HHsearch results for GI: 254780454 and protein with PDBid: 1rwz_A
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A*
Probab=99.56 E-value=2.3e-12 Score=92.67 Aligned_cols=224 Identities=20% Similarity=0.254 Sum_probs=165.8
Q ss_pred EECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCC
Q ss_conf 505611355420220230024556521011667761787348999853415766664357875------33100000100
Q gi|254780454|r 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRK 203 (385)
Q Consensus 130 ~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k 203 (385)
+.+++..|+.+++ ..+..+..++|++..++ +...|.|..|.+.....++... +++..+-|+.+
T Consensus 4 ~~~~~~~~k~i~~---------~l~~l~~e~~~~~~~~G--i~i~~~D~s~v~li~~~l~~~~F~~y~~~~~~~igi~~~ 72 (245)
T 1rwz_A 4 VIMTGELLKTVTR---------AIVALVSEARIHFLEKG--LHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMD 72 (245)
T ss_dssp EEEEHHHHHHHHH---------HHHTTCSEEEEEEETTE--EEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHH
T ss_pred EEECHHHHHHHHH---------HHHHHHCCEEEEEECCE--EEEEEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHH
T ss_conf 6861899999999---------99997585899993895--799999877489999997878793752698879999989
Q ss_pred HHHHHHHHCCCCCCCCCCCC-CCCCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf 01222210277646433133-45530100250699985126655322101355-56617998489988889887410123
Q gi|254780454|r 204 AVGEILRILSSKDSSVKVSL-SESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSV 281 (385)
Q Consensus 204 ~l~el~k~l~~~~~~v~i~~-~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~ 281 (385)
.|..+.|.+.. ++.+.+.+ +++.+.+..++..+..+|++..+.+-.--+|+ +++..++++.++|.++++.+..+++
T Consensus 73 ~l~kilk~~~~-~d~l~l~~~~~~~l~i~~~~~~~~~~l~~~d~~~~~~~ip~~e~~~~i~m~s~~f~~~i~~l~~~~d- 150 (245)
T 1rwz_A 73 RIFDISKSIST-KDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISD- 150 (245)
T ss_dssp HHHHHHTTSCT-TSEEEEEESSSSEEEEEETTEEEEEECBCGGGSCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCS-
T ss_pred HHHHHHHCCCC-CCEEEEEECCCCCEEEEEEEEEEEEEECCHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCC-
T ss_conf 98988732589-9659999806882499998612456402411022467999855317999629999999999860577-
Q ss_pred CCCCCEEEEECCEEEEEECCCCCEEEEEEEE----EEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCE
Q ss_conf 5553025651765999980787326899999----896288439996388998898735753346633899965898758
Q gi|254780454|r 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMN----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 (385)
Q Consensus 282 ~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~----~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~ 357 (385)
.|.+..+++++.+++.+ +.|++.-.+. .++++++.+..|+.+||.+++++.... ++|++++.+ ..|+
T Consensus 151 ---~i~i~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~ls----~~V~i~~~~-~~Pl 221 (245)
T 1rwz_A 151 ---QVIFRSDKEGFRIEAKG-DVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGSG----DLLTIHLGT-NYPV 221 (245)
T ss_dssp ---EEEEEEETTEEEEEEEC-SSCEEEEEECGGGSSEECCCCEEEEEEHHHHHHHGGGCCTT----CEEEEEECS-SSCE
T ss_pred ---EEEEEEECCEEEEEEEC-CCCEEEEEECCCCCCEECCCCCCCEEEHHHHHHHHHHCCCC----CEEEEEECC-CCCE
T ss_conf ---57999826779999994-67439999368741000367545287489999987450589----869999759-9878
Q ss_pred EEECC-CCCCCCCCCCCCCEEEEEEE
Q ss_conf 99437-76544455566763799832
Q gi|254780454|r 358 FIRGK-DKDSKNNKDNKVNAFYVLMP 382 (385)
Q Consensus 358 ~i~~~-~~~~~~~~~~~~~~~~liMP 382 (385)
.+.-. .++ .....|.|-|
T Consensus 222 ~l~y~~~~~-------~g~i~f~lAP 240 (245)
T 1rwz_A 222 RLVFELVGG-------RAKVEYILAP 240 (245)
T ss_dssp EEEEEETTT-------TEEEEEEECC
T ss_pred EEEEEECCC-------CEEEEEEECC
T ss_conf 999998698-------3899999887