HHsearch alignment of GI: 254780454 and MMDB domain: 1ud9_A_
>1ud9_A (A:) DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.8e-39 Score=254.22 Aligned_cols=229 Identities=11% Similarity=0.102 Sum_probs=197.5
Q ss_pred HHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHHHHHH
Q ss_conf 55420220230024556521011667761787348999853415766664357875------331000001000122221
Q gi|254780454|r 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILR 210 (385)
Q Consensus 137 l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el~k 210 (385)
..++++++.||++.++.|++|+||+|++.++ .|.++|||||||++.+..++... .+...++||.+.+.++.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~i~k 79 (245)
T 1ud9_A 2 HIVYDDVRDLKAIIQALLKLVDEALFDIKPE--GIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLK 79 (245)
T ss_dssp EEEESCHHHHHHHHHHHHHHCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHHT
T ss_pred CEECCCHHHHHHHHHHHHHHHCEEEEEECCC--EEEEEEECCCCEEEEEEEECHHHCCCCCCCCCEEEEEEHHHHHHHHH
T ss_conf 3880488999999999998862599998089--57999997875999999988677765356776688899799888885
Q ss_pred HCCCCC-CCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 027764-643313345530100250699985126655322101355-566179984899888898874101235553025
Q gi|254780454|r 211 ILSSKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 (385)
Q Consensus 211 ~l~~~~-~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l 288 (385)
.+.+.+ ..+++..+++++.|.+++.++.+||++|.||+|+.++|+ +++.++++++.+|.++++|++.+++. +.+
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ip~~~~~~~i~i~~~~l~~~i~~~~~~~~~----i~l 155 (245)
T 1ud9_A 80 AAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVPEVNLEFDIKATINASGLKNAIGEIAEVADT----LLI 155 (245)
T ss_dssp TCCSCCCEEEEEEETTEEEEEECSSSCEEEEEECCCCCCCCCC---CCCSEEEEEEHHHHHHHHHHHHHHCSE----EEE
T ss_pred HCCCCCEEEEEECCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCE----EEE
T ss_conf 3379816999965897059999842441463144333422267877666679863299999988764555866----999
Q ss_pred EEECCEEEEEECCCCCEEEEE-----EEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCC
Q ss_conf 651765999980787326899-----999896288439996388998898735753346633899965898758994377
Q gi|254780454|r 289 SLSSDKLCMTVDNPDMGKAIE-----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 (385)
Q Consensus 289 ~~~~~~l~i~~~~~e~g~~~e-----~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~ 363 (385)
+++++.+++++.+.+.|++.+ .+++.+.|++++++||++||+++|+++++ +++.....++.+|+.+++..
T Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~yl~~~l~~~~~-----~~~v~~~~~~~~p~~i~~~~ 230 (245)
T 1ud9_A 156 SGNEEKVVVKGEGENKVEVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKL-----SDYVKVAFADQKPMQLEFNM 230 (245)
T ss_dssp EECSSEEEEEESSSSCCCEEEEGGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGG-----CSEEEEEECTTSCEEEEEEC
T ss_pred EECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEHHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEEE
T ss_conf 9806647998347742268980688843789983011124178889999844468-----98699998299889999994
Q ss_pred CCCCCCCCCCCCEEEEEEEE
Q ss_conf 65444555667637998321
Q gi|254780454|r 364 KDSKNNKDNKVNAFYVLMPM 383 (385)
Q Consensus 364 ~~~~~~~~~~~~~~~liMPv 383 (385)
+ ++..+.|+|||+
T Consensus 231 ~-------~~~~~~~~imPr 243 (245)
T 1ud9_A 231 E-------GGGKVTYLLAPK 243 (245)
T ss_dssp G-------GGCEEEEEECCB
T ss_pred C-------CCEEEEEEECCC
T ss_conf 8-------975999999125