HHsearch alignment for GI: 254780453 and conserved domain: cd04730

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.53  E-value=0.33  Score=28.24  Aligned_cols=107  Identities=24%  Similarity=0.281  Sum_probs=65.2

Q ss_pred             HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             98776521567508997246046777765302355310466641477768876520121048876544542110244311
Q gi|254780453|r   80 TAAIEHIANMGVAMLTVHAYPQTMRSAVSVVRDTGICLLAVTVLTSMDDFDLRESGYEKDISDMVRMRAVQARDIGMGGI  159 (238)
Q Consensus        80 ~~~v~~~~~~g~d~iTvH~~~~~l~~~~~~~~~~~~~il~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~a~~a~~~g~~Gv  159 (238)
T Consensus        70 ~~~~~~~~~~~v~~v~~~~g~p--~~~v~~l~~~g~~v~~~--v~s~-------------------~~A~~a~~~GaD~i  126 (236)
T cd04730          70 EALLEVALEEGVPVVSFSFGPP--AEVVERLKAAGIKVIPT--VTSV-------------------EEARKAEAAGADAL  126 (236)
T ss_pred             HHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHCCCEEEEE--CCCH-------------------HHHHHHHHCCCCEE
T ss_conf             9999999976999999879897--89999999829989995--8989-------------------99999998189989


Q ss_pred             CCCCH---------------HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECCHHHHHHCCCCEEEECCHHCCC
Q ss_conf             13410---------------34455442024403551011357865798400369899996599899998533088
Q gi|254780453|r  160 VCSPQ---------------EVRMVREIVGHNMVIVTPGIRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRA  220 (238)
Q Consensus       160 V~s~~---------------ei~~ir~~~~~~~~~itPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iVVGR~I~~a  220 (238)
T Consensus       127 v~qG~eAGGH~g~~~~~~~~lv~~v~~~~-~ipviaAGGI~~g~----------~i~aal~lGA~gV~~GTrfl~t  191 (236)
T cd04730         127 VAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGR----------GIAAALALGADGVQMGTRFLAT  191 (236)
T ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHHH-CCCEEEECCCCCHH----------HHHHHHHHCCCEEEECCHHHHC
T ss_conf             99777777788987555677999999982-98689654627789----------9999998089799955385708