HHsearch alignment for GI: 254780454 and conserved domain: cd00140

>cd00140 beta_clamp Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds.
Probab=100.00  E-value=0  Score=626.11  Aligned_cols=364  Identities=41%  Similarity=0.673  Sum_probs=345.9

Q ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE-ECCCCEEEEEHHHHHHHHH
Q ss_conf             958985999999999875020378886101338999989979999967828999999777-5268079994998778874
Q gi|254780454|r    1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAHLLYDIVR   79 (385)
Q Consensus         1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~-i~~~G~~~v~a~~l~~iik   79 (385)
T Consensus         1 Mk~~i~k~~L~~~l~~v~~~i~~~~~~piL~~ili~~~~~~l~l~atd~e~~i~~~i~~~~v~~~G~~~v~ak~l~~ivk   80 (365)
T cd00140           1 MKFTINREALLEALQKVSRAIESRNTIPILSNVLIEASDGGLTLTATDLEISIKTTIPAEEVEEEGSVTVPAKKLLDIVR   80 (365)
T ss_pred             CEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEECCEECCCEEEEEEHHHHHHHHH
T ss_conf             98999899999999999866188986288758899998999999998886699999967265456299998899999986


Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf             07777730477733675089998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r   80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG  159 (385)
Q Consensus        80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G  159 (385)
T Consensus        81 ~lp~~-~i~l~~~~---~~l~I~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~v~~a~s~d~~r~~L~G  156 (365)
T cd00140          81 KLPDE-EVTLETEE---NRLTIKSGKSRFSLNTLPAEEFPELPEIENGSSFTIPASELKELIKKTAFAVSTDETRPILNG  156 (365)
T ss_pred             HCCCC-CEEEEEEC---CEEEEEECCEEEEEECCCHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             38886-33899979---999999898499984589688889876688718998599999999755645465566313689


Q ss_pred             EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECCEEEEEE
Q ss_conf             66776178734899985341576666435787533100000100012222102776464331334553010025069998
Q gi|254780454|r  160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV  239 (385)
Q Consensus       160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~s  239 (385)
T Consensus       157 v~~~~~~~--~l~~vATDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~~~~~~s  234 (365)
T cd00140         157 VLLEIEDN--KLRAVATDGHRLALREIELESGAEEDFNVIVPRKTLNELLKLLEDDDEEVEISISENQILFKLGNTTFTS  234 (365)
T ss_pred             EEEEEECC--EEEEEEECCCEEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCEEEEE
T ss_conf             99999799--8999996414104698425777776516998699999999862568872899985877999989999999


Q ss_pred             EECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCC
Q ss_conf             51266553221013555661799848998888988741012355530256517659999807873268999998962884
Q gi|254780454|r  240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP  319 (385)
Q Consensus       240 rLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~  319 (385)
T Consensus       235 rlieg~yP~y~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~v~l~~~~~~l~iss~~~e~g~~~e~i~~~~~G~~  314 (365)
T cd00140         235 RLIEGEFPDYERVIPKEFEKSLTVDREELLEALKRVSLLSNEKNRGVKLEISEGQLKLSANNPEIGEAEEELEVEYEGEE  314 (365)
T ss_pred             EECCCCCCCHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf             86177999756508998984899638999999987713503788439999649979999868886069999998850886


Q ss_pred             EEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf             39996388998898735753346633899965898758994377654445556676379983212
Q gi|254780454|r  320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR  384 (385)
Q Consensus       320 ~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMPvr  384 (385)
T Consensus       315 ~~i~fN~~yL~d~L~~~~~-----~~v~l~~~~~~~p~~i~~~~~---------~~~~~liMP~r  365 (365)
T cd00140         315 LEIGFNPKYLLDALKAIDS-----EEVRLSFTDSNSPVLITPEDD---------DNFLYLIMPVR  365 (365)
T ss_pred             EEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------CCEEEEEEECC
T ss_conf             7999989999999851899-----879999868999789984899---------96689998139