HHsearch alignment of GI: 254780454 and MMDB domain: 3fds_D_
>3fds_D (D:) DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=99.11 E-value=2.5e-09 Score=75.25 Aligned_cols=196 Identities=7% Similarity=0.040 Sum_probs=128.1
Q ss_pred CCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE---------ECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf 8886101338999989979999967828999999777---------5268079994998778874077777304777336
Q gi|254780454|r 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS---------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94 (385)
Q Consensus 24 k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~---------i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~~ 94 (385)
....|++.++++++.+++|.+.|||+..-....++.+ ..+...+.||.+.+.+++|.++++..+.+....+
T Consensus 17 ~~~~~~l~gv~~~~~~~~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~~~~~~ip~k~l~~i~k~~~~~~~~~i~~~~~ 96 (245)
T 3fds_D 17 RTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNES 96 (245)
T ss_dssp HHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHHHHHTTCCTTCEEEEEECSS
T ss_pred HHHHHHHCEEEEEEECCCEEEEEECCCCEEEEEEEECHHHCCEEEECCCCCEEEEEHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 99998756399999168069999988857999999687669689857965277678899999872457896799996389
Q ss_pred CCEEEEEEECCCEEEEECCCCCCCC---CCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEE
Q ss_conf 7508999867820243036621143---2123324304505611355420220230024556521011667761787348
Q gi|254780454|r 95 LGTEVNISHGDSNFYLQSFPESEFP---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 (385)
Q Consensus 95 ~~~~i~i~~~~~~~~l~~~~~~~fP---~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l 171 (385)
+.++.+.++..++.....+. .|| .++..+....+.++...|+++++++...+. + +.+.++.+...+
T Consensus 97 -~~~~~~~~~~~~~~~~li~~-~~p~~~~~~~~~~~~~i~i~~~~l~~al~r~~~~~~--~-------v~~~~~~~~~~~ 165 (245)
T 3fds_D 97 -KLTLTFDGEFTRSFELPLIQ-VESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGE--V-------LNIHSKENKLYF 165 (245)
T ss_dssp -EEEEEEESSSEEEEEEECCC-CCCCCC----CCCSEEEEEEHHHHHHHHHHHTTTCS--E-------EEEEEETTEEEE
T ss_pred -CEEEEEEECCEEEEEECCCC-CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCC--E-------EEEEECCCEEEE
T ss_conf -70899983412899951445-542246788888745998529999999986304488--7-------999980898999
Q ss_pred EEEEECCEEEEEE--EEECCCC-CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-EEEE
Q ss_conf 9998534157666--6435787-533100000100012222102776464331334553-0100
Q gi|254780454|r 172 CAVATDGHRLAVA--EVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLN 231 (385)
Q Consensus 172 ~~vaTDg~RLa~~--~~~~~~~-~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~-i~~~ 231 (385)
...+.++-.-... +...... .+++..+.+..+.|.+..+.+... ..+.+..+.+. +.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~ge~~~i~fn~~yL~~~l~~~~~~-~~v~~~~~~~~p~~i~ 228 (245)
T 3fds_D 166 EVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRAS-DSMELYFGSQIPLKLR 228 (245)
T ss_dssp EEECSSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGTC-SEEEEEECTTSCEEEE
T ss_pred EEECCCCEEEEEECCCCCCCEEECCCCEEEEEEHHHHHHHHHHCCCC-CEEEEEECCCCCEEEE
T ss_conf 99646735999987899841243167324599389999886442589-8699998499678999