HHsearch alignment of GI: 254780454 and MMDB domain: 1vpk_A_144-207_256-378
>1vpk_A (A:144-207,A:256-378) DNA polymerase III, beta subunit; TM0262, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8}
Probab=100.00 E-value=0 Score=306.29 Aligned_cols=186 Identities=29% Similarity=0.511 Sum_probs=172.5
Q ss_pred HHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCC
Q ss_conf 13554202202300245565210116677617873489998534157666643578753310000010001222210277
Q gi|254780454|r 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214 (385)
Q Consensus 135 ~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~ 214 (385)
+.|+++|++|.||+++|+.||+|+||+|+++++ .|++|||||||||+++..+... .++++|||+|
T Consensus 1 ~~l~~~i~~~~fa~~~~~~r~~L~Gv~~~~~~~--~l~~vaTD~~Rla~~~~~~~~~--~~~~~ivp~k----------- 65 (187)
T 1vpk_A 1 SLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKN--LLRLVASDGFRLALAEEQIENE--EEASFLLSLK----------- 65 (187)
T ss_dssp HHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETT--EEEEEEECSSEEEEEEEECCCC--SCEEEEEEHG-----------
T ss_pred HHHHHHHHHHHHEECCCCCHHHCCEEEEEECCC--EEEEEECCCCEEEEEECCCCCC--CCCCCCCCHH-----------
T ss_conf 999998740010545353401104069997587--5799973760567763123443--3322357372-----------
Q ss_pred CCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEEEEECCE
Q ss_conf 64643313345530100250699985126655322101355566179984899888898874101235553025651765
Q gi|254780454|r 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 (385)
Q Consensus 215 ~~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l~~~~~~ 294 (385)
++||.+++++++++|.+|+++|+|++++++++.+.+.|+|++++
T Consensus 66 ------------------------------------rvIp~~~~~~i~i~r~~l~~al~Rv~~ls~e~~~~i~l~~~~~~ 109 (187)
T 1vpk_A 66 ------------------------------------RVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENV 109 (187)
T ss_dssp ------------------------------------GGSCSCCSEEEEEEHHHHHHHHHHHHHHHTTTTCCEEEEECSSE
T ss_pred ------------------------------------HCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf ------------------------------------22764345215640124454434422202455514678614880
Q ss_pred EEEEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 99998078732689999989628843999638899889873575334663389996589875899437765444555667
Q gi|254780454|r 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374 (385)
Q Consensus 295 l~i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~ 374 (385)
+++++.++|.|+++|+++++|+|++++|+||++||+|+|+++++ ++|+|++.++.+|++|++.++ +
T Consensus 110 l~i~~~~~e~g~a~e~i~~~~~Ge~~~I~fN~~yLldaL~~~~~-----e~V~l~~~~~~~P~~i~~~~~---------~ 175 (187)
T 1vpk_A 110 MRLVSKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQINPLDI---------S 175 (187)
T ss_dssp EEEEEEETTTEEEEEEEECEEEECCEEEEECHHHHHHHHHHCCS-----SEEEEEESCTTSCEEEEETTC---------C
T ss_pred EEEEECCCCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHCCCC-----CEEEEEECCCCCCEEEECCCC---------C
T ss_conf 47986489763168999878448877999999999999861899-----879999858998689963888---------9
Q ss_pred CEEEEEEEEEC
Q ss_conf 63799832129
Q gi|254780454|r 375 NAFYVLMPMRI 385 (385)
Q Consensus 375 ~~~~liMPvri 385 (385)
+|.||||||||
T Consensus 176 ~~~~iiMPiRi 186 (187)
T 1vpk_A 176 GYLYIVMPIRL 186 (187)
T ss_dssp SEEEEECCBCC
T ss_pred CEEEEEEEEEE
T ss_conf 54899984760