HHsearch alignment for GI: 254780454 and conserved domain: PRK07761
>PRK07761 DNA polymerase III subunit beta; Validated.
Probab=100.00 E-value=0 Score=622.98 Aligned_cols=368 Identities=26% Similarity=0.438 Sum_probs=335.1
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEEECCCCEEEEEHHHHHHHHHC
Q ss_conf 95898599999999987502037888610133899998997999996782899999977752680799949987788740
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~i~~~G~~~v~a~~l~~iik~ 80 (385)
T Consensus 1 Mkf~i~k~~L~~~L~~v~~~v~~k~~~piL~~vliea~~~~l~l~atd~ei~i~~~i~~~i~e~G~~~vpak~l~~ivk~ 80 (376)
T PRK07761 1 MKFRVERDDLADAVAWVARSLPARPPVPVLAGVLLEADDEGLTLSGFDYEVSARVRVSAEVDEPGRVLVSGRLLADITRA 80 (376)
T ss_pred CEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEEEEECCCEEEEEEHHHHHHHHHH
T ss_conf 97999999999999999866178987288778899998999999997782799999976871571899977999999974
Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEE
Q ss_conf 77777304777336750899986782024303662114321233243045056113554202202300245565210116
Q gi|254780454|r 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160 (385)
Q Consensus 81 L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv 160 (385)
T Consensus 81 lp~~~-I~l~~e---~~~l~I~~g~~~f~l~~~~~~dfP~~~~~~~~-~~~i~~~~l~~~i~~t~fa~s~~e~r~~L~Gv 155 (376)
T PRK07761 81 LPNKP-VEFSVD---GSRVTLTCGSARFTLPTMPVEDYPTLPQLPEE-TGTVPAELFAEAVSQVAVAAGRDDTLPMLTGI 155 (376)
T ss_pred CCCCC-EEEEEC---CCEEEEEECCEEEEEECCCHHHCCCCCCCCCC-CEEECHHHHHHHHHHEEEEECCCCCHHHHCCE
T ss_conf 77763-279971---99999998977999634686878666788763-15898999999984375873174784773738
Q ss_pred EEEECCCCCEEEEEEECCEEEEEEEEECCCCC-CCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCC-----CCCEEEECCE
Q ss_conf 67761787348999853415766664357875-33100000100012222102776464331334-----5530100250
Q gi|254780454|r 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 (385)
Q Consensus 161 ~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~-~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~-----~~~i~~~~~~ 234 (385)
T Consensus 156 ~~~~~~~--~l~~vATDghRLa~~~~~~~~~~~~~~~~~iIP~k~l~el~k~l~~-~~~v~l~~~~~~~~~~~i~f~~~~ 232 (376)
T PRK07761 156 RLEIEGE--TVVLAATDRFRLAVRELTWSPGSPDIDAAALVPAKTLAEAAKALTL-GSEVRLALGTGDSVEGLLGFEGDG 232 (376)
T ss_pred EEEEECC--EEEEEEECCCCEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHCCC-CCCEEEEEECCCCCCEEEEEEECC
T ss_conf 9998499--8999997532101366324666777654357108999999975388-984899996686641279999899
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEE
Q ss_conf 69998512665532210135556617998489988889887410123555302565176599998078732689999989
Q gi|254780454|r 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY 314 (385)
Q Consensus 235 ~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~ 314 (385)
T Consensus 233 ~~~~srLieg~fPdy~~viP~~~~~~~~v~r~~l~~al~Rvsl~s~-~~~~v~l~~~~~~l~lss~~~e~g~a~E~i~~~ 311 (376)
T PRK07761 233 RRTTTRLLDGEFPKVRQLFPTEHTAVATVEVAELIEAIKRVALVAE-RNAPVRMEFSDGTVTLSAGGDDVAQAEEDLDAA 311 (376)
T ss_pred EEEEEEECCCCCCCHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHC-CCCCEEEEECCCCEEEEECCCCCCEEEEEEEEE
T ss_conf 9999980377898525117899980899840888889877521214-897279998599159996698764278999879
Q ss_pred ECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 62884399963889988987357533466338999658987589943776544455566763799832129
Q gi|254780454|r 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 315 ~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385)
T Consensus 312 ~~Ge~~~I~FN~~yL~d~L~~i~~-----e~V~l~~~~~~~p~~i~p~~~~~---~~~~~~~~yviMP~rl 374 (376)
T PRK07761 312 LTGEPLTIAFNPTYLLDGLSALHS-----ERVRFGFTTPSKPALLTPAPEDD---PAPDTDYRYLLMPVRL 374 (376)
T ss_pred EECCCEEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCCCC---CCCCCCEEEEEECEEC
T ss_conf 708867999989999999850899-----87999987899988998077655---5666660699954143