RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] (896 letters) >gnl|CDD|181750 PRK09277, PRK09277, aconitate hydratase; Validated. Length = 888 Score = 1620 bits (4198), Expect = 0.0 Identities = 559/892 (62%), Positives = 667/892 (74%), Gaps = 9/892 (1%) Query: 4 SLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKE 63 S +SF R L VGG Y YYSL EA GL ISRLP S++VLLENLLR EDG +VT+E Sbjct: 3 STDSFKARKTLEVGGKSYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEE 62 Query: 64 QIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123 I A +W K + E+ +R +RV+MQDFTGVPAVVDLAAMRDAI LGGDP INPL Sbjct: 63 DIEALAEW-LPKAKPDREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPL 121 Query: 124 VPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGIC 183 VPVDLVIDHS+ VDY G DA +N +LE++RNEERY+FLKWGQK+F NFRVVPPGTGIC Sbjct: 122 VPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFLKWGQKAFDNFRVVPPGTGIC 181 Query: 184 HQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC 243 HQ+NLEYL VWT+ E+GE +AYPDT VGTDSHTTMIN LG+LGWGVGGIEAEAAMLG Sbjct: 182 HQVNLEYLAPVVWTR-EDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ 240 Query: 244 PISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADR 303 P SML+PEVVG ++TG L EGVTATDLVLT+T+MLRK+GVV KFVEFFG G S+ LADR Sbjct: 241 PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADR 300 Query: 304 ATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVA 363 ATIANMAPEYGATCGFFP+D T+DYLRL+GR +V LVEAY K QG+WR+ + E+ Sbjct: 301 ATIANMAPEYGATCGFFPIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPL--EEPV 358 Query: 364 FTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDF 423 +T ++LDL V PS+AGP+RP+ R+ LS+V +F + + + +G D+ Sbjct: 359 YTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAELGVQGFGLDEAE---EGEDY 415 Query: 424 HLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYL 483 L G V IA+ITSCTNT NPSVMI AGLLA+ AV GLK KPWVKTS APGS+V +YL Sbjct: 416 ELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYL 475 Query: 484 VQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI 543 +AGL+ YLEALGF+LVG+GCTTCIGNSG L EI + I+ LVV VLSGNRNFEGRI Sbjct: 476 EKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRI 535 Query: 544 SPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNK 603 P V+ANYL SPPLVVAYALAG V +L KDP+G D+ G+PVYL+DIWP D EI + V K Sbjct: 536 HPLVKANYLASPPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAK 595 Query: 604 YVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDI 663 V ++++K+Y+DVF+GD W IEVPE Y WD STY+RNPPYFE + + DI Sbjct: 596 AVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGMLAEPGPVRDI 655 Query: 664 CGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRG 723 GAR+L LLGD ITTDHISPAG+I S A YL + GV+ KDFN +G+RRGNHEVMMRG Sbjct: 656 KGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRG 715 Query: 724 TFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSS 783 TF+NIRI N M+ G +GGYT H+P E + IYDAAM+YK + PLVV AG EYG GSS Sbjct: 716 TFANIRIRNEMVP--GVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSS 773 Query: 784 RDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRK 843 RDWAAKGTRLLGV++VIAESFERIHRSNL+GMGV+P F G S K L + G E +I Sbjct: 774 RDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEG 833 Query: 844 LKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895 L+ + P T+ I +DG P++C IDT E+++ +NGGILQ VLR L Sbjct: 834 LEDLKPGATVTVVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRDL 885 >gnl|CDD|183810 PRK12881, acnA, aconitate hydratase; Provisional. Length = 889 Score = 1375 bits (3560), Expect = 0.0 Identities = 521/896 (58%), Positives = 645/896 (71%), Gaps = 14/896 (1%) Query: 4 SLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKE 63 + N VGG Y +YSLP ++RLP S++VLLENLLR EDG VT+E Sbjct: 2 AHNLHKTLKEFDVGGKTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEE 61 Query: 64 QIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123 + A WL + E+ + +RV+MQDFTGVPA+VDLAAMRDA GGDP INPL Sbjct: 62 HLEALANWLPE-RKSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPL 120 Query: 124 VPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGIC 183 VPVDLV+DHS+ VDY G KDA+ N +E+QRN ERY+FLKWG ++F NFRVVPPGTGI Sbjct: 121 VPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFLKWGMQAFDNFRVVPPGTGIM 180 Query: 184 HQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC 243 HQ+NLEYL + V TK ++G+ +AYPDT VGTDSHTTMIN +G+LGWGVGGIEAEA MLG Sbjct: 181 HQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQ 240 Query: 244 PISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADR 303 P+ ML+P+VVG E+TG L+EGVTATDLVLT+T+MLRKEGVV KFVEFFG G S+ L DR Sbjct: 241 PVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDR 300 Query: 304 ATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWR---EDIDYE 360 ATIANMAPEYGAT GFFPVD T+DYLRL+GR+ +++ LVEAY K QG+W + Y Sbjct: 301 ATIANMAPEYGATMGFFPVDEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYT 360 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 + ++LDL V+PS+AGP+RP+ R++L V S+F ++ ++ K Sbjct: 361 RT-----LELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGF--AKKAQTS 413 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 L G VAIA+ITSCTNT NPSV+I AGLLA+ AV GL KPWVKTS APGS+V Sbjct: 414 NGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVT 473 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYL +AGL+ YLE LGF +VG+GCTTCIGNSG L EI + I + LV A VLSGNRNFE Sbjct: 474 EYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFE 533 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRI P+++AN+L SPPLVVAYALAG VR++L+ +P+G+ + G PVYL+DIWP +EI + Sbjct: 534 GRIHPNIKANFLASPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDAL 593 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 V V + ++K Y++VFKG W IE P+ Y WD KSTY+R PP+F+ I Sbjct: 594 VAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIRRPPFFDFSMGPAASI 653 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 + GAR L +LGD ITTDHISPAG+I S A YL++ GV + DFN +G+RRGNHEVM Sbjct: 654 ATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVM 713 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTF+N+RI N M+ GK+GG T+H PS E L IYDAAMRY+ PLVV AG EYG Sbjct: 714 MRGTFANVRIKNLMIP--GKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGT 771 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGTRLLGV++VIAESFERIHRSNL+GMGV+P F G S ++L + G E + Sbjct: 772 GSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFD 831 Query: 841 IRKLKT-ISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895 I L I PRQ+ TL IH +DG+ + VP++C IDT E+++ K GGIL VLRQL Sbjct: 832 IEGLPGEIKPRQDVTLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYVLRQL 887 >gnl|CDD|162307 TIGR01341, aconitase_1, aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes. Length = 876 Score = 1245 bits (3223), Expect = 0.0 Identities = 518/879 (58%), Positives = 655/879 (74%), Gaps = 10/879 (1%) Query: 21 YVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVES 80 Y YYSL E +G + IS+LP S+++LLE++LR DG ++T+E I +KW + ++ Sbjct: 3 YYYYSLKALEESGGK-ISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGE-VADT 60 Query: 81 EVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSG 140 E++++ +RV+MQDFTGVPAVVDLAAMR+A+ LGGDP+ INPLVPVDLVIDHS+ VDY G Sbjct: 61 EIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYG 120 Query: 141 NKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNE 200 + A+ N +LE++RN ERY+FLKW QK+F+NFRVVPPGTGI HQ+NLEYL V+ Sbjct: 121 TEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAEV 180 Query: 201 NGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260 +GE AYPD+ VGTDSHTTMIN LG+LGWGVGGIEAEAAMLG P M +PEV+G ++TG Sbjct: 181 DGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGK 240 Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320 LQEGVTATDLVLT+TQMLRK+GVV KFVEFFG G + LADRATIANMAPEYGATCGFF Sbjct: 241 LQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFF 300 Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380 P+D T+ YLRL+GR V+LVE Y + QG++ + D E+ +T ++LDL +V PSVA Sbjct: 301 PIDDVTLQYLRLTGRDGDHVELVEKYARAQGLFYD--DSEEPRYTDVVELDLSDVEPSVA 358 Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVK----GCDFHLKHGDVAIASIT 436 GP+RP+ R+ L EV + F E+ + K P+K G + L+ G V IA+IT Sbjct: 359 GPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKEPLKKKVNGQNKQLEDGAVVIAAIT 418 Query: 437 SCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALG 496 SCTNT NPSVM+GAGLLA+ AV GLK P+VKTS APGS+V +YL ++GL+ YLE LG Sbjct: 419 SCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEELG 478 Query: 497 FSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPP 556 F+LVG+GCTTCIGNSG L K + E I + L V VLSGNRNFEGRI P V+ NYL SPP Sbjct: 479 FNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPP 538 Query: 557 LVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSD 616 LVVAYALAGN+ NL +PIG D+ G PVYLRDIWP + EI ++VN V +++KK+Y + Sbjct: 539 LVVAYALAGNIDINLYTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYEN 598 Query: 617 VFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKI 676 +F+G+ W +I+ P +TY WDEKSTY+R PP+FE + + E+ DI GARIL LLGD I Sbjct: 599 IFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEEMKQDPEEVEDIKGARILLLLGDSI 658 Query: 677 TTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLG 736 TTDHISPAGSI S A YL++RGV +DFN +G+RRGNHEVMMRGTF+NIRI N M+ Sbjct: 659 TTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMV- 717 Query: 737 EEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796 +GK+GGYT+H+P + +YDAAM+YK + PLVV AG EYG+GSSRDWAAKGT+LLGV Sbjct: 718 -KGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGV 776 Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856 ++VIAESFERIHRSNL+GMGVIP F +G + L + GDE I+I +K + P +E T+ Sbjct: 777 KAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDETIDIDGIKDLKPGKEVTVT 836 Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895 S G + IDT E+++ K+GGILQ VLR+ Sbjct: 837 FTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRKF 875 >gnl|CDD|185440 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional. Length = 898 Score = 1211 bits (3134), Expect = 0.0 Identities = 486/909 (53%), Positives = 626/909 (68%), Gaps = 36/909 (3%) Query: 1 MSRSLNSFN-CRSILSVGGIDYVYYSLPKAEANGLQG--ISRLPCSMKVLLENLLRFEDG 57 S N F L GG Y YYSL + L + +LP S++VLLE+ +R D Sbjct: 9 SSSRPNPFEKVLKTLKDGG-SYKYYSLNE-----LHDPRLKKLPYSIRVLLESAVRNCDE 62 Query: 58 CTVTKEQIHAFVKWLDN--KGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGG 115 VT + + + W +N K E+ ++ +RVL+QDFTGVPAVVDLAAMRDA+ LGG Sbjct: 63 FDVTSKDVENILNWEENSKKQI---EIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGG 119 Query: 116 DPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRV 175 DP INPLVPVDLVIDHS+ VD+S + DA+ N+++E++RN ER+ FLKWG K+FKN + Sbjct: 120 DPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWGSKAFKNLLI 179 Query: 176 VPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIE 235 VPPG+GI HQ+NLEYL + V+ K+ + YPD+ VGTDSHTTMIN LG+LGWGVGGIE Sbjct: 180 VPPGSGIVHQVNLEYLARVVFNKD----GLLYPDSVVGTDSHTTMINGLGVLGWGVGGIE 235 Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295 AEA MLG PISM+LPEVVGF++TG L E VTATDLVLT+T MLRK GVV KFVEF+G G Sbjct: 236 AEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGV 295 Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355 +++ LADRATIANMAPEYGAT GFFP+D T+DYL+ +GRS +V+L+E Y K G++R Sbjct: 296 KTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT 355 Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMN--------EYYK 407 E++ ++ ++LDL V PSVAGP+RP R+ LS++ F ++ + Sbjct: 356 Y--AEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPE 413 Query: 408 KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPW 467 + H K+ KG ++ L HG V IA+ITSCTNT NPSVM+ AGLLA+ AV GLK P+ Sbjct: 414 EKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPY 473 Query: 468 VKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSL 527 +KTS +PGS+V +YL +GL++YLE LGF G+GC TCIGNSG L E+SE I L Sbjct: 474 IKTSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDL 533 Query: 528 VVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYL 587 V A VLSGNRNFEGR+ P ANYL SPPLVVAYALAG V + +P+G D+ G PV+L Sbjct: 534 VAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFL 593 Query: 588 RDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP 647 RDIWP EIQ+ KYV +++K+ YS++ +G+ W ++VP+ + Y WDEKSTY+ NP Sbjct: 594 RDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNP 653 Query: 648 PYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDF 707 P+F+T+ P I I A L LGD ITTDHISPAG+I S AA YL +RGV+ KDF Sbjct: 654 PFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDF 713 Query: 708 NQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQ 767 N +G RRGN EVM+RGTF+NIR+ N + GK G T+H P+ E++ IYDAA +YK + Sbjct: 714 NTYGARRGNDEVMVRGTFANIRLINKLC---GKVGPNTVHVPTGEKMSIYDAAEKYKQEG 770 Query: 768 VPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGIS 827 VPL+V AG EYG+GSSRDWAAKG L GV++VIAESFERIHRSNL+GMG++P F G + Sbjct: 771 VPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFERIHRSNLVGMGILPLQFLNGEN 830 Query: 828 WKNLNIKGDEIINIR-KLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGG 886 +L + G E +I + P Q+ + + G K I IDT E+ + K+GG Sbjct: 831 ADSLGLTGKEQFSIDLNSGELKPGQD--VTVKTDTG--KTFDTILRIDTEVEVEYFKHGG 886 Query: 887 ILQAVLRQL 895 ILQ VLR+L Sbjct: 887 ILQYVLRKL 895 >gnl|CDD|177699 PLN00070, PLN00070, aconitate hydratase. Length = 936 Score = 1038 bits (2685), Expect = 0.0 Identities = 459/890 (51%), Positives = 601/890 (67%), Gaps = 34/890 (3%) Query: 23 YYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEV 82 YYSLP A I +LP S+++LLE+ +R D VTKE + + W +N + E+ Sbjct: 63 YYSLP---ALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDW-ENTSPKQVEI 118 Query: 83 SYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNK 142 ++ +RVL+QDFTGVPAVVDLA MRDA+ LGGDP INPLVPVDLVIDHS+ VD + ++ Sbjct: 119 PFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSE 178 Query: 143 DAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENG 202 +AV N +LE+QRN+ER+ FLKWG +F+N VVPPG+GI HQ+NLEYLG+ V+ N Sbjct: 179 NAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVF----NT 234 Query: 203 ENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQ 262 + I YPD+ VGTDSHTTMI+ LG+ GWGVGGIEAEAAMLG P+SM+LP VVGF+++G L+ Sbjct: 235 DGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLR 294 Query: 263 EGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322 +GVTATDLVLT+TQMLRK GVV KFVEF+G G + LADRATIANM+PEYGAT GFFPV Sbjct: 295 DGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPV 354 Query: 323 DRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKV----AFTKKMKLDLGNVSPS 378 D T+ YL+L+GRS+ V ++EAY + M+ +DY + ++ ++LDL +V P Sbjct: 355 DHVTLQYLKLTGRSDETVAMIEAYLRANKMF---VDYNEPQQERVYSSYLELDLEDVEPC 411 Query: 379 VAGPRRPESRLSLSEVPSSFVTEMNEYY--------KKSHTLDEKYPVKGCDFHLKHGDV 430 ++GP+RP R+ L E+ + + + ++ K++ + K+ G L+HG V Sbjct: 412 ISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSV 471 Query: 431 AIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVE 490 IA+ITSCTNT NPSVM+GAGL+A+ A GL+ KPW+KTS APGS V +YL+++GL + Sbjct: 472 VIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQK 531 Query: 491 YLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEAN 550 YL GF +VG+GCTTCIGNSG L + ++ I + +V A VLSGNRNFEGR+ P AN Sbjct: 532 YLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRAN 591 Query: 551 YLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLY 610 YL SPPLVVAYALAG V + K+PIG + G V+ RDIWP + E+ V V D++ Sbjct: 592 YLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMF 651 Query: 611 KKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILC 670 K Y + KG+ W + VP Y WD KSTY+ PPYF+ ++ P + A L Sbjct: 652 KSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLL 711 Query: 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRI 730 GD ITTDHISPAGSI S AA YL +RGV KDFN +G+RRGN E+M RGTF+NIRI Sbjct: 712 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRI 771 Query: 731 CNYML-GEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789 N +L GE G K T+H P+ E+L ++DAAM+YK + ++ AG EYG+GSSRDWAAK Sbjct: 772 VNKLLKGEVGPK---TVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAK 828 Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIR---KLKT 846 G LLGV++VIA+SFERIHRSNL+GMG+IP F G L + G E I + Sbjct: 829 GPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISE 888 Query: 847 ISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 I P Q+ T+ + +F C DT E+ + +GGIL V+R L Sbjct: 889 IKPGQDVTVTTD-NGKSFTCT---LRFDTEVELAYFDHGGILPYVIRNLI 934 >gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114). Length = 858 Score = 778 bits (2009), Expect = 0.0 Identities = 379/880 (43%), Positives = 533/880 (60%), Gaps = 47/880 (5%) Query: 18 GIDYVYYSLPKA-EANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG 76 G D Y+ A EA +LP + ++L ENL+R E + A + + Sbjct: 10 GTDLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVR-----RCDPETLSASLLQI---- 60 Query: 77 TVESEVSYRF----SRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDH 132 +E + F +RV+ D G A+VDLA +RDAI GGDP +NP+VP L++DH Sbjct: 61 -IERKRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDH 119 Query: 133 SLIVDYSG-NKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYL 191 SL V+Y G + DA +N+ +E +RNE+R+ F+ W + +FKN V+P G GI HQINLE + Sbjct: 120 SLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKM 179 Query: 192 GQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPE 251 + KN +A+PDTCVGTDSHT ++ALG++ GVGG+EAE MLG M LP+ Sbjct: 180 SPVIQVKN----GVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPD 235 Query: 252 VVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAP 311 +VG E+TG Q G+TATD+VL +T+ LRKE VVS ++EFFG G ++ + DRATI+NM P Sbjct: 236 IVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTP 295 Query: 312 EYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLD 371 EYGAT F +D TIDYL+L+GR +V LVE Y K G+W + + + + + ++ D Sbjct: 296 EYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAKAAGLWADSL--KHAVYERVLEFD 353 Query: 372 LGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVA 431 L +V ++AGP P +R+ S++ + + ++ L + G V Sbjct: 354 LSSVVRNMAGPSNPHARVPTSDLAARGIA--GPAEEQPEGL------------MPDGAVI 399 Query: 432 IASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEY 491 IA+ITSCTNT NP ++ AGLLARNA + GLK KPWVKTS APGS+V+ YL +AGL+ Sbjct: 400 IAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPE 459 Query: 492 LEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANY 551 LE LGF +V F CTTC G SGAL I + I + L VLSGNRNF+GRI P + + Sbjct: 460 LEQLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAF 519 Query: 552 LLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYK 611 L SPPLVVAYA+AG +R ++ KD +G D G P+ L+DIWP D EI + V V + ++ Sbjct: 520 LASPPLVVAYAIAGTIRFDIEKDVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFR 579 Query: 612 KKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCL 671 K Y +F D + + S Y W STY+R PPY+E + + G R L + Sbjct: 580 KVYIPMFDLDDT----QSAVSPLYDWRPMSTYIRRPPYWEGA---LAGERTLKGMRPLAI 632 Query: 672 LGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRIC 731 LGD ITTDH+SP+ +I SAA YL + G+ E+DFN + T RG+H R TF+N ++ Sbjct: 633 LGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLF 692 Query: 732 NYMLGEEG--KKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789 N M+ +G K+G P + +++A Y + PL++ AG +YG GSSRDWAAK Sbjct: 693 NEMVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAK 752 Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISP 849 G RL GV +++AE FERIHR+NL+GMGV+P F G + L + G E ++ + I+P Sbjct: 753 GVRLAGVEAIVAEGFERIHRTNLVGMGVLPLEFKPGTNRHTLGLDGTETFDV--VGEITP 810 Query: 850 RQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQ 889 R + TL + +G VP+ C +DT +E++ + GG+LQ Sbjct: 811 RADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQ 850 >gnl|CDD|180896 PRK07229, PRK07229, aconitate hydratase; Validated. Length = 646 Score = 255 bits (654), Expect = 4e-68 Identities = 222/843 (26%), Positives = 331/843 (39%), Gaps = 248/843 (29%) Query: 80 SEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHSLIV 136 E++ R + L QD TG A + AM G + V +L +DH+L+ Sbjct: 23 EEIAIRIDQTLTQDATGTMAYLQFEAM--------GLDR-----VKTELSVQYVDHNLLQ 69 Query: 137 DYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVV--PPGTGICHQINLEYLGQS 194 + + N + +RFL Q + + PG GICHQ++LE Sbjct: 70 --ADFE-------------NADDHRFL---QSVAAKYGIYFSKPGNGICHQVHLE----- 106 Query: 195 VWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVV 253 A+P T +G+DSHT LG+L G GG++ AM G P + +P+VV Sbjct: 107 ---------RFAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVV 157 Query: 254 GFEVTGSLQEGVTATDLVLTITQMLRKEGV---VSKFVEFFGSGFESMVLADRATIANMA 310 G ++TG L V+A D++L +LR+ V V K +E+FG G ++ + +RATI NM Sbjct: 158 GVKLTGKLPPWVSAKDVILE---LLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMG 214 Query: 311 PEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKL 370 E GAT FP D T ++L+ GR + + ++ D +Y++V +++ Sbjct: 215 AELGATTSIFPSDERTREFLKAQGRE-------DDWVELLA--DPDAEYDEV-----IEI 260 Query: 371 DLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDV 430 DL + P +AGP H+ D PV + V Sbjct: 261 DLSELEPLIAGP---------------------------HSPDNVVPVS----EVAGIKV 289 Query: 431 AIASITSCTNTFNPS---VMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAG 487 I SCT N S +M A +L G K P V PGS+ E L + G Sbjct: 290 DQVLIGSCT---NSSYEDLMRAASIL------KGKKVHPKVSLVINPGSRQVLEMLARDG 340 Query: 488 LVEYLEALGFSLVGFGCTTCIGNSGALK-KEISEVIHQKSLVVAGVLSGNRNFEGRISPD 546 + L A G ++ C CIG A +S + + NRNF GR S Sbjct: 341 ALADLIAAGARILENACGPCIGMGQAPATGNVS------------LRTFNRNFPGR-SGT 387 Query: 547 VEAN-YLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFV---N 602 +A YL SP A AL G I DP + +PK E + F Sbjct: 388 KDAQVYLASPETAAASALTGV-----ITDPRTLALENGE------YPKLEEPEGFAVDDA 436 Query: 603 KYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP-----PYFETISKHI 657 + D S ++EV VR P P E + Sbjct: 437 GIIAP-----------AEDGS--DVEV--------------VRGPNIKPLPLLEP----L 465 Query: 658 PEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNH 717 P++++ ++L +GD ITTDHI PAG A +L R Sbjct: 466 PDLLE---GKVLLKVGDNITTDHIMPAG--------AKWLPYR----------------- 497 Query: 718 EVMMRGTFSNI-RICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGV 776 SNI I ++ E R K +Q +V G Sbjct: 498 --------SNIPNISEFVF-----------------EGVDNTFPERAK-EQGGGIVVGGE 531 Query: 777 EYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLN---- 832 YG GSSR+ AA R LGV++V+A+SF RIH++NLI G++P F + Sbjct: 532 NYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTF------ADPADYDK 585 Query: 833 IKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVL 892 I+ +++ I L+ P T+ D + + + +I L GG L + Sbjct: 586 IEEGDVLEIEDLREFLPGGPLTVVNVTKDEEIEVRHTL----SERQIEILLAGGALNLIK 641 Query: 893 RQL 895 ++L Sbjct: 642 KKL 644 >gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized. Length = 658 Score = 226 bits (578), Expect = 1e-59 Identities = 185/720 (25%), Positives = 273/720 (37%), Gaps = 179/720 (24%) Query: 155 RNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVG 213 +N + ++FL F + PG GICH ++ E N A P T +G Sbjct: 70 KNADDHKFLMSAAGKFGAW-FSKPGNGICHNVHKE--------------NFAAPGKTLLG 114 Query: 214 TDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLT 273 +DSHT LG+L G GGI+ AAM G + +PE+VG + G L E TA D++L Sbjct: 115 SDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILE 174 Query: 274 ITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLS 333 + + L +G + K E+FG G E + + +RATI NM E GAT FP D T +L Sbjct: 175 LLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSDDITEAWLAAF 234 Query: 334 GRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSE 393 R + VDL D D E + ++++DL ++ P +A P P++ + + E Sbjct: 235 DREDDFVDL-----------LADADAE---YADEIEIDLSDLEPLIAEPHMPDNVVPVRE 280 Query: 394 VPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLL 453 + V ++ I SCTN ++ A LL Sbjct: 281 IAGIEVDQV-------------------------------MIGSCTNGAFEDLLPAAKLL 309 Query: 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGA 513 G + + + APGS+ + E + Q G + A G + + C CIG Sbjct: 310 ------EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIG---- 359 Query: 514 LKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIK 573 + + + S NRNFEGR + YL SP A A+AG I Sbjct: 360 -------IGFAPASDGVSLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGE-----II 407 Query: 574 DPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633 DP + +D +GD E+ E Sbjct: 408 DP------------------------------------RDLADD-EGDLEAIGFEMGEKF 430 Query: 634 TYMWDEKSTYVRNP-----------PYFETISKHIPEIVDICGARILCLLGDKITTDHIS 682 +D + P + + + P DI G ++ D ITTDHI Sbjct: 431 PGGYDAADIDIIPKEEREDDDIIKGPNIKPLPEFDPLGADIEG-ETALIMEDNITTDHII 489 Query: 683 PAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKG 742 PAG+ L+ R SNI + E Sbjct: 490 PAGADILK------FR---------------------------SNI----EAISE----- 507 Query: 743 GYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAE 802 +T+H E + A ++ AG YG GSSR+ AA LGV +VIA+ Sbjct: 508 -FTLHRIDDE---FAERAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAK 563 Query: 803 SFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDG 862 SF RIH +NL G++P F + + GD+I L E I+ +D Sbjct: 564 SFARIHHANLFNFGILPLEFDNEEDYAKFEL-GDDIEIPDDLAAALADGEDEFTINKNDD 622 >gnl|CDD|162306 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. Length = 745 Score = 225 bits (574), Expect = 5e-59 Identities = 214/807 (26%), Positives = 322/807 (39%), Gaps = 179/807 (22%) Query: 88 RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147 RV MQD + A++ G PQ VP + DH LIV G + R Sbjct: 58 RVAMQDASAQMALLQFMT--------CGLPQ---VAVPASIHCDH-LIVGQKGGDKDLAR 105 Query: 148 NKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAY 207 N+E + FL+ K + PG+GI HQI LE N A+ Sbjct: 106 AIAT----NKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLE--------------NYAF 146 Query: 208 PD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVT 266 P +GTDSHT LG + GVGG +A A+ G P + P+++G ++TG L + Sbjct: 147 PGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTS 206 Query: 267 ATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326 D++L + +L G VE+FG G ES+ ATI NM E GAT FP + Sbjct: 207 PKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAM 266 Query: 327 IDYLRLSGRSNSRVDL-VEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRP 385 YL+ + R+ D Y+ + E Y+++ +++DL + P + GP P Sbjct: 267 SRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDEL-----IEIDLSKLEPHINGPFTP 321 Query: 386 ESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPS 445 + +S+ +K++ +P K ++ I SCTN+ + Sbjct: 322 DLSTPISK------------FKET-VQKNGWPEK----------LSAGLIGSCTNS-SYE 357 Query: 446 VMIGAGLLARNAVRAGLKSK-PWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504 M + ++A +AGLK K P+ T PGS+ L + G+++ E G ++ C Sbjct: 358 DMSRCASIVKDAEQAGLKPKSPFYVT---PGSEQIRATLERDGILQTFEKFGGIVLANAC 414 Query: 505 TTCIGN---SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVVA 560 CIG +KK I + S NRNF GR + N+L SP +V A Sbjct: 415 GPCIGQWDRKDDVKKGEPNTI---------LTSYNRNFRGRNDGNPATMNFLASPEIVTA 465 Query: 561 YALAGNVRKN----LIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYS- 615 + AG++ N + P G++ + PK E L +K + Sbjct: 466 MSYAGSLTFNPLTDSLTTPDGKEFKFPA-------PKGDE------------LPEKGFEA 506 Query: 616 --DVFKG--DSSWWNIEV---PESETYM-------WDEKSTYVRNPPYFETISKHIPEIV 661 D F+ S N+EV P S+ W+ K Sbjct: 507 GRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPWNGK--------------------- 545 Query: 662 DICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRG----VKEKDFNQFGTRRGNH 717 D+ G R+L + K TTDHIS AG +L+ +G + Sbjct: 546 DLSGLRVLIKVTGKCTTDHISAAG---------PWLKYKGHLDNISNNTLIG-AVNAETG 595 Query: 718 EVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVE 777 EV N +G KG I + A +K P VV A Sbjct: 596 EV------------NKAYDLDGSKGT------------IPELARDWKARGQPWVVVAEHN 631 Query: 778 YGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDE 837 YG GS+R+ AA R LG R +I +SF RIH +NL GV+P F + + GDE Sbjct: 632 YGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ-PGDE 690 Query: 838 I--INIRKLKTISPRQESTLEIHYSDG 862 + +N+ ++ E L + +G Sbjct: 691 VATLNLYEMLKNGGGGEVDLRVTKKNG 717 >gnl|CDD|179006 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed. Length = 418 Score = 154 bits (392), Expect = 9e-38 Identities = 136/493 (27%), Positives = 191/493 (38%), Gaps = 130/493 (26%) Query: 89 VLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRN 148 V+ D TG A+ DP I +V DH Sbjct: 31 VMAHDITGPLAI---KEFEKIGGDKVFDPSKIV------IVFDH------------FVPA 69 Query: 149 KDLEYQRNEERYRFL-KWGQK-SFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIA 206 KD ++ E+ + L ++ ++ NF V G GICHQ+ E + + Sbjct: 70 KD---IKSAEQQKILREFAKEQGIPNFFDV--GEGICHQVLPE-------------KGLV 111 Query: 207 YP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGV 265 P D VG DSHT ALG G+G + AAM +PE + + G L GV Sbjct: 112 RPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGV 171 Query: 266 TATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRG 325 TA D++L I + +G K +EF G E++ + +R T+ANMA E GA G F D Sbjct: 172 TAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFAPDEK 231 Query: 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRP 385 T++YL+ R+ ++ ED +YE+V ++DL + P VA P P Sbjct: 232 TLEYLK--ERAGRDYKPWKSD--------EDAEYEEV-----YEIDLSKLEPQVAAPHLP 276 Query: 386 ESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPS 445 ++ +SEV E V D I SCTN Sbjct: 277 DNVKPVSEV-------------------EGTKV----------DQVF--IGSCTN----- 300 Query: 446 VMIGAGLLA--RNAVR--AGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVG 501 G L R A G K P V+ P SQ Y ++ GL+E G + Sbjct: 301 -----GRLEDLRIAAEILKGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVST 355 Query: 502 FGCTTCIGNSGALKKEISEVIHQKSLVVAGVL--------SGNRNFEGRI-SPDVEANYL 552 C C+G H GVL + NRNF+GR+ SP+ E YL Sbjct: 356 PTCGPCLG------------GHM------GVLAPGEVCLSTTNRNFKGRMGSPESEV-YL 396 Query: 553 LSPPLVVAYALAG 565 SP + A A+ G Sbjct: 397 ASPAVAAASAVTG 409 >gnl|CDD|162691 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities. Length = 412 Score = 149 bits (378), Expect = 3e-36 Identities = 111/395 (28%), Positives = 160/395 (40%), Gaps = 80/395 (20%) Query: 174 RVVPPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVG 232 V G GICHQ+ +E E A P VG DSHT A+G G+G Sbjct: 88 PVFDVGEGICHQVLVE-------------EGYAGPGMVVVGGDSHTCTSGAVGAFATGMG 134 Query: 233 GIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFG 292 + A+ + +PE + V G +EGVTA D+ L I L +G +EFFG Sbjct: 135 ATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFG 194 Query: 293 SGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGM 352 E+M + +R T+ NMA E GA G D T +YL+ R+ Sbjct: 195 LPIEAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFRILRP--------- 245 Query: 353 WREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTL 412 Y+ +++DL ++ P VA P ++ +S+V TE+++ + Sbjct: 246 -DPGAKYDDE-----IEIDLSDLEPLVAVPHSVDNVRPVSDVEG---TEIDQVF------ 290 Query: 413 DEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSC 472 I SCTN + I A +L G + P V+ Sbjct: 291 ----------------------IGSCTNGRIEDLRIAAEIL------EGRRVHPDVRLIV 322 Query: 473 APGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAG 531 P S+ YE ++ G++ L G + GC C+G + G L EV Sbjct: 323 VPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVLGD--GEVC--------- 371 Query: 532 VLSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAG 565 V + NRNF GR+ SPD E YL SP A A+ G Sbjct: 372 VSTTNRNFRGRMGSPDAEI-YLASPATAAASAVEG 405 >gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis. Length = 412 Score = 134 bits (338), Expect = 1e-31 Identities = 108/405 (26%), Positives = 158/405 (39%), Gaps = 102/405 (25%) Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIE 235 G GICHQ+ E E + P D VG DSHT ALG G+G + Sbjct: 92 DVGEGICHQVLPE-------------EGLVKPGDLVVGADSHTCTYGALGAFATGMGSTD 138 Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295 A+ +PE + +TG L GVTA D++L + + +G +EF G Sbjct: 139 IAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETI 198 Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355 ++M + +R T+ANMA E G G D T YL+ + E + + E Sbjct: 199 KNMTMEERMTLANMAIEAGGKTGIIEPDEKTRAYLKERYK--------EPFRVYKS--DE 248 Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEK 415 D +Y K +++D + P VA P ++ +SEV E+++ + Sbjct: 249 DAEYAKE-----VEIDASQLEPVVAAPHNVDNVHPVSEVEG---IEVDQVF--------- 291 Query: 416 YPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLA--RNAVR--AGLKSKPWVKTS 471 I SCTN G + R A + G K P V+ Sbjct: 292 -------------------IGSCTN----------GRIEDLRVAAKILKGRKVAPDVRLI 322 Query: 472 CAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAG 531 P S+ Y ++ GL+E G + GC C+G HQ G Sbjct: 323 VIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLG------------RHQ------G 364 Query: 532 VL--------SGNRNFEGRI-SPDVEANYLLSPPLVVAYALAGNV 567 VL + NRNF+GR+ P+ E YL SP A A+ G + Sbjct: 365 VLAPGEVCISTSNRNFKGRMGDPNAEI-YLASPATAAASAVKGRI 408 >gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway. Length = 419 Score = 133 bits (336), Expect = 2e-31 Identities = 110/365 (30%), Positives = 155/365 (42%), Gaps = 63/365 (17%) Query: 203 ENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSL 261 E I P D +G DSHT ALG GVG + M +PE + F + G L Sbjct: 108 EGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKL 167 Query: 262 QEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFP 321 + VT DL+L I ++ +G + K +EF G G + + + DR TIANMA E GA G FP Sbjct: 168 KPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFP 227 Query: 322 VDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAG 381 VD TI+Y + GR + +A ED Y +V +++DL + P VA Sbjct: 228 VDEITIEYEK--GRGKREEKIYKA--------DEDAKYVRV-----IEIDLSELEPQVAF 272 Query: 382 PRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNT 441 P PE+ +SE K +K + I SCTN Sbjct: 273 PHLPENTKDISEA-------------------GKEEIK----------IDQVVIGSCTNG 303 Query: 442 FNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVE-YLEALGFSLV 500 + + A +L G P V+ PGSQ Y ++ GL+E ++EA G + Sbjct: 304 RLEDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEA-GAVVS 356 Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVA 560 C C+G + E E + + NRNF GR+ YL SP + A Sbjct: 357 TPTCGPCLGGHMGILAE-GER---------AISTTNRNFVGRMGHPKSEVYLASPAVAAA 406 Query: 561 YALAG 565 A+ G Sbjct: 407 SAIKG 411 >gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit; Provisional. Length = 471 Score = 119 bits (300), Expect = 4e-27 Identities = 118/433 (27%), Positives = 163/433 (37%), Gaps = 88/433 (20%) Query: 171 KNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGW 229 + F V P GI H + E LG + P V DSHTT ALG L + Sbjct: 98 RLFDVDDPRQGIVHVVAPE-LG------------LTLPGMVIVCGDSHTTTYGALGALAF 144 Query: 230 GVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVE 289 G+G E E + + P+ + V G L GVTA DL+L + + +G +E Sbjct: 145 GIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIE 204 Query: 290 FFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGR----SNSRVDLVEA 345 F G ++ + R T+ NMA E GA G D T DYLR GR + D A Sbjct: 205 FAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLR--GRPRAPKGALWDAALA 262 Query: 346 YTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSE-VPSSFVTEMNE 404 Y WR F +++++D +++P V P+ + ++ VP Sbjct: 263 Y------WRTLRSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVP--------- 307 Query: 405 YYKKSHTLDEKYPVKGCDF-------HLKHG----DVAI--ASITSCTNTFNPSVMIGAG 451 E P + L G + I I SCTN G Sbjct: 308 -----DPAAEADPARRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTN----------G 352 Query: 452 ----LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTC 507 L A AV G K P V+ PGS GL A GF GC+ C Sbjct: 353 RIEDLRAAAAVLRGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMC 412 Query: 508 IGNSGALKKEISEVIHQKSLVVAG---VLSGNRNFEGRISPDVEANYLLSPPLVVAYALA 564 + + ++ G + NRNFEGR P +L+SP +V A A+A Sbjct: 413 LAMND-------------DVLAPGERCASTTNRNFEGRQGPGART-HLMSPAMVAAAAVA 458 Query: 565 G---NVRKNLIKD 574 G +VR L Sbjct: 459 GHITDVRSLLQAG 471 >gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain. Length = 712 Score = 109 bits (274), Expect = 3e-24 Identities = 109/410 (26%), Positives = 165/410 (40%), Gaps = 73/410 (17%) Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIE 235 P G GI HQI +E E A+P V +DSH+ M LG LG + + Sbjct: 97 PAGRGIGHQIMIE-------------EGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTD 143 Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSG- 294 A A +P V E G L GV+ D+++ + + K+ V++ +EF GS Sbjct: 144 AAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSED 203 Query: 295 -FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR----------LSGRSNSRVDLV 343 ++ + R TIANM E+GA G FP+D+ ID+L+ G + Sbjct: 204 SLNALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAER 263 Query: 344 EAYTKVQGMWREDIDYEKVA-FTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEM 402 + ++ + +K A + K++ +DL ++S V+GP Sbjct: 264 FTHPALEEKAEIPLKADKDAHYAKELFIDLASLSHYVSGPNS------------------ 305 Query: 403 NEYYKKSHTLDEKYPVKGCDFHLKHGDVAI--ASITSCTNTFNPSVMIGAGLLARNAVRA 460 K ++ L + L+ D+ I A + SCTN+ + A + A + Sbjct: 306 ---VKVANPLKD----------LEAQDIKIDKAYLVSCTNSRASDIAAAADVFCEAADKN 352 Query: 461 GLKSK---PWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKE 517 G K P V+ A S G E L G + GC CIG L E Sbjct: 353 GGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAGLL-E 411 Query: 518 ISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567 EV G+ + NRNF+GR+ YL SP +V A AL G + Sbjct: 412 PGEV---------GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI 452 >gnl|CDD|161741 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly. Length = 465 Score = 104 bits (260), Expect = 1e-22 Identities = 97/359 (27%), Positives = 142/359 (39%), Gaps = 27/359 (7%) Query: 210 TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATD 269 T V DSHT+ A G L +G+G E E + + + + EV G L G+TA D Sbjct: 123 TIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKD 182 Query: 270 LVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDY 329 ++L I G +EF G + + R T+ NMA E GA G D T +Y Sbjct: 183 IILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEY 242 Query: 330 LRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRL 389 + GR ++ + + K W+ E F + L+ ++SP V P L Sbjct: 243 CK--GRPHAPKG--KEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNPGQVL 298 Query: 390 SL-SEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIAS--ITSCTNTFNPSV 446 + SEVP + K+ + + G + D+ + I SCTN S Sbjct: 299 PVNSEVPDP--ESFADPVDKA-SAERALAYMGLEPGTPLKDIKVDKVFIGSCTN----SR 351 Query: 447 MIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTT 506 + L A AV G K VK PGS + + GL + GF GC+ Sbjct: 352 I--EDLRAAAAVIKGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSM 409 Query: 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG 565 C+G + E + NRNFEGR +L+SP + A A+ G Sbjct: 410 CLGMNNDRLPEGERCAS----------TSNRNFEGRQGRGGR-THLVSPAMAAAAAIHG 457 >gnl|CDD|180112 PRK05478, PRK05478, isopropylmalate isomerase large subunit; Validated. Length = 466 Score = 83.6 bits (208), Expect = 2e-16 Identities = 110/388 (28%), Positives = 151/388 (38%), Gaps = 84/388 (21%) Query: 215 DSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTI 274 DSHT+ A G L +G+G E E + + P+ + EV G L GVTA D++L I Sbjct: 128 DSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAI 187 Query: 275 TQMLRKEGV---VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR 331 + K G +EF G ++ + R TI NM+ E GA G D T +YL+ Sbjct: 188 ---IGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEYLK 244 Query: 332 LSGRSNSRVDLVEAYTKVQGMWR-----EDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPE 386 GR + E + K W+ ED ++KV + LD ++ P V P Sbjct: 245 --GRPFAPKG--EDWDKAVAYWKTLKSDEDAVFDKV-----VTLDAADIEPQVTWGTNPG 295 Query: 387 SRLSLSEV---PSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHG----DVAI--ASITS 437 +S+ P F + K + + G LK G D+ I I S Sbjct: 296 QVISIDGKVPDPEDFADPV-----KRASAERALAYMG----LKPGTPITDIKIDKVFIGS 346 Query: 438 CTNTFNPSVMIGAG----LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV--QA---GL 488 CTN L A AV G K P V+ PGS LV QA GL Sbjct: 347 CTN----------SRIEDLRAAAAVVKGRKVAPGVRALVVPGSG-----LVKAQAEAEGL 391 Query: 489 VEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAGVLSG---NRNFEGRIS 544 + GF GC+ C+ N L G NRNFEGR Sbjct: 392 DKIFIEAGFEWREPGCSMCLAMNPDKLP--------------PGERCASTSNRNFEGRQG 437 Query: 545 PDVEANYLLSPPLVVAYALAG---NVRK 569 +L+SP + A A+ G +VR+ Sbjct: 438 KGGR-THLVSPAMAAAAAITGHFVDVRE 464 >gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional. Length = 751 Score = 58.5 bits (142), Expect = 8e-09 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 35/214 (16%) Query: 176 VPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIE 235 VPP + HQ E + G+ I +G+DSHT ALG + G GG E Sbjct: 123 VPPHIAVIHQYMREMMAGG-------GKMI------LGSDSHTRY-GALGTMAVGEGGGE 168 Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVV-SKFVEFFGSG 294 +L + P VV +TG GV D+ L I + K G V +K +EF G G Sbjct: 169 LVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPG 228 Query: 295 FESMVLADRATIANMAPEYGATC--GFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGM 352 ++ R + M E TC + D ++L L GR + Y + Sbjct: 229 VSALSTDFRNGVDVMTTE--TTCLSSIWQTDEEVHNWLALHGRG-------QDYCE---- 275 Query: 353 WREDIDYEKVAFTKKM-KLDLGNVSPSVAGPRRP 385 ++ + +A+ +DL + P +A P P Sbjct: 276 ----LNPQPMAYYDGCISVDLSAIKPMIALPFHP 305 Score = 36.9 bits (86), Expect = 0.026 Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 2/51 (3%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFE-RIHRSNLIGMGVIPF 820 +V+A V+ G+GS+R+ AA R+LG + IAE + + +RSN+I G++PF Sbjct: 631 MVYA-VKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPF 680 >gnl|CDD|184460 PRK14023, PRK14023, homoaconitate hydratase small subunit; Provisional. Length = 166 Score = 52.9 bits (127), Expect = 3e-07 Identities = 20/50 (40%), Positives = 36/50 (72%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPF 820 ++ AG +G GSSR++A + ++LG+ ++IA+S+ RI NL+ +G+ PF Sbjct: 52 ILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPF 101 >gnl|CDD|162692 TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities. Length = 154 Score = 52.8 bits (127), Expect = 4e-07 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 21/124 (16%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830 V+ AG +G GSSR+ AA + G+ +VIAESF RI N I +G+ + Sbjct: 50 VIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLI-----EAKTE 104 Query: 831 LNIKGDEI-INIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQ 889 GDE+ +++ + E +K P+ D L EI L+ GG+L+ Sbjct: 105 GIKDGDEVTVDLETGEIRVNGNE----------EYKGEPL---PDFLLEI--LREGGLLE 149 Query: 890 AVLR 893 + + Sbjct: 150 YLKK 153 >gnl|CDD|179025 PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed. Length = 163 Score = 49.1 bits (118), Expect = 6e-06 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 10/96 (10%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWK- 829 ++ AG +G GSSR+ A + GV +VIA+SF RI N I +G +P K Sbjct: 51 IIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIG-LPVLECDEAVDKI 109 Query: 830 ------NLNIKGDEIINIRKLKTIS--PRQESTLEI 857 ++++ I N+ + P E LEI Sbjct: 110 EDGDEVEVDLETGVITNLTTGEEYKFKPIPEFMLEI 145 >gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria. Length = 844 Score = 43.7 bits (103), Expect = 2e-04 Identities = 96/390 (24%), Positives = 141/390 (36%), Gaps = 89/390 (22%) Query: 208 PDTCVGT--DSHTTMINALGILGWGVGGIEAEAAMLGC-PISMLLPEVVGFEVTGSLQEG 264 PDT VGT DSHT LGI G+ A AA G P+ M PE V G +Q G Sbjct: 479 PDT-VGTGGDSHTRF--PLGISFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQPG 533 Query: 265 VTATDLVLTITQMLRKEGVVS-----KFVEFFGSGFESMVLADRAT-----IANMAPEYG 314 +T DLV I K+G+++ K F G E L D + + + E Sbjct: 534 ITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIEGLPDLKVEQAFELTDASAERS 593 Query: 315 ATCGFFPVDRGT-IDYLR----------LSGRSNS-----RVDLVEAYTKVQGMWREDID 358 A +++ I+YL G + R+ +E + + D D Sbjct: 594 AAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADAD 653 Query: 359 YEKVAFTKKMKLDLGNVS-PSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYP 417 E A +++DL + P +A P P+ LSEV + +DE + Sbjct: 654 AEYAAV---IEIDLAEIKEPILAAPNDPDDVRPLSEV-------------QGDKIDEVF- 696 Query: 418 VKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQ 477 I SC N AG + A L ++ WV AP ++ Sbjct: 697 -----------------IGSCMT--NIGHFRAAGKILDAA--GQLPTRLWV----APPTR 731 Query: 478 VSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNR 537 + + L + G A G GC+ C+GN + + V + + R Sbjct: 732 MDEQQLTEEGYYSIFGAAGARTEIPGCSLCMGNQARVADGAT--------VFS---TSTR 780 Query: 538 NFEGRISPDVEANYLLSPPLVVAYALAGNV 567 NF R+ YL S L AL G + Sbjct: 781 NFPNRMGTGANV-YLGSAELAAVCALLGKI 809 Score = 31.4 bits (71), Expect = 1.1 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 12/83 (14%) Query: 46 VLLENLLR--FEDGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDL 103 VLL+ ++ + D T+ + +I KWL N +E++ ++ V+ +DL Sbjct: 615 VLLKWMIAEGYGDRRTL-ERRIQGMEKWLANPELLEADADAEYAAVIE---------IDL 664 Query: 104 AAMRDAIVVLGGDPQNINPLVPV 126 A +++ I+ DP ++ PL V Sbjct: 665 AEIKEPILAAPNDPDDVRPLSEV 687 >gnl|CDD|173273 PRK14812, PRK14812, hypothetical protein; Provisional. Length = 119 Score = 43.2 bits (101), Expect = 3e-04 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIK-GDEI- 838 GSSR+ AA G + VIA SF IH +N + G++P + + K +K D++ Sbjct: 3 GSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVT 62 Query: 839 INIRKLKTISPRQESTLEI 857 +++ + K ISP +E T EI Sbjct: 63 VDLEQQKIISPVEEFTFEI 81 >gnl|CDD|181718 PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated. Length = 835 Score = 42.5 bits (101), Expect = 5e-04 Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 11/78 (14%) Query: 208 PDTCVGT--DSHTTMINALGILGWGVG-GIEAEAAMLG-CPISMLLPEVVGFEVTGSLQE 263 PDT VGT DSHT +GI + G G+ A AA G P+ M PE V G +Q Sbjct: 478 PDT-VGTGGDSHTRF--PIGI-SFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQP 531 Query: 264 GVTATDLVLTI-TQMLRK 280 G+T DLV I +++ Sbjct: 532 GITLRDLVHAIPYYAIKQ 549 >gnl|CDD|131139 TIGR02084, leud, 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea. Length = 156 Score = 38.2 bits (89), Expect = 0.008 Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMG 816 ++ AG +G GSSR+ A + G+ VIA+SF RI N I +G Sbjct: 50 IIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIG 95 >gnl|CDD|179314 PRK01641, leuD, isopropylmalate isomerase small subunit; Provisional. Length = 200 Score = 38.2 bits (90), Expect = 0.011 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 31/87 (35%) Query: 754 LFIYDAAMRYKVDQVP----------------LVVFAGVEYGNGSSRD---WAAKGTRLL 794 LF RY D P L+ AG +G GSSR+ WA L Sbjct: 42 LF---DDWRYLDDGQPNPDFVLNQPRYQGASILL--AGDNFGCGSSREHAPWA-----LA 91 Query: 795 --GVRSVIAESFERIHRSNLIGMGVIP 819 G R+VIA SF I +N G++P Sbjct: 92 DYGFRAVIAPSFADIFYNNCFKNGLLP 118 >gnl|CDD|177714 PLN00094, PLN00094, aconitate hydratase 2; Provisional. Length = 938 Score = 37.2 bits (86), Expect = 0.018 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 8/81 (9%) Query: 208 PDTCVGT--DSHTTMINALGILGWGVGGIEAEAAMLGC-PISMLLPEVVGFEVTGSLQEG 264 PDT VGT DSHT +GI G+ A A G P+ M PE V TG++Q G Sbjct: 552 PDT-VGTGGDSHTRF--PIGISFPAGSGLVAFGAATGVIPLDM--PESVLVRFTGTMQPG 606 Query: 265 VTATDLVLTITQMLRKEGVVS 285 +T DLV I ++G+++ Sbjct: 607 ITLRDLVHAIPYTAIQDGLLT 627 >gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small subunit; Provisional. Length = 246 Score = 36.4 bits (84), Expect = 0.033 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 755 FIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIG 814 F+ M+ K ++ G +G GSSR+ A G ++V+AES+ RI N + Sbjct: 120 FVEPGEMKTKYS----IIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVA 175 Query: 815 MGVI 818 G + Sbjct: 176 TGEV 179 >gnl|CDD|129275 TIGR00171, leuD, 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff. Length = 188 Score = 30.9 bits (70), Expect = 1.3 Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 758 DAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGV 817 D + Q ++ A +G GSSR+ A G + +IA SF I +N G+ Sbjct: 59 DFVLNQPQYQGASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGL 118 Query: 818 IP 819 +P Sbjct: 119 LP 120 >gnl|CDD|114880 pfam06187, DUF993, Protein of unknown function (DUF993). This family consists of several hypothetical bacterial proteins of unknown function. Length = 382 Score = 30.0 bits (68), Expect = 2.9 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 665 GARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEK 705 G R+ C G TDH++P+ + L A+Y Q E Sbjct: 107 GGRVACGAG----TDHLAPSPAATLDDVIAAYEEQIEAVEA 143 >gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 448 Score = 29.5 bits (67), Expect = 4.2 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Query: 645 RNPPYFETISKHIPEIVDICG---ARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRG 701 PP +T+++ P++ CG +L + I ISP + L + A G Sbjct: 39 EQPPGLDTLAREFPDVELRCGGFDCELLVQASEII----ISPG--LALDTPALRAAAAMG 92 Query: 702 VK 703 ++ Sbjct: 93 IE 94 >gnl|CDD|177603 PHA03366, PHA03366, FGAM-synthase; Provisional. Length = 1304 Score = 29.2 bits (66), Expect = 5.1 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 13/106 (12%) Query: 490 EYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAG---VLSGNRNFEGRISPD 546 E+ LG V F T+ +S + ++V V S R++PD Sbjct: 759 EFCRELG---VNFTFTSA-SSSPRQDQPPQPGPLFNTIVFTASAPVPSSTP----RLTPD 810 Query: 547 VEA--NYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDI 590 ++ + L+ + Y LAG+V + + G SP YL+++ Sbjct: 811 LKKPGSALVHLSISPEYTLAGSVFEQIFGLKSGTLPDISPSYLKNL 856 >gnl|CDD|184463 PRK14030, PRK14030, glutamate dehydrogenase; Provisional. Length = 445 Score = 29.0 bits (65), Expect = 6.0 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Query: 60 VTKEQIHAF-VKWLDNKGTVESEVSYR 85 V ++I F V W+D+KG V+ + YR Sbjct: 51 VEPDRIFTFRVPWVDDKGEVQVNLGYR 77 >gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit alpha; Validated. Length = 764 Score = 29.0 bits (65), Expect = 6.3 Identities = 10/25 (40%), Positives = 18/25 (72%) Query: 405 YYKKSHTLDEKYPVKGCDFHLKHGD 429 YYK++HT+D+++ +K C +H D Sbjct: 689 YYKEAHTIDQQWSIKACGVRQRHID 713 >gnl|CDD|130202 TIGR01132, pgm, phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P. Length = 543 Score = 28.7 bits (64), Expect = 7.8 Identities = 10/22 (45%), Positives = 16/22 (72%) Query: 96 GVPAVVDLAAMRDAIVVLGGDP 117 G+ +VD+AA++ A + LG DP Sbjct: 213 GLADIVDMAAIQKAGLRLGVDP 234 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.137 0.410 Gapped Lambda K H 0.267 0.0566 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 14,907,107 Number of extensions: 1004707 Number of successful extensions: 1893 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1816 Number of HSP's successfully gapped: 52 Length of query: 896 Length of database: 5,994,473 Length adjustment: 102 Effective length of query: 794 Effective length of database: 3,790,457 Effective search space: 3009622858 Effective search space used: 3009622858 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.0 bits)