BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780452|ref|YP_003064865.1| hypothetical protein CLIBASIA_01685 [Candidatus Liberibacter asiaticus str. psy62] (259 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780452|ref|YP_003064865.1| hypothetical protein CLIBASIA_01685 [Candidatus Liberibacter asiaticus str. psy62] Length = 259 Score = 510 bits (1313), Expect = e-146, Method: Compositional matrix adjust. Identities = 259/259 (100%), Positives = 259/259 (100%) Query: 1 MSDIRNYQRVVNSGSGFGSTIDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPD 60 MSDIRNYQRVVNSGSGFGSTIDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPD Sbjct: 1 MSDIRNYQRVVNSGSGFGSTIDQGLRAYMIRVYNLMALGLGVTGIMSFLVNILATTVDPD 60 Query: 61 AASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSA 120 AASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSA Sbjct: 61 AASIIINRGVMLTGFGALMYTSPLRWIFIFAPLGVFIFLNVRLHSLSAYAAKMMFLLYSA 120 Query: 121 LIGLSLSSFFLVYTSKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLL 180 LIGLSLSSFFLVYTSKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLL Sbjct: 121 LIGLSLSSFFLVYTSKSIVQTFFITAASFGSLSLYGYTTKRDLGPIGSFMIMGAFGLFLL 180 Query: 181 SLVNLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLY 240 SLVNLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLY Sbjct: 181 SLVNLFMRSSAIDLTMSAMGLVIFSALTAYDTQKIKEAYSDRYDVAYAERQSVIGALMLY 240 Query: 241 MDFIQIFVHLLRFLGSRRD 259 MDFIQIFVHLLRFLGSRRD Sbjct: 241 MDFIQIFVHLLRFLGSRRD 259 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 22.7 bits (47), Expect = 6.9, Method: Composition-based stats. Identities = 10/16 (62%), Positives = 13/16 (81%) Query: 49 LVNILATTVDPDAASI 64 L+N +ATT D DAA+I Sbjct: 284 LINRVATTYDCDAANI 299 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.331 0.142 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 145,910 Number of Sequences: 1233 Number of extensions: 5576 Number of successful extensions: 25 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 13 length of query: 259 length of database: 328,796 effective HSP length: 72 effective length of query: 187 effective length of database: 240,020 effective search space: 44883740 effective search space used: 44883740 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 37 (18.9 bits)