HHsearch alignment for GI: 254780454 and conserved domain: TIGR00663
>TIGR00663 dnan DNA polymerase III, beta subunit; InterPro: IPR001001 Describes the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=98.43 E-value=2.7e-05 Score=51.09 Aligned_cols=208 Identities=14% Similarity=0.232 Sum_probs=102.6
Q ss_pred EECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEEC-CCCCCCCCHHCCCCCHHHHH
Q ss_conf 50561135542022023002455652101166776178734899985341576666435-78753310000010001222
Q gi|254780454|r 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEI 208 (385)
Q Consensus 130 ~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~-~~~~~~~~~~iiP~k~l~el 208 (385)
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (406)
T TIGR00663 3 FSIEKDDLLKELSKVSRVLSNRPTIPILSNVLLEVEDDKNYLTLTGTDLDISLESSIPGETVSSEQPGSVTIPAKKFLDI 82 (406)
T ss_pred EEEEHHHHHHHHHHHHHHHCCCCCCCHHCCEEEEEECCCCEEEEEEECCEEEEEEEECCCEEEEECCCEEEEECHHHHHH
T ss_conf 77401245678999988650576640011327899747757999850540468887515401231165389703255677
Q ss_pred HHHCC-CCCCCCCCCCCCCC-----EEEECCEEE--EEEEEC-CCCCCCCCCCCC-CCCCCEEEEEHHHHHHHHHHHHHC
Q ss_conf 21027-76464331334553-----010025069--998512-665532210135-556617998489988889887410
Q gi|254780454|r 209 LRILS-SKDSSVKVSLSESR-----IHLNIESLS--MSVRLI-DGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIM 278 (385)
Q Consensus 209 ~k~l~-~~~~~v~i~~~~~~-----i~~~~~~~~--~~srLi-~g~yPdy~~vip-~~~~~~~~v~r~~l~~al~Rv~i~ 278 (385)
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~f~ 162 (406)
T TIGR00663 83 VRALPDDGDSEIELEVDNDKGDSHLLLITSGKSRDDFKLPTLDADEFPNLPTIEGNEDYGVSIELPSDVLKELINQTAFA 162 (406)
T ss_pred HHHCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCEEEECCCCHHHCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 76144547604899872775312433330566421122057774235567887775541113676428999876343211
Q ss_pred CCCC-----CCCCEEE---EECCEEEEEECCCCCEEEEEEEE--EE-ECCCCEEEEECHHHHHHHHHHCCC
Q ss_conf 1235-----5530256---51765999980787326899999--89-628843999638899889873575
Q gi|254780454|r 279 SSVR-----IQAVKLS---LSSDKLCMTVDNPDMGKAIESMN--VY-YNECPMDICFNYKYLLEIIDNISS 338 (385)
Q Consensus 279 ~~~~-----~~~i~l~---~~~~~l~i~~~~~e~g~~~e~i~--~~-~~G~~~~i~fN~~yl~d~L~~~~~ 338 (385)
T Consensus 163 ~~~~~~~~~l~G~~~~~d~~~~~~l~~~~td~-~rl~~~~~~~~~~~~~~~~~~~~~P~k~~~e~~~~~~~ 232 (406)
T TIGR00663 163 AGEDETRPVLNGVLIKFDEQEGDTLLLVATDG-HRLAVCELKKWLELSDEEDFSVIIPGKALLELLKLLSD 232 (406)
T ss_pred CCCCCCCHHHCCEEEEECCCCCCEEEEEEECC-CEEEEEEECCEEECCCCCCCEEEECHHHHHHHHHHHCC
T ss_conf 01232201010114663023586689996077-05777751100000342322257442688888876167