HHsearch alignment of GI: 254780454 and MMDB domain: 3fds_D_

>3fds_D (D:) DNA polymerase sliding clamp C; protein-protein complex, cytoplasm, DNA damage, DNA repair, DNA replication, DNA-binding; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=99.11  E-value=2.5e-09  Score=75.25  Aligned_cols=196  Identities=7%  Similarity=0.040  Sum_probs=128.1

Q ss_pred             CCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEEEE---------ECCCCEEEEEHHHHHHHHHCCCCCCCEEEEEECC
Q ss_conf             8886101338999989979999967828999999777---------5268079994998778874077777304777336
Q gi|254780454|r   24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS---------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE   94 (385)
Q Consensus        24 k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~~~---------i~~~G~~~v~a~~l~~iik~L~~~~~i~~~~~~~   94 (385)
                      ....|++.++++++.+++|.+.|||+..-....++.+         ..+...+.||.+.+.+++|.++++..+.+....+
T Consensus        17 ~~~~~~l~gv~~~~~~~~l~l~atD~~rla~~~~~~~~~~f~~~~~~~~~~~~~ip~k~l~~i~k~~~~~~~~~i~~~~~   96 (245)
T 3fds_D           17 RTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNES   96 (245)
T ss_dssp             HHHHTTCSEEEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESSSCEEEEEEHHHHHHHHTTCCTTCEEEEEECSS
T ss_pred             HHHHHHHCEEEEEEECCCEEEEEECCCCEEEEEEEECHHHCCEEEECCCCCEEEEEHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             99998756399999168069999988857999999687669689857965277678899999872457896799996389


Q ss_pred             CCEEEEEEECCCEEEEECCCCCCCC---CCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEE
Q ss_conf             7508999867820243036621143---2123324304505611355420220230024556521011667761787348
Q gi|254780454|r   95 LGTEVNISHGDSNFYLQSFPESEFP---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL  171 (385)
Q Consensus        95 ~~~~i~i~~~~~~~~l~~~~~~~fP---~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l  171 (385)
                       +.++.+.++..++.....+. .||   .++..+....+.++...|+++++++...+.  +       +.+.++.+...+
T Consensus        97 -~~~~~~~~~~~~~~~~li~~-~~p~~~~~~~~~~~~~i~i~~~~l~~al~r~~~~~~--~-------v~~~~~~~~~~~  165 (245)
T 3fds_D           97 -KLTLTFDGEFTRSFELPLIQ-VESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGE--V-------LNIHSKENKLYF  165 (245)
T ss_dssp             -EEEEEEESSSEEEEEEECCC-CCCCCC----CCCSEEEEEEHHHHHHHHHHHTTTCS--E-------EEEEEETTEEEE
T ss_pred             -CEEEEEEECCEEEEEECCCC-CCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCCCC--E-------EEEEECCCEEEE
T ss_conf             -70899983412899951445-542246788888745998529999999986304488--7-------999980898999


Q ss_pred             EEEEECCEEEEEE--EEECCCC-CCCCCHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCC-EEEE
Q ss_conf             9998534157666--6435787-533100000100012222102776464331334553-0100
Q gi|254780454|r  172 CAVATDGHRLAVA--EVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLN  231 (385)
Q Consensus       172 ~~vaTDg~RLa~~--~~~~~~~-~~~~~~~iiP~k~l~el~k~l~~~~~~v~i~~~~~~-i~~~  231 (385)
                      ...+.++-.-...  +...... .+++..+.+..+.|.+..+.+... ..+.+..+.+. +.+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~ge~~~i~fn~~yL~~~l~~~~~~-~~v~~~~~~~~p~~i~  228 (245)
T 3fds_D          166 EVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRAS-DSMELYFGSQIPLKLR  228 (245)
T ss_dssp             EEECSSCEEEEEECTTSSSCSEEEECCCEEEEEHHHHHHGGGGGGTC-SEEEEEECTTSCEEEE
T ss_pred             EEECCCCEEEEEECCCCCCCEEECCCCEEEEEEHHHHHHHHHHCCCC-CEEEEEECCCCCEEEE
T ss_conf             99646735999987899841243167324599389999886442589-8699998499678999