RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780452|ref|YP_003064865.1| hypothetical protein CLIBASIA_01685 [Candidatus Liberibacter asiaticus str. psy62] (259 letters) >gnl|CDD|100120 cd06181, BI-1-like, BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.. Length = 212 Score = 153 bits (390), Expect = 4e-38 Identities = 85/235 (36%), Positives = 131/235 (55%), Gaps = 24/235 (10%) Query: 24 GLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSP 83 R ++ +VY L+AL L VT ++++L + ++ +P Sbjct: 1 IRRGFLRKVYGLLALQLLVTALVAYLG-------------------MFSPPLRNVLSNTP 41 Query: 84 LRWIFIFAPLGVFIFLNV-RLHSLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQTF 142 L W+ + A LG+ I L R+ S+ A ++ L++AL+G++L VYT+ S++Q F Sbjct: 42 LGWLLLLAFLGLVILLFCCRIKRRSSPANLILLFLFTALMGVTLGPILSVYTAASVLQAF 101 Query: 143 FITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFMRSSAIDLTMSAMGLV 202 ITAA FG LSLY TTKRD +G F+ MG L + SLVN+F++S A+ L +SA+G++ Sbjct: 102 GITAAVFGGLSLYALTTKRDFSFLGGFLFMGLIVLIVASLVNIFLQSPALQLAISALGVL 161 Query: 203 IFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLGSR 257 +FS YDTQ I Y + + ++ AL LY+D I +F+ LLR LGSR Sbjct: 162 LFSGYILYDTQLIIG----GYRLYLSPDDYILAALSLYLDIINLFLSLLRILGSR 212 >gnl|CDD|31014 COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]. Length = 233 Score = 111 bits (279), Expect = 2e-25 Identities = 99/239 (41%), Positives = 139/239 (58%), Gaps = 31/239 (12%) Query: 22 DQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYT 81 D GL ++ +VY L+ALGL VT + + L L + L+ Sbjct: 17 DLGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLG-------------------LLSL 57 Query: 82 SPLRWIFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKS---- 137 SP ++ I A L FL+ +++ S+ A ++F +Y+AL+GL+LS LVY + S Sbjct: 58 SPPGFVLIIAGLAGVFFLSRKINK-SSPTALILFFVYTALVGLTLSPILLVYAAISGGDA 116 Query: 138 IVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFMRSSAIDLTMS 197 I F ITA FG+LSLYGYTTKRDL +GSF+ M GL + SLVN+F+ SSA+ L +S Sbjct: 117 IAAAFGITALVFGALSLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFLGSSALHLAIS 176 Query: 198 AMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLGS 256 +G++IFS L AYDTQ IK + ER +++GAL LY+DFI +F+ LLR LG Sbjct: 177 VLGVLIFSGLIAYDTQNIKR-------MEGGERLAIMGALSLYLDFINLFLSLLRILGI 228 >gnl|CDD|144568 pfam01027, UPF0005, Uncharacterized protein family UPF0005. The Pfam entry finds members not in the Prosite definition. Length = 203 Score = 93.7 bits (234), Expect = 4e-20 Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 35/233 (15%) Query: 27 AYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRW 86 + + Y L+AL L +T +++ S+ + M G Sbjct: 1 KVLRKTYALLALTLLLTAAGAYV-------------SMALLLPFMAGGP----------L 37 Query: 87 IFIFAPLGVFIFLNVRLHSLSAYAAKM-MFLLYSALIGLSLSS--FFLVYTSKSIVQTFF 143 + + LG+ FL + + + ++ +GL+L F + ++ Sbjct: 38 LSLIGFLGLLFFLLAAPRNSKNSPKGLLLLFAFTFFMGLTLGPLLNFYLANPSIVMTALG 97 Query: 144 ITAASFGSLSLYGYTTKR-DLGPIGSFMIMGAFGLFLLSLVNLFMRSSAIDLTMSAMGLV 202 TAA FG LS Y T K+ D +G F+ G L + SL N+F +S A+ L +S GL+ Sbjct: 98 GTAAIFGGLSAYALTAKKRDFSFLGGFLFAGLIVLIVASLANIFFQSPALQLAISYGGLL 157 Query: 203 IFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLG 255 +FS YDTQ I + E ++ A+ LY+DFI +FV LL+ LG Sbjct: 158 LFSGFILYDTQNIIKRGG--------ETDYIMAAVSLYLDFINLFVRLLQILG 202 >gnl|CDD|37533 KOG2322, KOG2322, KOG2322, N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]. Length = 237 Score = 46.4 bits (110), Expect = 9e-06 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 14/158 (8%) Query: 87 IFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQTFFITA 146 +FI L + +R S ++ +++ Y +K ++ IT Sbjct: 92 VFIVTYLSLACCEGLRRKSPVNL---ILLGIFTLAEAFMTGLVTAFYDAKVVLLALIITT 148 Query: 147 ASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSL-VNLFMRSSAIDLTMSAMGLVIFS 205 SL+L+ TK D +G F+ L L L F + + +A+G ++F Sbjct: 149 VVVLSLTLFTLQTKYDFTSLGGFLFALLIVLLLFGLIFLFFPYGPILVMVYAALGALLFC 208 Query: 206 ALTAYDTQKI-KEAYSDRYDVAYAERQSVIGALMLYMD 242 YDTQ + + Y + AL LY+D Sbjct: 209 GYLVYDTQLLMGRISPEEY---------IFAALNLYLD 237 >gnl|CDD|36842 KOG1629, KOG1629, KOG1629, Bax-mediated apoptosis inhibitor TEGT/BI-1 [Defense mechanisms]. Length = 235 Score = 41.4 bits (97), Expect = 3e-04 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 10/145 (6%) Query: 114 MFLLYSALIGLSLSSF--FLVYTSKSIVQTFFI-TAASFGSLSLYG-YTTKRDLGPIGSF 169 + L++ L G S+ F + SI+ T F+ TA F S +R+ +G Sbjct: 82 LLFLFAFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSASAMLARRREYLYLGGL 141 Query: 170 MIMGAFGLFLLSLVNLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAE 229 + G L LSL N F S + +GL++F DTQ+I E + + Sbjct: 142 LSSGLSLLLWLSLANSFFGSIWVFKFQLYVGLLVFVGFIVVDTQEIIE------KAHHGD 195 Query: 230 RQSVIGALMLYMDFIQIFVHLLRFL 254 V +L L+ DF+ +F +L L Sbjct: 196 MDYVQHSLDLFTDFVSVFRRILIIL 220 >gnl|CDD|36843 KOG1630, KOG1630, KOG1630, Growth hormone-induced protein and related proteins [Signal transduction mechanisms]. Length = 336 Score = 35.4 bits (81), Expect = 0.015 Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 22/186 (11%) Query: 86 WIFIFAPLGVFIFLNVRLHSL----SAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQT 141 W+ I L I + S+ A + +LL+ ++G ++ + + + Sbjct: 151 WVAIGVTLAAMIGSGMLARSIEYQPGPGAKHLAWLLHCGVLGAVVAPLCFL-GGPILTRA 209 Query: 142 FFITAASFGSLSLYGYTTKRDLGPIGSFMIMGA-----FGL-FLLSLVNLFMR-SSAIDL 194 + TA G LS P F+ MG G+ F+ SL ++F+ ++A+ Sbjct: 210 AWYTAGIVGGLSTVAAC-----APSEKFLNMGGPLAIGLGVVFVSSLGSMFLPPTTALGA 264 Query: 195 TMSAM----GLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALM-LYMDFIQIFVH 249 +++M GL++FS YDTQ++ ++ + I A M +YMD + IF+ Sbjct: 265 GLASMSLYGGLILFSGFLLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVLNIFIR 324 Query: 250 LLRFLG 255 ++ LG Sbjct: 325 IVMILG 330 >gnl|CDD|31275 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]. Length = 342 Score = 32.5 bits (74), Expect = 0.11 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%) Query: 37 ALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALM 79 AL + GI+ + +L T P+ A+ I+ RG++LTG GAL+ Sbjct: 255 ALEEPLNGIVEAIRLVLEKT-PPELAADIVERGIVLTGGGALL 296 >gnl|CDD|147559 pfam05434, Tmemb_9, TMEM9. This family contains several eukaryotic transmembrane proteins which are homologous to human transmembrane protein 9. The TMEM9 gene encodes a 183 amino-acid protein that contains an N-terminal signal peptide, a single transmembrane region, three potential N-glycosylation sites and three conserved cys-rich domains in the N-terminus, but no known functional domains. The protein is highly conserved between species from Caenorhabditis elegans to man and belongs to a novel family of transmembrane proteins. The exact function of TMEM9 is unknown although it has been found to be widely expressed and localized to the late endosomes and lysosomes. Members of this family contain pfam03128 repeats in their N-terminal region. Length = 149 Score = 32.2 bits (73), Expect = 0.17 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 12/48 (25%) Query: 217 EAYSDRYDVAYAERQ------------SVIGALMLYMDFIQIFVHLLR 252 EAY R + Y ER S+IG L+LYM F+ + LLR Sbjct: 36 EAYCLRCECKYEERSTTTIKVTIIIYLSIIGLLLLYMLFLMLLDPLLR 83 >gnl|CDD|37405 KOG2194, KOG2194, KOG2194, Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones, General function prediction only]. Length = 834 Score = 29.6 bits (66), Expect = 0.93 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 5/135 (3%) Query: 72 LTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFL 131 L+ +M +R ++ L +F ++ L++L+ L + LI F Sbjct: 469 LSILLIIMTYYGIRSAYLPLLLLLFYVISYLLNTLTILHLCGTLYLITLLICQVGPFLFA 528 Query: 132 VYTSKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFMRSSA 191 Y++ S+V+TF FG+ + + +F G FL+ LV+LF RS + Sbjct: 529 AYSTYSLVRTFIPMMGRFGN----ASNPDLSISFLNAFGANLIVG-FLIPLVHLFRRSKS 583 Query: 192 IDLTMSAMGLVIFSA 206 I L + + VI Sbjct: 584 IILGLFGITAVILII 598 >gnl|CDD|31157 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]. Length = 518 Score = 27.7 bits (61), Expect = 3.6 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 9/116 (7%) Query: 75 FGALMYTSPLRWIFIFAPLGVFIF---LNVRLHSLSAYAA--KMMFLLYSALIGLSLSSF 129 FG + + W+ +G+ + L + + L+A+ A ++ + + + +L Sbjct: 69 FGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRLWFALLVV 128 Query: 130 FLVYTSKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGL-FLLSLVN 184 + + ++ + +T + L GY+ + + G + L FL+ VN Sbjct: 129 PSAWVAAEWLRGWSLTGFPWLLL---GYSQWSPSPLLQLASLGGVWLLSFLVVAVN 181 >gnl|CDD|36836 KOG1623, KOG1623, KOG1623, Multitransmembrane protein [General function prediction only]. Length = 243 Score = 26.7 bits (59), Expect = 5.9 Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 14/109 (12%) Query: 35 LMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWI------- 87 ++AL LGV G++ L +L D + G++ F M+ +PL I Sbjct: 99 VLALVLGVIGLIILLTLLLF----HDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTK 154 Query: 88 ---FIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFLVY 133 ++ PL +FL L K F+ ++G L L+ Sbjct: 155 SVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLIL 203 >gnl|CDD|176986 CHL00045, ccsA, cytochrome c biogenesis protein. Length = 319 Score = 26.3 bits (59), Expect = 8.3 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 113 MMFLLYSALIGLSLSSF-FLVYTSKSIVQTFFIT 145 MM L Y+AL+ SL S LV T + + F Sbjct: 143 MMILSYAALLCGSLLSIALLVITFRKNIDIFGKK 176 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.331 0.142 0.405 Gapped Lambda K H 0.267 0.0779 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,042,913 Number of extensions: 170008 Number of successful extensions: 889 Number of sequences better than 10.0: 1 Number of HSP's gapped: 858 Number of HSP's successfully gapped: 152 Length of query: 259 Length of database: 6,263,737 Length adjustment: 92 Effective length of query: 167 Effective length of database: 4,275,709 Effective search space: 714043403 Effective search space used: 714043403 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 56 (25.3 bits)