HHsearch results for GI: 254780454 and protein with PDBid: 1plq_A
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity factor; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3l0x_B
Probab=99.00 E-value=3.1e-07 Score=61.59 Aligned_cols=218 Identities=20% Similarity=0.315 Sum_probs=148.8
Q ss_pred CCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCCHHH
Q ss_conf 611355420220230024556521011667761787348999853415766664357875------33100000100012
Q gi|254780454|r 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRKAVG 206 (385)
Q Consensus 133 ~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k~l~ 206 (385)
++..|+++++.. +....=++|++..++.++ .|.|..|.+...+.++... +++..+-|..+.+.
T Consensus 8 ~a~~fk~i~~~l---------~~l~~e~~~~~~~~Gi~i--~~~D~s~v~lv~~~l~~~~F~~Y~~~~~~~~gi~~~~l~ 76 (258)
T 1plq_A 8 EASLFKRIIDGF---------KDCVQLVNFQCKEDGIIA--QAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLS 76 (258)
T ss_dssp SHHHHHHHHHHH---------TTTCSEEEEEEETTEEEE--EEECTTSSEEEEEEEEGGGSSEECCSSCEEEEEEHHHHH
T ss_pred CHHHHHHHHHHH---------HHHHCEEEEEEECCEEEE--EEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHHHHH
T ss_conf 769999999999---------887653999993897899--999899789999998889892652686689999989989
Q ss_pred HHHHHCCCCCCCCCCCCCCC--CEEEECCE------EEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 22210277646433133455--30100250------699985126655322101355-5661799848998888988741
Q gi|254780454|r 207 EILRILSSKDSSVKVSLSES--RIHLNIES------LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSI 277 (385)
Q Consensus 207 el~k~l~~~~~~v~i~~~~~--~i~~~~~~------~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i 277 (385)
.+.|.+.. .+.+.+.+.++ .+.+...+ ..+..+|++-...+.. +|. +++..++++-..|.+.++-+..
T Consensus 77 kilk~~~~-~d~l~l~~~~~~~~l~~~~~~~~~~~~~~~~l~l~d~~~~~~~--ip~~~~~~~i~~~s~~f~~~~k~l~~ 153 (258)
T 1plq_A 77 KILRCGNN-TDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLK--IEELQYDSTLSLPSSEFSKIVRDLSQ 153 (258)
T ss_dssp HHTTCSTT-TSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCCCCCCCC--CCCSCCSEEEEEEHHHHHHHHHHHHT
T ss_pred HHHHHCCC-CCEEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCC--CCCCCCCEEEEEEHHHHHHHHHHHHH
T ss_conf 99861478-8679999955887169999558876379999733678721246--88767646899759999999998771
Q ss_pred CCCCCCCCCEEEEECCEEEEEECCCCCEEEEEEEEE------------EECCCCEEEEECHHHHHHHHHHCCCCCCCCCE
Q ss_conf 012355530256517659999807873268999998------------96288439996388998898735753346633
Q gi|254780454|r 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV------------YYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 (385)
Q Consensus 278 ~~~~~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~~------------~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~ 345 (385)
+++ .+.+..+++++.+++.+ |.|++.-.+.. .-.+++++..|..+||..+++.... .+.
T Consensus 154 ~~d----~i~i~~~~~~~~f~~~g-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~l----s~~ 224 (258)
T 1plq_A 154 LSD----SINIMITKETIKFVADG-DIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSL----SDR 224 (258)
T ss_dssp TCS----EEEEEEETTEEEEEEEC-SSCEEEEEECCBCCTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGT----CSE
T ss_pred HCC----EEEEEECCCCEEEEEEE-CCCEEEEEEECCCCCCCCCCEEEEECCCCEEEEEEHHHHHHHHHHCCC----CCE
T ss_conf 388----79999858830899980-364389998035666775420465227713489958999998725257----988
Q ss_pred EEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 8999658987589943776544455566763799832
Q gi|254780454|r 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 346 i~l~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~liMP 382 (385)
|+++++ +..|+.+.-.-+. ..-.|.|.|
T Consensus 225 v~i~~~-~~~Pl~~~~~~~~--------g~i~f~lAP 252 (258)
T 1plq_A 225 VGIRLS-SEAPALFQFDLKS--------GFLQFFLAP 252 (258)
T ss_dssp EEEEEC-SSSCEEEEEEETT--------EEEEEEECC
T ss_pred EEEEEE-CCCCEEEEEEECC--------EEEEEEECC
T ss_conf 999982-8966899999588--------799999936