HHsearch alignment of GI: 254780454 and MMDB domain: 3a1j_C_
>3a1j_C (C:) Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=97.91 E-value=0.00066 Score=42.30 Aligned_cols=205 Identities=12% Similarity=0.092 Sum_probs=124.0
Q ss_pred CCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCC-------CCCCCHHCCCCCHH
Q ss_conf 61135542022023002455652101166776178734899985341576666435787-------53310000010001
Q gi|254780454|r 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ-------IAKMPSIIVPRKAV 205 (385)
Q Consensus 133 ~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~-------~~~~~~~iiP~k~l 205 (385)
++..|++++....+. .=+.|++..++.++ .+.|+|- +.....++.. .++...+-|+.+.|
T Consensus 11 ~~~~~~~~~~~i~~~----------~e~~~~~~~~Gi~i--~~~~s~~-~~v~~~l~~~~F~~Y~~~~~~~~~~i~l~~l 77 (263)
T 3a1j_C 11 NVRNLSTILKAIHFR----------EHATCFATKNGIKV--TVENAKC-VQANAFIQAGIFQEFKVQEESVTFRINLTVL 77 (263)
T ss_dssp CTHHHHHHHHTTCSS----------SEEEEEEETTEEEE--EEEETTT-EEEEEEEEGGGSSEEEESSSCEEEEEEHHHH
T ss_pred CHHHHHHHHHHCCCC----------CEEEEEECCCEEEE--EEECCCE-EEEEEEECHHHCCCEEECCCCEEEEEEHHHH
T ss_conf 889999999761245----------37999995891799--9978968-9999998989898547769752899878999
Q ss_pred HHHHHHCCCCCC-CCC----CCCCC--CCEEEECC--EEE--EEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHH
Q ss_conf 222210277646-433----13345--53010025--069--9985126655322101355-566179984899888898
Q gi|254780454|r 206 GEILRILSSKDS-SVK----VSLSE--SRIHLNIE--SLS--MSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVD 273 (385)
Q Consensus 206 ~el~k~l~~~~~-~v~----i~~~~--~~i~~~~~--~~~--~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~ 273 (385)
..++|.+...+. +.. +.+.+ ..+.+..+ +.. +.-++++-..+.-- .+|+ +++.++.+.-..|.++++
T Consensus 78 ~~~Lk~~~~~d~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~i~s~~l~~~~~ 156 (263)
T 3a1j_C 78 LDCLSIFGSSPXPGTLTALRXCYQGYGYPLXLFLEEGGVVTVCKINTQEPEETLDF-DFCSTNVINKIILQSEGLREAFS 156 (263)
T ss_dssp HHHHTTTCSCCCTTCCCEEEEEECSTTCCEEEEEEETTEEEEEEECCBCCCCCCCC-CCCTTTEEEEEEEEGGGGHHHHH
T ss_pred HHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEECCCCCCCCCC-CCCCCCEEEEEEEEHHHHHHHHH
T ss_conf 99997436787656412799996599987999997089089999875587644468-99864351999998999999998
Q ss_pred HHHHCCCCCCCCCEEEEECC--EEEEEECCCCCEEEEEEEEE------E-ECCCCEEEEECHHHHHHHHHHCCCCCCCCC
Q ss_conf 87410123555302565176--59999807873268999998------9-628843999638899889873575334663
Q gi|254780454|r 274 RVSIMSSVRIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNV------Y-YNECPMDICFNYKYLLEIIDNISSDEVVDD 344 (385)
Q Consensus 274 Rv~i~~~~~~~~i~l~~~~~--~l~i~~~~~e~g~~~e~i~~------~-~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e 344 (385)
-+..+++ .+.+..+++ .+.+++.+ +.|++.-.++. . -.+++.+..|..+||..+++++... +
T Consensus 157 ~l~~~~~----~i~i~~~~~~~~l~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~~~y~~~~l~~~~ka~~~s----~ 227 (263)
T 3a1j_C 157 ELDXTSE----VLQITXSPDKPYFRLSTFG-NAGSSHLDYPKDSDLXEAFHCNQTQVNRYKISLLKPSTKALVLS----C 227 (263)
T ss_dssp TSCTTSS----EEEEEECSSSSSEEEEEEE-TTEEEEEEECTTCSSEEEEEECSCEEEEEEHHHHTTHHHHHHHC----S
T ss_pred HHHHCCC----EEEEEEECCCCEEEEEEEC-CCCEEEEECCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHCCCC----C
T ss_conf 7761598----3999997687659999975-78638884058987125532687378799789999988540559----8
Q ss_pred EEEEEECCCCCCEEEEC
Q ss_conf 38999658987589943
Q gi|254780454|r 345 EVVFRLDSSNSSVFIRG 361 (385)
Q Consensus 345 ~i~l~~~~~~~p~~i~~ 361 (385)
+|.++++. ..|..++-
T Consensus 228 ~v~i~~~~-~~pL~i~~ 243 (263)
T 3a1j_C 228 KVSIRTDN-RGFLSLQY 243 (263)
T ss_dssp EEEEEEET-TCCEEEEE
T ss_pred EEEEEECC-CCCEEEEE
T ss_conf 79999639-92189999