Query gi|254780452|ref|YP_003064865.1| hypothetical protein CLIBASIA_01685 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 259
No_of_seqs 135 out of 1134
Neff 7.3
Searched_HMMs 23785
Date Mon May 30 11:52:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780452.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pfi_A Major coat protein of P 30.6 18 0.00076 13.3 2.8 26 159-184 15-40 (46)
2 2job_A Antilipopolysaccharide 8.2 64 0.0027 9.8 2.1 22 12-33 65-86 (102)
3 3ke2_A Uncharacterized protein 6.8 82 0.0035 9.1 1.1 23 15-37 6-28 (117)
4 3cm1_A SSGA-like sporulation-s 6.2 92 0.0039 8.8 0.9 20 19-38 102-121 (139)
5 2v6x_A Vacuolar protein sortin 5.8 1E+02 0.0042 8.5 2.9 21 233-253 29-49 (85)
6 1waz_A MERF; protein structure 5.8 1E+02 0.0042 8.5 2.2 15 147-161 29-43 (46)
7 2h4m_C Hnrpa1 protein, fragmen 5.7 1E+02 0.0043 8.4 0.2 12 2-13 5-16 (49)
8 1svd_M Ribulose bisphosphate c 5.6 1.1E+02 0.0044 8.4 1.3 10 1-10 1-10 (110)
9 1r5q_A KAI A, circadian oscill 5.1 1.2E+02 0.005 8.0 1.5 29 5-33 16-44 (102)
10 2if1_A EIF1, SUI1; translation 4.7 1.1E+02 0.0046 8.3 -0.4 16 1-16 14-29 (126)
No 1
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 3ifm_A 4ifm_A
Probab=30.57 E-value=18 Score=13.32 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=21.1
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 55555542035789999999999997
Q gi|254780452|r 159 TKRDLGPIGSFMIMGAFGLFLLSLVN 184 (259)
Q Consensus 159 tk~D~s~~g~~L~~~l~~lii~~i~~ 184 (259)
-|-|.+..|++...++..+.+++++-
T Consensus 15 gk~dm~~iggyivgalvilavagliy 40 (46)
T 1pfi_A 15 GQGDMKAIGGYIVGALVILAVAGLIY 40 (46)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 85507763023999999999999999
No 2
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=8.23 E-value=64 Score=9.78 Aligned_cols=22 Identities=5% Similarity=0.188 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3200024556699999999999
Q gi|254780452|r 12 NSGSGFGSTIDQGLRAYMIRVY 33 (259)
Q Consensus 12 ~~~~~~~~~~d~~lr~Fi~kVY 33 (259)
..+.+.+..++...|.|++|-.
T Consensus 65 s~TrSrsgvv~~a~rDFV~KA~ 86 (102)
T 2job_A 65 ASTRSQSGVAGKTAKDFVRKAF 86 (102)
T ss_dssp EEESCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4343210025468999999999
No 3
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=6.81 E-value=82 Score=9.09 Aligned_cols=23 Identities=13% Similarity=0.350 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00245566999999999999999
Q gi|254780452|r 15 SGFGSTIDQGLRAYMIRVYNLMA 37 (259)
Q Consensus 15 ~~~~~~~d~~lr~Fi~kVY~~la 37 (259)
.+..+++++.-++|.||.|-...
T Consensus 6 ~~~~~evSKtk~sF~RRLYlA~L 28 (117)
T 3ke2_A 6 NASGDQVSKQHKAFLRKLYLAHL 28 (117)
T ss_dssp ---CCSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42155666679999999999999
No 4
>3cm1_A SSGA-like sporulation-specific cell division protein; YP_290167.1, streptomyces sporulation and cell division protein, structural genomics; 2.60A {Thermobifida fusca YX}
Probab=6.24 E-value=92 Score=8.76 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 55669999999999999999
Q gi|254780452|r 19 STIDQGLRAYMIRVYNLMAL 38 (259)
Q Consensus 19 ~~~d~~lr~Fi~kVY~~la~ 38 (259)
....+.+++|++++|..+-.
T Consensus 102 ~~~~~~l~~FL~rT~~lVP~ 121 (139)
T 3cm1_A 102 HAQVAPLSEFLHRTYELVPA 121 (139)
T ss_dssp EEEHHHHHHHHHHHHHHSCT
T ss_pred EEEHHHHHHHHHHHHHHCCC
T ss_conf 97179999999988855899
No 5
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, cytoplasm, transport, ESCRT-III, MVB, VPS2, VPS4, SKD1; 1.98A {Saccharomyces cerevisiae}
Probab=5.81 E-value=1e+02 Score=8.51 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q gi|254780452|r 233 VIGALMLYMDFIQIFVHLLRF 253 (259)
Q Consensus 233 I~~Al~LYlDiiNlFl~iL~i 253 (259)
--.|+.+|.+-+.+|+..++-
T Consensus 29 y~eA~~~Y~~ai~~l~~~~~~ 49 (85)
T 2v6x_A 29 YEEAYTAYYNGLDYLMLALKY 49 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999674
No 6
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=5.80 E-value=1e+02 Score=8.50 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999986555
Q gi|254780452|r 147 ASFGSLSLYGYTTKR 161 (259)
Q Consensus 147 ~if~~ls~~~~~tk~ 161 (259)
+.|+++++|+..-|+
T Consensus 29 a~FigLT~YA~~r~~ 43 (46)
T 1waz_A 29 AIFIGLTIYAIQRKR 43 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999987
No 7
>2h4m_C Hnrpa1 protein, fragment; heat repeat, nuclear import complex, protein transport; 3.05A {Homo sapiens}
Probab=5.71 E-value=1e+02 Score=8.45 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=6.8
Q ss_pred CHHHHHHHCCCC
Q ss_conf 401454210232
Q gi|254780452|r 2 SDIRNYQRVVNS 13 (259)
Q Consensus 2 ~~~~n~~~~~~~ 13 (259)
+|+.||++-.+.
T Consensus 5 nDFGnYnnqsSn 16 (49)
T 2h4m_C 5 NDFGNYNNQSSN 16 (49)
T ss_dssp ------CCBCCC
T ss_pred CCCCCCCCCCCC
T ss_conf 221233665576
No 8
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=5.61 E-value=1.1e+02 Score=8.38 Aligned_cols=10 Identities=20% Similarity=0.803 Sum_probs=7.6
Q ss_pred CCHHHHHHHC
Q ss_conf 9401454210
Q gi|254780452|r 1 MSDIRNYQRV 10 (259)
Q Consensus 1 m~~~~n~~~~ 10 (259)
|++|++|++.
T Consensus 1 ~~~~~~~~~~ 10 (110)
T 1svd_M 1 MAEMQDYKQS 10 (110)
T ss_dssp --CCCCCCCC
T ss_pred CCCCCCCCCC
T ss_conf 9531145646
No 9
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=5.06 E-value=1.2e+02 Score=8.02 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 45421023200024556699999999999
Q gi|254780452|r 5 RNYQRVVNSGSGFGSTIDQGLRAYMIRVY 33 (259)
Q Consensus 5 ~n~~~~~~~~~~~~~~~d~~lr~Fi~kVY 33 (259)
++|++..-+-.+.+.++++.+-+|+...|
T Consensus 16 ~~YR~ill~YF~~d~~~nq~id~fVn~aF 44 (102)
T 1r5q_A 16 SDYRQILLSYFTTDKALKEKIDKFINAVF 44 (102)
T ss_dssp HHHHHHHHHTTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999991895778999999999999
No 10
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=4.74 E-value=1.1e+02 Score=8.25 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCHHHHHHHCCCCCCH
Q ss_conf 9401454210232000
Q gi|254780452|r 1 MSDIRNYQRVVNSGSG 16 (259)
Q Consensus 1 m~~~~n~~~~~~~~~~ 16 (259)
||+++|.+..++.+..
T Consensus 14 ~~~iqnl~s~dpfad~ 29 (126)
T 2if1_A 14 MSAIQNLHSFDPFADA 29 (126)
T ss_dssp GGGCSCCCCCCTTSSC
T ss_pred CHHHHCCCCCCCCCCC
T ss_conf 0220246668986554
Done!