HHsearch alignment of GI: 254780454 and MMDB domain: 1plq_A_
>1plq_A (A:) Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity factor; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-41 Score=268.29 Aligned_cols=233 Identities=18% Similarity=0.163 Sum_probs=202.2
Q ss_pred HHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHHH
Q ss_conf 554202202300245565210116677617873489998534157666643578753------31000001000122221
Q gi|254780454|r 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILR 210 (385)
Q Consensus 137 l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~k 210 (385)
+.++++++.||++.|+.|++|+||+|++.++ .|.++||||||||.....++.... ...+++||.|.+.++.|
T Consensus 3 ~~~~i~~~~~a~~~~~~~~il~gv~~~~~~~--~l~~~atD~~rla~~~~~l~~~~~~~~~~~~~~~~~i~~k~l~~i~k 80 (258)
T 1plq_A 3 EAKFEEASLFKRIIDGFKDCVQLVNFQCKED--GIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILR 80 (258)
T ss_dssp EEEESSHHHHHHHHHHHTTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHHHHTT
T ss_pred EEEECCHHHHHHHHHHHHHHHCEEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf 9997667999999999998766299999189--78999998986899999989798863115753586570999999986
Q ss_pred HCCCC-CCCCCCCCCCCCEEEEC------CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCC--
Q ss_conf 02776-46433133455301002------5069998512665532210135556617998489988889887410123--
Q gi|254780454|r 211 ILSSK-DSSVKVSLSESRIHLNI------ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-- 281 (385)
Q Consensus 211 ~l~~~-~~~v~i~~~~~~i~~~~------~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~-- 281 (385)
.+.+. ..++.+..+++++.|.. ...++.++|++|.||||+.+ |.+++.++++++.+|.++++|++++++.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~p~~~~~-~~~~~~~i~i~~~~l~~~l~r~~~~~~~~~ 159 (258)
T 1plq_A 81 CGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIE-ELQYDSTLSLPSSEFSKIVRDLSQLSDSIN 159 (258)
T ss_dssp CSTTTSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCCCCCCCCCC-CSCCSEEEEEEHHHHHHHHHHHHTTCSEEE
T ss_pred HCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCC-CCCCCEEEEEEHHHHHHHHHHHHHCCCEEE
T ss_conf 3368855999995478717999953887737999850356651123689-767646899629999999998870298699
Q ss_pred -----CCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC
Q ss_conf -----555302565176599998078732689999989628843999638899889873575334663389996589875
Q gi|254780454|r 282 -----RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 (385)
Q Consensus 282 -----~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p 356 (385)
+...+.++++++.+.+++.+.+.|++.|.+++.+.|++++++||++||+|+|++++++ +.|.+.+.++..|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~~~g~~~~i~fn~kyL~~~lk~~~~~----~~v~i~~~~~~~~ 235 (258)
T 1plq_A 160 IMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLS----DRVGIRLSSEAPA 235 (258)
T ss_dssp EEEETTEEEEEEECSSCEEEEEECCBCCTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGTC----SEEEEEECSSSCE
T ss_pred EEECCCEEEEEEEECCCEEEEEEECCCCCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHCCCC----CEEEEEEECCCCE
T ss_conf 998597789999703752799992145666743213552277312699289999998455589----8799998099759
Q ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 89943776544455566763799832129
Q gi|254780454|r 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 357 ~~i~~~~~~~~~~~~~~~~~~~liMPvri 385 (385)
+++.+.++ .++.|+|||+|+
T Consensus 236 ~i~~~~~~---------~~~~~~imP~~~ 255 (258)
T 1plq_A 236 LFQFDLKS---------GFLQFFLAPKFN 255 (258)
T ss_dssp EEEEEETT---------EEEEEEECCCSS
T ss_pred EEEEEECC---------EEEEEEECCCCC
T ss_conf 99999798---------699999956777