BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] (896 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 896 Score = 1855 bits (4805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 896/896 (100%), Positives = 896/896 (100%) Query: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV Sbjct: 1 MSRSLNSFNCRSILSVGGIDYVYYSLPKAEANGLQGISRLPCSMKVLLENLLRFEDGCTV 60 Query: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI Sbjct: 61 TKEQIHAFVKWLDNKGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNI 120 Query: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT Sbjct: 121 NPLVPVDLVIDHSLIVDYSGNKDAVTRNKDLEYQRNEERYRFLKWGQKSFKNFRVVPPGT 180 Query: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM Sbjct: 181 GICHQINLEYLGQSVWTKNENGENIAYPDTCVGTDSHTTMINALGILGWGVGGIEAEAAM 240 Query: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL Sbjct: 241 LGCPISMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFVEFFGSGFESMVL 300 Query: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE Sbjct: 301 ADRATIANMAPEYGATCGFFPVDRGTIDYLRLSGRSNSRVDLVEAYTKVQGMWREDIDYE 360 Query: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG Sbjct: 361 KVAFTKKMKLDLGNVSPSVAGPRRPESRLSLSEVPSSFVTEMNEYYKKSHTLDEKYPVKG 420 Query: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY Sbjct: 421 CDFHLKHGDVAIASITSCTNTFNPSVMIGAGLLARNAVRAGLKSKPWVKTSCAPGSQVSY 480 Query: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE Sbjct: 481 EYLVQAGLVEYLEALGFSLVGFGCTTCIGNSGALKKEISEVIHQKSLVVAGVLSGNRNFE 540 Query: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF Sbjct: 541 GRISPDVEANYLLSPPLVVAYALAGNVRKNLIKDPIGEDQQGSPVYLRDIWPKDSEIQSF 600 Query: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI Sbjct: 601 VNKYVTCDLYKKKYSDVFKGDSSWWNIEVPESETYMWDEKSTYVRNPPYFETISKHIPEI 660 Query: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM Sbjct: 661 VDICGARILCLLGDKITTDHISPAGSIPLQSAAASYLRQRGVKEKDFNQFGTRRGNHEVM 720 Query: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN Sbjct: 721 MRGTFSNIRICNYMLGEEGKKGGYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEYGN 780 Query: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN Sbjct: 781 GSSRDWAAKGTRLLGVRSVIAESFERIHRSNLIGMGVIPFAFGKGISWKNLNIKGDEIIN 840 Query: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS Sbjct: 841 IRKLKTISPRQESTLEIHYSDGTFKCVPIICCIDTLDEINHLKNGGILQAVLRQLS 896 >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 28.9 bits (63), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 65 IHAFVKWLDN-KGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123 +H K +D G S SY +S +F P D + R IV+LGG P I Sbjct: 576 LHPVFKCVDTCAGEFSSPTSYMYS-TYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQG 634 Query: 124 VPVDLVIDHS 133 + D H+ Sbjct: 635 IEFDYCCCHA 644 >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 27.3 bits (59), Expect = 1.3, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 18/36 (50%) Query: 743 GYTIHYPSKEELFIYDAAMRYKVDQVPLVVFAGVEY 778 Y IH +K+E R+KV+ PL+ VEY Sbjct: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 >gi|254780708|ref|YP_003065121.1| intracellular septation protein A [Candidatus Liberibacter asiaticus str. psy62] Length = 204 Score = 26.2 bits (56), Expect = 2.2, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Query: 170 FKNFRVVPPGTGICHQINLEYLGQSVWTKNEN 201 F+ FRV+P +G+C L + +VW ++E+ Sbjct: 69 FREFRVIPVVSGVC---VLVFGSLTVWLRDES 97 >gi|254780887|ref|YP_003065300.1| hypothetical protein CLIBASIA_03920 [Candidatus Liberibacter asiaticus str. psy62] Length = 86 Score = 26.2 bits (56), Expect = 2.4, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 19/37 (51%) Query: 237 EAAMLGCPISMLLPEVVGFEVTGSLQEGVTATDLVLT 273 +A C +S ++P+ V FE+ +L V+ D T Sbjct: 33 KALKPSCNLSTIIPQTVSFELINNLNYSVSTNDKPFT 69 >gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62] Length = 216 Score = 25.0 bits (53), Expect = 5.8, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 758 DAAMRYKVDQVPLVVFAGVEYGNGSSRDWAAKGTRLL 794 DAAM KVD+ ++ + N SS W G LL Sbjct: 86 DAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLL 122 >gi|254781020|ref|YP_003065433.1| isopentenyl pyrophosphate isomerase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 24.3 bits (51), Expect = 8.7, Method: Compositional matrix adjust. Identities = 13/43 (30%), Positives = 25/43 (58%) Query: 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFV 288 S++L +G + L+ + ++D V+ + LRKE +VS F+ Sbjct: 276 SIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFL 318 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.137 0.410 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 598,851 Number of Sequences: 1233 Number of extensions: 26942 Number of successful extensions: 71 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 65 Number of HSP's gapped (non-prelim): 9 length of query: 896 length of database: 328,796 effective HSP length: 82 effective length of query: 814 effective length of database: 227,690 effective search space: 185339660 effective search space used: 185339660 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 43 (21.2 bits)