HHsearch alignment for GI: 254780453 and conserved domain: cd02811
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.30 E-value=0.067 Score=32.71 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=47.5
Q ss_pred HHHHHHHHCCCCCCCCCCH---------------------------------HHHHHHHHHCCCCEEEEECCCCCCCCCC
Q ss_conf 4454211024431113410---------------------------------3445544202440355101135786579
Q gi|254780453|r 146 MRAVQARDIGMGGIVCSPQ---------------------------------EVRMVREIVGHNMVIVTPGIRMLGSATD 192 (238)
Q Consensus 146 ~~a~~a~~~g~~GvV~s~~---------------------------------ei~~ir~~~~~~~~~itPGI~~~~~~~~ 192 (238)
T Consensus 193 eda~~l~~~Gv~~IdVSghGGTnf~~IE~~R~~d~~~~~~~~l~dwGi~T~~sL~e~~~~~~~~~iiasGGir~-g~D-- 269 (326)
T cd02811 193 ETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRN-GLD-- 269 (326)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCC-HHH--
T ss_conf 99999996799999978999975366531015673133788988628556999999997389981998688787-799--
Q ss_pred CCCEECCHHHHHHCCCCEEEECCHHCCC-----CCHHHHHHHHHHHHHH
Q ss_conf 8400369899996599899998533088-----8889999999998665
Q gi|254780453|r 193 GQKRFATPETALKYGASHIVVSRPIVRA-----ADPVSAAQEFQRAISL 236 (238)
Q Consensus 193 dq~r~~tp~~Ai~~GaD~iVVGR~I~~a-----~dP~~aa~~i~~~i~~ 236 (238)
T Consensus 270 -------v~KalaLGA~~vgiar~~L~~~~~G~~~v~~~l~~~~~el~~ 311 (326)
T cd02811 270 -------IAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELRT 311 (326)
T ss_pred -------HHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf -------999999555336527999999854899999999999999999