=---.|++-+|++..++.-.|.+-+.+
T Consensus 158 v~hddqhgtaii~~a~l~nal~~~~k~~~~~ 188 (762)
T PRK12861 158 VFHDDQHGTAITVAAAFINGLKVVGKSIKEV 188 (762)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCHHHE
T ss_conf 2316776089999999999999828756561
No 260
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=21.75 E-value=18 Score=15.21 Aligned_cols=74 Identities=26% Similarity=0.441 Sum_probs=50.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCHHH--HCCCCHHHHHHHHCCCCCEEC
Q ss_conf 880786088762167789863351131036886179830132068876444520123--203434899999707751411
Q gi|254780451|r 171 KNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGIL--GWGVGGIEAEAAMLGCPISML 248 (896)
Q Consensus 171 ~~~~v~pPG~GI~HQvnlE~la~vv~~~~~~~~~~a~PdtlVGtDSHT~~~galG~l--a~GVGg~eaea~mlGqp~~~~ 248 (896)
.++|-+ |=|..+|--|-| +||+. ++|++|+ -+|||-.-|....+|- +-=.
T Consensus 41 ~~lrWv----Gn~NELNaaYAA----------DGYaR-------------~~Gi~alvTTfGVGELSA~NGIAGS-YAE~ 92 (557)
T COG3961 41 PGLRWV----GNANELNAAYAA----------DGYAR-------------LNGISALVTTFGVGELSALNGIAGS-YAEH 92 (557)
T ss_pred CCCEEE----CCCCHHHHHHHH----------CCHHH-------------HCCCEEEEEECCCCHHHHHCCCCHH-HHHC
T ss_conf 996465----463033145652----------00565-------------4484189995033045543030034-5640
Q ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 672899999767786443688999999
Q gi|254780451|r 249 LPEVVGFEVTGSLQEGVTATDLVLTIT 275 (896)
Q Consensus 249 vPevigv~L~G~L~~gVtakDiiL~i~ 275 (896)
+|= |+++|-.+.-+-+++..||=+
T Consensus 93 vpV---vhIvG~P~~~~q~~~~llHHT 116 (557)
T COG3961 93 VPV---VHIVGVPTTSAQASGLLLHHT 116 (557)
T ss_pred CCE---EEEECCCCCCHHHCCCHHEEE
T ss_conf 877---999758982421225111432
No 261
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function; InterPro: IPR012728 This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size..
Probab=21.71 E-value=44 Score=12.38 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=35.7
Q ss_pred HHHHHHHHCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCEEEEEECHHHCCCCCEEEEEEEECCCC
Q ss_conf 998866761708999764789888505355232233178989888198974389972632258997389999818996
Q gi|254780451|r 786 WAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDGT 863 (896)
Q Consensus 786 wAAkgp~lLGVkAVIA~SFeRIHrsNLv~mGiLPL~F~~~~~~~~L~l~G~E~~~i~~~~~l~p~~~v~v~i~~~~g~ 863 (896)
|=+..-|+|||| ||-|+ |.| +-.|+-.+..+|-.-..+.+++-++... -+|+.
T Consensus 612 ~l~~~lr~LG~k---------------iGr~v----~~d-----~~~ltE~dLv~IG~d~tlN~G~~~QtHl-feDRv 664 (719)
T TIGR02353 612 FLPAVLRLLGVK---------------IGRGV----YID-----TTDLTERDLVTIGDDSTLNEGSVIQTHL-FEDRV 664 (719)
T ss_pred HHHHHHHHCCCE---------------ECCCC----EEC-----CCCCCCHHHEEECCCCEECCCCCEECCC-CCCCE
T ss_conf 479999727824---------------55532----226-----7567522203656861246875111140-00675
No 262
>KOG2692 consensus
Probab=21.64 E-value=44 Score=12.37 Aligned_cols=57 Identities=25% Similarity=0.511 Sum_probs=35.1
Q ss_pred CCCCC--CCCCCCCCC-HHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHH
Q ss_conf 32242--127776883-02210113663587863367666654685433100059789999
Q gi|254780451|r 503 GCTTC--IGNSGALKK-EISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVA 560 (896)
Q Consensus 503 GCg~C--iGnsG~l~~-~i~~~i~~~~l~~~sV~SgNRNFeGR~~p~~~~~yLaSP~lVvA 560 (896)
.|-.| +||||.|.. ...+.|.+.|.+-=.=.-=-.+||.-+|..+.. .+..|+-|..
T Consensus 153 ~c~~CAVVGNsG~L~~S~~G~eID~~D~ViR~N~APt~gye~DVGsKTt~-r~~n~~Sv~~ 212 (376)
T KOG2692 153 RCRRCAVVGNSGILLNSRLGREIDSHDFVIRLNLAPTKGYEKDVGSKTTL-RTVNPPSVPT 212 (376)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCEEE-EEECCHHHCC
T ss_conf 66446898675311778778755612389975788665433311564269-9976114103
No 263
>KOG0024 consensus
Probab=21.50 E-value=31 Score=13.50 Aligned_cols=60 Identities=30% Similarity=0.421 Sum_probs=44.9
Q ss_pred EECCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 20688764445201232034348999997077514116728999997677864436889999999841022121279996
Q gi|254780451|r 212 VGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFF 291 (896)
Q Consensus 212 VGtDSHT~~~galG~la~GVGg~eaea~mlGqp~~~~vPevigv~L~G~L~~gVtakDiiL~i~~~Lr~~Gvvgk~vEf~ 291 (896)
-|+|+|-=+.|..|.+= .+-|-++|-+-.| +||=-
T Consensus 42 CGSDvHy~~~G~ig~~v------------------~k~PmvlGHEssG---------------------------iV~ev 76 (354)
T KOG0024 42 CGSDVHYYTHGRIGDFV------------------VKKPMVLGHESSG---------------------------IVEEV 76 (354)
T ss_pred CCCCCHHHCCCCCCCCC------------------CCCCCCCCCCCCC---------------------------EEHHH
T ss_conf 27620302369767521------------------3455121542443---------------------------40553
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCEEEEC
Q ss_conf 155001787563212000100372037751
Q gi|254780451|r 292 GSGFESMVLADRATIANMAPEYGATCGFFP 321 (896)
Q Consensus 292 G~gi~~LS~~dRaTIaNMa~E~GAt~gifp 321 (896)
|+.+++|-+.||- +.|-|..|++..
T Consensus 77 G~~Vk~LkVGDrV-----aiEpg~~c~~cd 101 (354)
T KOG0024 77 GDEVKHLKVGDRV-----AIEPGLPCRDCD 101 (354)
T ss_pred CCCCCCCCCCCEE-----EECCCCCCCCCH
T ss_conf 5664303468847-----864898633335
No 264
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=21.36 E-value=45 Score=12.33 Aligned_cols=64 Identities=22% Similarity=0.256 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHH-HHHHHCCCCCCCCCE--EEECCCHHHHHH
Q ss_conf 443688999999984102212127999615500178756-321200010037203--775199899999
Q gi|254780451|r 264 GVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLAD-RATIANMAPEYGATC--GFFPVDRGTIDY 329 (896)
Q Consensus 264 gVtakDiiL~i~~~Lr~~Gvvgk~vEf~G~gi~~LS~~d-RaTIaNMa~E~GAt~--gifp~De~T~~Y 329 (896)
-.|+-|-++.+-.+. ..| +.-++=+.|+|...=-.+. ++-+-=.++-.|-++ |.|..-..+..=
T Consensus 83 ~tTa~DT~~~~r~~~-~~g-VdlIvfaGGDGTarDVa~av~~~vPvLGipaGvk~~SgvfA~~P~~aa~ 149 (355)
T COG3199 83 RTTAEDTINAVRRMV-ERG-VDLIVFAGGDGTARDVAEAVGADVPVLGIPAGVKNYSGVFALSPEDAAR 149 (355)
T ss_pred CCCHHHHHHHHHHHH-HCC-CEEEEEECCCCCHHHHHHHCCCCCCEEEECCCCCEECCCCCCCHHHHHH
T ss_conf 763799999999998-659-6199995788529999853267886674135650203520148277899
No 265
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=21.36 E-value=45 Score=12.33 Aligned_cols=135 Identities=13% Similarity=0.143 Sum_probs=67.6
Q ss_pred CEEEEECC-CHHHHHHHHHCCCHHHHHHHCCEECCCCCCCCCCC--CCCCCCHHHHHCCCCCEEEEEEECCCCCC-CCCC
Q ss_conf 30797016-18999999985885777750530205532242127--77688302210113663587863367666-6546
Q gi|254780451|r 468 VKTSCAPG-SQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGN--SGALKKEISEVIHQKSLVVAGVLSGNRNF-EGRI 543 (896)
Q Consensus 468 Vkt~l~PG-S~~V~~~L~~~Gll~~L~~aGf~i~~~GCg~CiGn--sG~l~~~i~~~i~~~~l~~~sV~SgNRNF-eGR~ 543 (896)
+|..++.| ..++.+.|++.|+...|.. |.++.......|+-+ +|.+...+...+...+....+++--.-|| .+|-
T Consensus 56 ik~VlVHGgg~qI~~~l~~~gi~~~f~~-G~RvTd~~~l~vv~~vl~g~vn~~lv~~l~~~g~~a~gl~g~dg~~i~A~~ 134 (284)
T CHL00202 56 LKIVVVHGGGPEINFWLKQLNISPKFWN-GIRVTDKVTMEIVEMVLAGKVNKDLVGSINANGGKAVGLCGKDANLIVARA 134 (284)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEC
T ss_conf 9799988996689999997699843628-832188789999999987789999999998569950553125576699835
Q ss_pred CCCCCCEEECCHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 854331000597899999851612223--10023554888863200156888578888876415832
Q gi|254780451|r 544 SPDVEANYLLSPPLVVAYALAGNVRKN--LIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCD 608 (896)
Q Consensus 544 ~p~~~~~yLaSP~lVvA~AiaG~I~~d--~~~dplg~~~~G~~v~L~DiwPs~~Ei~~~~~~~v~~~ 608 (896)
-.....-|...+.-|=+-+|.--++-+ +.--|+|.+++|+...+ ..+++...+...++++
T Consensus 135 ~~~~D~g~vG~V~~Vd~~~I~~lL~~g~IpVIspig~~~~G~~~Nv-----naD~~A~~iA~aL~A~ 196 (284)
T CHL00202 135 SDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNI-----NADVVAGEIAAKLNAE 196 (284)
T ss_pred CCCCCCCCCCCCEEECHHHHHHHHHCCCEEEEECCEECCCCCEEEE-----CHHHHHHHHHHHHCCC
T ss_conf 8987744444412326799999970897599804406799998950-----9999999999986419
No 266
>TIGR01517 ATPase-IIB_Ca calcium-translocating P-type ATPase, PMCA-type; InterPro: IPR006408 This family describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes . In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects . The calcium P-type ATPases have been characterised as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump .; GO: 0005388 calcium-transporting ATPase activity, 0005509 calcium ion binding, 0005524 ATP binding, 0015085 calcium ion transmembrane transporter activity, 0006816 calcium ion transport, 0016020 membrane.
Probab=21.15 E-value=45 Score=12.30 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCC
Q ss_conf 267899998774214880786088762
Q gi|254780451|r 156 NEERYRFLKWGQKSFKNFRVVPPGTGI 182 (896)
Q Consensus 156 N~Ery~Flkwa~~~f~~~~v~pPG~GI 182 (896)
+.-+|+=|..-.+.-..+.|+.=|.-|
T Consensus 142 kelqFR~L~s~~~~~~~i~VIRgG~~~ 168 (885)
T TIGR01517 142 KELQFRELNSRKKEEQKIKVIRGGQEI 168 (885)
T ss_pred HHHHHHHCCHHHHCCCCEEEEECCEEE
T ss_conf 778653000165529618997879278
No 267
>PRK10712 fructose-specific PTS system IIBC component; Provisional
Probab=21.10 E-value=45 Score=12.29 Aligned_cols=32 Identities=31% Similarity=0.700 Sum_probs=19.3
Q ss_pred CCCHHHHHHHC---CEECC--CCCCCCCCCCCCCCCH
Q ss_conf 58857777505---30205--5322421277768830
Q gi|254780451|r 486 AGLVEYLEALG---FSLVG--FGCTTCIGNSGALKKE 517 (896)
Q Consensus 486 ~Gll~~L~~aG---f~i~~--~GCg~CiGnsG~l~~~ 517 (896)
.+|...|..++ ..+++ -||++|+-+.||..+.
T Consensus 377 ~~L~~~L~~m~~~~~ilLG~ilG~MmafDmGGPvNKa 413 (563)
T PRK10712 377 EGLTHWLQTMGTANAVLLGAILGGMMCTDMGGPVNKA 413 (563)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9999999856641289999999988862057851688
No 268
>cd00390 Urease_gamma Urease gamma-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=21.00 E-value=46 Score=12.27 Aligned_cols=52 Identities=29% Similarity=0.259 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHCCCCCC-CCCEEEEECCCHHHHHHHHHCC-CHHHHHHHCCEECCC
Q ss_conf 8778899988986498758-6730797016189999999858-857777505302055
Q gi|254780451|r 447 MIGAGLLARNAVRAGLKSK-PWVKTSCAPGSQVSYEYLVQAG-LVEYLEALGFSLVGF 502 (896)
Q Consensus 447 miaAgllAkkAv~~Glkv~-p~Vkt~l~PGS~~V~~~L~~~G-ll~~L~~aGf~i~~~ 502 (896)
+.-||.||++-.++|+|.+ |-- ++-=|.+|.+.. ++| -...|.+.|.++++.
T Consensus 10 i~~aa~lA~~R~~rGlkLN~pEA---vAlIs~~v~E~a-RdG~svaelm~~g~~~L~~ 63 (96)
T cd00390 10 IFTAAELARKRLARGLKLNYPEA---VALIADEILEGA-RDGKSVAELMSLGKTVLTR 63 (96)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHHH-HCCCCHHHHHHHHHHHCCH
T ss_conf 99999999999983745474999---999999999986-5599899999988765378
No 269
>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=20.91 E-value=46 Score=12.26 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 32242127776883022101136635878633676666546
Q gi|254780451|r 503 GCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI 543 (896)
Q Consensus 503 GCg~CiGnsG~l~~~i~~~i~~~~l~~~sV~SgNRNFeGR~ 543 (896)
||+| +|+-..|+=-+...+.+.+. +.+.||+|.-+=.+
T Consensus 88 GitP-~Glp~~~pv~vD~~v~~~~~--V~igaG~R~~ki~l 125 (139)
T cd04939 88 GITP-VGLPAGWPILVDSAVAERPA--VVIGSGVRRSKLLL 125 (139)
T ss_pred CCCC-CCCCCCCEEEEEHHHHCCCE--EEECCCCCCCEEEE
T ss_conf 6056-56888861998756715987--99845766503788
No 270
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase; InterPro: IPR010237 This family of proteins includes the SDT1/SSM1 gene from yeast, which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily..
Probab=20.81 E-value=46 Score=12.25 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=19.2
Q ss_pred EEEEECCCHH-HHHHHHHCCCHHHHHHH
Q ss_conf 0797016189-99999985885777750
Q gi|254780451|r 469 KTSCAPGSQV-SYEYLVQAGLVEYLEAL 495 (896)
Q Consensus 469 kt~l~PGS~~-V~~~L~~~Gll~~L~~a 495 (896)
|.+++=|++. +..-|.+.|+.+-|+.+
T Consensus 107 k~iFTN~~~~Ha~r~l~~LGi~d~FD~i 134 (205)
T TIGR01993 107 KIIFTNGDRAHARRALNRLGIEDCFDGI 134 (205)
T ss_pred EEEEECCCHHHHHHHHHHCCHHHCCCCE
T ss_conf 6776158789999999864721204642
No 271
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=20.78 E-value=46 Score=12.24 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=13.7
Q ss_pred CCEEEECCCCCCCCCHHHHH
Q ss_conf 98899946777867307999
Q gi|254780451|r 768 VPLVVFAGVEYGNGSSRDWA 787 (896)
Q Consensus 768 ~plVViAG~~YG~GSSRdwA 787 (896)
.+..+++-..||---+|+-.
T Consensus 820 ~~y~~LGTDGFGrSDTR~~L 839 (889)
T TIGR03186 820 RRYVTLGTDGFGRSDTRAAL 839 (889)
T ss_pred CCCEEECCCCCCCCCCHHHH
T ss_conf 98757348888754157999
No 272
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=20.78 E-value=46 Score=12.24 Aligned_cols=76 Identities=25% Similarity=0.444 Sum_probs=39.5
Q ss_pred CCCCCCEEEEECCCH--HHHHHHHHCCCHHHHHHHC--------------CEECCC----CCCCCC---CCCCCCCC---
Q ss_conf 758673079701618--9999999858857777505--------------302055----322421---27776883---
Q gi|254780451|r 463 KSKPWVKTSCAPGSQ--VSYEYLVQAGLVEYLEALG--------------FSLVGF----GCTTCI---GNSGALKK--- 516 (896)
Q Consensus 463 kv~p~Vkt~l~PGS~--~V~~~L~~~Gll~~L~~aG--------------f~i~~~----GCg~Ci---GnsG~l~~--- 516 (896)
+-++|+|.-+--|++ .+++.+.+.+|-..-|+|+ |.|+|. +|.-|- |.-.||++
T Consensus 23 rkP~Wlr~k~p~~~~~~~~k~~~r~~~L~TVCEEA~CPNi~ECw~~~tATFmImG~~CTR~C~FC~V~~g~P~~lD~~EP 102 (306)
T COG0320 23 RKPEWLKVKAPTGSRYQEIKEILRKNGLHTVCEEASCPNIGECWSRGTATFMILGDICTRRCRFCDVKTGRPNPLDPDEP 102 (306)
T ss_pred CCCHHHEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCHHHHHCCCCEEEEECCCHHCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 28576540388883189999999866985252567899768871678337764151322678853147899999997427
Q ss_pred -HHHHHCCCCCEEEEEEECCCCC
Q ss_conf -0221011366358786336766
Q gi|254780451|r 517 -EISEVIHQKSLVVAGVLSGNRN 538 (896)
Q Consensus 517 -~i~~~i~~~~l~~~sV~SgNRN 538 (896)
.+.+++.+-+|.-+-+.|=.|.
T Consensus 103 ~rvAeaV~~mgLkyVViTsVdRD 125 (306)
T COG0320 103 ERVAEAVKDMGLKYVVITSVDRD 125 (306)
T ss_pred HHHHHHHHHHCCCEEEEEEECCC
T ss_conf 89999999838986999753156
No 273
>KOG3865 consensus
Probab=20.76 E-value=46 Score=12.24 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=12.4
Q ss_pred CCEECCCCEEEEEEECCCCCCCC
Q ss_conf 51411672899999767786443
Q gi|254780451|r 244 PISMLLPEVVGFEVTGSLQEGVT 266 (896)
Q Consensus 244 p~~~~vPevigv~L~G~L~~gVt 266 (896)
|.||.+|.-.-.-++=+..++=+
T Consensus 112 PF~f~~pp~~P~SVtLQp~p~D~ 134 (402)
T KOG3865 112 PFTFEFPPNLPCSVTLQPGPEDT 134 (402)
T ss_pred CEEEECCCCCCCEEEECCCCCCC
T ss_conf 56996799997448843388667
No 274
>PRK13784 adenylosuccinate synthetase; Provisional
Probab=20.75 E-value=46 Score=12.24 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCHHHH
Q ss_conf 22421277768830221
Q gi|254780451|r 504 CTTCIGNSGALKKEISE 520 (896)
Q Consensus 504 Cg~CiGnsG~l~~~i~~ 520 (896)
-+|+.| +||.|-+..+
T Consensus 269 Y~TRVG-~GPFPTEl~d 284 (428)
T PRK13784 269 YTTRVG-EGPFPTELFD 284 (428)
T ss_pred EECCCC-CCCCCCCCCC
T ss_conf 104406-8999853355
No 275
>pfam08127 Propeptide_C1 Peptidase family C1 propeptide. This motif is found at the N terminal of some members of the Peptidase_C1 family (pfam00112) and is involved in activation of this peptidase.
Probab=20.69 E-value=46 Score=12.23 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=13.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCEE
Q ss_conf 467778673079998866761708
Q gi|254780451|r 774 AGVEYGNGSSRDWAAKGTRLLGVR 797 (896)
Q Consensus 774 AG~~YG~GSSRdwAAkgp~lLGVk 797 (896)
||.|| .+-|.++. -+||||+
T Consensus 18 AgrNF-~~~~~~~~---k~LlGv~ 37 (41)
T pfam08127 18 AGRNF-ENTSISYI---KRLLGVL 37 (41)
T ss_pred CCCCC-CCCCHHHH---HHHHCCC
T ss_conf 56688-99999999---9980888
No 276
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=20.66 E-value=46 Score=12.23 Aligned_cols=11 Identities=18% Similarity=0.060 Sum_probs=5.5
Q ss_pred EEEECCCCCCC
Q ss_conf 13206887644
Q gi|254780451|r 210 TCVGTDSHTTM 220 (896)
Q Consensus 210 tlVGtDSHT~~ 220 (896)
-+--|-||-.+
T Consensus 83 dlnhtGsHKiN 93 (392)
T PRK04346 83 DLNHTGAHKIN 93 (392)
T ss_pred CCCCCCCCCCH
T ss_conf 67877654301
No 277
>PRK07329 hypothetical protein; Provisional
Probab=20.61 E-value=37 Score=12.91 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=4.1
Q ss_pred EEEEEECCCC
Q ss_conf 6999980314
Q gi|254780451|r 366 KKMKLDLGNV 375 (896)
Q Consensus 366 ~vieiDLs~i 375 (896)
..+|||-|.+
T Consensus 179 ~~iEiNTsgl 188 (246)
T PRK07329 179 LAFELNTKSM 188 (246)
T ss_pred CEEEEECCCC
T ss_conf 8999988666
No 278
>KOG0695 consensus
Probab=20.41 E-value=21 Score=14.77 Aligned_cols=10 Identities=40% Similarity=1.106 Sum_probs=5.2
Q ss_pred HHHCCCCCCC
Q ss_conf 8612355457
Q gi|254780451|r 68 FVKWLDNKGT 77 (896)
Q Consensus 68 ~~~w~~~~~~ 77 (896)
-+.|.+..+.
T Consensus 57 t~kwideegd 66 (593)
T KOG0695 57 TLKWIDEEGD 66 (593)
T ss_pred EEEEECCCCC
T ss_conf 3663337899
No 279
>pfam02316 Mu_DNA_bind Mu DNA-binding domain. This family consists of MuA-transposase and repressor protein CI. These proteins contain homologous DNA-binding domains at their N-termini which compete for the same DNA site within the Mu bacteriophage genome.
Probab=20.33 E-value=47 Score=12.18 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=18.8
Q ss_pred CCCCCC-EEEEEEECCCCCCCHHHHHHHHC
Q ss_conf 022121-27999615500178756321200
Q gi|254780451|r 280 KEGVVS-KFVEFFGSGFESMVLADRATIAN 308 (896)
Q Consensus 280 ~~Gvvg-k~vEf~G~gi~~LS~~dRaTIaN 308 (896)
+.|+-| +.+||+ +++|+.+-|+.|-.
T Consensus 30 r~G~~GG~a~EYh---issLP~e~qa~ll~ 56 (136)
T pfam02316 30 RAGVKGGKAYEYH---VNSLPVETRAALLL 56 (136)
T ss_pred HHCCCCCCCEEEH---HHHCCHHHHHHHHH
T ss_conf 6335887523402---62088999999998
No 280
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=20.12 E-value=48 Score=12.15 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=48.5
Q ss_pred HCCCCCCCCCCCC-HHHHHHH-CCCCHHHH--HHHHHHCCCHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEECC---CCC
Q ss_conf 3164565554473-7888987-49886563--145653023577766520360122321257776577224538---997
Q gi|254780451|r 680 HISPAGSIPLQSA-AASYLRQ-RGVKEKDF--NQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYP---SKE 752 (896)
Q Consensus 680 HISPAG~I~~~sp-Ag~yL~~-~Gv~~~df--NsygsRRgNhevM~RGtFaNirl~N~l~~~~~~egg~T~~~p---~~~ 752 (896)
++.-+|+|-...- |.+-|.+ .||....+ -||.--|-+-.-..|- |.|-+....+-+|-.... ++-
T Consensus 738 qLLGSG~Il~evi~AaeiL~~d~gV~adVWSvTSf~ELrRda~~~eR~--------N~LhP~~~~r~syv~~~L~~~~gP 809 (898)
T PRK13012 738 QLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAAERA--------NLLGPAEEPRVPYVTQCLAGTRGP 809 (898)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHH--------HHCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 999256999999999999998429862067248889999879999999--------840998777777899983799998
Q ss_pred EEE-------HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHH
Q ss_conf 873-------79999989981998899946777867307999
Q gi|254780451|r 753 ELF-------IYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWA 787 (896)
Q Consensus 753 ~~~-------iydaA~~Y~~~~~plVViAG~~YG~GSSRdwA 787 (896)
+.. +.|--..|-. .+..+++-..||---+|+-.
T Consensus 810 vVAaSDYmra~pdqIr~~vp--~~y~vLGTDGFGRSDTR~~L 849 (898)
T PRK13012 810 VIAATDYVRAVPEQIRAFVP--RRYVTLGTDGFGRSDTRAAL 849 (898)
T ss_pred EEEECHHHHHHHHHHHHHCC--CCCEEECCCCCCCCCCHHHH
T ss_conf 79967768764999998468--98656358888754257999
No 281
>pfam11920 DUF3438 Protein of unknown function (DUF3438). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 276 to 307 amino acids in length.
Probab=20.00 E-value=7.5 Score=17.99 Aligned_cols=96 Identities=23% Similarity=0.378 Sum_probs=47.6
Q ss_pred CCCCCCCHHHEECC-CCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCEEEEEECCCHHHCC--CCHHHHHHHHHHHHHH--
Q ss_conf 63645325220000-035799999999999997199999928789813998683211005--9988999899988754--
Q gi|254780451|r 81 EVSYRFSRVLMQDF-TGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYS--GNKDAVTRNKDLEYQR-- 155 (896)
Q Consensus 81 ei~f~p~Rv~~qD~-Tg~pa~vdlaamR~~~~~~g~dp~~inp~vp~dlviDHsv~vd~~--g~~~a~~~n~~~e~~r-- 155 (896)
--+|-|.|+.+||. +|---++|++|.-. + ..-.|+-||.+|.+..+...+. ....+...+...+..+
T Consensus 75 ~e~f~~tRLqlq~~~sGeiIlLDisA~~~-----~---~~~~~lEpVrIv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (285)
T pfam11920 75 SEAFPPTRLQLQDVDSGEVILLDIAATEK-----V---DGQKPLEPVRIVYGDKVATASTSTAAAASSPEQEARKTARPE 146 (285)
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEECCCC-----C---CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 59888615899966999689998762546-----6---789887887998068766555776655455544445567657
Q ss_pred -----HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Q ss_conf -----2678999987742148807860887621677898
Q gi|254780451|r 156 -----NEERYRFLKWGQKSFKNFRVVPPGTGICHQINLE 189 (896)
Q Consensus 156 -----N~Ery~Flkwa~~~f~~~~v~pPG~GI~HQvnlE 189 (896)
-.-||. ||+-|.=.|-++|=.|| +||++.
T Consensus 147 ~p~pV~LTRyA----AQ~LYAPlRtve~~~GV-~~v~~~ 180 (285)
T pfam11920 147 TPVPVVLTRYA----AQSLYAPLRTVEPVPGI-RRVPLR 180 (285)
T ss_pred CCCCEEEHHHH----HHHHCCCCCCCCCCCCE-EECCCC
T ss_conf 86400016898----88521540136789973-542678
Done!