HHsearch results for GI: 254780454 and protein with PDBid: 1rwz_A

>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A*
Probab=99.56  E-value=2.3e-12  Score=92.67  Aligned_cols=224  Identities=20%  Similarity=0.254  Sum_probs=165.8

Q ss_pred             EECCCHHHHHHHCCEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCCC------CCCCHHCCCCC
Q ss_conf             505611355420220230024556521011667761787348999853415766664357875------33100000100
Q gi|254780454|r  130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI------AKMPSIIVPRK  203 (385)
Q Consensus       130 ~~i~~~~l~~~i~~t~~a~s~d~~r~~L~Gv~~~~~~~~~~l~~vaTDg~RLa~~~~~~~~~~------~~~~~~iiP~k  203 (385)
                      +.+++..|+.+++         ..+..+..++|++..++  +...|.|..|.+.....++...      +++..+-|+.+
T Consensus         4 ~~~~~~~~k~i~~---------~l~~l~~e~~~~~~~~G--i~i~~~D~s~v~li~~~l~~~~F~~y~~~~~~~igi~~~   72 (245)
T 1rwz_A            4 VIMTGELLKTVTR---------AIVALVSEARIHFLEKG--LHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMD   72 (245)
T ss_dssp             EEEEHHHHHHHHH---------HHHTTCSEEEEEEETTE--EEEEEECTTSSEEEEEEEEGGGSSEEEESSCEEEEEEHH
T ss_pred             EEECHHHHHHHHH---------HHHHHHCCEEEEEECCE--EEEEEECCCCEEEEEEEECHHHCEEECCCCCEEEEEEHH
T ss_conf             6861899999999---------99997585899993895--799999877489999997878793752698879999989


Q ss_pred             HHHHHHHHCCCCCCCCCCCC-CCCCEEEECCEEEEEEEECCCCCCCCCCCCCC-CCCCEEEEEHHHHHHHHHHHHHCCCC
Q ss_conf             01222210277646433133-45530100250699985126655322101355-56617998489988889887410123
Q gi|254780454|r  204 AVGEILRILSSKDSSVKVSL-SESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSV  281 (385)
Q Consensus       204 ~l~el~k~l~~~~~~v~i~~-~~~~i~~~~~~~~~~srLi~g~yPdy~~vip~-~~~~~~~v~r~~l~~al~Rv~i~~~~  281 (385)
                      .|..+.|.+.. ++.+.+.+ +++.+.+..++..+..+|++..+.+-.--+|+ +++..++++.++|.++++.+..+++ 
T Consensus        73 ~l~kilk~~~~-~d~l~l~~~~~~~l~i~~~~~~~~~~l~~~d~~~~~~~ip~~e~~~~i~m~s~~f~~~i~~l~~~~d-  150 (245)
T 1rwz_A           73 RIFDISKSIST-KDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISD-  150 (245)
T ss_dssp             HHHHHHTTSCT-TSEEEEEESSSSEEEEEETTEEEEEECBCGGGSCCCCCCCCCCCSEEEEEEHHHHHHHHHHHHTTCS-
T ss_pred             HHHHHHHCCCC-CCEEEEEECCCCCEEEEEEEEEEEEEECCHHHCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCC-
T ss_conf             98988732589-9659999806882499998612456402411022467999855317999629999999999860577-


Q ss_pred             CCCCCEEEEECCEEEEEECCCCCEEEEEEEE----EEECCCCEEEEECHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCE
Q ss_conf             5553025651765999980787326899999----896288439996388998898735753346633899965898758
Q gi|254780454|r  282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMN----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV  357 (385)
Q Consensus       282 ~~~~i~l~~~~~~l~i~~~~~e~g~~~e~i~----~~~~G~~~~i~fN~~yl~d~L~~~~~~~~~~e~i~l~~~~~~~p~  357 (385)
                         .|.+..+++++.+++.+ +.|++.-.+.    .++++++.+..|+.+||.+++++....    ++|++++.+ ..|+
T Consensus       151 ---~i~i~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~fsl~yl~~~~k~~~ls----~~V~i~~~~-~~Pl  221 (245)
T 1rwz_A          151 ---QVIFRSDKEGFRIEAKG-DVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGSG----DLLTIHLGT-NYPV  221 (245)
T ss_dssp             ---EEEEEEETTEEEEEEEC-SSCEEEEEECGGGSSEECCCCEEEEEEHHHHHHHGGGCCTT----CEEEEEECS-SSCE
T ss_pred             ---EEEEEEECCEEEEEEEC-CCCEEEEEECCCCCCEECCCCCCCEEEHHHHHHHHHHCCCC----CEEEEEECC-CCCE
T ss_conf             ---57999826779999994-67439999368741000367545287489999987450589----869999759-9878


Q ss_pred             EEECC-CCCCCCCCCCCCCEEEEEEE
Q ss_conf             99437-76544455566763799832
Q gi|254780454|r  358 FIRGK-DKDSKNNKDNKVNAFYVLMP  382 (385)
Q Consensus       358 ~i~~~-~~~~~~~~~~~~~~~~liMP  382 (385)
                      .+.-. .++       .....|.|-|
T Consensus       222 ~l~y~~~~~-------~g~i~f~lAP  240 (245)
T 1rwz_A          222 RLVFELVGG-------RAKVEYILAP  240 (245)
T ss_dssp             EEEEEETTT-------TEEEEEEECC
T ss_pred             EEEEEECCC-------CEEEEEEECC
T ss_conf             999998698-------3899999887