HHsearch alignment of GI: 254780454 and MMDB domain: 1u7b_A_
>1u7b_A (A:) PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens}
Probab=99.98 E-value=2.5e-31 Score=208.69 Aligned_cols=230 Identities=10% Similarity=0.087 Sum_probs=191.0
Q ss_pred HHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCC------CCCHHCCCCCHHHHHHHHC
Q ss_conf 4202202300245565210116677617873489998534157666643578753------3100000100012222102
Q gi|254780454|r 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILRIL 212 (385)
Q Consensus 139 ~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~------~~~~~iiP~k~l~el~k~l 212 (385)
.+++.+.||.+.++.|++++|++|+++++ .|.++||||||+++++..++.... +...+.||.+.|.++.|.+
T Consensus 5 ~~~~~~~f~~~~~~~~~~l~~v~~~~~~~--~l~~~atD~~r~a~~~~~~~~~~f~~y~~~~~~~~~i~~~~l~~~lk~~ 82 (261)
T 1u7b_A 5 RLVQGSILKKVLEALKDLINEACWDISSS--GVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCA 82 (261)
T ss_dssp EESCTHHHHHHHHHHHTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHHHHHTTS
T ss_pred EECCHHHHHHHHHHHHHHHCEEEEEECCC--EEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHHHC
T ss_conf 97567999999999998754489998189--6799998888589999998978886545786679998889999999755
Q ss_pred CCCCCCCCCCCCCC--CEEEEC-----CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCC-----
Q ss_conf 77646433133455--301002-----506999851266553221013555661799848998888988741012-----
Q gi|254780454|r 213 SSKDSSVKVSLSES--RIHLNI-----ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS----- 280 (385)
Q Consensus 213 ~~~~~~v~i~~~~~--~i~~~~-----~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~----- 280 (385)
.++ +.+++.++++ .+.|.. +.....++++.|.||+|.+++|.+++.++.+++++|.++++|+..+++
T Consensus 83 ~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~~l~~~i~~~~~~~~~v~i~ 161 (261)
T 1u7b_A 83 GNE-DIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVIS 161 (261)
T ss_dssp CTT-CEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCCCCCCCBCCCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCC-CEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCCCHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCHHHEEE
T ss_conf 688-4499999558880799997067760478874023476200012356666799944899999999886417431786
Q ss_pred --CCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEE
Q ss_conf --355530256517659999807873268999998962884399963889988987357533466338999658987589
Q gi|254780454|r 281 --VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 (385)
Q Consensus 281 --~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~ 358 (385)
.+...+.+..+.+.+.+++.+.+.|.+.+.+++.+.|++++++||.+||+++|++++.+ ++|+++++++..|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~fn~~~l~~~l~a~~~s----~~v~i~~~~~~~~~i 237 (261)
T 1u7b_A 162 CAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLS----STVTLSMSADVPLVV 237 (261)
T ss_dssp EETTEEEEEEEETTEEEEEEECCCC----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGGC----SEEEEEECTTSCEEE
T ss_pred ECCCEEEEEEEECCCEEEEEEECCCCCCCCCCEEEEECCCCHHEEEHHHHHHHHHHHCCCC----CEEEEEEECCCCEEE
T ss_conf 0588069998613662799992367766754115750586142588189899885131589----869999809977899
Q ss_pred EECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 9437765444555667637998321
Q gi|254780454|r 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 (385)
Q Consensus 359 i~~~~~~~~~~~~~~~~~~~liMPv 383 (385)
+.+.++.. .+.|+|||+
T Consensus 238 ~~~~~~~~--------~~~~~i~P~ 254 (261)
T 1u7b_A 238 EYKIADMG--------HLKYYLAPK 254 (261)
T ss_dssp EEEETTTE--------EEEEEECCB
T ss_pred EEEECCCC--------EEEEEECCC
T ss_conf 99918984--------899999566