HHsearch alignment of GI: 254780454 and MMDB domain: 2avt_A_1-139_205-252
>2avt_A (A:1-139,A:205-252) DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=100.00 E-value=6.2e-40 Score=260.91 Aligned_cols=179 Identities=22% Similarity=0.365 Sum_probs=162.6
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE-------ECCCCEEEEEHHH
Q ss_conf 958985999999999875020378886101338999989979999967828999999777-------5268079994998
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVCGSITVSAHL 73 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~-------i~~~G~~~v~a~~ 73 (385)
|||+|+|+.|.++|+++++++++|++.|+|+|++|++.+++|+++|||+++++++.++++ |.++|+++|||+.
T Consensus 2 Mkf~i~k~~L~~aL~~v~~vi~~k~~~pILs~Ili~a~~~~l~ltaTD~ei~i~~~i~a~~~~~~i~i~e~G~v~v~ak~ 81 (187)
T 2avt_A 2 IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSNENAGLLITSPGAILLEASF 81 (187)
T ss_dssp CEEEEEHHHHHHHHHHHGGGCCSSCSSGGGGEEEEEEETTEEEEEEECSSEEEEEEEEC-----CEEEEECEEEEEEHHH
T ss_pred EEEEEEHHHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECCEEEEEEECCCEEEEEEEEEEECCCCCEEEECEEECCCHHH
T ss_conf 79999799999999998636088987377618899999999999998784799999984541468457303032353889
Q ss_pred HHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCC
Q ss_conf 77887407777730477733675089998678202430366211432123324304505611355420220230024556
Q gi|254780454|r 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI 153 (385)
Q Consensus 74 l~~iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~ 153 (385)
|.+++|+||++.......+ ++.+.|++|+++|+|+++|+++||.+|+.+...++.
T Consensus 82 l~~Iik~lp~~~i~i~~~e---~~~l~I~~~~s~f~L~~l~~~dFP~ipe~~~~~~~~---------------------- 136 (187)
T 2avt_A 82 FINIISSLPDISINVKEIE---QHQVVLTSGKSEITLKGKDVDQYPRLQEVSTENPLI---------------------- 136 (187)
T ss_dssp HHHHHHHCSSSEEEEEEET---TTEEEEEETTEEEEEECBCGGGSCCCCCCCCSSCEE----------------------
T ss_pred HHHHHHCCCCCCEEEEECC---CEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCC----------------------
T ss_conf 8877641254540686223---402477405406876033455675322223344201----------------------
Q ss_pred CCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCCCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 52101166776178734899985341576666435787533100000100012222102776464331334553010025
Q gi|254780454|r 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 (385)
Q Consensus 154 r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~i~~~~~ 233 (385)
+.++|++.||.|++.++++.|+++++++++.|.++
T Consensus 137 ---------------------------------------------i~~~k~~~e~~k~~~~~~~~~~~~~~~~~~~f~~~ 171 (187)
T 2avt_A 137 ---------------------------------------------LKTSKSLREFSAVFTDDIETVEVFFSPSQILFRSE 171 (187)
T ss_dssp ---------------------------------------------EEHHHHHHHHHHHSCTTCCEEEEEECSSEEEEECS
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECC
T ss_conf ---------------------------------------------13656777887652144553012226762113114
Q ss_pred EEEEEEEECCCCCCCC
Q ss_conf 0699985126655322
Q gi|254780454|r 234 SLSMSVRLIDGEFPNY 249 (385)
Q Consensus 234 ~~~~~srLi~g~yPdy 249 (385)
+..|+||||||+|||.
T Consensus 172 ~~~~~s~li~g~~pd~ 187 (187)
T 2avt_A 172 HISFYTRLLEGNYPDT 187 (187)
T ss_dssp SEEEEEECCCSCCCCC
T ss_pred CCEEEEECCCCCCEEE
T ss_conf 7189850026775047