HHsearch alignment for GI: 254780452 and conserved domain: COG4760
>COG4760 Predicted membrane protein [Function unknown].
Probab=97.85 E-value=0.0024 Score=39.81 Aligned_cols=192 Identities=23% Similarity=0.319 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999999854556665566787644579999999983284326777788999998776540145
Q gi|254780452|r 28 YMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLS 107 (259)
Q Consensus 28 Fi~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~~~~~~~~s 107 (259)
T Consensus 54 vvtkTG~tLav-~~vtavvs~~~~lv~----p~-------------------La~~ltlvGaiGGlilvLvatFgkK~~s 109 (276)
T COG4760 54 VVTKTGATLAV-LLVTAVVSFFLVLVN----PA-------------------LAMPLTLVGAIGGLILVLVATFGKKQWS 109 (276)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHCC----HH-------------------HCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 01113089999-999999999999617----77-------------------5041768988635999999985454588
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHH
Q ss_conf 420123899999998776789999------742---17889999999999999999998655-----5555420357899
Q gi|254780452|r 108 AYAAKMMFLLYSALIGLSLSSFFL------VYT---SKSIVQTFFITAASFGSLSLYGYTTK-----RDLGPIGSFMIMG 173 (259)
Q Consensus 108 ~~~~~~l~~~f~~~~G~tls~i~~------~y~---~~~I~~A~~~Ta~if~~ls~~~~~tk-----~D~s~~g~~L~~~ 173 (259)
T Consensus 110 pai----~l~YAv~EGlFlGaiS~lla~ftV~~anaGgligqAvLgT~Gvf~gML~-vYktGaIkvTpkF~r~v~a~~~G 184 (276)
T COG4760 110 PAI----VLSYAVLEGLFLGAISFLLANFTVYEANAGGLIGQAVLGTFGVFFGMLV-VYKTGAIKVTPKFTRMVVAATFG 184 (276)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEHHHHHHHHHHHHHHHH-HHHCCCEEECCHHHHHHHHHHHH
T ss_conf 289----9899999878887799875154588423563438999998999999999-97447666550167799999888
Q ss_pred HHHHHHHHHHH-HHCC--CH------HHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999997-4136--60------7999999--999999999999999--9999972156765435047999999999
Q gi|254780452|r 174 AFGLFLLSLVN-LFMR--SS------AIDLTMS--AMGLVIFSALTAYDT--QKIKEAYSDRYDVAYAERQSVIGALMLY 240 (259)
Q Consensus 174 l~~lii~~i~~-~F~~--s~------~~~~~~s--~~g~~iFs~~i~yDt--Q~I~~~~~~~~~~~~~~~~~I~~Al~LY 240 (259)
T Consensus 185 vl~L~Lgn~vla~F~Gg~~pllr~gG~~~IiFSLfcigiAAf~fllDFDaad~~vr~----GA----P~kmaWgvAlGL~ 256 (276)
T COG4760 185 VLVLMLGNFVLAMFVGGGIPLLRSGGPFGIIFSLFCIGIAAFSFLLDFDAADQMVRA----GA----PEKMAWGVALGLT 256 (276)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHH
T ss_conf 999999999999981588620247983575478999999999888511478999874----88----0563888887499
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 9999999999999377
Q gi|254780452|r 241 MDFIQIFVHLLRFLGS 256 (259)
Q Consensus 241 lDiiNlFl~iL~ilG~ 256 (259)
T Consensus 257 VTLVWLY~EiLRLLSy 272 (276)
T COG4760 257 VTLVWLYLEILRLLSY 272 (276)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999998