HHsearch alignment for GI: 254780454 and conserved domain: COG0592
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=498.68 Aligned_cols=363 Identities=35% Similarity=0.603 Sum_probs=339.5
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEEECCCCEEEEEHHHHHHHHHC
Q ss_conf 95898599999999987502037888610133899998997999996782899999977752680799949987788740
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~i~~~G~~~v~a~~l~~iik~ 80 (385)
T Consensus 1 mk~~i~r~~l~~~l~~~~~~v~~r~~~pil~~vli~~~~~~l~~~~td~ei~~~~~i~~~v~~~g~~~v~~k~l~dii~~ 80 (364)
T COG0592 1 MKFSIERENLLKALQLVSRIVESRPTIPILSNVLIEAKENGLTLTGTDLEISLEARIPAEVEAEGEVAVPAKKLLDIISK 80 (364)
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEECCEEEEEEECCCEEEEEEEEEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 98999889999999999866168999745605799997882799995552589999878999976014448999999985
Q ss_pred CCCCCCEEEEEECCCCEE-EEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf 777773047773367508-9998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r 81 LQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 (385)
Q Consensus 81 L~~~~~i~~~~~~~~~~~-i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G 159 (385)
T Consensus 81 L~de~~~~~~~~---~~~~~~i~~~~s~f~l~~lp~e~Fp~~~~~~~~~~~~l~~~~Lk~ii~~~~fa~~~~e~~~~lng 157 (364)
T COG0592 81 LPDEAVFLVTED---GISLLAVDSGKSAFVLLTLPAEDFPEYPVDEEEVEFGLPTELLKKIIKRTKFADSLLETRYELNG 157 (364)
T ss_pred CCCCCEEEEECC---CCEEEEECCCCEEEEECCCCHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 885205999627---83079982683599965889799877568877517885299999999987765655533532646
Q ss_pred EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEE
Q ss_conf 66776178734899985341576666435787533100000100012222102776464331334553010025069998
Q gi|254780454|r 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 (385)
Q Consensus 160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~s 239 (385)
T Consensus 158 v~~~i~~~--~l~~vatd~~rla~~~~~~~~~~~~-~~viIp~k~l~el~k~~~d~~--~~~~~~sd~i~f~~~~~~~~s 232 (364)
T COG0592 158 VLLEIEGT--KLRLVATDGHRLAVEELEIPELEED-ASVIIPAKTLKELIKLLKDAD--VEIFLVSDQIRFKAGETILFS 232 (364)
T ss_pred EEEEEECC--EEEEEECCCCEEEEEECCCCCCCCC-EEEEEEHHHHHHHHHHCCCCC--CEEEECCCEEEEEECCEEEEE
T ss_conf 99999688--8999983884578872467766788-389998799999986421566--317861787999988879999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCC
Q ss_conf 51266553221013555661799848998888988741012355530256517659999807873268999998962884
Q gi|254780454|r 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 (385)
Q Consensus 240 rLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~ 319 (385)
T Consensus 233 ~lieG~fpd~~~vip~~~~~~~~l~~~el~~al~r~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~g~~~eei~~~~~g~~ 312 (364)
T COG0592 233 KLIEGEFPDYERVIPKEFEKELTLDRLELKEALKRVYSLSYLKDRGKKLSLADGEVKLSLGNDEPGKAEEEIDVGYTGEE 312 (364)
T ss_pred EEEECCCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCEEEEEEEECCCCCCE
T ss_conf 99854877358845787773067608888879998777886534613665047519999769985279999962667851
Q ss_pred EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 399963889988987357533466338999658987589943776544455566763799832129
Q gi|254780454|r 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385)
T Consensus 313 ~~I~fn~~ylld~l~~~~~-----~~v~~~~~~~~~p~~i~~~~~---------~~~~~~imP~r~ 364 (364)
T COG0592 313 LKIGFNLAYLLDVLKALDS-----EEVQFGFNDSSSPFLIRPEEN---------DDFKYLIMPMRL 364 (364)
T ss_pred EEEEEEHHHHHHHHCCCCC-----CEEEEEECCCCCCEEEEECCC---------CCCEEEEEECCC
T ss_conf 7999970585556504788-----759999768998689971788---------882599987049