HHsearch alignment of GI: 254780454 and MMDB domain: 1vpk_A_1-143_208-255
>1vpk_A (A:1-143,A:208-255) DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.5e-36 Score=240.46 Aligned_cols=177 Identities=24% Similarity=0.441 Sum_probs=160.0
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEE-EECCCCEEEEEHHHHHHHHH
Q ss_conf 95898599999999987502037888610133899998997999996782899999977-75268079994998778874
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVR 79 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~-~i~~~G~~~v~a~~l~~iik 79 (385)
|||+|++++|.++|+++++++++|++.|+|+|++|++++++|+++|||+++++++++++ .++++|+++|||+.|.++||
T Consensus 13 MKf~V~k~~L~~aL~~v~~ii~~k~~~piL~~IlIea~~~~L~l~ATD~ei~i~~~i~~~~iee~G~i~I~Ak~l~diIK 92 (191)
T 1vpk_A 13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAAEISGEARFVVPGDVIQKMVK 92 (191)
T ss_dssp EEEEEEHHHHHHHHHHHGGGCCCSSSCGGGGEEEEEEETTEEEEEEECSSEEEEEECCCSEEEECEEEEEEC-CHHHHHT
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEEEEEECCCEEEEEEHHHHHHHHH
T ss_conf 79999899999999998755277987478759899998999999998885599999963066045159985589776651
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEE
Q ss_conf 07777730477733675089998678202430366211432123324304505611355420220230024556521011
Q gi|254780454|r 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 (385)
Q Consensus 80 ~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~G 159 (385)
+||++ .+.+..++ +++.|++|+++|+|+++|+++||.+|+.+...++.
T Consensus 93 kLp~~-~I~l~~e~---~~l~I~sg~s~f~L~~~d~eeFP~ip~~~~~~~i~---------------------------- 140 (191)
T 1vpk_A 93 VLPDE-ITELSLEG---DALVISSGSTVFRITTMPADEFPEITPAESGITFE---------------------------- 140 (191)
T ss_dssp TCCSS-EEEEEEET---TEEEEEETTEEEEEECBCCTTSCCCCCCCSSEEEE----------------------------
T ss_pred HCCCC-CCCCCCCC---CHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEE----------------------------
T ss_conf 06643-00000342---11100036613321034444565323334305999----------------------------
Q ss_pred EEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCC-CCCCCCCCCCEEEECCEEEEE
Q ss_conf 6677617873489998534157666643578753310000010001222210277646-433133455301002506999
Q gi|254780454|r 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMS 238 (385)
Q Consensus 160 v~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~-~v~i~~~~~~i~~~~~~~~~~ 238 (385)
++.|++.|++|++.+.++ .+++.+.++++.|++++.++.
T Consensus 141 ----------------------------------------i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (191)
T 1vpk_A 141 ----------------------------------------VDTKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 180 (191)
T ss_dssp ----------------------------------------EEHHHHHHHHHHHHTCCCSEEEEEECSSEEEEECSSEEEE
T ss_pred ----------------------------------------ECHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCEEEE
T ss_conf ----------------------------------------7378999988632123433004653144419980327999
Q ss_pred EEECCCCCCCC
Q ss_conf 85126655322
Q gi|254780454|r 239 VRLIDGEFPNY 249 (385)
Q Consensus 239 srLi~g~yPdy 249 (385)
+|++||+||||
T Consensus 181 ~~~~~~~~~~~ 191 (191)
T 1vpk_A 181 MRVVDAEFPDY 191 (191)
T ss_dssp EECCSSCCCCG
T ss_pred EEECCCCCCCH
T ss_conf 86046676544