HHsearch alignment of GI: 254780454 and MMDB domain: 3k4x_A_

>3k4x_A (A:) PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=100.00  E-value=0  Score=413.44  Aligned_cols=364  Identities=15%  Similarity=0.115  Sum_probs=317.3

Q ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEE----EEEEECCCCEEEEEHHHHHH
Q ss_conf             95898599999999987502037888610133899998997999996782899999----97775268079994998778
Q gi|254780454|r    1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA----IPASVDVCGSITVSAHLLYD   76 (385)
Q Consensus         1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~----i~~~i~~~G~~~v~a~~l~~   76 (385)
                      |+|+|++++|.++|++++++++.++..|+++++++++.++++++++++.+.++...    .++...++|+++++++.|.+
T Consensus       408 ~~i~i~~~~L~~al~~v~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~L~~  487 (798)
T 3k4x_A          408 STLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLD  487 (798)
T ss_dssp             EEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEEEEECCBCCSSSGGGCBEEEESSCEEEEEEHHHHHH
T ss_pred             EEEEEEHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEHHHHHH
T ss_conf             89999989999999999855987999993898999999327469999926877666444159980883457983899998


Q ss_pred             HHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCC
Q ss_conf             87407777730477733675089998678202430366211432123324304505611355420220230024556521
Q gi|254780454|r   77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYY  156 (385)
Q Consensus        77 iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~  156 (385)
                      ++|.++++..+.....+.  .-+.+++|++++.+..++.   |.+|..+....++++++.|++++++|.||++.|+.|++
T Consensus       488 ~lk~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  562 (798)
T 3k4x_A          488 IIKGSSLSDRVGIRLSSE--APALFQFDLKSGFLQFFLA---PKFNDEGSNSQASNSGALEAKFEEASLFKRIIDGFKDC  562 (798)
T ss_dssp             HGGGGGTCSEEEEEECSS--SCEEEEEEETTEEEEEEEC---CCCC-------------CEEEESSHHHHHHHHHTTTTT
T ss_pred             HHHHCCCCCEEEEEECCC--CCEEEEEEECCEEEEEEEC---CCCCCCCCCHHHCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf             753404687699998499--8899999979969999988---76666678346343653599973168999999999988


Q ss_pred             EEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCEE
Q ss_conf             011667761787348999853415766664357875------33100000100012222102776-46433133455301
Q gi|254780454|r  157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIH  229 (385)
Q Consensus       157 L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el~k~l~~~-~~~v~i~~~~~~i~  229 (385)
                      |+||+|++.++  .+.+|||||||||+.+.+++...      +++.+++||+|.+.++.|++.++ ...+.++.+++++.
T Consensus       563 l~gv~~~~~~~--~~~~vatD~~Rla~~~~~l~~~~~~~~~~~~~~~~~ip~k~l~~l~k~~~~~~~~~i~i~~~~~~~~  640 (798)
T 3k4x_A          563 VQLVNFQCKED--GIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSII  640 (798)
T ss_dssp             CSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGEEEEECSSCEEEEEEHHHHHHHHHHSCSSSEEEEECCSSCSEEE
T ss_pred             HCEEEEEECCC--EEEEEEECCCCEEEEEEEECHHHCCEEECCCCEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCEEE
T ss_conf             53389998787--4899999888379999997878697142599879999989999998227899779999908998599


Q ss_pred             EEC------CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCC-------CCCCEEEEECCEEE
Q ss_conf             002------50699985126655322101355566179984899888898874101235-------55302565176599
Q gi|254780454|r  230 LNI------ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-------IQAVKLSLSSDKLC  296 (385)
Q Consensus       230 ~~~------~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~-------~~~i~l~~~~~~l~  296 (385)
                      |.+      ++.++++||++|+||||+- +|.++++++.++|.+|.++|+|+++++++.       ...+.+.++++.++
T Consensus       641 ~~~~~~~~~~~~~~~~~li~~~~p~~~~-~~~~~~~~i~v~~~~l~~~l~r~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  719 (798)
T 3k4x_A          641 LLFEDTKKDRIAEYSLKLMDIDADFLKI-EELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGS  719 (798)
T ss_dssp             EEEECSSCCCEEEEEEECCCCCCCCCCC-CCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEE
T ss_pred             EEEECCCCCEEEEEEEEEECCCCCCCCC-CCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEECCCEEE
T ss_conf             9997278880899998876047446788-876776899998999999999998559889999808989999993176269


Q ss_pred             EEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCE
Q ss_conf             99807873268999998962884399963889988987357533466338999658987589943776544455566763
Q gi|254780454|r  297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA  376 (385)
Q Consensus       297 i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~  376 (385)
                      +++.+.+.|.+.+.+++.++|++++++||++||+|+|+++++     ++|.+.+.++.+|++|+..+++        .++
T Consensus       720 ~~~~~~~~~~~~~~~~~~~~g~~~~i~fn~~yl~~~l~~~~~-----~~i~~~~~~~~~p~~i~~~~~~--------~~~  786 (798)
T 3k4x_A          720 VIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL-----SDRVGIRLSSEAPALFQFDLKS--------GFL  786 (798)
T ss_dssp             EEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT-----CSEEEEEECSSSCEEEEEEETT--------EEE
T ss_pred             EEEECCCCCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHHCC-----CCEEEEEEECCCCEEEEEEECC--------EEE
T ss_conf             999436677784332488648857999988999988635237-----8879999939988999999799--------899


Q ss_pred             EEEEEEEEC
Q ss_conf             799832129
Q gi|254780454|r  377 FYVLMPMRI  385 (385)
Q Consensus       377 ~~liMPvri  385 (385)
                      .|+|||+|.
T Consensus       787 ~~~lmP~~~  795 (798)
T 3k4x_A          787 QFFLAPKFN  795 (798)
T ss_dssp             EEEECCC--
T ss_pred             EEEECCCCC
T ss_conf             999967777