HHsearch alignment for GI: 254780452 and conserved domain: pfam06539

>pfam06539 consensus.
Probab=98.87  E-value=3.5e-06  Score=58.12  Aligned_cols=198  Identities=21%  Similarity=0.245  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999999999999999998545566655667876445799999999832843267777889999987765401454
Q gi|254780452|r   29 MIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLSA  108 (259)
Q Consensus        29 i~kVY~~la~~L~iT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~l~~~~~~~~~~~s~  108 (259)
T Consensus        10 v~KT~ill~l-~~~~a~~~w~~~~~~~~~~~~~~~-------------------~~~i~g~i~g~vlalv~~Fk--~~~s   67 (228)
T pfam06539        10 VTKTGITLAI-LVVTAVLAWILSLGVDDVNVGAAM-------------------GVTIGGAIGGLILALVTSFK--KKPS   67 (228)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHCCCCCCCHHHHH-------------------HHHHHHHHHHHHHHHHHHHC--CCCC
T ss_conf             9999999999-999999999853453333334789-------------------99999999999999999938--8751


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCHHHHHHHHHHHHH
Q ss_conf             20123899999998776789999742-----17889999999999999999998655--555542035789999999999
Q gi|254780452|r  109 YAAKMMFLLYSALIGLSLSSFFLVYT-----SKSIVQTFFITAASFGSLSLYGYTTK--RDLGPIGSFMIMGAFGLFLLS  181 (259)
Q Consensus       109 ~~~~~l~~~f~~~~G~tls~i~~~y~-----~~~I~~A~~~Ta~if~~ls~~~~~tk--~D~s~~g~~L~~~l~~lii~~  181 (259)
T Consensus        68 p---~l~~~YA~~EGl~lG~iS~~fe~~~~ypGIv~qAv~~T~~vf~~mL~-lYk~giIrvT~kf~~~v~~a~~gi~~~y  143 (228)
T pfam06539        68 P---ATALSYAAFEGVFLGSISAVFENFLGAGGIVFQAVLGTMGVFFGMLL-AYRTGLIRVTPRFYRGVMAAIIGILLLY  143 (228)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             6---99999999987999999999987413897999999999999999999-9992880638779999999999999999


Q ss_pred             HHHH---HCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9974---136-------607999999999999999999999999997215676543504799999999999999999999
Q gi|254780452|r  182 LVNL---FMR-------SSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLL  251 (259)
Q Consensus       182 i~~~---F~~-------s~~~~~~~s~~g~~iFs~~i~yDtQ~I~~~~~~~~~~~~~~~~~I~~Al~LYlDiiNlFl~iL  251 (259)
T Consensus       144 lv~~vl~~fg~~~~~~~~g~lgI~~sl~~v~iAal~LilDFd~Ie~gv~~ga----Pk~~eW~~AfgLlvTLVWLYlEiL  219 (228)
T pfam06539       144 LGNLVLSFFGIGDPIRDSGILGIVFSLFVIVIAAFSLLLDFDFIEKGVRYGA----PKYMEWYGAFGLMVTLVWLYIEIL  219 (228)
T ss_pred             HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999975787653586299999999999999999962999999998299----836299999999999999999999


Q ss_pred             HHHCC
Q ss_conf             99377
Q gi|254780452|r  252 RFLGS  256 (259)
Q Consensus       252 ~ilG~  256 (259)
T Consensus       220 RLL~~  224 (228)
T pfam06539       220 RLLSK  224 (228)
T ss_pred             HHHHH
T ss_conf             99999