HHsearch alignment for GI: 254780452 and conserved domain: COG4760

>COG4760 Predicted membrane protein [Function unknown].
Probab=97.85  E-value=0.0024  Score=39.81  Aligned_cols=192  Identities=23%  Similarity=0.319  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999999999999854556665566787644579999999983284326777788999998776540145
Q gi|254780452|r   28 YMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLS  107 (259)
Q Consensus        28 Fi~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~~~~~~~~s  107 (259)
T Consensus        54 vvtkTG~tLav-~~vtavvs~~~~lv~----p~-------------------La~~ltlvGaiGGlilvLvatFgkK~~s  109 (276)
T COG4760          54 VVTKTGATLAV-LLVTAVVSFFLVLVN----PA-------------------LAMPLTLVGAIGGLILVLVATFGKKQWS  109 (276)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHCC----HH-------------------HCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             01113089999-999999999999617----77-------------------5041768988635999999985454588


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHH
Q ss_conf             420123899999998776789999------742---17889999999999999999998655-----5555420357899
Q gi|254780452|r  108 AYAAKMMFLLYSALIGLSLSSFFL------VYT---SKSIVQTFFITAASFGSLSLYGYTTK-----RDLGPIGSFMIMG  173 (259)
Q Consensus       108 ~~~~~~l~~~f~~~~G~tls~i~~------~y~---~~~I~~A~~~Ta~if~~ls~~~~~tk-----~D~s~~g~~L~~~  173 (259)
T Consensus       110 pai----~l~YAv~EGlFlGaiS~lla~ftV~~anaGgligqAvLgT~Gvf~gML~-vYktGaIkvTpkF~r~v~a~~~G  184 (276)
T COG4760         110 PAI----VLSYAVLEGLFLGAISFLLANFTVYEANAGGLIGQAVLGTFGVFFGMLV-VYKTGAIKVTPKFTRMVVAATFG  184 (276)
T ss_pred             HHH----HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEHHHHHHHHHHHHHHHH-HHHCCCEEECCHHHHHHHHHHHH
T ss_conf             289----9899999878887799875154588423563438999998999999999-97447666550167799999888


Q ss_pred             HHHHHHHHHHH-HHCC--CH------HHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999997-4136--60------7999999--999999999999999--9999972156765435047999999999
Q gi|254780452|r  174 AFGLFLLSLVN-LFMR--SS------AIDLTMS--AMGLVIFSALTAYDT--QKIKEAYSDRYDVAYAERQSVIGALMLY  240 (259)
Q Consensus       174 l~~lii~~i~~-~F~~--s~------~~~~~~s--~~g~~iFs~~i~yDt--Q~I~~~~~~~~~~~~~~~~~I~~Al~LY  240 (259)
T Consensus       185 vl~L~Lgn~vla~F~Gg~~pllr~gG~~~IiFSLfcigiAAf~fllDFDaad~~vr~----GA----P~kmaWgvAlGL~  256 (276)
T COG4760         185 VLVLMLGNFVLAMFVGGGIPLLRSGGPFGIIFSLFCIGIAAFSFLLDFDAADQMVRA----GA----PEKMAWGVALGLT  256 (276)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHH
T ss_conf             999999999999981588620247983575478999999999888511478999874----88----0563888887499


Q ss_pred             HHHHHHHHHHHHHHCC
Q ss_conf             9999999999999377
Q gi|254780452|r  241 MDFIQIFVHLLRFLGS  256 (259)
Q Consensus       241 lDiiNlFl~iL~ilG~  256 (259)
T Consensus       257 VTLVWLY~EiLRLLSy  272 (276)
T COG4760         257 VTLVWLYLEILRLLSY  272 (276)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999998