HHsearch alignment of GI: 254780454 and MMDB domain: 3k4x_A_
>3k4x_A (A:) PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=100.00 E-value=0 Score=345.69 Aligned_cols=361 Identities=14% Similarity=0.116 Sum_probs=303.3
Q ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHCEEEEEEECCEEEEEEECCEEEEEEEEE----EEECCCCEEEEEHHHHHH
Q ss_conf 9589859999999998750203788861013389999899799999678289999997----775268079994998778
Q gi|254780454|r 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP----ASVDVCGSITVSAHLLYD 76 (385)
Q Consensus 1 Mk~~i~~~~L~~~l~~v~~~i~~k~~~pil~~ilie~~~~~l~l~atd~~~~i~~~i~----~~i~~~G~~~v~a~~l~~ 76 (385)
|++++++++|.++++.++++++.++..|++.++++++.++++.+++++.+..+....+ ..++++|+++++++.|.+
T Consensus 141 ~~i~i~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~~~~k~l~~ 220 (798)
T 3k4x_A 141 STLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLD 220 (798)
T ss_dssp EEEEEEHHHHHHHHHHHTTTCSEEEEEEETTEEEEEEECSSEEEEEEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHH
T ss_pred EEEEEEHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCEEEEECHHHHHH
T ss_conf 89999999999999999860887999998998999998248648999953666778643158981881799980899987
Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCEEEECCCCCCCCC
Q ss_conf 87407777730477733675089998678202430366211432123324304505611355420220230024556521
Q gi|254780454|r 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYY 156 (385)
Q Consensus 77 iik~L~~~~~i~~~~~~~~~~~i~i~~~~~~~~l~~~~~~~fP~~~~~~~~~~~~i~~~~l~~~i~~t~~a~s~d~~r~~ 156 (385)
++|.+|.+..+.+...++ .-+.++.+.+.+.+ +...||.++..+....+.+++..+.++++++.||++.+++|++
T Consensus 221 iik~~~~~~~v~~~~~~~--~~l~~~~~~~~~~l---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 295 (798)
T 3k4x_A 221 IIKGSSLSDRVGIRLSSE--APALFQFDLKSGFL---QFFLAPKFNDEGSNSQSNGSGALEAKFEEASLFKRIIDGFKDC 295 (798)
T ss_dssp HGGGGGTCSEEEEEECSS--SCEEEEEEETTEEE---EEEECCC---------------CEEEESCHHHHHHHHHHHTTT
T ss_pred HHCCCCCCCEEEEEECCC--CCEEEEEEECCEEE---EEEECCCCCCCCCCCHHCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 653057797699998599--88999999788599---9998777887667620058752899972368999999999987
Q ss_pred EEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHHHHHHHCCCCC-CCCCCCCCCCCEE
Q ss_conf 011667761787348999853415766664357875------331000001000122221027764-6433133455301
Q gi|254780454|r 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIH 229 (385)
Q Consensus 157 L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~el~k~l~~~~-~~v~i~~~~~~i~ 229 (385)
|+||+|++.++ .|.++||||||||..+..++... +.+.+++||.|+|.++.|++.+++ .++.+..+..++.
T Consensus 296 l~gv~~~~~~~--~l~~~atD~~Rla~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~l~k~~~~~~~~~i~~~~~~~~~~ 373 (798)
T 3k4x_A 296 VQLVNFQCKED--GIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSII 373 (798)
T ss_dssp CSEEEEEEETT--EEEEEEECTTSCEEEEEEEEGGGSSEEECSSCEEEEEEHHHHHHHTTSSCTTSBEEEECCSSCSEEE
T ss_pred HCEEEEEECCC--EEEEEEECCCCEEEEEEEECHHHCCEEECCCCEEEEEEHHHHHHHHHCCCCCCEEEEEECCCCCEEE
T ss_conf 44256998788--1799999777389999996877598286289759999999999998338999879999738897799
Q ss_pred EEC-----CEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCC-----CCCEEEEECCEEEEEE
Q ss_conf 002-----506999851266553221013555661799848998888988741012355-----5302565176599998
Q gi|254780454|r 230 LNI-----ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299 (385)
Q Consensus 230 ~~~-----~~~~~~srLi~g~yPdy~~vip~~~~~~~~v~r~~l~~al~Rv~i~~~~~~-----~~i~l~~~~~~l~i~~ 299 (385)
|.+ +..++++|+++|.||||++++|.+++.+++++|++|.++|+|++.+++.+. ..+.+.++++.+++++
T Consensus 374 ~~~~~~~~~~~~~~s~li~~~~p~~~~ii~~~~~~~i~i~~~~L~~al~~v~~~~~~~~~~~~~~~i~~~~~~~~l~~~~ 453 (798)
T 3k4x_A 374 LLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSV 453 (798)
T ss_dssp EEEECSSSSCEEEEEEECBCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCSEEEEEEETTEEEEEEECSSCEEEE
T ss_pred EEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEEECCCEEEE
T ss_conf 99980788749999997545676668999876308999998999999999985598799999389899999932746999
Q ss_pred CCCCCEE-EEEEE-EEEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEE
Q ss_conf 0787326-89999-989628843999638899889873575334663389996589875899437765444555667637
Q gi|254780454|r 300 DNPDMGK-AIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF 377 (385)
Q Consensus 300 ~~~e~g~-~~e~i-~~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~ 377 (385)
.+.+.+. ..... .....|++.+++||++||.++++++++ +.+.+...++..|++++.... .+.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~L~~~lk~~~~-----~~~i~~~~~~~~~~~i~~~~~----------~~~ 518 (798)
T 3k4x_A 454 IIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL-----SDRVGIRLSSEAPALFQFDLK----------SGF 518 (798)
T ss_dssp EECCBCCSSSGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT-----CSEEEEEECSSSCEEEEEEET----------TEE
T ss_pred EEECCCCCCCCCCCEEEEECCCEEEEEEHHHHHHHHHHCCC-----CCEEEEEECCCCCEEEEEEEC----------CEE
T ss_conf 99268776664441599808834579838999987534046-----876999984998899999979----------969
Q ss_pred EEEEEE
Q ss_conf 998321
Q gi|254780454|r 378 YVLMPM 383 (385)
Q Consensus 378 ~liMPv 383 (385)
+..||+
T Consensus 519 ~~~~~~ 524 (798)
T 3k4x_A 519 LQFFLA 524 (798)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 999988