RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780452|ref|YP_003064865.1| hypothetical protein
CLIBASIA_01685 [Candidatus Liberibacter asiaticus str. psy62]
(259 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 30.3 bits (68), Expect = 0.42
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 34/85 (40%)
Query: 2 SDIRNYQRVVNSGSGFGSTIDQGLRAYMI---RVYNLMALGLGVTGIMSF---------- 48
SD+R SGS +D I V T I+ F
Sbjct: 466 SDLRVL-----SGSISERIVD------CIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 49 LVN----------ILATTVDPDAAS 63
L + I+A T+D +
Sbjct: 515 LTHRNKDGTGVRVIVAGTLDINPDD 539
>2w8a_A Glycine betaine transporter BETP; chemosensor and osmosensor,
trimer, membrane, cell membrane, membrane protein; 3.35A
{Corynebacterium glutamicum} PDB: 2wit_A
Length = 566
Score = 29.2 bits (65), Expect = 1.0
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 86 WIFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSALIGLSLSSFFLVYTSKSIVQTFFIT 145
W IF + N A + +F L AL G + + ++ TFFIT
Sbjct: 383 WFSIFGGTAIVFEQNGESIWGDGAAEEQLFGLLHALPGGQIMGIIAMI----LLGTFFIT 438
Query: 146 AASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLLSLVNLFM 187
+A S + + L + L L
Sbjct: 439 SADSASTVMGTMSQHGQLEANKWVTAAWGVATAAIGLTLLLS 480
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.3
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 229 ERQSV--IGA-LMLYMD 242
E+Q++ + A L LY D
Sbjct: 18 EKQALKKLQASLKLYAD 34
>2fuv_A Phosphoglucomutase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, isomerase; HET: MSE; 2.00A {Salmonella typhimurium
LT2}
Length = 549
Score = 27.8 bits (60), Expect = 2.8
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 13 SGSGFGSTIDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIII 66
++ + L A + V G T +S + + P A I+I
Sbjct: 93 LSEPAFISVLEVLAANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVI 146
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding,
structural genomics, NPPSFA; 2.52A {Thermus thermophilus
HB8}
Length = 524
Score = 27.4 bits (59), Expect = 3.0
Identities = 7/54 (12%), Positives = 16/54 (29%)
Query: 13 SGSGFGSTIDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIII 66
+T A+ I V T ++S + + A +++
Sbjct: 74 LSEPAWATALSVFAAHGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADGVLL 127
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 27.3 bits (61), Expect = 3.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 132 VYTSKSIVQTFFITAASFGSLS 153
V + +I + F S G+LS
Sbjct: 843 VESITAIRKRFITPGMSMGALS 864
>3pmg_A Alpha-D-glucose-1,6-bisphosphate; phosphoglucomutase; HET: SEP;
2.40A {Oryctolagus cuniculus} SCOP: c.84.1.1 c.84.1.1
c.84.1.1 d.129.2.1 PDB: 1c4g_A* 1jdy_A* 1lxt_A 1vkl_A*
1c47_A*
Length = 561
Score = 26.6 bits (57), Expect = 6.8
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 11/62 (17%)
Query: 13 SGSGFGSTIDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIIINRGVML 72
I + A I + G+ T +S ++ + A G++L
Sbjct: 65 YMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKI------KAIG-----GIIL 113
Query: 73 TG 74
T
Sbjct: 114 TA 115
>1kfi_A Phosphoglucomutase 1; parafusin, phosphoprotein PP63, exocytosis,
isomerase; 2.40A {Paramecium tetraurelia} SCOP: c.84.1.1
c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1kfq_A
Length = 572
Score = 26.5 bits (57), Expect = 7.0
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 13 SGSGFGSTIDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPDAASIII 66
+I + A I ++ GL T S + + V II+
Sbjct: 70 FNRQAIFSIIRLAYANDISEVHVGQAGLMSTPASSHYIRKVNEEVGNCIGGIIL 123
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
binding protein, calcium, calcium/phospholipid-binding;
1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
1i4a_A 1aow_A
Length = 322
Score = 26.0 bits (57), Expect = 8.7
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 14/69 (20%)
Query: 192 IDLTMSAMG------LVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGAL--MLYMDF 243
+ M G + I ++ + ++I + Y +Y +S+ + F
Sbjct: 98 LRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYG------RSLEEDICSDTSFMF 151
Query: 244 IQIFVHLLR 252
++ V L
Sbjct: 152 QRVLVSLTA 160
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 25.7 bits (56), Expect = 9.4
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 220 SDRYDVAYAERQSVIGALMLYMDFIQIFVHLLRFLG 255
+ + + +Y + V G D I+ +G
Sbjct: 47 AKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRMG 82
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.331 0.142 0.405
Gapped
Lambda K H
0.267 0.0409 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,050,296
Number of extensions: 88344
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 25
Length of query: 259
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 169
Effective length of database: 3,511,270
Effective search space: 593404630
Effective search space used: 593404630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)