RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780451|ref|YP_003064864.1| aconitate hydratase
[Candidatus Liberibacter asiaticus str. psy62]
         (896 letters)



>gnl|CDD|181750 PRK09277, PRK09277, aconitate hydratase; Validated.
          Length = 888

 Score = 1620 bits (4198), Expect = 0.0
 Identities = 559/892 (62%), Positives = 667/892 (74%), Gaps = 9/892 (1%)

Query: 4   SLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKE 63
           S +SF  R  L VGG  Y YYSL   EA GL  ISRLP S++VLLENLLR EDG +VT+E
Sbjct: 3   STDSFKARKTLEVGGKSYDYYSLRALEAKGLGDISRLPYSLRVLLENLLRNEDGRSVTEE 62

Query: 64  QIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123
            I A  +W   K   + E+ +R +RV+MQDFTGVPAVVDLAAMRDAI  LGGDP  INPL
Sbjct: 63  DIEALAEW-LPKAKPDREIPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPL 121

Query: 124 VPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGIC 183
           VPVDLVIDHS+ VDY G  DA  +N +LE++RNEERY+FLKWGQK+F NFRVVPPGTGIC
Sbjct: 122 VPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFLKWGQKAFDNFRVVPPGTGIC 181

Query: 184 HQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC 243
           HQ+NLEYL   VWT+ E+GE +AYPDT VGTDSHTTMIN LG+LGWGVGGIEAEAAMLG 
Sbjct: 182 HQVNLEYLAPVVWTR-EDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ 240

Query: 244 PISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADR 303
           P SML+PEVVG ++TG L EGVTATDLVLT+T+MLRK+GVV KFVEFFG G  S+ LADR
Sbjct: 241 PSSMLIPEVVGVKLTGKLPEGVTATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADR 300

Query: 304 ATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVA 363
           ATIANMAPEYGATCGFFP+D  T+DYLRL+GR   +V LVEAY K QG+WR+ +  E+  
Sbjct: 301 ATIANMAPEYGATCGFFPIDEETLDYLRLTGRDEEQVALVEAYAKAQGLWRDPL--EEPV 358

Query: 364 FTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDF 423
           +T  ++LDL  V PS+AGP+RP+ R+ LS+V  +F        +     + +   +G D+
Sbjct: 359 YTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAELGVQGFGLDEAE---EGEDY 415

Query: 424 HLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYL 483
            L  G V IA+ITSCTNT NPSVMI AGLLA+ AV  GLK KPWVKTS APGS+V  +YL
Sbjct: 416 ELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYL 475

Query: 484 VQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRI 543
            +AGL+ YLEALGF+LVG+GCTTCIGNSG L  EI + I+   LVV  VLSGNRNFEGRI
Sbjct: 476 EKAGLLPYLEALGFNLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRI 535

Query: 544 SPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNK 603
            P V+ANYL SPPLVVAYALAG V  +L KDP+G D+ G+PVYL+DIWP D EI + V K
Sbjct: 536 HPLVKANYLASPPLVVAYALAGTVDIDLEKDPLGTDKDGNPVYLKDIWPSDEEIDAVVAK 595

Query: 604 YVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDI 663
            V  ++++K+Y+DVF+GD  W  IEVPE   Y WD  STY+RNPPYFE +      + DI
Sbjct: 596 AVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGMLAEPGPVRDI 655

Query: 664 CGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRG 723
            GAR+L LLGD ITTDHISPAG+I   S A  YL + GV+ KDFN +G+RRGNHEVMMRG
Sbjct: 656 KGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRG 715

Query: 724 TFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSS 783
           TF+NIRI N M+   G +GGYT H+P  E + IYDAAM+YK +  PLVV AG EYG GSS
Sbjct: 716 TFANIRIRNEMVP--GVEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSS 773

Query: 784 RDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRK 843
           RDWAAKGTRLLGV++VIAESFERIHRSNL+GMGV+P  F  G S K L + G E  +I  
Sbjct: 774 RDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEG 833

Query: 844 LKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895
           L+ + P    T+ I  +DG     P++C IDT  E+++ +NGGILQ VLR L
Sbjct: 834 LEDLKPGATVTVVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRDL 885


>gnl|CDD|183810 PRK12881, acnA, aconitate hydratase; Provisional.
          Length = 889

 Score = 1375 bits (3560), Expect = 0.0
 Identities = 521/896 (58%), Positives = 645/896 (71%), Gaps = 14/896 (1%)

Query: 4   SLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKE 63
           + N         VGG  Y +YSLP         ++RLP S++VLLENLLR EDG  VT+E
Sbjct: 2   AHNLHKTLKEFDVGGKTYKFYSLPALGKELGGDLARLPVSLRVLLENLLRNEDGKKVTEE 61

Query: 64  QIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123
            + A   WL      + E+ +  +RV+MQDFTGVPA+VDLAAMRDA    GGDP  INPL
Sbjct: 62  HLEALANWLPE-RKSDDEIPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPL 120

Query: 124 VPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGIC 183
           VPVDLV+DHS+ VDY G KDA+  N  +E+QRN ERY+FLKWG ++F NFRVVPPGTGI 
Sbjct: 121 VPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFLKWGMQAFDNFRVVPPGTGIM 180

Query: 184 HQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGC 243
           HQ+NLEYL + V TK ++G+ +AYPDT VGTDSHTTMIN +G+LGWGVGGIEAEA MLG 
Sbjct: 181 HQVNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQ 240

Query: 244 PISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADR 303
           P+ ML+P+VVG E+TG L+EGVTATDLVLT+T+MLRKEGVV KFVEFFG G  S+ L DR
Sbjct: 241 PVYMLIPDVVGVELTGKLREGVTATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDR 300

Query: 304 ATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWR---EDIDYE 360
           ATIANMAPEYGAT GFFPVD  T+DYLRL+GR+ +++ LVEAY K QG+W     +  Y 
Sbjct: 301 ATIANMAPEYGATMGFFPVDEQTLDYLRLTGRTEAQIALVEAYAKAQGLWGDPKAEPRYT 360

Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420
           +      ++LDL  V+PS+AGP+RP+ R++L  V S+F    ++   ++     K     
Sbjct: 361 RT-----LELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGF--AKKAQTS 413

Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480
               L  G VAIA+ITSCTNT NPSV+I AGLLA+ AV  GL  KPWVKTS APGS+V  
Sbjct: 414 NGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVT 473

Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540
           EYL +AGL+ YLE LGF +VG+GCTTCIGNSG L  EI + I +  LV A VLSGNRNFE
Sbjct: 474 EYLERAGLLPYLEKLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFE 533

Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600
           GRI P+++AN+L SPPLVVAYALAG VR++L+ +P+G+ + G PVYL+DIWP  +EI + 
Sbjct: 534 GRIHPNIKANFLASPPLVVAYALAGTVRRDLMTEPLGKGKDGRPVYLKDIWPSSAEIDAL 593

Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660
           V   V  + ++K Y++VFKG   W  IE P+   Y WD KSTY+R PP+F+        I
Sbjct: 594 VAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIRRPPFFDFSMGPAASI 653

Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720
             + GAR L +LGD ITTDHISPAG+I   S A  YL++ GV + DFN +G+RRGNHEVM
Sbjct: 654 ATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVM 713

Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780
           MRGTF+N+RI N M+   GK+GG T+H PS E L IYDAAMRY+    PLVV AG EYG 
Sbjct: 714 MRGTFANVRIKNLMIP--GKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGT 771

Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840
           GSSRDWAAKGTRLLGV++VIAESFERIHRSNL+GMGV+P  F  G S ++L + G E  +
Sbjct: 772 GSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFD 831

Query: 841 IRKLKT-ISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895
           I  L   I PRQ+ TL IH +DG+ + VP++C IDT  E+++ K GGIL  VLRQL
Sbjct: 832 IEGLPGEIKPRQDVTLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYVLRQL 887


>gnl|CDD|162307 TIGR01341, aconitase_1, aconitate hydratase 1.  This model
           represents one form of the TCA cycle enzyme aconitate
           hydratase, also known as aconitase and citrate
           hydro-lyase. It is found in bacteria, archaea, and
           eukaryotic cytosol. It has been shown to act also as an
           iron-responsive element binding protein in animals and
           may have the same role in other eukaryotes.
          Length = 876

 Score = 1245 bits (3223), Expect = 0.0
 Identities = 518/879 (58%), Positives = 655/879 (74%), Gaps = 10/879 (1%)

Query: 21  YVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVES 80
           Y YYSL   E +G + IS+LP S+++LLE++LR  DG ++T+E I   +KW   +   ++
Sbjct: 3   YYYYSLKALEESGGK-ISKLPYSIRILLESVLRNLDGFSITEEDIENILKWKIGE-VADT 60

Query: 81  EVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSG 140
           E++++ +RV+MQDFTGVPAVVDLAAMR+A+  LGGDP+ INPLVPVDLVIDHS+ VDY G
Sbjct: 61  EIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYG 120

Query: 141 NKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNE 200
            + A+  N +LE++RN ERY+FLKW QK+F+NFRVVPPGTGI HQ+NLEYL   V+    
Sbjct: 121 TEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTGIIHQVNLEYLATVVFKAEV 180

Query: 201 NGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGS 260
           +GE  AYPD+ VGTDSHTTMIN LG+LGWGVGGIEAEAAMLG P  M +PEV+G ++TG 
Sbjct: 181 DGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGK 240

Query: 261 LQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFF 320
           LQEGVTATDLVLT+TQMLRK+GVV KFVEFFG G   + LADRATIANMAPEYGATCGFF
Sbjct: 241 LQEGVTATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFF 300

Query: 321 PVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVA 380
           P+D  T+ YLRL+GR    V+LVE Y + QG++ +  D E+  +T  ++LDL +V PSVA
Sbjct: 301 PIDDVTLQYLRLTGRDGDHVELVEKYARAQGLFYD--DSEEPRYTDVVELDLSDVEPSVA 358

Query: 381 GPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVK----GCDFHLKHGDVAIASIT 436
           GP+RP+ R+ L EV + F  E+ +          K P+K    G +  L+ G V IA+IT
Sbjct: 359 GPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKEPLKKKVNGQNKQLEDGAVVIAAIT 418

Query: 437 SCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALG 496
           SCTNT NPSVM+GAGLLA+ AV  GLK  P+VKTS APGS+V  +YL ++GL+ YLE LG
Sbjct: 419 SCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEELG 478

Query: 497 FSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPP 556
           F+LVG+GCTTCIGNSG L K + E I +  L V  VLSGNRNFEGRI P V+ NYL SPP
Sbjct: 479 FNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPP 538

Query: 557 LVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSD 616
           LVVAYALAGN+  NL  +PIG D+ G PVYLRDIWP + EI ++VN  V  +++KK+Y +
Sbjct: 539 LVVAYALAGNIDINLYTEPIGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYEN 598

Query: 617 VFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCLLGDKI 676
           +F+G+  W +I+ P  +TY WDEKSTY+R PP+FE + +   E+ DI GARIL LLGD I
Sbjct: 599 IFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEEMKQDPEEVEDIKGARILLLLGDSI 658

Query: 677 TTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLG 736
           TTDHISPAGSI   S A  YL++RGV  +DFN +G+RRGNHEVMMRGTF+NIRI N M+ 
Sbjct: 659 TTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMV- 717

Query: 737 EEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGV 796
            +GK+GGYT+H+P  +   +YDAAM+YK +  PLVV AG EYG+GSSRDWAAKGT+LLGV
Sbjct: 718 -KGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGV 776

Query: 797 RSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLE 856
           ++VIAESFERIHRSNL+GMGVIP  F +G   + L + GDE I+I  +K + P +E T+ 
Sbjct: 777 KAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDETIDIDGIKDLKPGKEVTVT 836

Query: 857 IHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQL 895
              S G       +  IDT  E+++ K+GGILQ VLR+ 
Sbjct: 837 FTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRKF 875


>gnl|CDD|185440 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional.
          Length = 898

 Score = 1211 bits (3134), Expect = 0.0
 Identities = 486/909 (53%), Positives = 626/909 (68%), Gaps = 36/909 (3%)

Query: 1   MSRSLNSFN-CRSILSVGGIDYVYYSLPKAEANGLQG--ISRLPCSMKVLLENLLRFEDG 57
            S   N F      L  GG  Y YYSL +     L    + +LP S++VLLE+ +R  D 
Sbjct: 9   SSSRPNPFEKVLKTLKDGG-SYKYYSLNE-----LHDPRLKKLPYSIRVLLESAVRNCDE 62

Query: 58  CTVTKEQIHAFVKWLDN--KGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGG 115
             VT + +   + W +N  K     E+ ++ +RVL+QDFTGVPAVVDLAAMRDA+  LGG
Sbjct: 63  FDVTSKDVENILNWEENSKKQI---EIPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGG 119

Query: 116 DPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRV 175
           DP  INPLVPVDLVIDHS+ VD+S + DA+  N+++E++RN ER+ FLKWG K+FKN  +
Sbjct: 120 DPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWGSKAFKNLLI 179

Query: 176 VPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIE 235
           VPPG+GI HQ+NLEYL + V+ K+     + YPD+ VGTDSHTTMIN LG+LGWGVGGIE
Sbjct: 180 VPPGSGIVHQVNLEYLARVVFNKD----GLLYPDSVVGTDSHTTMINGLGVLGWGVGGIE 235

Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295
           AEA MLG PISM+LPEVVGF++TG L E VTATDLVLT+T MLRK GVV KFVEF+G G 
Sbjct: 236 AEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATDLVLTVTSMLRKRGVVGKFVEFYGPGV 295

Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355
           +++ LADRATIANMAPEYGAT GFFP+D  T+DYL+ +GRS  +V+L+E Y K  G++R 
Sbjct: 296 KTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKANGLFRT 355

Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMN--------EYYK 407
               E++ ++  ++LDL  V PSVAGP+RP  R+ LS++   F   ++           +
Sbjct: 356 Y--AEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPE 413

Query: 408 KSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPW 467
           + H    K+  KG ++ L HG V IA+ITSCTNT NPSVM+ AGLLA+ AV  GLK  P+
Sbjct: 414 EKHEKKVKFTYKGKEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPY 473

Query: 468 VKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSL 527
           +KTS +PGS+V  +YL  +GL++YLE LGF   G+GC TCIGNSG L  E+SE I    L
Sbjct: 474 IKTSLSPGSKVVTKYLEASGLLKYLEKLGFYTAGYGCMTCIGNSGDLDPEVSEAITNNDL 533

Query: 528 VVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYL 587
           V A VLSGNRNFEGR+ P   ANYL SPPLVVAYALAG V  +   +P+G D+ G PV+L
Sbjct: 534 VAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLGSDKTGKPVFL 593

Query: 588 RDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP 647
           RDIWP   EIQ+   KYV  +++K+ YS++ +G+  W  ++VP+ + Y WDEKSTY+ NP
Sbjct: 594 RDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNP 653

Query: 648 PYFETISKHIPEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDF 707
           P+F+T+    P I  I  A  L  LGD ITTDHISPAG+I   S AA YL +RGV+ KDF
Sbjct: 654 PFFQTMELEPPPIKSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDF 713

Query: 708 NQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQ 767
           N +G RRGN EVM+RGTF+NIR+ N +    GK G  T+H P+ E++ IYDAA +YK + 
Sbjct: 714 NTYGARRGNDEVMVRGTFANIRLINKLC---GKVGPNTVHVPTGEKMSIYDAAEKYKQEG 770

Query: 768 VPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGIS 827
           VPL+V AG EYG+GSSRDWAAKG  L GV++VIAESFERIHRSNL+GMG++P  F  G +
Sbjct: 771 VPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFERIHRSNLVGMGILPLQFLNGEN 830

Query: 828 WKNLNIKGDEIINIR-KLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGG 886
             +L + G E  +I      + P Q+  + +    G  K    I  IDT  E+ + K+GG
Sbjct: 831 ADSLGLTGKEQFSIDLNSGELKPGQD--VTVKTDTG--KTFDTILRIDTEVEVEYFKHGG 886

Query: 887 ILQAVLRQL 895
           ILQ VLR+L
Sbjct: 887 ILQYVLRKL 895


>gnl|CDD|177699 PLN00070, PLN00070, aconitate hydratase.
          Length = 936

 Score = 1038 bits (2685), Expect = 0.0
 Identities = 459/890 (51%), Positives = 601/890 (67%), Gaps = 34/890 (3%)

Query: 23  YYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKGTVESEV 82
           YYSLP   A     I +LP S+++LLE+ +R  D   VTKE +   + W +N    + E+
Sbjct: 63  YYSLP---ALNDPRIDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDW-ENTSPKQVEI 118

Query: 83  SYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNK 142
            ++ +RVL+QDFTGVPAVVDLA MRDA+  LGGDP  INPLVPVDLVIDHS+ VD + ++
Sbjct: 119 PFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSE 178

Query: 143 DAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENG 202
           +AV  N +LE+QRN+ER+ FLKWG  +F+N  VVPPG+GI HQ+NLEYLG+ V+    N 
Sbjct: 179 NAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQVNLEYLGRVVF----NT 234

Query: 203 ENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQ 262
           + I YPD+ VGTDSHTTMI+ LG+ GWGVGGIEAEAAMLG P+SM+LP VVGF+++G L+
Sbjct: 235 DGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLR 294

Query: 263 EGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPV 322
           +GVTATDLVLT+TQMLRK GVV KFVEF+G G   + LADRATIANM+PEYGAT GFFPV
Sbjct: 295 DGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPV 354

Query: 323 DRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKV----AFTKKMKLDLGNVSPS 378
           D  T+ YL+L+GRS+  V ++EAY +   M+   +DY +      ++  ++LDL +V P 
Sbjct: 355 DHVTLQYLKLTGRSDETVAMIEAYLRANKMF---VDYNEPQQERVYSSYLELDLEDVEPC 411

Query: 379 VAGPRRPESRLSLSEVPSSFVTEMNEYY--------KKSHTLDEKYPVKGCDFHLKHGDV 430
           ++GP+RP  R+ L E+ + + + ++           K++ +   K+   G    L+HG V
Sbjct: 412 ISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHGQPAELRHGSV 471

Query: 431 AIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVE 490
            IA+ITSCTNT NPSVM+GAGL+A+ A   GL+ KPW+KTS APGS V  +YL+++GL +
Sbjct: 472 VIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQK 531

Query: 491 YLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEAN 550
           YL   GF +VG+GCTTCIGNSG L + ++  I +  +V A VLSGNRNFEGR+ P   AN
Sbjct: 532 YLNQQGFHIVGYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRAN 591

Query: 551 YLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLY 610
           YL SPPLVVAYALAG V  +  K+PIG  + G  V+ RDIWP + E+   V   V  D++
Sbjct: 592 YLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKDVFFRDIWPSNEEVAEVVQSSVLPDMF 651

Query: 611 KKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILC 670
           K  Y  + KG+  W  + VP    Y WD KSTY+  PPYF+ ++   P    +  A  L 
Sbjct: 652 KSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKNMTMSPPGPHGVKDAYCLL 711

Query: 671 LLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRI 730
             GD ITTDHISPAGSI   S AA YL +RGV  KDFN +G+RRGN E+M RGTF+NIRI
Sbjct: 712 NFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRI 771

Query: 731 CNYML-GEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789
            N +L GE G K   T+H P+ E+L ++DAAM+YK +    ++ AG EYG+GSSRDWAAK
Sbjct: 772 VNKLLKGEVGPK---TVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAK 828

Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIR---KLKT 846
           G  LLGV++VIA+SFERIHRSNL+GMG+IP  F  G     L + G E   I     +  
Sbjct: 829 GPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISE 888

Query: 847 ISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896
           I P Q+ T+    +  +F C       DT  E+ +  +GGIL  V+R L 
Sbjct: 889 IKPGQDVTVTTD-NGKSFTCT---LRFDTEVELAYFDHGGILPYVIRNLI 934


>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase,
           Fe/S-dependent.  Members of this family appear in an
           operon for the degradation of propionyl-CoA via
           2-methylcitrate. This family is homologous to aconitases
           A and B and appears to act the part as
           2-methylisocitrate dehydratase, the enzyme after PrpD
           and before PrpB. In Escherichia coli, which lacks a
           member of this family, 2-methylisocitrate dehydratase
           activity was traced to aconitase B (TIGR00117)
           (PubMed:12473114).
          Length = 858

 Score =  778 bits (2009), Expect = 0.0
 Identities = 379/880 (43%), Positives = 533/880 (60%), Gaps = 47/880 (5%)

Query: 18  GIDYVYYSLPKA-EANGLQGISRLPCSMKVLLENLLRFEDGCTVTKEQIHAFVKWLDNKG 76
           G D  Y+    A EA       +LP + ++L ENL+R         E + A +  +    
Sbjct: 10  GTDLDYFDTRAAVEAIKPGAYDKLPYTSRILAENLVR-----RCDPETLSASLLQI---- 60

Query: 77  TVESEVSYRF----SRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDH 132
            +E +    F    +RV+  D  G  A+VDLA +RDAI   GGDP  +NP+VP  L++DH
Sbjct: 61  -IERKRDLDFPWYPARVVCHDILGQTALVDLAGLRDAIAEKGGDPAQVNPVVPTQLIVDH 119

Query: 133 SLIVDYSG-NKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYL 191
           SL V+Y G + DA  +N+ +E +RNE+R+ F+ W + +FKN  V+P G GI HQINLE +
Sbjct: 120 SLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMHQINLEKM 179

Query: 192 GQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPE 251
              +  KN     +A+PDTCVGTDSHT  ++ALG++  GVGG+EAE  MLG    M LP+
Sbjct: 180 SPVIQVKN----GVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPD 235

Query: 252 VVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAP 311
           +VG E+TG  Q G+TATD+VL +T+ LRKE VVS ++EFFG G  ++ + DRATI+NM P
Sbjct: 236 IVGVELTGKRQPGITATDIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTP 295

Query: 312 EYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLD 371
           EYGAT   F +D  TIDYL+L+GR   +V LVE Y K  G+W + +  +   + + ++ D
Sbjct: 296 EYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAKAAGLWADSL--KHAVYERVLEFD 353

Query: 372 LGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVA 431
           L +V  ++AGP  P +R+  S++ +  +       ++   L            +  G V 
Sbjct: 354 LSSVVRNMAGPSNPHARVPTSDLAARGIA--GPAEEQPEGL------------MPDGAVI 399

Query: 432 IASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEY 491
           IA+ITSCTNT NP  ++ AGLLARNA + GLK KPWVKTS APGS+V+  YL +AGL+  
Sbjct: 400 IAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPE 459

Query: 492 LEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANY 551
           LE LGF +V F CTTC G SGAL   I + I  + L    VLSGNRNF+GRI P  +  +
Sbjct: 460 LEQLGFGIVAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAF 519

Query: 552 LLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYK 611
           L SPPLVVAYA+AG +R ++ KD +G D  G P+ L+DIWP D EI + V   V  + ++
Sbjct: 520 LASPPLVVAYAIAGTIRFDIEKDVLGVDADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFR 579

Query: 612 KKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEIVDICGARILCL 671
           K Y  +F  D +    +   S  Y W   STY+R PPY+E     +     + G R L +
Sbjct: 580 KVYIPMFDLDDT----QSAVSPLYDWRPMSTYIRRPPYWEGA---LAGERTLKGMRPLAI 632

Query: 672 LGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRIC 731
           LGD ITTDH+SP+ +I   SAA  YL + G+ E+DFN + T RG+H    R TF+N ++ 
Sbjct: 633 LGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLF 692

Query: 732 NYMLGEEG--KKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAK 789
           N M+  +G  K+G      P  +   +++A   Y   + PL++ AG +YG GSSRDWAAK
Sbjct: 693 NEMVKNDGSVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAK 752

Query: 790 GTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISP 849
           G RL GV +++AE FERIHR+NL+GMGV+P  F  G +   L + G E  ++  +  I+P
Sbjct: 753 GVRLAGVEAIVAEGFERIHRTNLVGMGVLPLEFKPGTNRHTLGLDGTETFDV--VGEITP 810

Query: 850 RQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQ 889
           R + TL +   +G    VP+ C +DT +E++  + GG+LQ
Sbjct: 811 RADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQ 850


>gnl|CDD|180896 PRK07229, PRK07229, aconitate hydratase; Validated.
          Length = 646

 Score =  255 bits (654), Expect = 4e-68
 Identities = 222/843 (26%), Positives = 331/843 (39%), Gaps = 248/843 (29%)

Query: 80  SEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLV---IDHSLIV 136
            E++ R  + L QD TG  A +   AM        G  +     V  +L    +DH+L+ 
Sbjct: 23  EEIAIRIDQTLTQDATGTMAYLQFEAM--------GLDR-----VKTELSVQYVDHNLLQ 69

Query: 137 DYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVV--PPGTGICHQINLEYLGQS 194
             +  +             N + +RFL   Q     + +    PG GICHQ++LE     
Sbjct: 70  --ADFE-------------NADDHRFL---QSVAAKYGIYFSKPGNGICHQVHLE----- 106

Query: 195 VWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVV 253
                      A+P  T +G+DSHT     LG+L  G GG++   AM G P  + +P+VV
Sbjct: 107 ---------RFAFPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVV 157

Query: 254 GFEVTGSLQEGVTATDLVLTITQMLRKEGV---VSKFVEFFGSGFESMVLADRATIANMA 310
           G ++TG L   V+A D++L    +LR+  V   V K +E+FG G  ++ + +RATI NM 
Sbjct: 158 GVKLTGKLPPWVSAKDVILE---LLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMG 214

Query: 311 PEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKL 370
            E GAT   FP D  T ++L+  GR        + + ++      D +Y++V     +++
Sbjct: 215 AELGATTSIFPSDERTREFLKAQGRE-------DDWVELLA--DPDAEYDEV-----IEI 260

Query: 371 DLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDV 430
           DL  + P +AGP                           H+ D   PV      +    V
Sbjct: 261 DLSELEPLIAGP---------------------------HSPDNVVPVS----EVAGIKV 289

Query: 431 AIASITSCTNTFNPS---VMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAG 487
               I SCT   N S   +M  A +L       G K  P V     PGS+   E L + G
Sbjct: 290 DQVLIGSCT---NSSYEDLMRAASIL------KGKKVHPKVSLVINPGSRQVLEMLARDG 340

Query: 488 LVEYLEALGFSLVGFGCTTCIGNSGALK-KEISEVIHQKSLVVAGVLSGNRNFEGRISPD 546
            +  L A G  ++   C  CIG   A     +S            + + NRNF GR S  
Sbjct: 341 ALADLIAAGARILENACGPCIGMGQAPATGNVS------------LRTFNRNFPGR-SGT 387

Query: 547 VEAN-YLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSFV---N 602
            +A  YL SP    A AL G      I DP     +         +PK  E + F     
Sbjct: 388 KDAQVYLASPETAAASALTGV-----ITDPRTLALENGE------YPKLEEPEGFAVDDA 436

Query: 603 KYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNP-----PYFETISKHI 657
             +               D S  ++EV              VR P     P  E     +
Sbjct: 437 GIIAP-----------AEDGS--DVEV--------------VRGPNIKPLPLLEP----L 465

Query: 658 PEIVDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNH 717
           P++++    ++L  +GD ITTDHI PAG        A +L  R                 
Sbjct: 466 PDLLE---GKVLLKVGDNITTDHIMPAG--------AKWLPYR----------------- 497

Query: 718 EVMMRGTFSNI-RICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGV 776
                   SNI  I  ++                  E        R K +Q   +V  G 
Sbjct: 498 --------SNIPNISEFVF-----------------EGVDNTFPERAK-EQGGGIVVGGE 531

Query: 777 EYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLN---- 832
            YG GSSR+ AA   R LGV++V+A+SF RIH++NLI  G++P  F       +      
Sbjct: 532 NYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTF------ADPADYDK 585

Query: 833 IKGDEIINIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVL 892
           I+  +++ I  L+   P    T+     D   +    +    +  +I  L  GG L  + 
Sbjct: 586 IEEGDVLEIEDLREFLPGGPLTVVNVTKDEEIEVRHTL----SERQIEILLAGGALNLIK 641

Query: 893 RQL 895
           ++L
Sbjct: 642 KKL 644


>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex
           type.  This model represents a small family of proteins
           homologous (and likely functionally equivalent to)
           aconitase 1. Members are found, so far in the anaerobe
           Clostridium acetobutylicum, in the microaerophilic,
           early-branching bacterium Aquifex aeolicus, and in the
           halophilic archaeon Halobacterium sp. NRC-1. No member
           is experimentally characterized.
          Length = 658

 Score =  226 bits (578), Expect = 1e-59
 Identities = 185/720 (25%), Positives = 273/720 (37%), Gaps = 179/720 (24%)

Query: 155 RNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVG 213
           +N + ++FL      F  +    PG GICH ++ E              N A P  T +G
Sbjct: 70  KNADDHKFLMSAAGKFGAW-FSKPGNGICHNVHKE--------------NFAAPGKTLLG 114

Query: 214 TDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLT 273
           +DSHT     LG+L  G GGI+  AAM G    + +PE+VG  + G L E  TA D++L 
Sbjct: 115 SDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIILE 174

Query: 274 ITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLS 333
           + + L  +G + K  E+FG G E + + +RATI NM  E GAT   FP D  T  +L   
Sbjct: 175 LLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSDDITEAWLAAF 234

Query: 334 GRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSE 393
            R +  VDL             D D E   +  ++++DL ++ P +A P  P++ + + E
Sbjct: 235 DREDDFVDL-----------LADADAE---YADEIEIDLSDLEPLIAEPHMPDNVVPVRE 280

Query: 394 VPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLL 453
           +    V ++                                I SCTN     ++  A LL
Sbjct: 281 IAGIEVDQV-------------------------------MIGSCTNGAFEDLLPAAKLL 309

Query: 454 ARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGA 513
                  G +     + + APGS+ + E + Q G +    A G + +   C  CIG    
Sbjct: 310 ------EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAACGACIG---- 359

Query: 514 LKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNVRKNLIK 573
                  +    +     + S NRNFEGR   +    YL SP    A A+AG      I 
Sbjct: 360 -------IGFAPASDGVSLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGE-----II 407

Query: 574 DPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESE 633
           DP                                    +  +D  +GD      E+ E  
Sbjct: 408 DP------------------------------------RDLADD-EGDLEAIGFEMGEKF 430

Query: 634 TYMWDEKSTYVRNP-----------PYFETISKHIPEIVDICGARILCLLGDKITTDHIS 682
              +D     +              P  + + +  P   DI G     ++ D ITTDHI 
Sbjct: 431 PGGYDAADIDIIPKEEREDDDIIKGPNIKPLPEFDPLGADIEG-ETALIMEDNITTDHII 489

Query: 683 PAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVMMRGTFSNIRICNYMLGEEGKKG 742
           PAG+  L+       R                           SNI      + E     
Sbjct: 490 PAGADILK------FR---------------------------SNI----EAISE----- 507

Query: 743 GYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAE 802
            +T+H    E     + A          ++ AG  YG GSSR+ AA     LGV +VIA+
Sbjct: 508 -FTLHRIDDE---FAERAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAK 563

Query: 803 SFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIINIRKLKTISPRQESTLEIHYSDG 862
           SF RIH +NL   G++P  F     +    + GD+I     L       E    I+ +D 
Sbjct: 564 SFARIHHANLFNFGILPLEFDNEEDYAKFEL-GDDIEIPDDLAAALADGEDEFTINKNDD 622


>gnl|CDD|162306 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial.
           This model represents mitochondrial forms of the TCA
           cycle enzyme aconitate hydratase, also known as
           aconitase and citrate hydro-lyase.
          Length = 745

 Score =  225 bits (574), Expect = 5e-59
 Identities = 214/807 (26%), Positives = 322/807 (39%), Gaps = 179/807 (22%)

Query: 88  RVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTR 147
           RV MQD +   A++             G PQ     VP  +  DH LIV   G    + R
Sbjct: 58  RVAMQDASAQMALLQFMT--------CGLPQ---VAVPASIHCDH-LIVGQKGGDKDLAR 105

Query: 148 NKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAY 207
                   N+E + FL+   K +       PG+GI HQI LE              N A+
Sbjct: 106 AIAT----NKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLE--------------NYAF 146

Query: 208 PD-TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVT 266
           P    +GTDSHT     LG +  GVGG +A  A+ G P  +  P+++G ++TG L    +
Sbjct: 147 PGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTS 206

Query: 267 ATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGT 326
             D++L +  +L   G     VE+FG G ES+     ATI NM  E GAT   FP +   
Sbjct: 207 PKDIILKLAGLLTVRGGTGYIVEYFGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAM 266

Query: 327 IDYLRLSGRSNSRVDL-VEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRP 385
             YL+ + R+    D     Y+  +    E   Y+++     +++DL  + P + GP  P
Sbjct: 267 SRYLKATNRAQIAEDAKTGQYSFFKLKADEGAQYDEL-----IEIDLSKLEPHINGPFTP 321

Query: 386 ESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPS 445
           +    +S+            +K++      +P K          ++   I SCTN+ +  
Sbjct: 322 DLSTPISK------------FKET-VQKNGWPEK----------LSAGLIGSCTNS-SYE 357

Query: 446 VMIGAGLLARNAVRAGLKSK-PWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGC 504
            M     + ++A +AGLK K P+  T   PGS+     L + G+++  E  G  ++   C
Sbjct: 358 DMSRCASIVKDAEQAGLKPKSPFYVT---PGSEQIRATLERDGILQTFEKFGGIVLANAC 414

Query: 505 TTCIGN---SGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEA-NYLLSPPLVVA 560
             CIG       +KK     I         + S NRNF GR   +    N+L SP +V A
Sbjct: 415 GPCIGQWDRKDDVKKGEPNTI---------LTSYNRNFRGRNDGNPATMNFLASPEIVTA 465

Query: 561 YALAGNVRKN----LIKDPIGEDQQGSPVYLRDIWPKDSEIQSFVNKYVTCDLYKKKYS- 615
            + AG++  N     +  P G++ +          PK  E            L +K +  
Sbjct: 466 MSYAGSLTFNPLTDSLTTPDGKEFKFPA-------PKGDE------------LPEKGFEA 506

Query: 616 --DVFKG--DSSWWNIEV---PESETYM-------WDEKSTYVRNPPYFETISKHIPEIV 661
             D F+    S   N+EV   P S+          W+ K                     
Sbjct: 507 GRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPWNGK--------------------- 545

Query: 662 DICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRG----VKEKDFNQFGTRRGNH 717
           D+ G R+L  +  K TTDHIS AG          +L+ +G    +               
Sbjct: 546 DLSGLRVLIKVTGKCTTDHISAAG---------PWLKYKGHLDNISNNTLIG-AVNAETG 595

Query: 718 EVMMRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVE 777
           EV            N     +G KG             I + A  +K    P VV A   
Sbjct: 596 EV------------NKAYDLDGSKGT------------IPELARDWKARGQPWVVVAEHN 631

Query: 778 YGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDE 837
           YG GS+R+ AA   R LG R +I +SF RIH +NL   GV+P  F     +  +   GDE
Sbjct: 632 YGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQ-PGDE 690

Query: 838 I--INIRKLKTISPRQESTLEIHYSDG 862
           +  +N+ ++       E  L +   +G
Sbjct: 691 VATLNLYEMLKNGGGGEVDLRVTKKNG 717


>gnl|CDD|179006 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit;
           Reviewed.
          Length = 418

 Score =  154 bits (392), Expect = 9e-38
 Identities = 136/493 (27%), Positives = 191/493 (38%), Gaps = 130/493 (26%)

Query: 89  VLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPLVPVDLVIDHSLIVDYSGNKDAVTRN 148
           V+  D TG  A+               DP  I       +V DH                
Sbjct: 31  VMAHDITGPLAI---KEFEKIGGDKVFDPSKIV------IVFDH------------FVPA 69

Query: 149 KDLEYQRNEERYRFL-KWGQK-SFKNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIA 206
           KD    ++ E+ + L ++ ++    NF  V  G GICHQ+  E             + + 
Sbjct: 70  KD---IKSAEQQKILREFAKEQGIPNFFDV--GEGICHQVLPE-------------KGLV 111

Query: 207 YP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGV 265
            P D  VG DSHT    ALG    G+G  +  AAM        +PE +   + G L  GV
Sbjct: 112 RPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGV 171

Query: 266 TATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRG 325
           TA D++L I   +  +G   K +EF G   E++ + +R T+ANMA E GA  G F  D  
Sbjct: 172 TAKDVILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFAPDEK 231

Query: 326 TIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRP 385
           T++YL+   R+       ++         ED +YE+V      ++DL  + P VA P  P
Sbjct: 232 TLEYLK--ERAGRDYKPWKSD--------EDAEYEEV-----YEIDLSKLEPQVAAPHLP 276

Query: 386 ESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNTFNPS 445
           ++   +SEV                   E   V          D     I SCTN     
Sbjct: 277 DNVKPVSEV-------------------EGTKV----------DQVF--IGSCTN----- 300

Query: 446 VMIGAGLLA--RNAVR--AGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVG 501
                G L   R A     G K  P V+    P SQ  Y   ++ GL+E     G  +  
Sbjct: 301 -----GRLEDLRIAAEILKGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVST 355

Query: 502 FGCTTCIGNSGALKKEISEVIHQKSLVVAGVL--------SGNRNFEGRI-SPDVEANYL 552
             C  C+G             H       GVL        + NRNF+GR+ SP+ E  YL
Sbjct: 356 PTCGPCLG------------GHM------GVLAPGEVCLSTTNRNFKGRMGSPESEV-YL 396

Query: 553 LSPPLVVAYALAG 565
            SP +  A A+ G
Sbjct: 397 ASPAVAAASAVTG 409


>gnl|CDD|162691 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit.
            This subfamily is a subset of the larger HacA family
           (Homoaconitate hydratase family, TIGR01343) and is most
           closely related to the 3-isopropylmalate dehydratase,
           large subunits which form TIGR00170. This subfamily
           includes the members of TIGR01343 which are gene
           clustered with other genes of leucine biosynthesis. The
           rest of the subfamily includes mainly archaeal species
           which exhibit two hits to this model. In these cases it
           is possible that one or the other of the hits does not
           have a 3-isopropylmalate dehydratase activity but rather
           one of the other related aconitase-like activities.
          Length = 412

 Score =  149 bits (378), Expect = 3e-36
 Identities = 111/395 (28%), Positives = 160/395 (40%), Gaps = 80/395 (20%)

Query: 174 RVVPPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVG 232
            V   G GICHQ+ +E             E  A P    VG DSHT    A+G    G+G
Sbjct: 88  PVFDVGEGICHQVLVE-------------EGYAGPGMVVVGGDSHTCTSGAVGAFATGMG 134

Query: 233 GIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFG 292
             +   A+      + +PE +   V G  +EGVTA D+ L I   L  +G     +EFFG
Sbjct: 135 ATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDVALHIVGELGADGATYMAIEFFG 194

Query: 293 SGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGM 352
              E+M + +R T+ NMA E GA  G    D  T +YL+       R+            
Sbjct: 195 LPIEAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEFRILRP--------- 245

Query: 353 WREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTL 412
                 Y+       +++DL ++ P VA P   ++   +S+V     TE+++ +      
Sbjct: 246 -DPGAKYDDE-----IEIDLSDLEPLVAVPHSVDNVRPVSDVEG---TEIDQVF------ 290

Query: 413 DEKYPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSC 472
                                 I SCTN     + I A +L       G +  P V+   
Sbjct: 291 ----------------------IGSCTNGRIEDLRIAAEIL------EGRRVHPDVRLIV 322

Query: 473 APGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAG 531
            P S+  YE  ++ G++  L   G  +   GC  C+G + G L     EV          
Sbjct: 323 VPASRKVYERALEEGIILTLIRAGAIICPPGCGPCLGRHMGVLGD--GEVC--------- 371

Query: 532 VLSGNRNFEGRI-SPDVEANYLLSPPLVVAYALAG 565
           V + NRNF GR+ SPD E  YL SP    A A+ G
Sbjct: 372 VSTTNRNFRGRMGSPDAEI-YLASPATAAASAVEG 405


>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein.  This
           model represents a subfamily of proteins consisting of
           aconitase, homoaconitase, 3-isopropylmalate dehydratase,
           and uncharacterized proteins. The majority of the
           members of this family have been designated as
           3-isopropylmalate dehydratase large subunit (LeuC) in
           microbial genome annotation, but the only characterized
           member is Thermus thermophilus homoaconitase, an enzyme
           of a non-aspartate pathway of Lys biosynthesis.
          Length = 412

 Score =  134 bits (338), Expect = 1e-31
 Identities = 108/405 (26%), Positives = 158/405 (39%), Gaps = 102/405 (25%)

Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYP-DTCVGTDSHTTMINALGILGWGVGGIE 235
             G GICHQ+  E             E +  P D  VG DSHT    ALG    G+G  +
Sbjct: 92  DVGEGICHQVLPE-------------EGLVKPGDLVVGADSHTCTYGALGAFATGMGSTD 138

Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGF 295
              A+        +PE +   +TG L  GVTA D++L +   +  +G     +EF G   
Sbjct: 139 IAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKDVILEVIGQIGVDGATYMAMEFHGETI 198

Query: 296 ESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWRE 355
           ++M + +R T+ANMA E G   G    D  T  YL+   +        E +   +    E
Sbjct: 199 KNMTMEERMTLANMAIEAGGKTGIIEPDEKTRAYLKERYK--------EPFRVYKS--DE 248

Query: 356 DIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEK 415
           D +Y K      +++D   + P VA P   ++   +SEV      E+++ +         
Sbjct: 249 DAEYAKE-----VEIDASQLEPVVAAPHNVDNVHPVSEVEG---IEVDQVF--------- 291

Query: 416 YPVKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLA--RNAVR--AGLKSKPWVKTS 471
                              I SCTN          G +   R A +   G K  P V+  
Sbjct: 292 -------------------IGSCTN----------GRIEDLRVAAKILKGRKVAPDVRLI 322

Query: 472 CAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAG 531
             P S+  Y   ++ GL+E     G  +   GC  C+G             HQ      G
Sbjct: 323 VIPASRAVYLQALKEGLIEIFVKAGAVVSTPGCGPCLG------------RHQ------G 364

Query: 532 VL--------SGNRNFEGRI-SPDVEANYLLSPPLVVAYALAGNV 567
           VL        + NRNF+GR+  P+ E  YL SP    A A+ G +
Sbjct: 365 VLAPGEVCISTSNRNFKGRMGDPNAEI-YLASPATAAASAVKGRI 408


>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit.
           This model along with TIGR00170 describe clades which
           consist only of LeuC sequences. Here, the genes from
           Pyrococcus furiosus, Clostridium acetobutylicum,
           Thermotoga maritima and others are gene clustered with
           related genes from the leucine biosynthesis pathway.
          Length = 419

 Score =  133 bits (336), Expect = 2e-31
 Identities = 110/365 (30%), Positives = 155/365 (42%), Gaps = 63/365 (17%)

Query: 203 ENIAYP-DTCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSL 261
           E I  P D  +G DSHT    ALG    GVG  +    M        +PE + F + G L
Sbjct: 108 EGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKL 167

Query: 262 QEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFP 321
           +  VT  DL+L I  ++  +G + K +EF G G + + + DR TIANMA E GA  G FP
Sbjct: 168 KPWVTGKDLILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFP 227

Query: 322 VDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAG 381
           VD  TI+Y +  GR      + +A         ED  Y +V     +++DL  + P VA 
Sbjct: 228 VDEITIEYEK--GRGKREEKIYKA--------DEDAKYVRV-----IEIDLSELEPQVAF 272

Query: 382 PRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIASITSCTNT 441
           P  PE+   +SE                     K  +K          +    I SCTN 
Sbjct: 273 PHLPENTKDISEA-------------------GKEEIK----------IDQVVIGSCTNG 303

Query: 442 FNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVE-YLEALGFSLV 500
               + + A +L       G    P V+    PGSQ  Y   ++ GL+E ++EA G  + 
Sbjct: 304 RLEDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEA-GAVVS 356

Query: 501 GFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVA 560
              C  C+G    +  E  E           + + NRNF GR+       YL SP +  A
Sbjct: 357 TPTCGPCLGGHMGILAE-GER---------AISTTNRNFVGRMGHPKSEVYLASPAVAAA 406

Query: 561 YALAG 565
            A+ G
Sbjct: 407 SAIKG 411


>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit;
           Provisional.
          Length = 471

 Score =  119 bits (300), Expect = 4e-27
 Identities = 118/433 (27%), Positives = 163/433 (37%), Gaps = 88/433 (20%)

Query: 171 KNFRVVPPGTGICHQINLEYLGQSVWTKNENGENIAYPD-TCVGTDSHTTMINALGILGW 229
           + F V  P  GI H +  E LG            +  P    V  DSHTT   ALG L +
Sbjct: 98  RLFDVDDPRQGIVHVVAPE-LG------------LTLPGMVIVCGDSHTTTYGALGALAF 144

Query: 230 GVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVE 289
           G+G  E E  +    +    P+ +   V G L  GVTA DL+L +   +  +G     +E
Sbjct: 145 GIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAKDLILALIARIGADGATGYAIE 204

Query: 290 FFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGR----SNSRVDLVEA 345
           F G    ++ +  R T+ NMA E GA  G    D  T DYLR  GR      +  D   A
Sbjct: 205 FAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLR--GRPRAPKGALWDAALA 262

Query: 346 YTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSE-VPSSFVTEMNE 404
           Y      WR         F +++++D  +++P V     P+  + ++  VP         
Sbjct: 263 Y------WRTLRSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVP--------- 307

Query: 405 YYKKSHTLDEKYPVKGCDF-------HLKHG----DVAI--ASITSCTNTFNPSVMIGAG 451
                    E  P +            L  G     + I    I SCTN          G
Sbjct: 308 -----DPAAEADPARRAAMERALDYMGLTPGTPLAGIPIDRVFIGSCTN----------G 352

Query: 452 ----LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTC 507
               L A  AV  G K  P V+    PGS          GL     A GF     GC+ C
Sbjct: 353 RIEDLRAAAAVLRGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGFEWREPGCSMC 412

Query: 508 IGNSGALKKEISEVIHQKSLVVAG---VLSGNRNFEGRISPDVEANYLLSPPLVVAYALA 564
           +  +               ++  G     + NRNFEGR  P     +L+SP +V A A+A
Sbjct: 413 LAMND-------------DVLAPGERCASTTNRNFEGRQGPGART-HLMSPAMVAAAAVA 458

Query: 565 G---NVRKNLIKD 574
           G   +VR  L   
Sbjct: 459 GHITDVRSLLQAG 471


>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase.  Homoaconitase, aconitase,
           and 3-isopropylmalate dehydratase have similar overall
           structures, but 3-isopropylmalate dehydratase is split
           into large (leuC) and small (leuD) chains in eubacteria.
           Several pairs of archaeal proteins resemble leuC and
           leuD over their lengths but are even closer to the
           respective domains of homoaconitase, and their identity
           is uncertain.
          Length = 712

 Score =  109 bits (274), Expect = 3e-24
 Identities = 109/410 (26%), Positives = 165/410 (40%), Gaps = 73/410 (17%)

Query: 177 PPGTGICHQINLEYLGQSVWTKNENGENIAYPDT-CVGTDSHTTMINALGILGWGVGGIE 235
           P G GI HQI +E             E  A+P    V +DSH+ M   LG LG  +   +
Sbjct: 97  PAGRGIGHQIMIE-------------EGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTD 143

Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSG- 294
           A A          +P V   E  G L  GV+  D+++ +  +  K+ V++  +EF GS  
Sbjct: 144 AAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIVALCGLFNKDDVLNHAIEFTGSED 203

Query: 295 -FESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR----------LSGRSNSRVDLV 343
              ++ +  R TIANM  E+GA  G FP+D+  ID+L+            G   +     
Sbjct: 204 SLNALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPAAER 263

Query: 344 EAYTKVQGMWREDIDYEKVA-FTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEM 402
             +  ++      +  +K A + K++ +DL ++S  V+GP                    
Sbjct: 264 FTHPALEEKAEIPLKADKDAHYAKELFIDLASLSHYVSGPNS------------------ 305

Query: 403 NEYYKKSHTLDEKYPVKGCDFHLKHGDVAI--ASITSCTNTFNPSVMIGAGLLARNAVRA 460
               K ++ L +          L+  D+ I  A + SCTN+    +   A +    A + 
Sbjct: 306 ---VKVANPLKD----------LEAQDIKIDKAYLVSCTNSRASDIAAAADVFCEAADKN 352

Query: 461 GLKSK---PWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKE 517
           G K     P V+   A  S          G  E L   G   +  GC  CIG    L  E
Sbjct: 353 GGKINKIAPGVEFYIAAASIEEEAAAEGNGAWEKLLEAGAIPLPAGCGPCIGLGAGLL-E 411

Query: 518 ISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAGNV 567
             EV         G+ + NRNF+GR+       YL SP +V A AL G +
Sbjct: 412 PGEV---------GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI 452


>gnl|CDD|161741 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit.
           Several pairs of archaeal proteins resemble the leuC and
           leuD pair in length and sequence but even more closely
           resemble the respective domains of homoaconitase, and
           their identity is uncertain. These homologs are now
           described by a separate model of subfamily (rather than
           equivalog) homology type, and the priors and cutoffs for
           this model have been changed to focus this equivalog
           family more narrowly.
          Length = 465

 Score =  104 bits (260), Expect = 1e-22
 Identities = 97/359 (27%), Positives = 142/359 (39%), Gaps = 27/359 (7%)

Query: 210 TCVGTDSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATD 269
           T V  DSHT+   A G L +G+G  E E  +    +     + +  EV G L  G+TA D
Sbjct: 123 TIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAKD 182

Query: 270 LVLTITQMLRKEGVVSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDY 329
           ++L I       G     +EF G     + +  R T+ NMA E GA  G    D  T +Y
Sbjct: 183 IILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEY 242

Query: 330 LRLSGRSNSRVDLVEAYTKVQGMWREDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPESRL 389
            +  GR ++     + + K    W+     E   F   + L+  ++SP V     P   L
Sbjct: 243 CK--GRPHAPKG--KEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNPGQVL 298

Query: 390 SL-SEVPSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHGDVAIAS--ITSCTNTFNPSV 446
            + SEVP        +   K+ + +      G +      D+ +    I SCTN    S 
Sbjct: 299 PVNSEVPDP--ESFADPVDKA-SAERALAYMGLEPGTPLKDIKVDKVFIGSCTN----SR 351

Query: 447 MIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLVQAGLVEYLEALGFSLVGFGCTT 506
           +    L A  AV  G K    VK    PGS +      + GL +     GF     GC+ 
Sbjct: 352 I--EDLRAAAAVIKGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGFEWREPGCSM 409

Query: 507 CIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFEGRISPDVEANYLLSPPLVVAYALAG 565
           C+G +     E                + NRNFEGR        +L+SP +  A A+ G
Sbjct: 410 CLGMNNDRLPEGERCAS----------TSNRNFEGRQGRGGR-THLVSPAMAAAAAIHG 457


>gnl|CDD|180112 PRK05478, PRK05478, isopropylmalate isomerase large subunit;
           Validated.
          Length = 466

 Score = 83.6 bits (208), Expect = 2e-16
 Identities = 110/388 (28%), Positives = 151/388 (38%), Gaps = 84/388 (21%)

Query: 215 DSHTTMINALGILGWGVGGIEAEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTI 274
           DSHT+   A G L +G+G  E E  +    +    P+ +  EV G L  GVTA D++L I
Sbjct: 128 DSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAKDIILAI 187

Query: 275 TQMLRKEGV---VSKFVEFFGSGFESMVLADRATIANMAPEYGATCGFFPVDRGTIDYLR 331
              + K G        +EF G    ++ +  R TI NM+ E GA  G    D  T +YL+
Sbjct: 188 ---IGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEYLK 244

Query: 332 LSGRSNSRVDLVEAYTKVQGMWR-----EDIDYEKVAFTKKMKLDLGNVSPSVAGPRRPE 386
             GR  +     E + K    W+     ED  ++KV     + LD  ++ P V     P 
Sbjct: 245 --GRPFAPKG--EDWDKAVAYWKTLKSDEDAVFDKV-----VTLDAADIEPQVTWGTNPG 295

Query: 387 SRLSLSEV---PSSFVTEMNEYYKKSHTLDEKYPVKGCDFHLKHG----DVAI--ASITS 437
             +S+      P  F   +     K  + +      G    LK G    D+ I    I S
Sbjct: 296 QVISIDGKVPDPEDFADPV-----KRASAERALAYMG----LKPGTPITDIKIDKVFIGS 346

Query: 438 CTNTFNPSVMIGAG----LLARNAVRAGLKSKPWVKTSCAPGSQVSYEYLV--QA---GL 488
           CTN               L A  AV  G K  P V+    PGS      LV  QA   GL
Sbjct: 347 CTN----------SRIEDLRAAAAVVKGRKVAPGVRALVVPGSG-----LVKAQAEAEGL 391

Query: 489 VEYLEALGFSLVGFGCTTCIG-NSGALKKEISEVIHQKSLVVAGVLSG---NRNFEGRIS 544
            +     GF     GC+ C+  N   L                G       NRNFEGR  
Sbjct: 392 DKIFIEAGFEWREPGCSMCLAMNPDKLP--------------PGERCASTSNRNFEGRQG 437

Query: 545 PDVEANYLLSPPLVVAYALAG---NVRK 569
                 +L+SP +  A A+ G   +VR+
Sbjct: 438 KGGR-THLVSPAMAAAAAITGHFVDVRE 464


>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional.
          Length = 751

 Score = 58.5 bits (142), Expect = 8e-09
 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 35/214 (16%)

Query: 176 VPPGTGICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIE 235
           VPP   + HQ   E +          G+ I      +G+DSHT    ALG +  G GG E
Sbjct: 123 VPPHIAVIHQYMREMMAGG-------GKMI------LGSDSHTRY-GALGTMAVGEGGGE 168

Query: 236 AEAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVV-SKFVEFFGSG 294
               +L     +  P VV   +TG    GV   D+ L I   + K G V +K +EF G G
Sbjct: 169 LVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVALAIIGAVFKNGYVKNKVMEFVGPG 228

Query: 295 FESMVLADRATIANMAPEYGATC--GFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGM 352
             ++    R  +  M  E   TC    +  D    ++L L GR        + Y +    
Sbjct: 229 VSALSTDFRNGVDVMTTE--TTCLSSIWQTDEEVHNWLALHGRG-------QDYCE---- 275

Query: 353 WREDIDYEKVAFTKKM-KLDLGNVSPSVAGPRRP 385
               ++ + +A+      +DL  + P +A P  P
Sbjct: 276 ----LNPQPMAYYDGCISVDLSAIKPMIALPFHP 305



 Score = 36.9 bits (86), Expect = 0.026
 Identities = 22/51 (43%), Positives = 36/51 (70%), Gaps = 2/51 (3%)

Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFE-RIHRSNLIGMGVIPF 820
           +V+A V+ G+GS+R+ AA   R+LG  + IAE +  + +RSN+I  G++PF
Sbjct: 631 MVYA-VKPGDGSAREQAASCQRVLGGLANIAEEYATKRYRSNVINWGMLPF 680


>gnl|CDD|184460 PRK14023, PRK14023, homoaconitate hydratase small subunit;
           Provisional.
          Length = 166

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 20/50 (40%), Positives = 36/50 (72%)

Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPF 820
           ++ AG  +G GSSR++A +  ++LG+ ++IA+S+ RI   NL+ +G+ PF
Sbjct: 52  ILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPF 101


>gnl|CDD|162692 TIGR02087, LEUD_arch, 3-isopropylmalate dehydratase, small subunit.
            This subfamily is most closely related to the
           3-isopropylmalate dehydratase, small subunits which form
           TIGR00171. This subfamily includes the members of
           TIGR02084 which are gene clustered with other genes of
           leucine biosynthesis. The rest of the subfamily includes
           mainly archaeal species which exhibit two hits to this
           model. In these cases it is possible that one or the
           other of the hits does not have a 3-isopropylmalate
           dehydratase activity but rather one of the other related
           aconitase-like activities.
          Length = 154

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 21/124 (16%)

Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKN 830
           V+ AG  +G GSSR+ AA   +  G+ +VIAESF RI   N I +G+         +   
Sbjct: 50  VIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLI-----EAKTE 104

Query: 831 LNIKGDEI-INIRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQ 889
               GDE+ +++   +      E           +K  P+    D L EI  L+ GG+L+
Sbjct: 105 GIKDGDEVTVDLETGEIRVNGNE----------EYKGEPL---PDFLLEI--LREGGLLE 149

Query: 890 AVLR 893
            + +
Sbjct: 150 YLKK 153


>gnl|CDD|179025 PRK00439, leuD, 3-isopropylmalate dehydratase small subunit;
           Reviewed.
          Length = 163

 Score = 49.1 bits (118), Expect = 6e-06
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWK- 829
           ++ AG  +G GSSR+ A    +  GV +VIA+SF RI   N I +G +P         K 
Sbjct: 51  IIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIG-LPVLECDEAVDKI 109

Query: 830 ------NLNIKGDEIINIRKLKTIS--PRQESTLEI 857
                  ++++   I N+   +     P  E  LEI
Sbjct: 110 EDGDEVEVDLETGVITNLTTGEEYKFKPIPEFMLEI 145


>gnl|CDD|129223 TIGR00117, acnB, aconitate hydratase 2.  Aconitate hydratase
           (aconitase) is an enzyme of the TCA cycle. This model
           describes aconitase 2, AcnB, which has weak similarity
           to aconitase 1. It is found almost exclusively in the
           Proteobacteria.
          Length = 844

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 96/390 (24%), Positives = 141/390 (36%), Gaps = 89/390 (22%)

Query: 208 PDTCVGT--DSHTTMINALGILGWGVGGIEAEAAMLGC-PISMLLPEVVGFEVTGSLQEG 264
           PDT VGT  DSHT     LGI      G+ A AA  G  P+ M  PE V     G +Q G
Sbjct: 479 PDT-VGTGGDSHTRF--PLGISFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQPG 533

Query: 265 VTATDLVLTITQMLRKEGVVS-----KFVEFFGSGFESMVLADRAT-----IANMAPEYG 314
           +T  DLV  I     K+G+++     K   F G   E   L D        + + + E  
Sbjct: 534 ITLRDLVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIEGLPDLKVEQAFELTDASAERS 593

Query: 315 ATCGFFPVDRGT-IDYLR----------LSGRSNS-----RVDLVEAYTKVQGMWREDID 358
           A      +++   I+YL             G  +      R+  +E +     +   D D
Sbjct: 594 AAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADAD 653

Query: 359 YEKVAFTKKMKLDLGNVS-PSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYP 417
            E  A    +++DL  +  P +A P  P+    LSEV             +   +DE + 
Sbjct: 654 AEYAAV---IEIDLAEIKEPILAAPNDPDDVRPLSEV-------------QGDKIDEVF- 696

Query: 418 VKGCDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQ 477
                            I SC    N      AG +   A    L ++ WV    AP ++
Sbjct: 697 -----------------IGSCMT--NIGHFRAAGKILDAA--GQLPTRLWV----APPTR 731

Query: 478 VSYEYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNR 537
           +  + L + G      A G      GC+ C+GN   +    +        V +   +  R
Sbjct: 732 MDEQQLTEEGYYSIFGAAGARTEIPGCSLCMGNQARVADGAT--------VFS---TSTR 780

Query: 538 NFEGRISPDVEANYLLSPPLVVAYALAGNV 567
           NF  R+       YL S  L    AL G +
Sbjct: 781 NFPNRMGTGANV-YLGSAELAAVCALLGKI 809



 Score = 31.4 bits (71), Expect = 1.1
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 12/83 (14%)

Query: 46  VLLENLLR--FEDGCTVTKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDL 103
           VLL+ ++   + D  T+ + +I    KWL N   +E++    ++ V+          +DL
Sbjct: 615 VLLKWMIAEGYGDRRTL-ERRIQGMEKWLANPELLEADADAEYAAVIE---------IDL 664

Query: 104 AAMRDAIVVLGGDPQNINPLVPV 126
           A +++ I+    DP ++ PL  V
Sbjct: 665 AEIKEPILAAPNDPDDVRPLSEV 687


>gnl|CDD|173273 PRK14812, PRK14812, hypothetical protein; Provisional.
          Length = 119

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIK-GDEI- 838
           GSSR+ AA      G + VIA SF  IH +N +  G++P    + +  K   +K  D++ 
Sbjct: 3   GSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPREVREKLAQLKPTDQVT 62

Query: 839 INIRKLKTISPRQESTLEI 857
           +++ + K ISP +E T EI
Sbjct: 63  VDLEQQKIISPVEEFTFEI 81


>gnl|CDD|181718 PRK09238, PRK09238, bifunctional aconitate hydratase
           2/2-methylisocitrate dehydratase; Validated.
          Length = 835

 Score = 42.5 bits (101), Expect = 5e-04
 Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 11/78 (14%)

Query: 208 PDTCVGT--DSHTTMINALGILGWGVG-GIEAEAAMLG-CPISMLLPEVVGFEVTGSLQE 263
           PDT VGT  DSHT     +GI  +  G G+ A AA  G  P+ M  PE V     G +Q 
Sbjct: 478 PDT-VGTGGDSHTRF--PIGI-SFPAGSGLVAFAAATGVMPLDM--PESVLVRFKGEMQP 531

Query: 264 GVTATDLVLTI-TQMLRK 280
           G+T  DLV  I    +++
Sbjct: 532 GITLRDLVHAIPYYAIKQ 549


>gnl|CDD|131139 TIGR02084, leud, 3-isopropylmalate dehydratase, small subunit.
           Several pairs of archaeal proteins resemble the leuC and
           leuD pair in length and sequence but even more closely
           resemble the respective domains of homoaconitase, and
           their identity is uncertain. The members of the seed for
           this model are those sequences which are gene clustered
           with other genes involved in leucine biosynthesis and
           include some archaea.
          Length = 156

 Score = 38.2 bits (89), Expect = 0.008
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 771 VVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMG 816
           ++ AG  +G GSSR+ A    +  G+  VIA+SF RI   N I +G
Sbjct: 50  IIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIG 95


>gnl|CDD|179314 PRK01641, leuD, isopropylmalate isomerase small subunit;
           Provisional.
          Length = 200

 Score = 38.2 bits (90), Expect = 0.011
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 31/87 (35%)

Query: 754 LFIYDAAMRYKVDQVP----------------LVVFAGVEYGNGSSRD---WAAKGTRLL 794
           LF      RY  D  P                L+  AG  +G GSSR+   WA     L 
Sbjct: 42  LF---DDWRYLDDGQPNPDFVLNQPRYQGASILL--AGDNFGCGSSREHAPWA-----LA 91

Query: 795 --GVRSVIAESFERIHRSNLIGMGVIP 819
             G R+VIA SF  I  +N    G++P
Sbjct: 92  DYGFRAVIAPSFADIFYNNCFKNGLLP 118


>gnl|CDD|177714 PLN00094, PLN00094, aconitate hydratase 2; Provisional.
          Length = 938

 Score = 37.2 bits (86), Expect = 0.018
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 208 PDTCVGT--DSHTTMINALGILGWGVGGIEAEAAMLGC-PISMLLPEVVGFEVTGSLQEG 264
           PDT VGT  DSHT     +GI      G+ A  A  G  P+ M  PE V    TG++Q G
Sbjct: 552 PDT-VGTGGDSHTRF--PIGISFPAGSGLVAFGAATGVIPLDM--PESVLVRFTGTMQPG 606

Query: 265 VTATDLVLTITQMLRKEGVVS 285
           +T  DLV  I     ++G+++
Sbjct: 607 ITLRDLVHAIPYTAIQDGLLT 627


>gnl|CDD|177701 PLN00072, PLN00072, 3-isopropylmalate isomerase/dehydratase small
           subunit; Provisional.
          Length = 246

 Score = 36.4 bits (84), Expect = 0.033
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 755 FIYDAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIG 814
           F+    M+ K      ++  G  +G GSSR+ A       G ++V+AES+ RI   N + 
Sbjct: 120 FVEPGEMKTKYS----IIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVA 175

Query: 815 MGVI 818
            G +
Sbjct: 176 TGEV 179


>gnl|CDD|129275 TIGR00171, leuD, 3-isopropylmalate dehydratase, small subunit.
           Several pairs of archaeal proteins resemble the leuC and
           leuD pair in length and sequence but even more closely
           resemble the respective domains of homoaconitase, and
           their identity is uncertain. The candidate archaeal leuD
           proteins are not included in the seed alignment for this
           model and score below the trusted cutoff.
          Length = 188

 Score = 30.9 bits (70), Expect = 1.3
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 758 DAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGV 817
           D  +     Q   ++ A   +G GSSR+ A       G + +IA SF  I  +N    G+
Sbjct: 59  DFVLNQPQYQGASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGL 118

Query: 818 IP 819
           +P
Sbjct: 119 LP 120


>gnl|CDD|114880 pfam06187, DUF993, Protein of unknown function (DUF993).  This
           family consists of several hypothetical bacterial
           proteins of unknown function.
          Length = 382

 Score = 30.0 bits (68), Expect = 2.9
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 665 GARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEK 705
           G R+ C  G    TDH++P+ +  L    A+Y  Q    E 
Sbjct: 107 GGRVACGAG----TDHLAPSPAATLDDVIAAYEEQIEAVEA 143


>gnl|CDD|179650 PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase; Provisional.
          Length = 448

 Score = 29.5 bits (67), Expect = 4.2
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 645 RNPPYFETISKHIPEIVDICG---ARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRG 701
             PP  +T+++  P++   CG     +L    + I    ISP   + L + A       G
Sbjct: 39  EQPPGLDTLAREFPDVELRCGGFDCELLVQASEII----ISPG--LALDTPALRAAAAMG 92

Query: 702 VK 703
           ++
Sbjct: 93  IE 94


>gnl|CDD|177603 PHA03366, PHA03366, FGAM-synthase; Provisional.
          Length = 1304

 Score = 29.2 bits (66), Expect = 5.1
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 13/106 (12%)

Query: 490 EYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAG---VLSGNRNFEGRISPD 546
           E+   LG   V F  T+   +S    +         ++V      V S       R++PD
Sbjct: 759 EFCRELG---VNFTFTSA-SSSPRQDQPPQPGPLFNTIVFTASAPVPSSTP----RLTPD 810

Query: 547 VEA--NYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDI 590
           ++   + L+   +   Y LAG+V + +     G     SP YL+++
Sbjct: 811 LKKPGSALVHLSISPEYTLAGSVFEQIFGLKSGTLPDISPSYLKNL 856


>gnl|CDD|184463 PRK14030, PRK14030, glutamate dehydrogenase; Provisional.
          Length = 445

 Score = 29.0 bits (65), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 60 VTKEQIHAF-VKWLDNKGTVESEVSYR 85
          V  ++I  F V W+D+KG V+  + YR
Sbjct: 51 VEPDRIFTFRVPWVDDKGEVQVNLGYR 77


>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit
           alpha; Validated.
          Length = 764

 Score = 29.0 bits (65), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 405 YYKKSHTLDEKYPVKGCDFHLKHGD 429
           YYK++HT+D+++ +K C    +H D
Sbjct: 689 YYKEAHTIDQQWSIKACGVRQRHID 713


>gnl|CDD|130202 TIGR01132, pgm, phosphoglucomutase, alpha-D-glucose
           phosphate-specific.  This enzyme interconverts
           alpha-D-glucose-1-P and alpha-D-glucose-6-P.
          Length = 543

 Score = 28.7 bits (64), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 96  GVPAVVDLAAMRDAIVVLGGDP 117
           G+  +VD+AA++ A + LG DP
Sbjct: 213 GLADIVDMAAIQKAGLRLGVDP 234


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 14,907,107
Number of extensions: 1004707
Number of successful extensions: 1893
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1816
Number of HSP's successfully gapped: 52
Length of query: 896
Length of database: 5,994,473
Length adjustment: 102
Effective length of query: 794
Effective length of database: 3,790,457
Effective search space: 3009622858
Effective search space used: 3009622858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.0 bits)