HHsearch alignment of GI: 254780454 and MMDB domain: 3k4x_A_
>3k4x_A (A:) PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=100.00 E-value=0 Score=413.44 Aligned_cols=364 Identities=15% Similarity=0.115 Sum_probs=317.3
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEE----EEEEECCCCEEEEEHHHHHH
Q ss_conf 95898599999999987502037888610133899998997999996782899999----97775268079994998778
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA----IPASVDVCGSITVSAHLLYD 76 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~----i~~~i~~~G~~~v~a~~l~~ 76 (385)
|+|+|++++|.++|++++++++.++..|+++++++++.++++++++++.+.++... .++...++|+++++++.|.+
T Consensus 408 ~~i~i~~~~L~~al~~v~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~L~~ 487 (798)
T 3k4x_A 408 STLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLD 487 (798)
T ss_dssp EEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEEEEECCBCCSSSGGGCBEEEESSCEEEEEEHHHHHH
T ss_pred EEEEEEHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEHHHHHH
T ss_conf 89999989999999999855987999993898999999327469999926877666444159980883457983899998
Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 87407777730477733675089998678202430366211432123324304505611355420220230024556521
Q gi|254780454|r 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYY 156 (385)
Q Consensus 77 iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~ 156 (385)
++|.++++..+.....+. .-+.+++|++++.+..++. |.+|..+....++++++.|++++++|.||++.|+.|++
T Consensus 488 ~lk~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 562 (798)
T 3k4x_A 488 IIKGSSLSDRVGIRLSSE--APALFQFDLKSGFLQFFLA---PKFNDEGSNSQASNSGALEAKFEEASLFKRIIDGFKDC 562 (798)
T ss_dssp HGGGGGTCSEEEEEECSS--SCEEEEEEETTEEEEEEEC---CCCC-------------CEEEESSHHHHHHHHHTTTTT
T ss_pred HHHHCCCCCEEEEEECCC--CCEEEEEEECCEEEEEEEC---CCCCCCCCCHHHCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 753404687699998499--8899999979969999988---76666678346343653599973168999999999988
Q ss_pred EEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCEE
Q ss_conf 011667761787348999853415766664357875------33100000100012222102776-46433133455301
Q gi|254780454|r 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIH 229 (385)
Q Consensus 157 L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el~k~l~~~-~~~v~i~~~~~~i~ 229 (385)
|+||+|++.++ .+.+|||||||||+.+.+++... +++.+++||+|.+.++.|++.++ ...+.++.+++++.
T Consensus 563 l~gv~~~~~~~--~~~~vatD~~Rla~~~~~l~~~~~~~~~~~~~~~~~ip~k~l~~l~k~~~~~~~~~i~i~~~~~~~~ 640 (798)
T 3k4x_A 563 VQLVNFQCKED--GIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSII 640 (798)
T ss_dssp CSEEEEEEETT--EEEEEEECTTSSEEEEEEEEGGGEEEEECSSCEEEEEEHHHHHHHHHHSCSSSEEEEECCSSCSEEE
T ss_pred HCEEEEEECCC--EEEEEEECCCCEEEEEEEECHHHCCEEECCCCEEEEEEHHHHHHHHHCCCCCCEEEEEEECCCCEEE
T ss_conf 53389998787--4899999888379999997878697142599879999989999998227899779999908998599
Q ss_pred EEC------CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCC-------CCCCEEEEECCEEE
Q ss_conf 002------50699985126655322101355566179984899888898874101235-------55302565176599
Q gi|254780454|r 230 LNI------ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-------IQAVKLSLSSDKLC 296 (385)
Q Consensus 230 ~~~------~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~-------~~~i~l~~~~~~l~ 296 (385)
|.+ ++.++++||++|+||||+- +|.++++++.++|.+|.++|+|+++++++. ...+.+.++++.++
T Consensus 641 ~~~~~~~~~~~~~~~~~li~~~~p~~~~-~~~~~~~~i~v~~~~l~~~l~r~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 719 (798)
T 3k4x_A 641 LLFEDTKKDRIAEYSLKLMDIDADFLKI-EELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGS 719 (798)
T ss_dssp EEEECSSCCCEEEEEEECCCCCCCCCCC-CCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEE
T ss_pred EEEECCCCCEEEEEEEEEECCCCCCCCC-CCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCEEEEEEEECCCEEE
T ss_conf 9997278880899998876047446788-876776899998999999999998559889999808989999993176269
Q ss_pred EEECCCCCEEEEEEEEEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCE
Q ss_conf 99807873268999998962884399963889988987357533466338999658987589943776544455566763
Q gi|254780454|r 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 (385)
Q Consensus 297 i~~~~~e~g~~~e~i~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~ 376 (385)
+++.+.+.|.+.+.+++.++|++++++||++||+|+|+++++ ++|.+.+.++.+|++|+..+++ .++
T Consensus 720 ~~~~~~~~~~~~~~~~~~~~g~~~~i~fn~~yl~~~l~~~~~-----~~i~~~~~~~~~p~~i~~~~~~--------~~~ 786 (798)
T 3k4x_A 720 VIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL-----SDRVGIRLSSEAPALFQFDLKS--------GFL 786 (798)
T ss_dssp EEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT-----CSEEEEEECSSSCEEEEEEETT--------EEE
T ss_pred EEEECCCCCCCCCCCEEEECCCCEEEEEEHHHHHHHHHHHCC-----CCEEEEEEECCCCEEEEEEECC--------EEE
T ss_conf 999436677784332488648857999988999988635237-----8879999939988999999799--------899
Q ss_pred EEEEEEEEC
Q ss_conf 799832129
Q gi|254780454|r 377 FYVLMPMRI 385 (385)
Q Consensus 377 ~~liMPvri 385 (385)
.|+|||+|.
T Consensus 787 ~~~lmP~~~ 795 (798)
T 3k4x_A 787 QFFLAPKFN 795 (798)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCC
T ss_conf 999967777