HHsearch alignment of GI: 254780454 and MMDB domain: 3fds_D_
>3fds_D (D:) DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=100.00 E-value=8.6e-41 Score=266.10 Aligned_cols=229 Identities=10% Similarity=0.076 Sum_probs=197.9
Q ss_pred HHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC-------CCCCHHCCCCCHHHHHH
Q ss_conf 55420220230024556521011667761787348999853415766664357875-------33100000100012222
Q gi|254780454|r 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI-------AKMPSIIVPRKAVGEIL 209 (385)
Q Consensus 137 l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~-------~~~~~~iiP~k~l~el~ 209 (385)
.+++++++.||++.++.||+|+||+|++.++ .|.++|||||||++++..++... .....++||.|.+.++.
T Consensus 3 ~a~~~~~~~~a~~~~~~~~~l~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~~~~~~ip~k~l~~i~ 80 (245)
T 3fds_D 3 KAKVIDAVSFSYILRTVGDFLSEANFIVTKE--GIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDIL 80 (245)
T ss_dssp EEEESCHHHHHHHHHHHHTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHHHCEEEEEEECC--CEEEEEECCCCEEEEEEEECHHHCCEEEECCCCCEEEEEHHHHHHHH
T ss_conf 9998468999999999998756399999168--06999998885799999968766968985796527767889999987
Q ss_pred HHCCCC-CCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 102776-4643313345530100250699985126655322101355566179984899888898874101235553025
Q gi|254780454|r 210 RILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 (385)
Q Consensus 210 k~l~~~-~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l 288 (385)
|.+... ..++++..+++++.|.+++.++++|+++|.||+|++++|.++++++++++.+|.++++|+.+++++ +.+
T Consensus 81 k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~~p~~~~~~~~~~~~~i~i~~~~l~~al~r~~~~~~~----v~~ 156 (245)
T 3fds_D 81 KRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEV----LNI 156 (245)
T ss_dssp TTCCTTCEEEEEECSSEEEEEEESSSEEEEEEECCCCCCCCC----CCCSEEEEEEHHHHHHHHHHHTTTCSE----EEE
T ss_pred HCCCCCCEEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCE----EEE
T ss_conf 2457896799996389708999834128999514455422467888887459985299999999863044887----999
Q ss_pred EEECCEEEEEECCCCCEEEE-----EEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCC
Q ss_conf 65176599998078732689-----9999896288439996388998898735753346633899965898758994377
Q gi|254780454|r 289 SLSSDKLCMTVDNPDMGKAI-----ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 (385)
Q Consensus 289 ~~~~~~l~i~~~~~e~g~~~-----e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~ 363 (385)
+++.+.+++++.+.+.+... +.+.+.+.|++++++||++||+|+|+++++ +.+.+.+.++.+|+++++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~~~i~fn~~yL~~~l~~~~~-----~~~v~~~~~~~~p~~i~~~~ 231 (245)
T 3fds_D 157 HSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRA-----SDSMELYFGSQIPLKLRFKL 231 (245)
T ss_dssp EEETTEEEEEEECSSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGT-----CSEEEEEECTTSCEEEEEEC
T ss_pred EECCCEEEEEEECCCCEEEEEECCCCCCCEEECCCCEEEEEEHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEEC
T ss_conf 9808989999964673599998789984124316732459938999988644258-----98699998499678999991
Q ss_pred CCCCCCCCCCCCEEEEEEEE
Q ss_conf 65444555667637998321
Q gi|254780454|r 364 KDSKNNKDNKVNAFYVLMPM 383 (385)
Q Consensus 364 ~~~~~~~~~~~~~~~liMPv 383 (385)
+ ++..+.|+||||
T Consensus 232 ~-------~~~~~~~iimP~ 244 (245)
T 3fds_D 232 P-------QEGYGDFYIAPR 244 (245)
T ss_dssp S-------TTCEEEEEECCC
T ss_pred C-------CCEEEEEEECCC
T ss_conf 8-------980899998228