HHsearch alignment for GI: 254780453 and conserved domain: COG0159
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism].
Probab=95.29 E-value=0.27 Score=28.75 Aligned_cols=201 Identities=16% Similarity=0.221 Sum_probs=104.4
Q ss_pred EEEECCCHHHHHHHHHH-HCCCCCEEEECHHHHH--CCCHHH----HHHHHH-----HCHHHHHHH--HHCCHH------
Q ss_conf 99607998999999997-3885228998689984--255899----999985-----154667877--640424------
Q gi|254780453|r 17 VGLDLPTVKEAERIVSI-LSDTVSFYKIGYHLSF--SGGLEL----ARDLIS-----DGKSVFLDM--KLFDIG------ 76 (238)
Q Consensus 17 vALD~~~~~e~l~l~~~-l~~~i~~iKig~~l~~--~~G~~~----i~~l~k-----~~~~If~D~--K~~DIp------ 76 (238)
T Consensus 23 it~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y 102 (265)
T COG0159 23 VTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTY 102 (265)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 94889998999999999986798889966888886766889999899999779988999999999986189998899870
Q ss_pred -HH-----HHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf -67-----8987765215675089972460-4677776530235531046664147776887652012104887654454
Q gi|254780453|r 77 -SS-----VTAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAV 149 (238)
Q Consensus 77 -nT-----v~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~ 149 (238)
T Consensus 103 ~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~-~rl~~i~------~~a~GFiY 175 (265)
T COG0159 103 YNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD-ERLKKIA------EAASGFIY 175 (265)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHH------HHCCCCEE
T ss_conf 1188773599999999975998798578986677789999997698679886999998-9999999------74798589
Q ss_pred HHHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC--CC
Q ss_conf 2110244311134-----1034455442024403551011357865798400369899996599899998533088--88
Q gi|254780453|r 150 QARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA--AD 222 (238)
Q Consensus 150 ~a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a--~d 222 (238)
T Consensus 176 ~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e----------~~~~v~~~-ADGVIVGSAiV~~i~~~ 243 (265)
T COG0159 176 YVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPE----------QAAQVAEA-ADGVIVGSAIVKIIEEG 243 (265)
T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCHH----------HHHHHHHH-CCEEEECHHHHHHHHHC
T ss_conf 99666666777653046999999999744-89738744869999----------99999976-88579739999999955
Q ss_pred ----HHHHHHHHHHHHHH
Q ss_conf ----89999999998665
Q gi|254780453|r 223 ----PVSAAQEFQRAISL 236 (238)
Q Consensus 223 ----P~~aa~~i~~~i~~ 236 (238)
T Consensus 244 ~~~~~~~~~~~l~~~l~~ 261 (265)
T COG0159 244 LDEEALEELRALVKELKA 261 (265)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 514469999999999998