HHsearch alignment for GI: 254780453 and conserved domain: COG0159

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism].
Probab=95.29  E-value=0.27  Score=28.75  Aligned_cols=201  Identities=16%  Similarity=0.221  Sum_probs=104.4

Q ss_pred             EEEECCCHHHHHHHHHH-HCCCCCEEEECHHHHH--CCCHHH----HHHHHH-----HCHHHHHHH--HHCCHH------
Q ss_conf             99607998999999997-3885228998689984--255899----999985-----154667877--640424------
Q gi|254780453|r   17 VGLDLPTVKEAERIVSI-LSDTVSFYKIGYHLSF--SGGLEL----ARDLIS-----DGKSVFLDM--KLFDIG------   76 (238)
Q Consensus        17 vALD~~~~~e~l~l~~~-l~~~i~~iKig~~l~~--~~G~~~----i~~l~k-----~~~~If~D~--K~~DIp------   76 (238)
T Consensus        23 it~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y  102 (265)
T COG0159          23 VTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTY  102 (265)
T ss_pred             EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             94889998999999999986798889966888886766889999899999779988999999999986189998899870


Q ss_pred             -HH-----HHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             -67-----8987765215675089972460-4677776530235531046664147776887652012104887654454
Q gi|254780453|r   77 -SS-----VTAAIEHIANMGVAMLTVHAYP-QTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAV  149 (238)
Q Consensus        77 -nT-----v~~~v~~~~~~g~d~iTvH~~~-~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~  149 (238)
T Consensus       103 ~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~-~rl~~i~------~~a~GFiY  175 (265)
T COG0159         103 YNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPD-ERLKKIA------EAASGFIY  175 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCH-HHHHHHH------HHCCCCEE
T ss_conf             1188773599999999975998798578986677789999997698679886999998-9999999------74798589


Q ss_pred             HHHHCCCCCCCCC-----CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC--CC
Q ss_conf             2110244311134-----1034455442024403551011357865798400369899996599899998533088--88
Q gi|254780453|r  150 QARDIGMGGIVCS-----PQEVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA--AD  222 (238)
Q Consensus       150 ~a~~~g~~GvV~s-----~~ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a--~d  222 (238)
T Consensus       176 ~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e----------~~~~v~~~-ADGVIVGSAiV~~i~~~  243 (265)
T COG0159         176 YVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPE----------QAAQVAEA-ADGVIVGSAIVKIIEEG  243 (265)
T ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCHH----------HHHHHHHH-CCEEEECHHHHHHHHHC
T ss_conf             99666666777653046999999999744-89738744869999----------99999976-88579739999999955


Q ss_pred             ----HHHHHHHHHHHHHH
Q ss_conf             ----89999999998665
Q gi|254780453|r  223 ----PVSAAQEFQRAISL  236 (238)
Q Consensus       223 ----P~~aa~~i~~~i~~  236 (238)
T Consensus       244 ~~~~~~~~~~~l~~~l~~  261 (265)
T COG0159         244 LDEEALEELRALVKELKA  261 (265)
T ss_pred             CCHHHHHHHHHHHHHHHH
T ss_conf             514469999999999998