BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780451|ref|YP_003064864.1| aconitate hydratase
[Candidatus Liberibacter asiaticus str. psy62]
(896 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Length = 896
Score = 1855 bits (4805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 896/896 (100%), Positives = 896/896 (100%)
Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60
MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV
Sbjct: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60
Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120
TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI
Sbjct: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120
Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180
NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT
Sbjct: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180
Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240
GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM
Sbjct: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240
Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300
LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL
Sbjct: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300
Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360
ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE
Sbjct: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360
Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420
KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG
Sbjct: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420
Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480
CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY
Sbjct: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480
Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540
EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE
Sbjct: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540
Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600
GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF
Sbjct: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600
Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660
VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI
Sbjct: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660
Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720
VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM
Sbjct: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720
Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780
MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN
Sbjct: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780
Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840
GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN
Sbjct: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840
Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896
IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS
Sbjct: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 28.9 bits (63), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 65 IHAFVKWLDN-KGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123
+H K +D G S SY +S +F P D + R IV+LGG P I
Sbjct: 576 LHPVFKCVDTCAGEFSSPTSYMYS-TYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQG 634
Query: 124 VPVDLVIDHS 133
+ D H+
Sbjct: 635 IEFDYCCCHA 644
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 27.3 bits (59), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 743 GYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEY 778
Y IH +K+E R+KV+ PL+ VEY
Sbjct: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
>gi|254780708|ref|YP_003065121.1| intracellular septation protein A [Candidatus Liberibacter
asiaticus str. psy62]
Length = 204
Score = 26.2 bits (56), Expect = 2.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 170 FKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201
F+ FRV+P +G+C L + +VW ++E+
Sbjct: 69 FREFRVIPVVSGVC---VLVFGSLTVWLRDES 97
>gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 86
Score = 26.2 bits (56), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 237 EAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLT 273
+A C +S ++P+ V FE+ +L V+ D T
Sbjct: 33 KALKPSCNLSTIIPQTVSFELINNLNYSVSTNDKPFT 69
>gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 216
Score = 25.0 bits (53), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 758 DAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794
DAAM KVD+ ++ + N SS W G LL
Sbjct: 86 DAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLL 122
>gi|254781020|ref|YP_003065433.1| isopentenyl pyrophosphate isomerase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 337
Score = 24.3 bits (51), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFV 288
S++L +G + L+ + ++D V+ + LRKE +VS F+
Sbjct: 276 SIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFL 318
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 598,851
Number of Sequences: 1233
Number of extensions: 26942
Number of successful extensions: 71
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 9
length of query: 896
length of database: 328,796
effective HSP length: 82
effective length of query: 814
effective length of database: 227,690
effective search space: 185339660
effective search space used: 185339660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 43 (21.2 bits)