RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780452|ref|YP_003064865.1| hypothetical protein
CLIBASIA_01685 [Candidatus Liberibacter asiaticus str. psy62]
(259 letters)
>gnl|CDD|100120 cd06181, BI-1-like, BAX inhibitor (BI)-1 like protein family.
Mammalian members of this family of small transmembrane
proteins have been shown to have an antiapoptotic effect
either by stimulating the antiapoptotic function of
Bcl-2, a well characterized oncogene, or inhibiting the
proapoptotic effect of Bax, another member of the Bcl-2
family. Their broad tissue distribution and high degree
of conservation suggests an important regulatory role.
In plants, BI-1 like proteins play a role in pathogen
resistance. A prokaryotic member, E.coli YccA, has been
shown to interact with ATP-dependent protease FtsH,
which degrades abnormal membrane proteins as part of a
quality control mechanism to keep the integrity of
biological membranes..
Length = 212
Score = 153 bits (390), Expect = 4e-38
Identities = 85/235 (36%), Positives = 131/235 (55%), Gaps = 24/235 (10%)
Query: 24 GLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSP 83
R ++ +VY L+AL L VT ++++L + ++ +P
Sbjct: 1 IRRGFLRKVYGLLALQLLVTALVAYLG-------------------MFSPPLRNVLSNTP 41
Query: 84 LRWIFIFAPLGVFIFLNV-RLHSLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQTF 142
L W+ + A LG+ I L R+ S+ A ++ L++AL+G++L VYT+ S++Q F
Sbjct: 42 LGWLLLLAFLGLVILLFCCRIKRRSSPANLILLFLFTALMGVTLGPILSVYTAASVLQAF 101
Query: 143 FITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFMRSSAIDLTMSAMGLV 202
ITAA FG LSLY TTKRD +G F+ MG L + SLVN+F++S A+ L +SA+G++
Sbjct: 102 GITAAVFGGLSLYALTTKRDFSFLGGFLFMGLIVLIVASLVNIFLQSPALQLAISALGVL 161
Query: 203 IFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLGSR 257
+FS YDTQ I Y + + ++ AL LY+D I +F+ LLR LGSR
Sbjct: 162 LFSGYILYDTQLIIG----GYRLYLSPDDYILAALSLYLDIINLFLSLLRILGSR 212
>gnl|CDD|31014 COG0670, COG0670, Integral membrane protein, interacts with FtsH
[General function prediction only].
Length = 233
Score = 111 bits (279), Expect = 2e-25
Identities = 99/239 (41%), Positives = 139/239 (58%), Gaps = 31/239 (12%)
Query: 22 DQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYT 81
D GL ++ +VY L+ALGL VT + + L L + L+
Sbjct: 17 DLGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLG-------------------LLSL 57
Query: 82 SPLRWIFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKS---- 137
SP ++ I A L FL+ +++ S+ A ++F +Y+AL+GL+LS LVY + S
Sbjct: 58 SPPGFVLIIAGLAGVFFLSRKINK-SSPTALILFFVYTALVGLTLSPILLVYAAISGGDA 116
Query: 138 IVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFMRSSAIDLTMS 197
I F ITA FG+LSLYGYTTKRDL +GSF+ M GL + SLVN+F+ SSA+ L +S
Sbjct: 117 IAAAFGITALVFGALSLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFLGSSALHLAIS 176
Query: 198 AMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLGS 256
+G++IFS L AYDTQ IK + ER +++GAL LY+DFI +F+ LLR LG
Sbjct: 177 VLGVLIFSGLIAYDTQNIKR-------MEGGERLAIMGALSLYLDFINLFLSLLRILGI 228
>gnl|CDD|144568 pfam01027, UPF0005, Uncharacterized protein family UPF0005. The
Pfam entry finds members not in the Prosite definition.
Length = 203
Score = 93.7 bits (234), Expect = 4e-20
Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 27 AYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRW 86
+ + Y L+AL L +T +++ S+ + M G
Sbjct: 1 KVLRKTYALLALTLLLTAAGAYV-------------SMALLLPFMAGGP----------L 37
Query: 87 IFIFAPLGVFIFLNVRLHSLSAYAAKM-MFLLYSALIGLSLSS--FFLVYTSKSIVQTFF 143
+ + LG+ FL + + + ++ +GL+L F + ++
Sbjct: 38 LSLIGFLGLLFFLLAAPRNSKNSPKGLLLLFAFTFFMGLTLGPLLNFYLANPSIVMTALG 97
Query: 144 ITAASFGSLSLYGYTTKR-DLGPIGSFMIMGAFGLFLLSLVNLFMRSSAIDLTMSAMGLV 202
TAA FG LS Y T K+ D +G F+ G L + SL N+F +S A+ L +S GL+
Sbjct: 98 GTAAIFGGLSAYALTAKKRDFSFLGGFLFAGLIVLIVASLANIFFQSPALQLAISYGGLL 157
Query: 203 IFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLG 255
+FS YDTQ I + E ++ A+ LY+DFI +FV LL+ LG
Sbjct: 158 LFSGFILYDTQNIIKRGG--------ETDYIMAAVSLYLDFINLFVRLLQILG 202
>gnl|CDD|37533 KOG2322, KOG2322, KOG2322, N-methyl-D-aspartate receptor
glutamate-binding subunit [Signal transduction
mechanisms].
Length = 237
Score = 46.4 bits (110), Expect = 9e-06
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 14/158 (8%)
Query: 87 IFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQTFFITA 146
+FI L + +R S ++ +++ Y +K ++ IT
Sbjct: 92 VFIVTYLSLACCEGLRRKSPVNL---ILLGIFTLAEAFMTGLVTAFYDAKVVLLALIITT 148
Query: 147 ASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSL-VNLFMRSSAIDLTMSAMGLVIFS 205
SL+L+ TK D +G F+ L L L F + + +A+G ++F
Sbjct: 149 VVVLSLTLFTLQTKYDFTSLGGFLFALLIVLLLFGLIFLFFPYGPILVMVYAALGALLFC 208
Query: 206 ALTAYDTQKI-KEAYSDRYDVAYAERQSVIGALMLYMD 242
YDTQ + + Y + AL LY+D
Sbjct: 209 GYLVYDTQLLMGRISPEEY---------IFAALNLYLD 237
>gnl|CDD|36842 KOG1629, KOG1629, KOG1629, Bax-mediated apoptosis inhibitor
TEGT/BI-1 [Defense mechanisms].
Length = 235
Score = 41.4 bits (97), Expect = 3e-04
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 10/145 (6%)
Query: 114 MFLLYSALIGLSLSSF--FLVYTSKSIVQTFFI-TAASFGSLSLYG-YTTKRDLGPIGSF 169
+ L++ L G S+ F + SI+ T F+ TA F S +R+ +G
Sbjct: 82 LLFLFAFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSASAMLARRREYLYLGGL 141
Query: 170 MIMGAFGLFLLSLVNLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAE 229
+ G L LSL N F S + +GL++F DTQ+I E + +
Sbjct: 142 LSSGLSLLLWLSLANSFFGSIWVFKFQLYVGLLVFVGFIVVDTQEIIE------KAHHGD 195
Query: 230 RQSVIGALMLYMDFIQIFVHLLRFL 254
V +L L+ DF+ +F +L L
Sbjct: 196 MDYVQHSLDLFTDFVSVFRRILIIL 220
>gnl|CDD|36843 KOG1630, KOG1630, KOG1630, Growth hormone-induced protein and
related proteins [Signal transduction mechanisms].
Length = 336
Score = 35.4 bits (81), Expect = 0.015
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 22/186 (11%)
Query: 86 WIFIFAPLGVFIFLNVRLHSL----SAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQT 141
W+ I L I + S+ A + +LL+ ++G ++ + + +
Sbjct: 151 WVAIGVTLAAMIGSGMLARSIEYQPGPGAKHLAWLLHCGVLGAVVAPLCFL-GGPILTRA 209
Query: 142 FFITAASFGSLSLYGYTTKRDLGPIGSFMIMGA-----FGL-FLLSLVNLFMR-SSAIDL 194
+ TA G LS P F+ MG G+ F+ SL ++F+ ++A+
Sbjct: 210 AWYTAGIVGGLSTVAAC-----APSEKFLNMGGPLAIGLGVVFVSSLGSMFLPPTTALGA 264
Query: 195 TMSAM----GLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALM-LYMDFIQIFVH 249
+++M GL++FS YDTQ++ ++ + I A M +YMD + IF+
Sbjct: 265 GLASMSLYGGLILFSGFLLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVLNIFIR 324
Query: 250 LLRFLG 255
++ LG
Sbjct: 325 IVMILG 330
>gnl|CDD|31275 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 32.5 bits (74), Expect = 0.11
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 37 ALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALM 79
AL + GI+ + +L T P+ A+ I+ RG++LTG GAL+
Sbjct: 255 ALEEPLNGIVEAIRLVLEKT-PPELAADIVERGIVLTGGGALL 296
>gnl|CDD|147559 pfam05434, Tmemb_9, TMEM9. This family contains several eukaryotic
transmembrane proteins which are homologous to human
transmembrane protein 9. The TMEM9 gene encodes a 183
amino-acid protein that contains an N-terminal signal
peptide, a single transmembrane region, three potential
N-glycosylation sites and three conserved cys-rich
domains in the N-terminus, but no known functional
domains. The protein is highly conserved between species
from Caenorhabditis elegans to man and belongs to a
novel family of transmembrane proteins. The exact
function of TMEM9 is unknown although it has been found
to be widely expressed and localized to the late
endosomes and lysosomes. Members of this family contain
pfam03128 repeats in their N-terminal region.
Length = 149
Score = 32.2 bits (73), Expect = 0.17
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Query: 217 EAYSDRYDVAYAERQ------------SVIGALMLYMDFIQIFVHLLR 252
EAY R + Y ER S+IG L+LYM F+ + LLR
Sbjct: 36 EAYCLRCECKYEERSTTTIKVTIIIYLSIIGLLLLYMLFLMLLDPLLR 83
>gnl|CDD|37405 KOG2194, KOG2194, KOG2194, Aminopeptidases of the M20 family
[Posttranslational modification, protein turnover,
chaperones, General function prediction only].
Length = 834
Score = 29.6 bits (66), Expect = 0.93
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Query: 72 LTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFL 131
L+ +M +R ++ L +F ++ L++L+ L + LI F
Sbjct: 469 LSILLIIMTYYGIRSAYLPLLLLLFYVISYLLNTLTILHLCGTLYLITLLICQVGPFLFA 528
Query: 132 VYTSKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFMRSSA 191
Y++ S+V+TF FG+ + + +F G FL+ LV+LF RS +
Sbjct: 529 AYSTYSLVRTFIPMMGRFGN----ASNPDLSISFLNAFGANLIVG-FLIPLVHLFRRSKS 583
Query: 192 IDLTMSAMGLVIFSA 206
I L + + VI
Sbjct: 584 IILGLFGITAVILII 598
>gnl|CDD|31157 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope
biogenesis, outer membrane].
Length = 518
Score = 27.7 bits (61), Expect = 3.6
Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 75 FGALMYTSPLRWIFIFAPLGVFIF---LNVRLHSLSAYAA--KMMFLLYSALIGLSLSSF 129
FG + + W+ +G+ + L + + L+A+ A ++ + + + +L
Sbjct: 69 FGFGFFLAGFYWLGTSLGVGLGLLAVALPLLVLLLAAWLALFLLLVAVLTCRLWFALLVV 128
Query: 130 FLVYTSKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGL-FLLSLVN 184
+ + ++ + +T + L GY+ + + G + L FL+ VN
Sbjct: 129 PSAWVAAEWLRGWSLTGFPWLLL---GYSQWSPSPLLQLASLGGVWLLSFLVVAVN 181
>gnl|CDD|36836 KOG1623, KOG1623, KOG1623, Multitransmembrane protein [General
function prediction only].
Length = 243
Score = 26.7 bits (59), Expect = 5.9
Identities = 25/109 (22%), Positives = 42/109 (38%), Gaps = 14/109 (12%)
Query: 35 LMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGFGALMYTSPLRWI------- 87
++AL LGV G++ L +L D + G++ F M+ +PL I
Sbjct: 99 VLALVLGVIGLIILLTLLLF----HDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTK 154
Query: 88 ---FIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFLVY 133
++ PL +FL L K F+ ++G L L+
Sbjct: 155 SVEYMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLIL 203
>gnl|CDD|176986 CHL00045, ccsA, cytochrome c biogenesis protein.
Length = 319
Score = 26.3 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 113 MMFLLYSALIGLSLSSF-FLVYTSKSIVQTFFIT 145
MM L Y+AL+ SL S LV T + + F
Sbjct: 143 MMILSYAALLCGSLLSIALLVITFRKNIDIFGKK 176
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.331 0.142 0.405
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,042,913
Number of extensions: 170008
Number of successful extensions: 889
Number of sequences better than 10.0: 1
Number of HSP's gapped: 858
Number of HSP's successfully gapped: 152
Length of query: 259
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,275,709
Effective search space: 714043403
Effective search space used: 714043403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.3 bits)