Query gi|254780452|ref|YP_003064865.1| hypothetical protein CLIBASIA_01685 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 259
No_of_seqs 135 out of 1134
Neff 7.3
Searched_HMMs 39220
Date Sun May 29 19:56:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780452.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0670 Integral membrane prot 100.0 0 0 316.7 27.3 225 1-258 1-233 (233)
2 cd06181 BI-1-like BAX inhibito 100.0 0 0 316.6 27.1 210 25-257 2-212 (212)
3 pfam01027 UPF0005 Uncharacteri 100.0 1.3E-43 0 299.9 24.3 199 27-256 1-203 (203)
4 PRK10447 hypothetical protein; 100.0 4.7E-39 1.2E-43 270.5 25.1 198 24-259 16-218 (219)
5 KOG2322 consensus 100.0 9.4E-34 2.4E-38 236.2 12.1 199 19-242 37-237 (237)
6 KOG1629 consensus 100.0 2.3E-26 5.9E-31 188.5 17.9 204 16-255 14-221 (235)
7 KOG1630 consensus 99.9 6.6E-25 1.7E-29 179.1 16.2 216 21-258 107-335 (336)
8 pfam06539 consensus 98.9 3.5E-06 8.9E-11 58.1 20.7 198 29-256 10-224 (228)
9 COG4760 Predicted membrane pro 97.8 0.0024 6.1E-08 39.8 16.5 192 28-256 54-272 (276)
10 PHA00027 lys lysis protein 48.5 16 0.0004 15.1 3.2 28 222-249 12-40 (58)
11 KOG3488 consensus 45.7 17 0.00044 14.8 7.1 65 191-258 7-78 (81)
12 TIGR02093 P_ylase glycogen/sta 41.0 8 0.0002 17.0 0.1 13 114-126 61-73 (822)
13 TIGR00894 2A0114euk Na(+)-depe 37.9 23 0.00058 14.1 4.4 174 31-215 287-484 (514)
14 TIGR00930 2a30 K-Cl cotranspor 33.5 27 0.00068 13.6 9.6 97 105-210 544-645 (1171)
15 KOG2899 consensus 32.8 28 0.0007 13.6 2.0 16 22-37 185-200 (288)
16 COG3887 Predicted signaling pr 31.0 29 0.00075 13.4 5.9 46 169-214 12-57 (655)
17 TIGR00445 mraY phospho-N-acety 26.7 35 0.00089 12.9 3.3 49 140-188 169-226 (336)
18 pfam05356 Phage_Coat_B Phage C 25.7 36 0.00093 12.8 2.5 26 159-184 52-77 (83)
19 TIGR01607 PST-A Plasmodium sub 23.0 41 0.001 12.5 1.7 15 245-259 160-174 (379)
20 COG5080 YIP1 Rab GTPase intera 22.8 41 0.0011 12.4 7.8 72 136-209 120-192 (227)
21 KOG2678 consensus 22.7 42 0.0011 12.4 3.0 28 160-187 208-235 (244)
22 KOG3103 consensus 20.4 46 0.0012 12.1 7.1 53 138-191 145-197 (249)
No 1
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=100.00 E-value=0 Score=316.70 Aligned_cols=225 Identities=47% Similarity=0.762 Sum_probs=198.3
Q ss_pred CCH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 940-1454210232000245566999999999999999999999999999985455666556678764457999999998
Q gi|254780452|r 1 MSD-IRNYQRVVNSGSGFGSTIDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALM 79 (259)
Q Consensus 1 m~~-~~n~~~~~~~~~~~~~~~d~~lr~Fi~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
|+| +|||+++.+... |++.|+|++|||.+++.+|++|+++|+.....+..... .
T Consensus 1 m~~~~~~~~~~~~~~~------~~~~~~f~~~vY~~~~~~L~~t~~~a~~~~~~~~~~~~------------------~- 55 (233)
T COG0670 1 MNMFDRSYSRIQAFKS------DLGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLGL------------------L- 55 (233)
T ss_pred CCCCHHHHCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------H-
T ss_conf 9851142302100014------17899999999999999999999999999998887410------------------1-
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 3284326777788999998776540145420123899999998776789999742178----899999999999999999
Q gi|254780452|r 80 YTSPLRWIFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKS----IVQTFFITAASFGSLSLY 155 (259)
Q Consensus 80 ~~~~~~~v~~~~~l~l~~~~~~~~~~~s~~~~~~l~~~f~~~~G~tls~i~~~y~~~~----I~~A~~~Ta~if~~ls~~ 155 (259)
..+|..|+..++++..++..+...+| |.+.+..+++.|+.++|++++|+..+|.+.. |.+|+++|+++|++++++
T Consensus 56 ~~~~~~~vl~~a~l~~~~~~~~~~~~-s~~~~~~~~~~~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~ 134 (233)
T COG0670 56 SLSPPGFVLIIAGLAGVFFLSRKINK-SSPTALILFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLY 134 (233)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 02459999999999999999998514-76249999999999999999999999984054408999999999999999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 98655555542035789999999999997413660799999999999999999999999999721567654350479999
Q gi|254780452|r 156 GYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIG 235 (259)
Q Consensus 156 ~~~tk~D~s~~g~~L~~~l~~lii~~i~~~F~~s~~~~~~~s~~g~~iFs~~i~yDtQ~I~~~~~~~~~~~~~~~~~I~~ 235 (259)
+++||||++++|++++++++++++++++|+|++|+.+++++|++|+++|+|+++||||+||+. +..+|+++.+
T Consensus 135 g~~tk~Dls~l~~~l~~aligLiiasvvn~Fl~s~~l~~~IS~lgvlifsgli~yDtq~I~~~-------~~~~~~~i~~ 207 (233)
T COG0670 135 GYTTKRDLSSLGSFLFMALIGLIIASLVNIFLGSSALHLAISVLGVLIFSGLIAYDTQNIKRM-------EGGERLAIMG 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHH
T ss_conf 999852387799999999999999999999975838999999999999999999999999987-------0340259999
Q ss_pred HHHHHHHHHHHHHHHHHHHC---CCC
Q ss_conf 99999999999999999937---789
Q gi|254780452|r 236 ALMLYMDFIQIFVHLLRFLG---SRR 258 (259)
Q Consensus 236 Al~LYlDiiNlFl~iL~ilG---~rr 258 (259)
|++||+|+||+|+++|||+| +||
T Consensus 208 AlsLYldfiNlF~~LL~i~g~~~~r~ 233 (233)
T COG0670 208 ALSLYLDFINLFLSLLRILGILSNRR 233 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999972401689
No 2
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=100.00 E-value=0 Score=316.61 Aligned_cols=210 Identities=40% Similarity=0.704 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HH
Q ss_conf 99999999999999999999999999854556665566787644579999999983284326777788999998776-54
Q gi|254780452|r 25 LRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLNV-RL 103 (259)
Q Consensus 25 lr~Fi~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~~~-~~ 103 (259)
.|+|+||||++|+.|+++|+++++.....+.... .....+..|+..+.+++....+.. +.
T Consensus 2 r~~fi~kVY~~l~~~l~~t~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~ 62 (212)
T cd06181 2 RRGFLRKVYGLLALQLLVTALVAYLGMFSPPLRN-------------------VLSNTPLGWLLLLAFLGLVILLFCCRI 62 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5789999999999999999999999998799999-------------------997170999999999999999999898
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 01454201238999999987767899997421788999999999999999999865555554203578999999999999
Q gi|254780452|r 104 HSLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLV 183 (259)
Q Consensus 104 ~~~s~~~~~~l~~~f~~~~G~tls~i~~~y~~~~I~~A~~~Ta~if~~ls~~~~~tk~D~s~~g~~L~~~l~~lii~~i~ 183 (259)
+++++|.+..++.+|++++|+++++++..|++..|.+|++.|+++|+++++++++||+|++++|++++++++++++.+++
T Consensus 63 ~~~~~p~n~~ll~~ft~~~g~~l~~~~~~y~~~~i~~A~~~Ta~if~~ls~~~~~tk~d~s~~g~~L~~~l~~lii~~i~ 142 (212)
T cd06181 63 KRRSSPANLILLFLFTALMGVTLGPILSVYTAASVLQAFGITAAVFGGLSLYALTTKRDFSFLGGFLFMGLIVLIVASLV 142 (212)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 72264799999999999999999999999826999999999999999999999992278887799999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 74136607999999999999999999999999997215676543504799999999999999999999993778
Q gi|254780452|r 184 NLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLGSR 257 (259)
Q Consensus 184 ~~F~~s~~~~~~~s~~g~~iFs~~i~yDtQ~I~~~~~~~~~~~~~~~~~I~~Al~LYlDiiNlFl~iL~ilG~r 257 (259)
|+|++++.++.+++++|+++|++|++||||+|++.++++ ..+||||.||++||+|++|+|+++|||+|+|
T Consensus 143 ~~f~~~~~~~~~~~~~g~~if~~~i~yDtq~i~~~~~~~----~~~~d~I~~Al~LYlD~inlFl~iL~ilg~~ 212 (212)
T cd06181 143 NIFLQSPALQLAISALGVLLFSGYILYDTQLIIGGYRLY----LSPDDYILAALSLYLDIINLFLSLLRILGSR 212 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999830999999999999999999999999999863336----9951699999999999999999999976899
No 3
>pfam01027 UPF0005 Uncharacterized protein family UPF0005. The Pfam entry finds members not in the Prosite definition.
Probab=100.00 E-value=1.3e-43 Score=299.85 Aligned_cols=199 Identities=31% Similarity=0.513 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHCC
Q ss_conf 9999999999999999999999998545566655667876445799999999832843267777889999987-765401
Q gi|254780452|r 27 AYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFL-NVRLHS 105 (259)
Q Consensus 27 ~Fi~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~-~~~~~~ 105 (259)
+|+||||++|++|+++|+++|+..... ...... ...|+..+..++..+.. ....++
T Consensus 1 ~flrKVY~~l~~~ll~Ta~~a~~~~~~--~~~~~~---------------------~~~~~~~i~~~~~~~~~~~~~~~~ 57 (203)
T pfam01027 1 KVLRKTYALLALTLLLTAAGAYVSMAL--LLPFMA---------------------GGPLLSLIGFLGLLFFLLAAPRNS 57 (203)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 905899999999999999999999898--899998---------------------708999999999999999999877
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHH
Q ss_conf 4542012389999999877678999974--2178899999999999999999986555-555420357899999999999
Q gi|254780452|r 106 LSAYAAKMMFLLYSALIGLSLSSFFLVY--TSKSIVQTFFITAASFGSLSLYGYTTKR-DLGPIGSFMIMGAFGLFLLSL 182 (259)
Q Consensus 106 ~s~~~~~~l~~~f~~~~G~tls~i~~~y--~~~~I~~A~~~Ta~if~~ls~~~~~tk~-D~s~~g~~L~~~l~~lii~~i 182 (259)
++++.+..++..|++++|.+++|++..| +|+.|.+|++.|+++|.++|++|.+||| |++++|++|+++++++++.++
T Consensus 58 ~~~~~~~~ll~~ft~~~G~~l~~~~~~~~~~~~iI~~A~~~T~~if~~ls~~a~~tk~~d~s~lg~~L~~~l~~lii~~i 137 (203)
T pfam01027 58 KNSPKGLLLLFAFTFFMGLTLGPLLNFYLANPSIVMTALGGTAAIFGGLSAYALTAKKRDFSFLGGFLFAGLIVLIVASL 137 (203)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 43458999999999999999999999996571899999999999999999999996434375578999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 97413660799999999999999999999999999721567654350479999999999999999999999377
Q gi|254780452|r 183 VNLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLGS 256 (259)
Q Consensus 183 ~~~F~~s~~~~~~~s~~g~~iFs~~i~yDtQ~I~~~~~~~~~~~~~~~~~I~~Al~LYlDiiNlFl~iL~ilG~ 256 (259)
+|+|++|+..+.+++++|+++|++|++||||+|++++ .++|||.+|++||+||||+|+++|||+|.
T Consensus 138 ~~~f~~s~~~~~~~s~~g~~iF~~~i~yDtq~i~~~~--------~~~d~i~~Al~LYlD~inlF~~iL~ilG~ 203 (203)
T pfam01027 138 ANIFFQSPALQLAISYGGLLLFSGFILYDTQNIIKRG--------GETDYIMAAVSLYLDFINLFVRLLQILGI 203 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999841999999999999999999999999999866--------96069999999999999999999998394
No 4
>PRK10447 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-39 Score=270.50 Aligned_cols=198 Identities=21% Similarity=0.344 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999985455666556678764457999999998328432677-77889999987765
Q gi|254780452|r 24 GLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIF-IFAPLGVFIFLNVR 102 (259)
Q Consensus 24 ~lr~Fi~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~l~l~~~~~~~ 102 (259)
.-++.+||+|.+++..++.+++.|+....... ++..++. ..+-.++.+....
T Consensus 16 ~tNkvLRNTY~LLaltl~fsa~~A~~sm~~~~--------------------------~~~~~~~~l~~~~gllf~~~k- 68 (219)
T PRK10447 16 STHKVLRNTYFLLSLTLAFSAITATASTVLML--------------------------PSPGLILTLVGMYGLMFLTYK- 68 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------------CHHHHHHHHHHHHHHHHHHHH-
T ss_conf 99799999999999999999999999998747--------------------------655899999999999999999-
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 40145420123899999998776789999742----17889999999999999999998655555542035789999999
Q gi|254780452|r 103 LHSLSAYAAKMMFLLYSALIGLSLSSFFLVYT----SKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLF 178 (259)
Q Consensus 103 ~~~~s~~~~~~l~~~f~~~~G~tls~i~~~y~----~~~I~~A~~~Ta~if~~ls~~~~~tk~D~s~~g~~L~~~l~~li 178 (259)
+++........++|+..+|++++|+..+|- ++.|.+|++.|+++|.++|.|+.+||||||++|++|++|+++++
T Consensus 69 --~~ns~~Gi~~~fafTg~mG~~lgPil~~yl~~~~g~iV~~A~~~Ta~iF~~lS~ya~~TKkDfS~mG~fL~~glivli 146 (219)
T PRK10447 69 --TANKPTGIISAFAFTGFLGYILGPILNTYLSAGMGDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVL 146 (219)
T ss_pred --HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf --852616699999999999998999999997128816999999889999999999998500326555679999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999741366079999999999999999999999999972156765435047999999999999999999999937789
Q gi|254780452|r 179 LLSLVNLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLGSRR 258 (259)
Q Consensus 179 i~~i~~~F~~s~~~~~~~s~~g~~iFs~~i~yDtQ~I~~~~~~~~~~~~~~~~~I~~Al~LYlDiiNlFl~iL~ilG~rr 258 (259)
+++++|+|+++|.+++.+|.+++++|||+++||||+|++. +|++||.++++||+||+|+|+++|||+|-.+
T Consensus 147 va~i~niFl~~p~l~laiS~~~vllfsg~IlydT~~Ii~g---------ge~nyI~Atv~LYldi~NLF~sLL~llGi~~ 217 (219)
T PRK10447 147 IGMVANIFLQLPALHLAISAVFILISSGAILFETSNIIHG---------GETNYIRATVSLYVSLYNIFVSLLSILGFAS 217 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999985589999999999999999999999999826---------8226999999999999999999999957536
Q ss_pred C
Q ss_conf 8
Q gi|254780452|r 259 D 259 (259)
Q Consensus 259 ~ 259 (259)
|
T Consensus 218 ~ 218 (219)
T PRK10447 218 R 218 (219)
T ss_pred C
T ss_conf 9
No 5
>KOG2322 consensus
Probab=100.00 E-value=9.4e-34 Score=236.25 Aligned_cols=199 Identities=18% Similarity=0.296 Sum_probs=161.3
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 55669999-99999999999999999999999985455666556678764457999999998328432677778899999
Q gi|254780452|r 19 STIDQGLR-AYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFI 97 (259)
Q Consensus 19 ~~~d~~lr-~Fi~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l~~ 97 (259)
+.-|+.+| +|+||||++++.||++|.+++..+...+.......++.+..... +++++.. .+.+
T Consensus 37 ~~~~~~iR~~FiRKVYsIl~~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~vf~vt-~l~l 100 (237)
T KOG2322 37 AFCDQSIRWGFIRKVYSILSIQLLITLAVVAIFTVHEPVQDFVRRNPALYWAL---------------IVVFIVT-YLSL 100 (237)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCHHHHHH---------------HHHHHHH-HHHH
T ss_conf 31028899999999999999999999986147797347999998491799999---------------9999999-9999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 87765401454201238999999987767899997421788999999999999999999865555554203578999999
Q gi|254780452|r 98 FLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGL 177 (259)
Q Consensus 98 ~~~~~~~~~s~~~~~~l~~~f~~~~G~tls~i~~~y~~~~I~~A~~~Ta~if~~ls~~~~~tk~D~s~~g~~L~~~l~~l 177 (259)
.++.+. +++.|.+.+++..|+..++.+.+..+..|++..|++|+.+|++++.++++|+.+||+||+..|++++..++.+
T Consensus 101 ~c~~~~-r~k~P~N~ilL~iFT~a~s~~~g~~~a~~~~~~VL~Al~IT~~V~~slt~~t~qtK~DFt~~~~~l~~~l~vl 179 (237)
T KOG2322 101 ACCEGL-RRKSPVNLILLGIFTLAEAFMTGLVTAFYDAKVVLLALIITTVVVLSLTLFTLQTKYDFTSLGGFLFALLIVL 179 (237)
T ss_pred HCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 826751-2248577728999899999999999999720799999999874312589999752130543215999999999
Q ss_pred HHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999-9974136607999999999999999999999999997215676543504799999999999
Q gi|254780452|r 178 FLLS-LVNLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMD 242 (259)
Q Consensus 178 ii~~-i~~~F~~s~~~~~~~s~~g~~iFs~~i~yDtQ~I~~~~~~~~~~~~~~~~~I~~Al~LYlD 242 (259)
+..+ |..+|..++.++++|+++|+++|++|++||||++++ +.+++|||+||++||+|
T Consensus 180 ~~~g~I~~~f~~~~~~~~vya~lgAllf~~yl~~Dtqllm~--------~~SPEEYI~aA~~lYlD 237 (237)
T KOG2322 180 LLFGLIFLFFPYGPILVMVYAALGALLFCGYLVYDTQLLMG--------RISPEEYIFAALNLYLD 237 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHCC
T ss_conf 99988999873179999999999999986787720598866--------57879999998996059
No 6
>KOG1629 consensus
Probab=99.95 E-value=2.3e-26 Score=188.47 Aligned_cols=204 Identities=25% Similarity=0.326 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 02455669999999999999999999999999999854556665566787644579999999983284326777788999
Q gi|254780452|r 16 GFGSTIDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGV 95 (259)
Q Consensus 16 ~~~~~~d~~lr~Fi~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l 95 (259)
...+..+|.+|++++|||..++..+..|++.||.-.. ++.+.....++ .+++
T Consensus 14 ~n~~~~sP~vq~HLkkvY~tl~~~~~asA~GAylhM~-------------~nigG~lsalg---------------~l~~ 65 (235)
T KOG1629 14 LNFSHISPAVQNHLKKVYLTLALALFASAAGAYLHMV-------------WNIGGLLSALG---------------SLGL 65 (235)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHCCCHHHHHH---------------HHHH
T ss_conf 4644189779999999999999999999865378753-------------31020589999---------------9999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCHHH
Q ss_conf 998776540145420123899999998776789999---7421788999999999999999999865-555554203578
Q gi|254780452|r 96 FIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFL---VYTSKSIVQTFFITAASFGSLSLYGYTT-KRDLGPIGSFMI 171 (259)
Q Consensus 96 ~~~~~~~~~~~s~~~~~~l~~~f~~~~G~tls~i~~---~y~~~~I~~A~~~Ta~if~~ls~~~~~t-k~D~s~~g~~L~ 171 (259)
++++.+... ++.....++.+|.++.|.+++|... -.||.++.+||..|+++|.+.|+-+... +|.+.++|+.|.
T Consensus 66 miwl~~~py--~hk~rl~lL~~fa~l~GasvGP~i~~~ididpsIliTAf~GTav~F~cfSasAmlArrreYLylGg~L~ 143 (235)
T KOG1629 66 MIWLMFTPY--EHKTRLGLLFLFAFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSASAMLARRREYLYLGGLLS 143 (235)
T ss_pred HHHHHCCCC--CCCHHHHHHHHHHHHCCCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998707787--640447999999998178630325520036808999999745899999989999986524644357999
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999974136607999999999999999999999999997215676543504799999999999999999999
Q gi|254780452|r 172 MGAFGLFLLSLVNLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLL 251 (259)
Q Consensus 172 ~~l~~lii~~i~~~F~~s~~~~~~~s~~g~~iFs~~i~yDtQ~I~~~~~~~~~~~~~~~~~I~~Al~LYlDiiNlFl~iL 251 (259)
.++-.+...++.|.|++|.+....-.|.|+++|.||+++|||.|.|+.+. ++.||+.++++||.||+.+|.+||
T Consensus 144 s~~s~l~wl~l~n~~fgS~~v~~~qLY~Gllvfvg~ivvdTQ~IiEKah~------GdmDyv~Hsl~lf~dfvsvF~riL 217 (235)
T KOG1629 144 SGLSLLLWLSLANSFFGSIWVFKFQLYVGLLVFVGFIVVDTQEIIEKAHH------GDMDYVQHSLDLFTDFVSVFRRIL 217 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999898864789989999997887620478618999999854------776899999999999999999999
Q ss_pred HHHC
Q ss_conf 9937
Q gi|254780452|r 252 RFLG 255 (259)
Q Consensus 252 ~ilG 255 (259)
.|+-
T Consensus 218 iIl~ 221 (235)
T KOG1629 218 IILA 221 (235)
T ss_pred HHHH
T ss_conf 9995
No 7
>KOG1630 consensus
Probab=99.93 E-value=6.6e-25 Score=179.11 Aligned_cols=216 Identities=19% Similarity=0.300 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 66999999999999999999999999999985455666556678764457999999998328432677778899999877
Q gi|254780452|r 21 IDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLN 100 (259)
Q Consensus 21 ~d~~lr~Fi~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~~ 100 (259)
.-|.+|.-+..+|.+++.+..+|++.+....+++.......... |+..++.++.++...
T Consensus 107 WPqyVrdRI~sTYay~~gS~~lTA~savA~~rs~~lm~l~~rgg---------------------~va~~~tla~mi~sG 165 (336)
T KOG1630 107 WPQYVRDRIHSTYAYLAGSCGLTAASAVAISRSPALMNLMMRGG---------------------WVAIGVTLAAMIGSG 165 (336)
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHCCC---------------------HHHHHHHHHHHHHCC
T ss_conf 67999988888999971017888888998732599999985576---------------------589999999998613
Q ss_pred HHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHH
Q ss_conf 6540----1454201238999999987767899997421788999999999999999999865555-5542035789999
Q gi|254780452|r 101 VRLH----SLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQTFFITAASFGSLSLYGYTTKRD-LGPIGSFMIMGAF 175 (259)
Q Consensus 101 ~~~~----~~s~~~~~~l~~~f~~~~G~tls~i~~~y~~~~I~~A~~~Ta~if~~ls~~~~~tk~D-~s~~g~~L~~~l~ 175 (259)
.-.+ .+++...++.+.+.|...|..++|+|.+ .++...+|.+.|++|.+++|..+.+.+.| |..+|++|-+|+-
T Consensus 166 ~larsi~Yq~g~gaKhLAW~lHc~vlGAV~APlc~l-gGPiLtrAa~YTaGIVGgLStvA~cAPSeKFL~MggPLaiGlG 244 (336)
T KOG1630 166 MLARSIEYQPGPGAKHLAWLLHCGVLGAVVAPLCFL-GGPILTRAAWYTAGIVGGLSTVAACAPSEKFLNMGGPLAIGLG 244 (336)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHCCCCCEEEEE
T ss_conf 143056678885288999999877777777648861-4589999999870320115566540867887642797010022
Q ss_pred HHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999997413660-----799999999999999999999999999721567654350-47999999999999999999
Q gi|254780452|r 176 GLFLLSLVNLFMRSS-----AIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAE-RQSVIGALMLYMDFIQIFVH 249 (259)
Q Consensus 176 ~lii~~i~~~F~~s~-----~~~~~~s~~g~~iFs~~i~yDtQ~I~~~~~~~~~~~~~~-~~~I~~Al~LYlDiiNlFl~ 249 (259)
+.++.++.++|+|.. .+..+-.|+|+++||+|++||||++.+..+.++.....+ -|+|.+++++|+|.+|||++
T Consensus 245 vVFvssl~sm~LPPtta~GA~LaSmslYGGLiLFS~FLLYDTQr~vk~ae~ypq~s~~~~~dPin~~msiymdvlnifir 324 (336)
T KOG1630 245 VVFVSSLGSMFLPPTTALGAGLASMSLYGGLILFSGFLLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVLNIFIR 324 (336)
T ss_pred EEEHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 67631003221698103201267888853399888898873899999887182011268988068899999999999999
Q ss_pred HHHHHCC--CC
Q ss_conf 9999377--89
Q gi|254780452|r 250 LLRFLGS--RR 258 (259)
Q Consensus 250 iL~ilG~--rr 258 (259)
|..|+|+ ||
T Consensus 325 iv~il~ggqrr 335 (336)
T KOG1630 325 IVMILGGGQRR 335 (336)
T ss_pred HHHHHCCCCCC
T ss_conf 98642477668
No 8
>pfam06539 consensus
Probab=98.87 E-value=3.5e-06 Score=58.12 Aligned_cols=198 Identities=21% Similarity=0.245 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999999999999998545566655667876445799999999832843267777889999987765401454
Q gi|254780452|r 29 MIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLSA 108 (259)
Q Consensus 29 i~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~~~~~~~~s~ 108 (259)
+.|+-..+.+ +..+++.+|..........+.... +..++..++.+++.+..++. |+..
T Consensus 10 v~KT~ill~l-~~~~a~~~w~~~~~~~~~~~~~~~-------------------~~~i~g~i~g~vlalv~~Fk--~~~s 67 (228)
T pfam06539 10 VTKTGITLAI-LVVTAVLAWILSLGVDDVNVGAAM-------------------GVTIGGAIGGLILALVTSFK--KKPS 67 (228)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHCCCCCCCHHHHH-------------------HHHHHHHHHHHHHHHHHHHC--CCCC
T ss_conf 9999999999-999999999853453333334789-------------------99999999999999999938--8751
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCHHHHHHHHHHHHH
Q ss_conf 20123899999998776789999742-----17889999999999999999998655--555542035789999999999
Q gi|254780452|r 109 YAAKMMFLLYSALIGLSLSSFFLVYT-----SKSIVQTFFITAASFGSLSLYGYTTK--RDLGPIGSFMIMGAFGLFLLS 181 (259)
Q Consensus 109 ~~~~~l~~~f~~~~G~tls~i~~~y~-----~~~I~~A~~~Ta~if~~ls~~~~~tk--~D~s~~g~~L~~~l~~lii~~ 181 (259)
| .+-..|+.+||+.++.+...++ |..+.||...|.++|.+|-. .|+++ |-=.+.....+.+..+..+..
T Consensus 68 p---~l~~~YA~~EGl~lG~iS~~fe~~~~ypGIv~qAv~~T~~vf~~mL~-lYk~giIrvT~kf~~~v~~a~~gi~~~y 143 (228)
T pfam06539 68 P---ATALSYAAFEGVFLGSISAVFENFLGAGGIVFQAVLGTMGVFFGMLL-AYRTGLIRVTPRFYRGVMAAIIGILLLY 143 (228)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6---99999999987999999999987413897999999999999999999-9992880638779999999999999999
Q ss_pred HHHH---HCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9974---136-------607999999999999999999999999997215676543504799999999999999999999
Q gi|254780452|r 182 LVNL---FMR-------SSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLL 251 (259)
Q Consensus 182 i~~~---F~~-------s~~~~~~~s~~g~~iFs~~i~yDtQ~I~~~~~~~~~~~~~~~~~I~~Al~LYlDiiNlFl~iL 251 (259)
++|+ +++ ++.+...+|...+.+=+...+-|...|++..+++. .++..=.+|..|=...|=+.+.+|
T Consensus 144 lv~~vl~~fg~~~~~~~~g~lgI~~sl~~v~iAal~LilDFd~Ie~gv~~ga----Pk~~eW~~AfgLlvTLVWLYlEiL 219 (228)
T pfam06539 144 LGNLVLSFFGIGDPIRDSGILGIVFSLFVIVIAAFSLLLDFDFIEKGVRYGA----PKYMEWYGAFGLMVTLVWLYIEIL 219 (228)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999975787653586299999999999999999962999999998299----836299999999999999999999
Q ss_pred HHHCC
Q ss_conf 99377
Q gi|254780452|r 252 RFLGS 256 (259)
Q Consensus 252 ~ilG~ 256 (259)
|++..
T Consensus 220 RLL~~ 224 (228)
T pfam06539 220 RLLSK 224 (228)
T ss_pred HHHHH
T ss_conf 99999
No 9
>COG4760 Predicted membrane protein [Function unknown]
Probab=97.85 E-value=0.0024 Score=39.81 Aligned_cols=192 Identities=23% Similarity=0.319 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999999854556665566787644579999999983284326777788999998776540145
Q gi|254780452|r 28 YMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLS 107 (259)
Q Consensus 28 Fi~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~~~~~~~~s 107 (259)
-+.|+=..+++ ++.|++++|....+. |. ...|+..+-.++.+.++....+..+.-|
T Consensus 54 vvtkTG~tLav-~~vtavvs~~~~lv~----p~-------------------La~~ltlvGaiGGlilvLvatFgkK~~s 109 (276)
T COG4760 54 VVTKTGATLAV-LLVTAVVSFFLVLVN----PA-------------------LAMPLTLVGAIGGLILVLVATFGKKQWS 109 (276)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHCC----HH-------------------HCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 01113089999-999999999999617----77-------------------5041768988635999999985454588
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHH
Q ss_conf 420123899999998776789999------742---17889999999999999999998655-----5555420357899
Q gi|254780452|r 108 AYAAKMMFLLYSALIGLSLSSFFL------VYT---SKSIVQTFFITAASFGSLSLYGYTTK-----RDLGPIGSFMIMG 173 (259)
Q Consensus 108 ~~~~~~l~~~f~~~~G~tls~i~~------~y~---~~~I~~A~~~Ta~if~~ls~~~~~tk-----~D~s~~g~~L~~~ 173 (259)
+.. -..|+++||.-++.+.. +|+ +..|.+|.+.|-++|.+|-. .|.|. ..|+.+---...|
T Consensus 110 pai----~l~YAv~EGlFlGaiS~lla~ftV~~anaGgligqAvLgT~Gvf~gML~-vYktGaIkvTpkF~r~v~a~~~G 184 (276)
T COG4760 110 PAI----VLSYAVLEGLFLGAISFLLANFTVYEANAGGLIGQAVLGTFGVFFGMLV-VYKTGAIKVTPKFTRMVVAATFG 184 (276)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEHHHHHHHHHHHHHHHH-HHHCCCEEECCHHHHHHHHHHHH
T ss_conf 289----9899999878887799875154588423563438999998999999999-97447666550167799999888
Q ss_pred HHHHHHHHHHH-HHCC--CH------HHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999997-4136--60------7999999--999999999999999--9999972156765435047999999999
Q gi|254780452|r 174 AFGLFLLSLVN-LFMR--SS------AIDLTMS--AMGLVIFSALTAYDT--QKIKEAYSDRYDVAYAERQSVIGALMLY 240 (259)
Q Consensus 174 l~~lii~~i~~-~F~~--s~------~~~~~~s--~~g~~iFs~~i~yDt--Q~I~~~~~~~~~~~~~~~~~I~~Al~LY 240 (259)
...+.+.+++- +|.+ ++ .+..+.| |+|+.-|+..+-+|. |.+++ +. .++..=-.|+.|-
T Consensus 185 vl~L~Lgn~vla~F~Gg~~pllr~gG~~~IiFSLfcigiAAf~fllDFDaad~~vr~----GA----P~kmaWgvAlGL~ 256 (276)
T COG4760 185 VLVLMLGNFVLAMFVGGGIPLLRSGGPFGIIFSLFCIGIAAFSFLLDFDAADQMVRA----GA----PEKMAWGVALGLT 256 (276)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHH
T ss_conf 999999999999981588620247983575478999999999888511478999874----88----0563888887499
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 9999999999999377
Q gi|254780452|r 241 MDFIQIFVHLLRFLGS 256 (259)
Q Consensus 241 lDiiNlFl~iL~ilG~ 256 (259)
...+=+.+.|||++..
T Consensus 257 VTLVWLY~EiLRLLSy 272 (276)
T COG4760 257 VTLVWLYLEILRLLSY 272 (276)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999998
No 10
>PHA00027 lys lysis protein
Probab=48.54 E-value=16 Score=15.13 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=17.4
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 67654350479999999999-99999999
Q gi|254780452|r 222 RYDVAYAERQSVIGALMLYM-DFIQIFVH 249 (259)
Q Consensus 222 ~~~~~~~~~~~I~~Al~LYl-DiiNlFl~ 249 (259)
+.+++-+.+.|++-++.+++ ||-|+|+.
T Consensus 12 C~~qqRS~~LYVlI~LAIfLS~FTn~~l~ 40 (58)
T PHA00027 12 CRDQERSKRLYVLIALAIFLSDFTNIFLH 40 (58)
T ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32156310689999999999998999999
No 11
>KOG3488 consensus
Probab=45.68 E-value=17 Score=14.85 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79999999999999999999-------999999972156765435047999999999999999999999937789
Q gi|254780452|r 191 AIDLTMSAMGLVIFSALTAY-------DTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLGSRR 258 (259)
Q Consensus 191 ~~~~~~s~~g~~iFs~~i~y-------DtQ~I~~~~~~~~~~~~~~~~~I~~Al~LYlDiiNlFl~iL~ilG~rr 258 (259)
...+.++++...+|+-|+.| |.|.+.++|--..+... ..++ +|.-+-+-+|..|+..+.+=.+++
T Consensus 7 ~vgl~lv~iSl~iFtYYT~WViilPFvDs~hiihKyFLpr~yAi--~iPv-aagl~ll~lig~Fis~vMlKskkK 78 (81)
T KOG3488 7 VVGLMLVYISLAIFTYYTIWVIILPFVDSMHIIHKYFLPREYAI--TIPV-AAGLFLLCLIGTFISLVMLKSKKK 78 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 56678999999999999999863002342678999816766776--5689-999999999999999985321211
No 12
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases; InterPro: IPR011833 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described . This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site . The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins in this entry are glycosyltransferases with phosphorylase activities. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) . GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 800f its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels . There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that 'regardless of the a or b form, GPase functions as a dimer in vivo . The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain . The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments . The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible .; GO: 0004645 phosphorylase activity, 0030170 pyridoxal phosphate binding, 0005975 carbohydrate metabolic process.
Probab=41.02 E-value=8 Score=17.02 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999987767
Q gi|254780452|r 114 MFLLYSALIGLSL 126 (259)
Q Consensus 114 l~~~f~~~~G~tl 126 (259)
-|+..-+++|=+|
T Consensus 61 YYLS~EFL~GR~L 73 (822)
T TIGR02093 61 YYLSAEFLIGRLL 73 (822)
T ss_pred EEHHHHHHHHHHH
T ss_conf 4100767766778
No 13
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter; InterPro: IPR004745 Na(+)-dependent inorganic phosphate cotransporter proteins belong to this group. The mammalian proteins are important for the resorption of phosphate by the kidney and may be involved in actively transporting phosphate into cells via sodium ion cotransport in the renal brush border membrane.; GO: 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016021 integral to membrane.
Probab=37.88 E-value=23 Score=14.08 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHHHHHHHHHC--CCC
Q ss_conf 99999999999999999999854556665566787644579999999983284326777-788999998776540--145
Q gi|254780452|r 31 RVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFI-FAPLGVFIFLNVRLH--SLS 107 (259)
Q Consensus 31 kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~l~l~~~~~~~~~--~~s 107 (259)
.||..+..+.+-.---..++...|.......+.-....+. .+ .+++... +..........+... +.|
T Consensus 287 P~W~~~~a~~~~~w~~~~l~~~~P~f~~~~L~~~~~~nGl-----LS-----sLPyL~~~l~~~~~~~~AD~l~~~~~ls 356 (514)
T TIGR00894 287 PVWAIVFASFGHIWGLNTLMTYLPTFISSVLHVNIRENGL-----LS-----SLPYLLAWLCGVLASQLADYLLSRKILS 356 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----HH-----HHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9999999987533078999997779998873465312540-----43-----6799999999999998758987146502
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HCCHHHH------HHH
Q ss_conf 4201238999999987767899997421----788999999999999999999865-555554-2035789------999
Q gi|254780452|r 108 AYAAKMMFLLYSALIGLSLSSFFLVYTS----KSIVQTFFITAASFGSLSLYGYTT-KRDLGP-IGSFMIM------GAF 175 (259)
Q Consensus 108 ~~~~~~l~~~f~~~~G~tls~i~~~y~~----~~I~~A~~~Ta~if~~ls~~~~~t-k~D~s~-~g~~L~~------~l~ 175 (259)
.....=+ ..+....+..+..++..|-+ .....+++.-|..+.+...-|..+ .-|++. ..+++.. ...
T Consensus 357 ~t~~RKl-~t~ig~~~~~~~~~al~Y~snl~~~~~~i~~L~lA~~~~g~~~~G~lin~lDLaP~y~Gf~~g~~~~~g~~~ 435 (514)
T TIGR00894 357 LTAVRKL-FTFIGLLGPGIFVVALPYLSNLYNAYSTIIILTLANALAGFVLSGVLINALDLAPRYAGFIKGVTTLIGSLG 435 (514)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6778899-999998889999999998868989999999999987630010000788887622578999999999998788
Q ss_pred HHHHHHHHHHHCC--CH-H-HHH-----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999974136--60-7-999-----999999999999999999999
Q gi|254780452|r 176 GLFLLSLVNLFMR--SS-A-IDL-----TMSAMGLVIFSALTAYDTQKI 215 (259)
Q Consensus 176 ~lii~~i~~~F~~--s~-~-~~~-----~~s~~g~~iFs~~i~yDtQ~I 215 (259)
|++---++..+++ ++ . -+| +-+.+-+.=-..|+++-.-.+
T Consensus 436 Gl~~~~~~G~~l~~~~~pv~~~W~~vF~l~a~~~~~~~ifY~lf~~~e~ 484 (514)
T TIGR00894 436 GLISSTLAGQLLSQDSKPVISAWKKVFLLMAFVNVISGIFYLLFASAEI 484 (514)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7899999998624889404777799999999999987888555302103
No 14
>TIGR00930 2a30 K-Cl cotransporter; InterPro: IPR004842 This is a family of K-Cl cotransporters. It includes bumetanide-sensitive sodium-(potassium)-chloride cotransporter, an electrically silent transporter system which is a mediator of sodium and chloride reabsorption. It plays a vital role in the regulation of ionic balance and cell volume. Bumetanide-sensitive sodium-(potassium)-chloride cotransporter belongs to the SLC12A family of transporters.; GO: 0015377 cation:chloride symporter activity, 0006814 sodium ion transport, 0006821 chloride transport, 0016021 integral to membrane.
Probab=33.50 E-value=27 Score=13.63 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---H--HHHHHHHHH
Q ss_conf 14542012389999999877678999974217889999999999999999998655555542035---7--899999999
Q gi|254780452|r 105 SLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSF---M--IMGAFGLFL 179 (259)
Q Consensus 105 ~~s~~~~~~l~~~f~~~~G~tls~i~~~y~~~~I~~A~~~Ta~if~~ls~~~~~tk~D~s~~g~~---L--~~~l~~lii 179 (259)
|.+-|....+++.+.+..++.++-+=. -+-|+.-|.+.+=.++-+|.+-..--+ =..|+|- - -..+.|.+
T Consensus 544 kn~EP~~aylLT~~Ia~~filIA~Ln~---iAPiiSnFFL~sYaliNfscF~~~l~~-~PgWRP~F~yY~~~lSl~Ga~- 618 (1171)
T TIGR00930 544 KNGEPLRAYLLTFFIALLFILIAELNT---IAPIISNFFLASYALINFSCFHASLLR-SPGWRPRFRYYNWWLSLLGAI- 618 (1171)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHHHHHHHHHH-
T ss_conf 788727989999999878765521121---122678899999999999999999852-888886516787999999999-
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999741366079999999999999999999
Q gi|254780452|r 180 LSLVNLFMRSSAIDLTMSAMGLVIFSALTAY 210 (259)
Q Consensus 180 ~~i~~~F~~s~~~~~~~s~~g~~iFs~~i~y 210 (259)
.+++-||+ .+|.++.+..+|....-.|
T Consensus 619 lC~~iMFl----~~W~~alva~~i~~~lY~Y 645 (1171)
T TIGR00930 619 LCVAIMFL----ISWWAALVAIVIALLLYKY 645 (1171)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_conf 99999999----9999999999999998777
No 15
>KOG2899 consensus
Probab=32.84 E-value=28 Score=13.56 Aligned_cols=16 Identities=31% Similarity=0.737 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6999999999999999
Q gi|254780452|r 22 DQGLRAYMIRVYNLMA 37 (259)
Q Consensus 22 d~~lr~Fi~kVY~~la 37 (259)
|+|+|.|.+|.|.++-
T Consensus 185 D~GL~~ff~kis~ll~ 200 (288)
T KOG2899 185 DDGLRRFFRKISSLLH 200 (288)
T ss_pred CHHHHHHHHHHHHHHC
T ss_conf 5789999999998608
No 16
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=31.00 E-value=29 Score=13.37 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5789999999999997413660799999999999999999999999
Q gi|254780452|r 169 FMIMGAFGLFLLSLVNLFMRSSAIDLTMSAMGLVIFSALTAYDTQK 214 (259)
Q Consensus 169 ~L~~~l~~lii~~i~~~F~~s~~~~~~~s~~g~~iFs~~i~yDtQ~ 214 (259)
..+++++...+..++-+|..++.+.++...+.++.+.++...++|.
T Consensus 12 ~~~~~lI~~~iiliiv~f~~~~~l~~i~~l~~~~~~i~~l~~~~~~ 57 (655)
T COG3887 12 YIFLGLIAFSIILIIVSFSFNWWLSAIAVLLLVVFLIFLLLAFTLF 57 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999998645999999999999999999999999
No 17
>TIGR00445 mraY phospho-N-acetylmuramoyl-pentapeptide-transferase; InterPro: IPR003524 Phospho-N-acetylmuramoyl-pentapeptide-transferase (2.7.8.13 from EC) (mraY) is a bacterial enzyme responsible for the formation of the first lipid intermediate of the cell wall peptidoglycan synthesis. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with probably ten transmembrane domains. It belongs to family 4 of glycosyl transferases. Homologs of mraY have been found in the archaebacteria Methanobacterium thermoautotrophicum and in Arabidopsis thaliana (Mouse-ear cress).; GO: 0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity, 0009252 peptidoglycan biosynthetic process, 0016020 membrane.
Probab=26.71 E-value=35 Score=12.89 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH--CCH------HHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999865-5555542--035------7899999999999974136
Q gi|254780452|r 140 QTFFITAASFGSLSLYGYTT-KRDLGPI--GSF------MIMGAFGLFLLSLVNLFMR 188 (259)
Q Consensus 140 ~A~~~Ta~if~~ls~~~~~t-k~D~s~~--g~~------L~~~l~~lii~~i~~~F~~ 188 (259)
.|-..|+.+++++++.++.+ +.||+.+ -|- |..-..+++.+++--+|++
T Consensus 169 LA~~~~~~~~gal~i~a~~~gn~~F~~YLhiP~~~~~~El~if~~A~vG~~lGFLwfN 226 (336)
T TIGR00445 169 LAIGPSAIAFGALAILAWATGNANFAKYLHIPKIKDSGELVIFCTALVGASLGFLWFN 226 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCEEEEHHHHHHHHHCCHHCC
T ss_conf 8999999999999999999515106852478722156324662177872342211032
No 18
>pfam05356 Phage_Coat_B Phage Coat protein B. The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acid, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combine to form a tubular structure that encapsulates the viral DNA.
Probab=25.70 E-value=36 Score=12.78 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.5
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 55555542035789999999999997
Q gi|254780452|r 159 TKRDLGPIGSFMIMGAFGLFLLSLVN 184 (259)
Q Consensus 159 tk~D~s~~g~~L~~~l~~lii~~i~~ 184 (259)
-|-|.+..|++...++..+.+++++-
T Consensus 52 gk~dm~~iggyivgalvilavagliy 77 (83)
T pfam05356 52 GKGDMKAIGGYIVGALVILAVAGLIY 77 (83)
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 85507662123899999999999999
No 19
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A); InterPro: IPR006494 These proteins represent a paralogous family of genes found in Plasmodium falciparum and Plasmodium yoelii that are closely related to various phospholipases and lysophospholipases of plants as well as generally being related to the alpha/beta-fold superfamily of hydrolases. These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. .
Probab=23.05 E-value=41 Score=12.46 Aligned_cols=15 Identities=20% Similarity=0.505 Sum_probs=10.0
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999999377898
Q gi|254780452|r 245 QIFVHLLRFLGSRRD 259 (259)
Q Consensus 245 NlFl~iL~ilG~rr~ 259 (259)
||-||.||++|..++
T Consensus 160 NIaLR~LelL~Ks~E 174 (379)
T TIGR01607 160 NIALRVLELLNKSKE 174 (379)
T ss_pred HHHHHHHHHHCCCCH
T ss_conf 899999997334210
No 20
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=22.76 E-value=41 Score=12.42 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 788999999999999999999865555554203578999999999999741366-07999999999999999999
Q gi|254780452|r 136 KSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFMRS-SAIDLTMSAMGLVIFSALTA 209 (259)
Q Consensus 136 ~~I~~A~~~Ta~if~~ls~~~~~tk~D~s~~g~~L~~~l~~lii~~i~~~F~~s-~~~~~~~s~~g~~iFs~~i~ 209 (259)
-....++..|..+-.-+-+.+ +++-.|...-+++-..+.-+++.++++++++- ...-.++..+ ..++|.|.+
T Consensus 120 yiy~islfg~lsl~~~lrLl~-~~ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l-~~~Ws~~Aa 192 (227)
T COG5080 120 YIYGISLFGTLSLHLLLRLLG-HKNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVAL-FLIWSTYAA 192 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 106999999999999999963-5741202101775102789999999999998887999999999-999999999
No 21
>KOG2678 consensus
Probab=22.68 E-value=42 Score=12.41 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=19.1
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5555542035789999999999997413
Q gi|254780452|r 160 KRDLGPIGSFMIMGAFGLFLLSLVNLFM 187 (259)
Q Consensus 160 k~D~s~~g~~L~~~l~~lii~~i~~~F~ 187 (259)
|+|-+....++.++++++++.+++.+++
T Consensus 208 ~y~ksk~s~wf~~~miI~v~~sFVsMil 235 (244)
T KOG2678 208 KYDKSKLSYWFYITMIIFVILSFVSMIL 235 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8878633679999999999999999999
No 22
>KOG3103 consensus
Probab=20.36 E-value=46 Score=12.11 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf 899999999999999999986555555420357899999999999974136607
Q gi|254780452|r 138 IVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFMRSSA 191 (259)
Q Consensus 138 I~~A~~~Ta~if~~ls~~~~~tk~D~s~~g~~L~~~l~~lii~~i~~~F~~s~~ 191 (259)
...+...+..++.-+.+.+ .+.-.|...-+.+-..+.=+++.+.++++++...
T Consensus 145 ygi~~~gsl~iy~L~nlm~-~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g 197 (249)
T KOG3103 145 YGISLLGSLSIYFLLNLMS-NKNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQG 197 (249)
T ss_pred EEEHHHHHHHHHHHHHHHH-HCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6108888899999999971-0674301114666678889999999999870641
Done!