HHsearch alignment of GI: 254780454 and MMDB domain: 3fds_D_

>3fds_D (D:) DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=100.00  E-value=8.6e-41  Score=266.10  Aligned_cols=229  Identities=10%  Similarity=0.076  Sum_probs=197.9

Q ss_pred             HHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC-------CCCCHHCCCCCHHHHHH
Q ss_conf             55420220230024556521011667761787348999853415766664357875-------33100000100012222
Q gi|254780454|r  137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI-------AKMPSIIVPRKAVGEIL  209 (385)
Q Consensus       137 l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~-------~~~~~~iiP~k~l~el~  209 (385)
                      .+++++++.||++.++.||+|+||+|++.++  .|.++|||||||++++..++...       .....++||.|.+.++.
T Consensus         3 ~a~~~~~~~~a~~~~~~~~~l~gv~~~~~~~--~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~~~~~~ip~k~l~~i~   80 (245)
T 3fds_D            3 KAKVIDAVSFSYILRTVGDFLSEANFIVTKE--GIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDIL   80 (245)
T ss_dssp             EEEESCHHHHHHHHHHHHTTCSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHHHCEEEEEEECC--CEEEEEECCCCEEEEEEEECHHHCCEEEECCCCCEEEEEHHHHHHHH
T ss_conf             9998468999999999998756399999168--06999998885799999968766968985796527767889999987


Q ss_pred             HHCCCC-CCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             102776-4643313345530100250699985126655322101355566179984899888898874101235553025
Q gi|254780454|r  210 RILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL  288 (385)
Q Consensus       210 k~l~~~-~~~v~i~~~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~~~i~l  288 (385)
                      |.+... ..++++..+++++.|.+++.++++|+++|.||+|++++|.++++++++++.+|.++++|+.+++++    +.+
T Consensus        81 k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~~p~~~~~~~~~~~~~i~i~~~~l~~al~r~~~~~~~----v~~  156 (245)
T 3fds_D           81 KRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEV----LNI  156 (245)
T ss_dssp             TTCCTTCEEEEEECSSEEEEEEESSSEEEEEEECCCCCCCCC----CCCSEEEEEEHHHHHHHHHHHTTTCSE----EEE
T ss_pred             HCCCCCCEEEEEECCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCCE----EEE
T ss_conf             2457896799996389708999834128999514455422467888887459985299999999863044887----999


Q ss_pred             EEECCEEEEEECCCCCEEEE-----EEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCC
Q ss_conf             65176599998078732689-----9999896288439996388998898735753346633899965898758994377
Q gi|254780454|r  289 SLSSDKLCMTVDNPDMGKAI-----ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD  363 (385)
Q Consensus       289 ~~~~~~l~i~~~~~e~g~~~-----e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~  363 (385)
                      +++.+.+++++.+.+.+...     +.+.+.+.|++++++||++||+|+|+++++     +.+.+.+.++.+|+++++..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~~~i~fn~~yL~~~l~~~~~-----~~~v~~~~~~~~p~~i~~~~  231 (245)
T 3fds_D          157 HSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRA-----SDSMELYFGSQIPLKLRFKL  231 (245)
T ss_dssp             EEETTEEEEEEECSSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGT-----CSEEEEEECTTSCEEEEEEC
T ss_pred             EECCCEEEEEEECCCCEEEEEECCCCCCCEEECCCCEEEEEEHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEEC
T ss_conf             9808989999964673599998789984124316732459938999988644258-----98699998499678999991


Q ss_pred             CCCCCCCCCCCCEEEEEEEE
Q ss_conf             65444555667637998321
Q gi|254780454|r  364 KDSKNNKDNKVNAFYVLMPM  383 (385)
Q Consensus       364 ~~~~~~~~~~~~~~~liMPv  383 (385)
                      +       ++..+.|+||||
T Consensus       232 ~-------~~~~~~~iimP~  244 (245)
T 3fds_D          232 P-------QEGYGDFYIAPR  244 (245)
T ss_dssp             S-------TTCEEEEEECCC
T ss_pred             C-------CCEEEEEEECCC
T ss_conf             8-------980899998228