RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780452|ref|YP_003064865.1| hypothetical protein
CLIBASIA_01685 [Candidatus Liberibacter asiaticus str. psy62]
         (259 letters)



>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown
           function, PSI-2, protein structure initiative; 2.10A
           {Escherichia coli K12} (A:)
          Length = 166

 Score = 25.9 bits (57), Expect = 5.8
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 194 LTMSAMGLVIFSALTAYDTQKIKEAYSDRYDV 225
             +S  G+   +A T    Q I +A    Y +
Sbjct: 14  TKVSEQGVGELTASTPLQEQAIADALDGDYRL 45


>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma
           subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus}
           (A:1-181)
          Length = 181

 Score = 25.5 bits (55), Expect = 7.7
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 2/72 (2%)

Query: 16  GFGSTIDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVMLTGF 75
                         +   N    G     ++  L N     + P    +++  G    G 
Sbjct: 51  LMHQCEIWRELFSPLHALNFGIGGDSTQHVLWRLENGELEHIRPKI--VVVWVGTNNHGH 108

Query: 76  GALMYTSPLRWI 87
            A   T  ++ I
Sbjct: 109 TAEQVTGGIKAI 120


>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70,
          FTSZ, structural protein; 2.10A {Thermotoga maritima}
          (A:143-177,A:253-311)
          Length = 94

 Score = 25.3 bits (56), Expect = 8.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 59 PDAASIIINRGVMLTGFGALM 79
          P+  S II RG+ LTG G+L+
Sbjct: 53 PELVSDIIERGIFLTGGGSLL 73


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.331    0.142    0.405 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,781,697
Number of extensions: 72372
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 16
Length of query: 259
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 172
Effective length of database: 2,015,014
Effective search space: 346582408
Effective search space used: 346582408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.8 bits)