HHsearch alignment of GI: 254780454 and MMDB domain: 1rwz_A_
>1rwz_A (A:) DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.5e-44 Score=287.47 Aligned_cols=232 Identities=18% Similarity=0.168 Sum_probs=205.3
Q ss_pred HHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHHH
Q ss_conf 554202202300245565210116677617873489998534157666643578753------31000001000122221
Q gi|254780454|r 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILR 210 (385)
Q Consensus 137 l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~k 210 (385)
|+++|++|.||++.|+.||+|+||+|+++++ .|.++||||||||+.+++++.... .+.+++||.|.+.++.|
T Consensus 2 l~~~i~~v~~a~~~~~~~~~l~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~~~~~~~~~~~~~~ip~k~l~~i~k 79 (245)
T 1rwz_A 2 IDVIMTGELLKTVTRAIVALVSEARIHFLEK--GLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISK 79 (245)
T ss_dssp EEEEEEHHHHHHHHHHHHTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHT
T ss_pred EEEEECHHHHHHHHHHHHHHHCEEEEEEECC--EEEEEEECCCCEEEEEEEECHHHCEEECCCCCCEEEEEHHHHHHHHH
T ss_conf 4778428899999999999862389999088--36999998874899999978566713224788367889899999987
Q ss_pred HCCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 027764643313345530100250699985126655322101355-5661799848998888988741012355530256
Q gi|254780454|r 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 (385)
Q Consensus 211 ~l~~~~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~ 289 (385)
++.+.++.+.+..+++++.|.+++.++++||++|.||||+.++|+ ++.+++++++.+|.++++|++.+++. +.++
T Consensus 80 ~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~l~~~~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~r~~~~~~~----v~l~ 155 (245)
T 1rwz_A 80 SISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQ----VIFR 155 (245)
T ss_dssp TSCTTSEEEEEESSSSEEEEEETTEEEEEECBCGGGSCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCSE----EEEE
T ss_pred HCCCCCEEEEEECCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCE----EEEE
T ss_conf 436881699998379813999975001234123111324679998666679970399999999877334877----9999
Q ss_pred EECCEEEEEECCCCCEEEE---EEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCC
Q ss_conf 5176599998078732689---9999896288439996388998898735753346633899965898758994377654
Q gi|254780454|r 290 LSSDKLCMTVDNPDMGKAI---ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 (385)
Q Consensus 290 ~~~~~l~i~~~~~e~g~~~---e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~ 366 (385)
++++++++++.+.+..... +.+.+.+.|++++++||++||+++++++++ +++++.+.++.+|++|++..++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~n~~yL~~~l~~~~~-----~~~~~~~~~~~~p~~i~~~~~~- 229 (245)
T 1rwz_A 156 SDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGS-----GDLLTIHLGTNYPVRLVFELVG- 229 (245)
T ss_dssp EETTEEEEEEECSSCEEEEEECGGGSSEECCCCEEEEEEHHHHHHHGGGCCT-----TCEEEEEECSSSCEEEEEEETT-
T ss_pred ECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCCCEEEHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEEECC-
T ss_conf 8276799999876625999846874102137755428738999988604258-----9869999729988899999768-
Q ss_pred CCCCCCCCCEEEEEEEEEC
Q ss_conf 4455566763799832129
Q gi|254780454|r 367 KNNKDNKVNAFYVLMPMRI 385 (385)
Q Consensus 367 ~~~~~~~~~~~~liMPvri 385 (385)
++..|.|+|||+|.
T Consensus 230 -----~~~~~~~~imP~~~ 243 (245)
T 1rwz_A 230 -----GRAKVEYILAPRIE 243 (245)
T ss_dssp -----TTEEEEEEECCBCC
T ss_pred -----CCEEEEEEECCCCC
T ss_conf -----95899999887567