HHsearch results for GI: 254780454 and protein with PDBid: 1iz5_A
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A
Probab=98.86 E-value=1.4e-06 Score=57.53 Aligned_cols=219 Identities=16% Similarity=0.275 Sum_probs=145.7
Q ss_pred CCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHH
Q ss_conf 611355420220230024556521011667761787348999853415766664357875------33100000100012
Q gi|254780454|r 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVG 206 (385)
Q Consensus 133 ~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~ 206 (385)
++..|+++++.. +....=+.|++..++.++ -+.|..|-+...+.+.... +++..+-|+.+.|.
T Consensus 9 ~~~~f~~ii~~l---------~~~~~e~~~~~~~~Gl~i--~~~d~s~v~l~~l~l~~~~F~~Y~~~~~~~~gi~~~~L~ 77 (249)
T 1iz5_A 9 GAKEFAQLIDTA---------SKLIDEAAFKVTEDGISM--RAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLK 77 (249)
T ss_dssp CHHHHHHHHHHH---------TSSCSEEEEEECSSEEEE--EEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHHHHH
T ss_pred CHHHHHHHHHHH---------HHHHCEEEEEEECCEEEE--EEECCCCEEEEEEEECHHHCCEECCCCCEEEEEEHHHHH
T ss_conf 689999999999---------987584999997896899--999898789999998988794654588889999969989
Q ss_pred HHHHHCCCCCCCCCCCCCCC-CEEEECC---EEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 22210277646433133455-3010025---0699985126655322101355-56617998489988889887410123
Q gi|254780454|r 207 EILRILSSKDSSVKVSLSES-RIHLNIE---SLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSV 281 (385)
Q Consensus 207 el~k~l~~~~~~v~i~~~~~-~i~~~~~---~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~ 281 (385)
.+.|.+... +.+.+..+++ .+.+... ...+..++++....+. -+|. +++..+.+.-+.|.+.++-+..+.+
T Consensus 78 kilk~~~~~-d~l~~~~~~~~~l~i~~~~~~~~~~~i~l~~~~~~~~--~ip~~~~~~~i~~~s~~f~~i~~~l~~~~d- 153 (249)
T 1iz5_A 78 KILKRGKAK-DTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEV--DLPELPFTAKVVVLGEVLKAAVKAASLVSD- 153 (249)
T ss_dssp HHHTTCCTT-CEEEEEECSSSEEEEEEESSSEEEEEEECBCCCC-------CCCCCCEEEEEEHHHHHHHHHHHTTTCS-
T ss_pred HHHHCCCCC-CEEEEEECCCCEEEEEEECCCEEEEEEEECCCCCCCC--CCCCCCCCEEEEECHHHHHHHHHHHHCCCC-
T ss_conf 998436899-6699995588627999953512799986033453346--788877654997249999999987501598-
Q ss_pred CCCCCEEEEECCEEEEEECCCCCEEEEEEEEE------E-ECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 55530256517659999807873268999998------9-6288439996388998898735753346633899965898
Q gi|254780454|r 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV------Y-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 (385)
Q Consensus 282 ~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~------~-~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~ 354 (385)
.|.+..+++++.+++.+ |.|.++-.+.. . -.+++.+..|+.+||..+.++..- .+.|.+++. +.
T Consensus 154 ---~i~i~~~~~~i~~~s~g-d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~~k~~~l----s~~v~l~~~-~~ 224 (249)
T 1iz5_A 154 ---SIKFIARENEFIMKAEG-ETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGK----ADEVTIKFG-NE 224 (249)
T ss_dssp ---EEEEEEETTEEEEEEEC-SSCEEEEEEETTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCT----TCEEEEEEC-TT
T ss_pred ---EEEEEECCCEEEEEEEC-CCCEEEEEEECCCCCCEEEECCCCCCEEEHHHHHHHHHHHCCC----CCEEEEEEC-CC
T ss_conf ---89999938838999963-6655899982167640456507750036638899999875368----985999974-99
Q ss_pred CCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 7589943776544455566763799832
Q gi|254780454|r 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 355 ~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
.|+.+.-.-++ .....+.|-|
T Consensus 225 ~Pl~~~~~i~~-------~g~i~f~lAP 245 (249)
T 1iz5_A 225 MPMQMEYYIRD-------EGRLTFLLAP 245 (249)
T ss_dssp CCEEEEEEETT-------TEEEEEEECC
T ss_pred CCEEEEEEECC-------CCEEEEEECC
T ss_conf 77999999689-------8199999836