HHsearch alignment for GI: 254780453 and conserved domain: cd02809
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=95.85 E-value=0.026 Score=35.39 Aligned_cols=79 Identities=27% Similarity=0.433 Sum_probs=50.7
Q ss_pred HHHHHHHCCCCCCCCCCH-------------HHHHHHHHHCCCCE-EEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEE
Q ss_conf 454211024431113410-------------34455442024403-5510113578657984003698999965998999
Q gi|254780453|r 147 RAVQARDIGMGGIVCSPQ-------------EVRMVREIVGHNMV-IVTPGIRMLGSATDGQKRFATPETALKYGASHIV 212 (238)
Q Consensus 147 ~a~~a~~~g~~GvV~s~~-------------ei~~ir~~~~~~~~-~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iV 212 (238)
T Consensus 185 DA~~a~~~G~dgI~VSNHGGRqlD~~p~~i~~L~~i~~~v~~~~~v~~DgGvR~-G~D---------v~KAlaLGA~~V~ 254 (299)
T cd02809 185 DALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRR-GTD---------VLKALALGADAVL 254 (299)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC-HHH---------HHHHHHCCCCEEE
T ss_conf 999999859988997288733368887789999999998546728997188475-368---------9999976998898
Q ss_pred ECCHHCCC--CC----HHHHHHHHHHHHH
Q ss_conf 98533088--88----8999999999866
Q gi|254780453|r 213 VSRPIVRA--AD----PVSAAQEFQRAIS 235 (238)
Q Consensus 213 VGR~I~~a--~d----P~~aa~~i~~~i~ 235 (238)
T Consensus 255 iGRp~l~~l~~~G~~Gv~~~~~~l~~El~ 283 (299)
T cd02809 255 IGRPFLYGLAAGGEAGVAHVLEILRDELE 283 (299)
T ss_pred ECHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 77899999885449999999999999999