HHsearch alignment for GI: 254780454 and conserved domain: PRK06673
>PRK06673 DNA polymerase III subunit beta; Validated.
Probab=100.00 E-value=0 Score=603.36 Aligned_cols=362 Identities=25% Similarity=0.454 Sum_probs=330.8
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEEECC--------CCEEEEEHH
Q ss_conf 958985999999999875020378886101338999989979999967828999999777526--------807999499
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV--------CGSITVSAH 72 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~i~~--------~G~~~v~a~ 72 (385)
T Consensus 1 Mkf~i~k~~L~~~l~~v~~~i~~k~~~piL~~ili~a~~~~l~l~atD~ei~i~~~i~~~v~~~~~~~i~~~G~~~v~ak 80 (376)
T PRK06673 1 MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSAIDDEQITTILQAGTIVVPAK 80 (376)
T ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEEEEEEECCCEEECCCCEEEEEHH
T ss_conf 97999899999999998736177986478739899998996999997786399999876773022101025817999879
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCC
Q ss_conf 87788740777773047773367508999867820243036621143212332430450561135542022023002455
Q gi|254780454|r 73 LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 (385)
Q Consensus 73 ~l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~ 152 (385)
T Consensus 81 ~l~eivk~lp~~~-~~~-~~~--~~~l~i~~~~~~f~l~~~~~~dfP~~p~~~~~~~~~i~~~~l~~~i~kt~fA~s~de 156 (376)
T PRK06673 81 YFIEIIKKMPSDI-VIK-SKN--EQTITIQSGEITLNLNGFPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNE 156 (376)
T ss_pred HHHHHHHHCCCCC-EEE-ECC--CCEEEEEECCEEEECCCCCHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCC
T ss_conf 9999997489865-599-727--988999978789982687968854566667773599859999999997673553656
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 65210116677617873489998534157666643578753310000010001222210277646433133455301002
Q gi|254780454|r 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 (385)
Q Consensus 153 ~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~ 232 (385)
T Consensus 157 ~rp~l~Gv~~~~~~~--~l~~vATDg~RLa~~~~~~~~~--~~~~~iiP~k~l~el~kll~~~~e~v~i~~~~~~i~f~~ 232 (376)
T PRK06673 157 SRPVLTGVHIELDHN--KLICAATDSHRLAIRETLISTN--MKANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 (376)
T ss_pred CCHHEEEEEEECCCC--EEEEEEECCCEEEEEECCCCCC--CCCCEEECHHHHHHHHHHHCCCCCEEEEEECCCEEEEEE
T ss_conf 714422387723599--8999997584568886035888--774378328999999977405885478972561599998
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCC-CCCCCEEEE-ECCEEEEEECCCCCEEEEEE
Q ss_conf 5069998512665532210135556617998489988889887410123-555302565-17659999807873268999
Q gi|254780454|r 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL-SSDKLCMTVDNPDMGKAIES 310 (385)
Q Consensus 233 ~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~-~~~~i~l~~-~~~~l~i~~~~~e~g~~~e~ 310 (385)
T Consensus 233 ~~~~~~srLIeg~fPdy~~viP~~~~~~~~v~r~~ll~al~Rvsi~~~~~~~~~v~l~~~~~~~l~i~s~~~~~G~~~e~ 312 (376)
T PRK06673 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVNESTIQISSNASQIGKISET 312 (376)
T ss_pred CCEEEEEEECCCCCCCHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEE
T ss_conf 99899998126678877772899998699998999999999999771146688469998689859999669876661168
Q ss_pred EEEE--ECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 9989--6288439996388998898735753346633899965898758994377654445556676379983212
Q gi|254780454|r 311 MNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 (385)
Q Consensus 311 i~~~--~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvr 384 (385)
T Consensus 313 ~~~~~~~g~~~~~I~FN~~yLld~L~~i~~-----e~V~l~~~~~~~p~~i~~~~~---------~~~~ylvMPvR 374 (376)
T PRK06673 313 QQIDAIQGEKQLNISFDGRFMLDALRAIKE-----ETVTLSFSGSMRPILIEAGTQ---------SAAIHLISPVR 374 (376)
T ss_pred EEECCCCCCCCEEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEECCC
T ss_conf 885023699868999889999999855899-----979999888999789977998---------84389997031